Genetic Structure Analysis

# for OutFLANK software

### Install required package devtools if not installed
if (!("devtools" %in% installed.packages())){install.packages("devtools")}
library(devtools)

### Install required package qvalue if not installed
if (!("qvalue" %in% installed.packages())){
  source("http://bioconductor.org/biocLite.R")
  biocLite("qvalue")
  }

### Install OutFLANK from github if not installed
if (!("OutFLANK" %in% installed.packages())){install_github("whitlock/OutFLANK")}

# Add all required libraries that are installed with install.packages() here
list.of.packages <- c("tidyverse", "reshape2", "plotly", "vcfR", "network", "janitor", "corrplot", "PerformanceAnalytics", "ggpubr", "RColorBrewer", "usedist", "vegan", "forcats", "valr", "pcadapt", "OutFLANK")

# Add all libraries that are installed using BiocManager here
bioconductor.packages <- c("SNPRelate", "DESeq2", "rtracklayer", "qvalue", "SeqArray")

# Install BiocManager if needed
if(!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager")

# Get names of all required packages that aren't installed
new.packages <- list.of.packages[!(list.of.packages %in% installed.packages()[, "Package"])]
new.bioc.packages <- bioconductor.packages[!(bioconductor.packages %in% installed.packages()[, "Package"])]
# Install all new packages
if(length(new.packages)) install.packages(new.packages)
if(length(new.bioc.packages)) BiocManager::install(new.bioc.packages)

# Load all required libraries
all.packages <- c(list.of.packages, bioconductor.packages)
lapply(all.packages, FUN = function(X) {
  do.call("require", list(X))
})

source("../references/biostats.R")

Load sample info and gene annotation files

sample.info <- read.csv("../data/RCK-exp-design.csv", header=T, na.strings = NA)

load(file = "../references/P.plat.bestblast")
load(file = "../references/P.plat.blast")
load(file = "../references/P.plat.blast.GO")

genes <- read_delim(file = "../references/P.platypus_genes.bed", delim = "\t", col_names = c("chrom", "start", "end", "geneID"))

## Rows: 28287 Columns: 4
## -- Column specification --------------------------------------------------------
## Delimiter: "\t"
## chr (2): chrom, geneID
## dbl (2): start, end
## 
## i Use `spec()` to retrieve the full column specification for this data.
## i Specify the column types or set `show_col_types = FALSE` to quiet this message.

Must close genofile if it’s already open before running

#snpgdsClose(genofile)

Use SNPRelate to filter vcf files. Remove:

• Select biallelic loci only
• Loci with minor allele frequency < 5%
• Select loci that are present across all samples (missing.rate=0)

vcf.fn <- "../results/genotype/rkc_rnaseq_genotypes-filtered-true.vcf.gz"
SNPRelate::snpgdsVCF2GDS(vcf.fn, "../results/genotype/genotypes.gds", method="biallelic.only")

## Start file conversion from VCF to SNP GDS ...
## Method: extracting biallelic SNPs
## Number of samples: 43
## Parsing "../results/genotype/rkc_rnaseq_genotypes-filtered-true.vcf.gz" ...
##  import 919505 variants.
## + genotype   { Bit2 43x919505, 9.4M } *
## Optimize the access efficiency ...
## Clean up the fragments of GDS file:
##     open the file '../results/genotype/genotypes.gds' (13.9M)
##     # of fragments: 165
##     save to '../results/genotype/genotypes.gds.tmp'
##     rename '../results/genotype/genotypes.gds.tmp' (13.9M, reduced: 1.7K)
##     # of fragments: 20

snpgdsSummary("../results/genotype/genotypes.gds")

## The file name: C:\Users\laura.spencer\Work\red-king_RNASeq-2022\results\genotype\genotypes.gds 
## The total number of samples: 43 
## The total number of SNPs: 919505 
## SNP genotypes are stored in SNP-major mode (Sample X SNP).

Open gds and check out genofile contents

(genofile <- snpgdsOpen("../results/genotype/genotypes.gds"))

## File: C:\Users\laura.spencer\Work\red-king_RNASeq-2022\results\genotype\genotypes.gds (13.9M)
## +    [  ] *
## |--+ sample.id   { Str8 43 LZMA_ra(29.9%), 193B }
## |--+ snp.id   { Int32 919505 LZMA_ra(6.21%), 223.1K }
## |--+ snp.rs.id   { Str8 919505 LZMA_ra(0.03%), 285B }
## |--+ snp.position   { Int32 919505 LZMA_ra(42.7%), 1.5M }
## |--+ snp.chromosome   { Str8 919505 LZMA_ra(0.03%), 4.2K }
## |--+ snp.allele   { Str8 919505 LZMA_ra(12.1%), 433.9K }
## |--+ genotype   { Bit2 43x919505, 9.4M } *
## \--+ snp.annot   [  ]
##    |--+ qual   { Float32 919505 LZMA_ra(65.4%), 2.3M }
##    \--+ filter   { Str8 919505 LZMA_ra(0.02%), 829B }

Prune/Clean SNPs

• Remove those in linkage-disequilibrium
• Remove those with Minor Allele Frequency <5%
• Remove those that are missing from 20% or more of samples

snpset <- snpgdsLDpruning(genofile, maf=.05, missing.rate=0.20, autosome.only=FALSE)

## SNP pruning based on LD:
## Excluding 918,150 SNPs (monomorphic: TRUE, MAF: 0.05, missing rate: 0.2)
##     # of samples: 43
##     # of SNPs: 1,355
##     using 1 thread
##     sliding window: 500,000 basepairs, Inf SNPs
##     |LD| threshold: 0.2
##     method: composite
## Chromosome HiC_scaffold_1: 0.09%, 3/3,379
## Chromosome HiC_scaffold_10: 0.11%, 6/5,432
## Chromosome HiC_scaffold_100: 0.13%, 13/9,741
## Chromosome HiC_scaffold_101: 0.07%, 4/6,016
## Chromosome HiC_scaffold_102: 0.13%, 13/10,263
## Chromosome HiC_scaffold_1027: 2.63%, 1/38
## Chromosome HiC_scaffold_103: 0.11%, 16/14,948
## Chromosome HiC_scaffold_104: 0.11%, 12/11,362
## Chromosome HiC_scaffold_11: 0.12%, 9/7,301
## Chromosome HiC_scaffold_12: 0.10%, 9/9,355
## Chromosome HiC_scaffold_13: 0.11%, 9/8,325
## Chromosome HiC_scaffold_14: 0.08%, 4/4,824
## Chromosome HiC_scaffold_15: 0.16%, 27/16,693
## Chromosome HiC_scaffold_16: 0.05%, 6/11,696
## Chromosome HiC_scaffold_17: 0.11%, 11/10,389
## Chromosome HiC_scaffold_18: 0.13%, 13/9,821
## Chromosome HiC_scaffold_19: 0.12%, 20/16,126
## Chromosome HiC_scaffold_2: 0.14%, 13/9,174
## Chromosome HiC_scaffold_20: 0.11%, 7/6,534
## Chromosome HiC_scaffold_21: 0.11%, 18/15,780
## Chromosome HiC_scaffold_22: 0.23%, 15/6,506
## Chromosome HiC_scaffold_23: 0.12%, 9/7,757
## Chromosome HiC_scaffold_24: 0.05%, 5/9,753
## Chromosome HiC_scaffold_25: 0.14%, 7/4,934
## Chromosome HiC_scaffold_26: 0.11%, 17/15,336
## Chromosome HiC_scaffold_27: 0.11%, 10/9,390
## Chromosome HiC_scaffold_28: 0.12%, 13/11,269
## Chromosome HiC_scaffold_29: 0.16%, 15/9,528
## Chromosome HiC_scaffold_3: 0.16%, 11/6,962
## Chromosome HiC_scaffold_30: 0.09%, 6/6,965
## Chromosome HiC_scaffold_31: 0.13%, 6/4,514
## Chromosome HiC_scaffold_32: 0.11%, 5/4,498
## Chromosome HiC_scaffold_33: 0.16%, 6/3,838
## Chromosome HiC_scaffold_34: 0.07%, 3/4,031
## Chromosome HiC_scaffold_35: 0.20%, 11/5,561
## Chromosome HiC_scaffold_36: 0.33%, 10/3,023
## Chromosome HiC_scaffold_37: 0.16%, 8/4,853
## Chromosome HiC_scaffold_38: 0.25%, 13/5,302
## Chromosome HiC_scaffold_39: 0.20%, 7/3,450
## Chromosome HiC_scaffold_4: 0.09%, 7/7,531
## Chromosome HiC_scaffold_40: 0.35%, 10/2,850
## Chromosome HiC_scaffold_41: 0.14%, 8/5,877
## Chromosome HiC_scaffold_42: 0.18%, 11/6,018
## Chromosome HiC_scaffold_43: 0.15%, 16/10,950
## Chromosome HiC_scaffold_44: 0.06%, 2/3,310
## Chromosome HiC_scaffold_45: 0.08%, 8/9,509
## Chromosome HiC_scaffold_46: 0.05%, 9/18,080
## Chromosome HiC_scaffold_47: 0.10%, 4/4,165
## Chromosome HiC_scaffold_48: 0.13%, 12/9,596
## Chromosome HiC_scaffold_49: 0.15%, 13/8,545
## Chromosome HiC_scaffold_5: 0.14%, 8/5,859
## Chromosome HiC_scaffold_50: 0.08%, 11/13,554
## Chromosome HiC_scaffold_51: 0.15%, 15/10,072
## Chromosome HiC_scaffold_52: 0.33%, 31/9,298
## Chromosome HiC_scaffold_53: 0.09%, 6/6,831
## Chromosome HiC_scaffold_54: 0.15%, 12/7,956
## Chromosome HiC_scaffold_55: 0.26%, 12/4,530
## Chromosome HiC_scaffold_56: 0.05%, 10/20,020
## Chromosome HiC_scaffold_57: 0.08%, 11/14,193
## Chromosome HiC_scaffold_58: 0.15%, 13/8,410
## Chromosome HiC_scaffold_59: 0.15%, 8/5,467
## Chromosome HiC_scaffold_6: 0.18%, 9/5,074
## Chromosome HiC_scaffold_60: 0.10%, 17/16,819
## Chromosome HiC_scaffold_61: 0.12%, 6/4,820
## Chromosome HiC_scaffold_62: 0.10%, 8/8,053
## Chromosome HiC_scaffold_63: 0.13%, 4/3,179
## Chromosome HiC_scaffold_64: 0.15%, 7/4,621
## Chromosome HiC_scaffold_65: 0.11%, 11/10,152
## Chromosome HiC_scaffold_66: 0.11%, 12/11,257
## Chromosome HiC_scaffold_67: 0.09%, 9/9,945
## Chromosome HiC_scaffold_68: 0.06%, 6/10,100
## Chromosome HiC_scaffold_69: 0.07%, 12/17,745
## Chromosome HiC_scaffold_6951: 0.23%, 6/2,622
## Chromosome HiC_scaffold_6958: 0.27%, 1/373
## Chromosome HiC_scaffold_7: 0.15%, 7/4,741
## Chromosome HiC_scaffold_70: 0.04%, 2/4,661
## Chromosome HiC_scaffold_71: 0.17%, 7/4,081
## Chromosome HiC_scaffold_72: 0.12%, 11/9,556
## Chromosome HiC_scaffold_73: 0.20%, 7/3,441
## Chromosome HiC_scaffold_74: 0.14%, 16/11,377
## Chromosome HiC_scaffold_75: 0.15%, 2/1,367
## Chromosome HiC_scaffold_76: 0.08%, 10/11,983
## Chromosome HiC_scaffold_77: 0.12%, 9/7,438
## Chromosome HiC_scaffold_78: 0.08%, 12/14,230
## Chromosome HiC_scaffold_79: 0.14%, 33/23,329
## Chromosome HiC_scaffold_8: 0.20%, 13/6,507
## Chromosome HiC_scaffold_80: 0.14%, 16/11,310
## Chromosome HiC_scaffold_81: 0.10%, 19/19,617
## Chromosome HiC_scaffold_82: 0.09%, 10/11,275
## Chromosome HiC_scaffold_83: 0.09%, 4/4,480
## Chromosome HiC_scaffold_84: 0.10%, 17/17,064
## Chromosome HiC_scaffold_85: 0.09%, 10/10,944
## Chromosome HiC_scaffold_86: 0.16%, 14/8,564
## Chromosome HiC_scaffold_87: 0.16%, 7/4,283
## Chromosome HiC_scaffold_88: 0.14%, 9/6,616
## Chromosome HiC_scaffold_89: 0.12%, 12/10,388
## Chromosome HiC_scaffold_9: 0.15%, 12/7,962
## Chromosome HiC_scaffold_90: 0.14%, 16/11,817
## Chromosome HiC_scaffold_91: 0.13%, 6/4,639
## Chromosome HiC_scaffold_92: 0.05%, 9/17,016
## Chromosome HiC_scaffold_93: 0.25%, 10/4,019
## Chromosome HiC_scaffold_94: 0.06%, 9/14,019
## Chromosome HiC_scaffold_946: 0.27%, 1/372
## Chromosome HiC_scaffold_95: 0.11%, 9/8,341
## Chromosome HiC_scaffold_96: 0.10%, 7/6,741
## Chromosome HiC_scaffold_97: 0.12%, 9/7,479
## Chromosome HiC_scaffold_98: 0.18%, 8/4,454
## Chromosome HiC_scaffold_99: 0.09%, 6/6,788
## 1,085 markers are selected in total.

#snpset.id <- unlist(unname(snpset))
snpset.id <- unlist(snpset)

length(snpset.id) SNPs remain after all filtering steps

IMPORTNAT NOTE:

Since my .vcf doesn’t include unique SNP IDs, they are assigned unique integers ids by SNPRelate, where 1=first row in .vcf

Extract data from the gds file to identify snp locations

# take out integer-assigned snp id 
snp.id <- read.gdsn(index.gdsn(genofile, "snp.id"))

# # take out unique snp id from original VCF 
# snp.id.rs <- read.gdsn(index.gdsn(genofile, "snp.rs.id")) #<-- no unique snp id in original VCF file

# take out snp chromosome
chrom <- read.gdsn(index.gdsn(genofile, "snp.chromosome"))

# take out snp position on chromosome
pos <- read.gdsn(index.gdsn(genofile, "snp.position"))

# take out snp allele
allele <- read.gdsn(index.gdsn(genofile, "snp.allele"))

# Combine data into dataframe
genofile.data <- (cbind(snp.id, chrom, pos, allele)) %>% as.data.frame()
head(genofile.data)

##   snp.id          chrom    pos allele
## 1      1 HiC_scaffold_1 248053    A/C
## 2      2 HiC_scaffold_1 523809    G/A
## 3      3 HiC_scaffold_1 562576    T/C
## 4      4 HiC_scaffold_1 562622    T/A
## 5      5 HiC_scaffold_1 691908    T/C
## 6      6 HiC_scaffold_1 691941    A/C

# Filter for snps retained by SNPRelate after filtering and pruning and annotate
# Also add "start" and "end" columns for use with bed_intersect

genofile.snpset.data <- genofile.data %>% filter(snp.id %in% snpset.id) %>% 
  mutate(pos=as.numeric(pos)) %>% mutate(start=pos-1, end=pos+1)

#annotate genes containing SNPs 
(genofile.snpset.annot <- bed_intersect(x=genes, y=genofile.snpset.data, 
                                        suffix = c(".gene", ".snp")) %>% 
  left_join(P.plat.bestblast %>% select(id_gtf, hit_acc, hit_desc, e_value), by = c("geneID.gene"="id_gtf")) %>%
    left_join(P.plat.blast %>% select(geneID, SPID, evalue), by=c("geneID.gene"="geneID")) %>%
    left_join(P.plat.blast.GO %>% select(gene_id, protein_names, gene_ontology_biological_process), by=c("geneID.gene"="gene_id"))) 

## Adding missing grouping variables: `Chr`, `Start`, `End`

## # A tibble: 219 x 20
##    chrom start.gene end.gene geneID.gene snp.id.snp pos.snp allele.snp start.snp
##    <chr>      <dbl>    <dbl> <chr>       <chr>        <dbl> <chr>          <dbl>
##  1 HiC_~    2910342  2972113 evm.TU.HiC~ 1154        2.97e6 G/T          2970225
##  2 HiC_~    3781588  3889899 evm.TU.HiC~ 1409        3.80e6 C/G          3795099
##  3 HiC_~    3842675  3867362 evm.TU.HiC~ 5149        3.86e6 C/T          3864354
##  4 HiC_~    5812471  5861708 evm.TU.HiC~ 6085        5.84e6 C/T          5843372
##  5 HiC_~   13897140 13930596 evm.TU.HiC~ 19974       1.39e7 C/T         13897148
##  6 HiC_~   17412158 17447290 evm.TU.HiC~ 31070       1.74e7 T/C         17442642
##  7 HiC_~   11410480 11536332 evm.TU.HiC~ 28706       1.14e7 C/T         11446041
##  8 HiC_~   15897444 15934626 evm.TU.HiC~ 29976       1.59e7 T/G         15918693
##  9 HiC_~     596621   661895 evm.TU.HiC~ 35208       6.02e5 G/T           601714
## 10 HiC_~   49562504 49597851 evm.TU.HiC~ 46641       4.96e7 A/C         49592021
## # ... with 209 more rows, and 12 more variables: end.snp <dbl>, .overlap <int>,
## #   hit_acc <chr>, hit_desc <chr>, e_value <dbl>, Chr <chr>, Start <dbl>,
## #   End <dbl>, SPID <chr>, evalue <dbl>, protein_names <chr>,
## #   gene_ontology_biological_process <chr>

save(genofile.snpset.annot, file="../results/genotype/genofile.snpset.annot")

PCA

# PCA using SNPRelate 
pca <- snpgdsPCA(genofile, num.thread=2, autosome.only=FALSE, verbose = TRUE, 
                 need.genmat = TRUE, snp.id =snpset.id )

## Principal Component Analysis (PCA) on genotypes:
## Excluding 0 SNP (monomorphic: TRUE, MAF: NaN, missing rate: NaN)
##     # of samples: 43
##     # of SNPs: 1,085
##     using 2 threads
##     # of principal components: 32
## PCA:    the sum of all selected genotypes (0,1,2) = 38311
## CPU capabilities: Double-Precision SSE2
## Mon Apr 04 11:44:48 2022    (internal increment: 50960)
## 
[..................................................]  0%, ETC: ---        
[==================================================] 100%, completed, 0s
## Mon Apr 04 11:44:48 2022    Begin (eigenvalues and eigenvectors)
## Mon Apr 04 11:44:48 2022    Done.

pc.percent <- pca$varprop*100
head(round(pc.percent, 2)) #This is the proportion variance explained by each PC 

## [1] 7.38 6.04 4.53 4.41 3.54 2.98

tab <- data.frame(sample.id = pca$sample.id,
    PC1.gen = pca$eigenvect[,1],    # the first eigenvector
    PC2.gen = pca$eigenvect[,2],    # the second eigenvector
    PC3.gen = pca$eigenvect[,3],    # the third eigenvector
    PC4.gen = pca$eigenvect[,4],    # the fourth eigenvector
    PC5.gen = pca$eigenvect[,5],    # the fifth eigenvector
    stringsAsFactors = FALSE)

# PCA using prcomp etc., but NOTE that I pull the covariance matrix from the SNPRelate PCA command  
pca.princomp.gen <- princomp(covmat=pca$genmat, scores=T, cor = F) #specify "covmat" because input is a covariance matrix (not raw data!)
summary(pca.princomp.gen)

## Importance of components:
##                           Comp.1     Comp.2     Comp.3    Comp.4    Comp.5
## Standard deviation     1.7609224 1.59328104 1.37966351 1.3608923 1.2189634
## Proportion of Variance 0.0738297 0.06044153 0.04532075 0.0440959 0.0353779
## Cumulative Proportion  0.0738297 0.13427124 0.17959199 0.2236879 0.2590658
##                            Comp.6     Comp.7     Comp.8     Comp.9    Comp.10
## Standard deviation     1.11921352 1.11085182 1.09117071 1.07115188 1.05625688
## Proportion of Variance 0.02982474 0.02938076 0.02834889 0.02731825 0.02656378
## Cumulative Proportion  0.28889052 0.31827128 0.34662017 0.37393842 0.40050220
##                           Comp.11    Comp.12    Comp.13    Comp.14    Comp.15
## Standard deviation     1.04070166 1.01862965 0.99699440 0.99423362 0.97938836
## Proportion of Variance 0.02578714 0.02470491 0.02366662 0.02353573 0.02283813
## Cumulative Proportion  0.42628934 0.45099425 0.47466087 0.49819659 0.52103472
##                           Comp.16    Comp.17    Comp.18   Comp.19    Comp.20
## Standard deviation     0.97256307 0.96233073 0.95340204 0.9455444 0.93936279
## Proportion of Variance 0.02252093 0.02204953 0.02164227 0.0212870 0.02100958
## Cumulative Proportion  0.54355565 0.56560519 0.58724746 0.6085345 0.62954404
##                           Comp.21    Comp.22    Comp.23    Comp.24    Comp.25
## Standard deviation     0.93096798 0.91385628 0.90635280 0.90222933 0.88929695
## Proportion of Variance 0.02063575 0.01988413 0.01955894 0.01938138 0.01882974
## Cumulative Proportion  0.65017979 0.67006392 0.68962286 0.70900423 0.72783397
##                           Comp.26    Comp.27    Comp.28    Comp.29   Comp.30
## Standard deviation     0.88446492 0.87532622 0.86810790 0.86537120 0.8619020
## Proportion of Variance 0.01862567 0.01824276 0.01794313 0.01783017 0.0176875
## Cumulative Proportion  0.74645964 0.76470240 0.78264553 0.80047570 0.8181632
##                           Comp.31    Comp.32    Comp.33    Comp.34    Comp.35
## Standard deviation     0.83704102 0.83544051 0.82912680 0.82005135 0.81554079
## Proportion of Variance 0.01668185 0.01661812 0.01636789 0.01601153 0.01583588
## Cumulative Proportion  0.83484505 0.85146317 0.86783106 0.88384259 0.89967846
##                           Comp.36    Comp.37    Comp.38    Comp.39   Comp.40
## Standard deviation     0.80427816 0.79714408 0.78797199 0.77977189 0.7655316
## Proportion of Variance 0.01540151 0.01512949 0.01478333 0.01447724 0.0139533
## Cumulative Proportion  0.91507997 0.93020946 0.94499279 0.95947004 0.9734233
##                           Comp.41    Comp.42      Comp.43
## Standard deviation     0.75019505 0.74392696 1.071488e-09
## Proportion of Variance 0.01339982 0.01317684 2.733540e-20
## Cumulative Proportion  0.98682316 1.00000000 1.000000e+00

pca.eigenval(pca.princomp.gen)[2,1:5] #The Proporation of Variance (aka %variance)  

## Importance of components:

## [1] 0.0738297 0.0604415 0.0453207 0.0440959 0.0353779

screeplot(pca.princomp.gen, bstick=TRUE) #PC axes aren't super sign. - just look at PC1 

tab <- data.frame(sample.id = pca$sample.id,
    PC1.gen = pca.princomp.gen$loadings[,1],    # the first eigenvector
    PC2.gen = pca.princomp.gen$loadings[,2],    # the second eigenvector
    PC3.gen = pca.princomp.gen$loadings[,3],    # the third eigenvector
    PC4.gen = pca.princomp.gen$loadings[,4],    # the fourth eigenvector
    PC5.gen = pca.princomp.gen$loadings[,5],    # the fourth eigenvector
    stringsAsFactors = FALSE)

shapiro.test(pca.princomp.gen$loadings) #Multivariate normality assumption not met

## 
##  Shapiro-Wilk normality test
## 
## data:  pca.princomp.gen$loadings
## W = 0.99471, p-value = 3.756e-06

tab.annot.gen <- left_join(tab, sample.info, by=c("sample.id"="Sample")) %>% droplevels() %>%
  mutate(Treatment=as.factor(Treatment))
group <- as.factor(tab.annot.gen$Treatment)

Per-sample missing rate for retained SNPs

RV <- snpgdsSampMissRate(genofile, snp.id = snpset.id)
names(RV) <- pca$sample.id

barplot(RV, las = 2, cex.names = .5, col = c("#2c7bb6", "#d7191c", "#fdae61")[group])
title(ylab = "Sample Missingness (%)")
legend("top", legend=levels(group), col=c("#2c7bb6", "#d7191c", "#fdae61"), pch=19, ncol=3, cex=0.6, pt.cex=1)

# Add missingness rate to annotated PCA results file
tab.annot.gen$missingness <- RV

tab.annot.gen %>% mutate(Treatment=factor(Treatment, levels=c("Ambient", "Moderate", "Low"))) %>%
  ggplot(aes(x=Treatment, y=missingness, fill=Treatment)) + geom_violin(alpha=0.75) + 
  geom_jitter(col="black", width = 0.15) +
  theme_minimal() +
  stat_summary(fun.y=mean, geom="point", shape=8, size=4, color="black", fill="black") + 
    scale_fill_manual(values=c(Ambient="#2c7bb6", 
                               Moderate="#fdae61", Low="#d7191c"), name="pH Treatment") +
  ggtitle(paste("% Missing Rate for retained SNPs, by pH Treatment ", 
                "(No. loci = ", length(snpset.id), ")", sep="")) +
    geom_text(data=tab.annot.gen %>% group_by(Treatment) %>% 
                summarize(mean=mean(missingness)), 
              aes(x=Treatment, y=c(0.45, 0.31, 0.39), label=round(mean, 2)))

## Warning: `fun.y` is deprecated. Use `fun` instead.

# There's a lot more missing SNP data from the ambient groups

Examine first 5 PC axes

# PC1 X PC2
ggplot(tab.annot.gen, aes(x=PC1.gen, y=PC2.gen, size=missingness)) + 
  geom_point(aes(col=Treatment), alpha=0.75) + #size=3.5, 
  theme_minimal() + ggtitle("Genetic Structure, PC1xPC2") + 
  xlab(paste("PC1 (", round(pc.percent[1], digits = 2), "%)", sep="")) + 
  ylab(paste("PC2 (", round(pc.percent[2], digits = 2), "%)", sep="")) + 
  theme(legend.position = "right") + 
  scale_color_manual(values=c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"), name="pH Treatment") +
  guides(colour = guide_legend(override.aes = list(size=3.5))) + 
  stat_ellipse(aes(col=Treatment), size=0.3)

# PC1 X PC3
ggplot(tab.annot.gen, aes(x=PC3.gen, y=PC1.gen, size=missingness)) + 
  geom_point(aes(col=Treatment), alpha=0.75) + 
  theme_minimal() + ggtitle("Genetic Structure, PC1xPC3") + 
  xlab(paste("PC3 (", round(pc.percent[3], digits = 2), "%)", sep="")) + 
  ylab(paste("PC1 (", round(pc.percent[1], digits = 2), "%)", sep="")) + 
  theme(legend.position = "right") + 
  scale_color_manual(values=c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"), name="pH Treatment") +
  guides(colour = guide_legend(override.aes = list(size=3.5))) + 
  stat_ellipse(aes(col=Treatment), size=0.3)

# PC1 X PC4
ggplot(tab.annot.gen, aes(x=PC4.gen, y=PC1.gen, size=missingness)) + 
  geom_point(aes(col=Treatment), alpha=0.75) + 
  theme_minimal() + ggtitle("Genetic Structure, PC1xPC4") + 
  xlab(paste("PC4 (", round(pc.percent[4], digits = 2), "%)", sep="")) + 
  ylab(paste("PC1 (", round(pc.percent[1], digits = 2), "%)", sep="")) + 
  theme(legend.position = "right") + 
  scale_color_manual(values=c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"), name="pH Treatment") +
  guides(colour = guide_legend(override.aes = list(size=3.5))) + 
  stat_ellipse(aes(col=Treatment), size=0.3)

# PC1 X PC5
ggplot(tab.annot.gen, aes(x=PC5.gen, y=PC1.gen, size=missingness)) + 
  geom_point(aes(col=Treatment), alpha=0.75) + 
  theme_minimal() + ggtitle("Genetic Structure, PC1xPC4") + 
  xlab(paste("PC5 (", round(pc.percent[5], digits = 2), "%)", sep="")) + 
  ylab(paste("PC1 (", round(pc.percent[1], digits = 2), "%)", sep="")) + 
  theme(legend.position = "right") + 
  scale_color_manual(values=c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"), name="pH Treatment") +
  guides(colour = guide_legend(override.aes = list(size=3.5))) + 
  stat_ellipse(aes(col=Treatment), size=0.3)

# PC2 X PC3
ggplot(tab.annot.gen, aes(x=PC2.gen, y=PC3.gen, size=missingness)) + 
  geom_point(aes(col=Treatment), alpha=0.75) + 
  theme_minimal() + ggtitle("Genetic Structure, PC2xPC3") + 
  xlab(paste("PC2 (", round(pc.percent[2], digits = 2), "%)", sep="")) + 
  ylab(paste("PC3 (", round(pc.percent[3], digits = 2), "%)", sep="")) + 
  theme(legend.position = "right") + 
  scale_color_manual(values=c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"), name="pH Treatment") +
  guides(colour = guide_legend(override.aes = list(size=3.5))) + 
  stat_ellipse(aes(col=Treatment), size=0.3)

# PC1 X PC2 color coded by tank 
ggplot(tab.annot.gen, aes(x=PC1.gen, y=PC2.gen, size=missingness)) + 
  geom_point(aes(col=as.factor(Tank)), alpha=0.75) + 
  theme_minimal() + ggtitle("Genetic Structure, PC1xPC2 (showing tank no.)") + 
  xlab(paste("PC1 (", round(pc.percent[1], digits = 2), "%)", sep="")) + 
  ylab(paste("PC2 (", round(pc.percent[2], digits = 2), "%)", sep="")) + 
  theme(legend.position = "right") + 
  guides(colour = guide_legend(override.aes = list(size=3.5)))

save(tab.annot.gen, file="../results/genotype/tab.annot.gen")

ggplot(tab.annot.gen %>% pivot_longer(cols=starts_with("PC"), names_to = "PC.axis", values_to = "PC.loc"), 
       aes(x=abs(PC.loc), y=missingness, col=Treatment)) + geom_point(alpha=0.75) +
  theme_minimal() + 
  ggtitle("Correlation between % of SNPs missing (x) and abs(PC scores) (y) for each sample\nQuestion: do samples with many missing SNPs congregate near 0?") + 
    theme(legend.position = "bottom") + stat_smooth(geom="smooth", method="lm", se=FALSE, size=0.5, aes(group=Treatment)) +
    scale_color_manual(values=c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"), name="pH Treatment") +
  guides(colour = guide_legend(override.aes = list(size=3.5))) + 
  stat_cor(method = "pearson", show.legend=FALSE, size=2.5) +
  facet_wrap(~PC.axis, scales = "free")

## `geom_smooth()` using formula 'y ~ x'

Distribution of genetic covariance matrix

pca$genmat %>% hist(breaks=100, main="Histogram of genetic covariance\nfrom SNPRelate")

## Relatedness Analysis using SNPRelate

ID1: the id of the first individual ID2: the id of the second individual k0: the probability of sharing ZERO alleles k1: the probability of sharing ONE alleles kinship: kinship coefficient

ibd.mle <- snpgdsIBDMLE(genofile, snp.id=snpset.id, num.thread=2, autosome.only = F)

## Identity-By-Descent analysis (MLE) on genotypes:
## Excluding 0 SNP (monomorphic: TRUE, MAF: NaN, missing rate: NaN)
##     # of samples: 43
##     # of SNPs: 1,085
##     using 2 threads
## MLE IBD:    the sum of all selected genotypes (0,1,2) = 38311
## MLE IBD: Mon Apr 04 11:44:52 2022    0%

# Kinship metric
ibd.mle.coeff <- snpgdsIBDSelection(ibd.mle)
head(ibd.mle.coeff)

##              ID1            ID2        k0           k1 niter    kinship
## 1 Tank_10_Crab_1 Tank_10_Crab_2 0.8665374 1.019817e-06    59 0.06673106
## 2 Tank_10_Crab_1 Tank_10_Crab_3 0.9758481 4.886309e-07    82 0.01207585
## 3 Tank_10_Crab_1 Tank_11_Crab_1 0.9583867 4.321570e-06    91 0.02080557
## 4 Tank_10_Crab_1 Tank_11_Crab_2 0.9031104 2.926246e-06    80 0.04844408
## 5 Tank_10_Crab_1 Tank_11_Crab_3 0.6841462 5.941910e-02   248 0.14307214
## 6 Tank_10_Crab_1 Tank_13_Crab_1 0.9231537 5.672827e-06   105 0.03842175

hist(ibd.mle.coeff$kinship, breaks = 100)

kinship <- ibd.mle.coeff %>% 
  left_join(sample.info %>% select(Sample, Treatment), by=c("ID1"="Sample")) %>% 
  rename("Treatment"="Treatment1") %>%
  left_join(sample.info %>% select(Sample, Treatment), by=c("ID2"="Sample")) %>% 
  rename("Treatment"="Treatment2") %>%
  mutate(contrast=case_when(
      Treatment1 == Treatment2 ~ "same",
      Treatment1 != Treatment2 ~ "different")) %>%
  mutate(contrast.pairwise=case_when(
      Treatment1 == "Ambient" & Treatment2 == "Ambient" ~ "Amb.Amb",
      Treatment2 == "Ambient" & Treatment1 == "Ambient" ~ "Amb.Amb",
      Treatment1 == "Moderate" & Treatment2 == "Moderate" ~ "Mod.Mod",
      Treatment2 == "Moderate" & Treatment1 == "Moderate" ~ "Mod.Mod",
      Treatment1 == "Low" & Treatment2 == "Low" ~ "Low.Low",
      Treatment2 == "Low" & Treatment1 == "Low" ~ "Low.Low",
      Treatment1 == "Ambient" & Treatment2 == "Moderate" ~ "Amb.Mod",
      Treatment2 == "Ambient" & Treatment1 == "Moderate" ~ "Amb.Mod",
      Treatment1 == "Ambient" & Treatment2 == "Low" ~ "Amb.Low",
      Treatment2 == "Ambient" & Treatment1 == "Low" ~ "Amb.Low",
      Treatment1 == "Moderate" & Treatment2 == "Low" ~ "Mod.Low",
      Treatment2 == "Moderate" & Treatment1 == "Low" ~ "Mod.Low")) %>% 
  mutate(contrast.pairwise=factor(contrast.pairwise, levels=c("Amb.Amb", "Mod.Mod", "Low.Low", "Amb.Mod", "Amb.Low", "Mod.Low")))

ggplot(kinship, aes(x=contrast.pairwise, y=kinship, fill=contrast.pairwise)) + 
  geom_violin() + 
  theme_minimal() + 
  ggtitle("Kindship coefficient by treatment contrast") +
  geom_text(data=kinship %>% group_by(contrast.pairwise) %>% 
                summarize(mean=mean(kinship)), 
              aes(x=contrast.pairwise, y=mean+.11, label=round(mean, 3)))

ggplot(kinship, aes(x=contrast, y=kinship, fill=contrast)) + 
  geom_violin() + 
  theme_minimal() + 
  ggtitle("Kindship coefficient for individuals from \ndifferent treatment or same treatment") +
  geom_text(data=kinship %>% group_by(contrast) %>% 
                summarize(mean=mean(kinship)), 
              aes(x=contrast, y=mean+.12, label=round(mean, 4)))

cluster analysis

Use SNPRelate to calculate the fraction of identity by state for each pair of samples

# To perform cluster analysis on the matrix of genome-wide IBS pairwise distances, 
# and determine the groups by a permutation score. 
# Result= only 1 group (?)
ibs.hc <- snpgdsHCluster(snpgdsIBS(genofile, snp.id=snpset.id, num.thread=2, autosome.only=FALSE))

## Identity-By-State (IBS) analysis on genotypes:
## Excluding 0 SNP (monomorphic: TRUE, MAF: NaN, missing rate: NaN)
##     # of samples: 43
##     # of SNPs: 1,085
##     using 2 threads
## IBS:    the sum of all selected genotypes (0,1,2) = 38311
## Mon Apr 04 11:44:53 2022    (internal increment: 65536)
## 
[..................................................]  0%, ETC: ---        
[==================================================] 100%, completed, 0s
## Mon Apr 04 11:44:53 2022    Done.

rv <- snpgdsCutTree(ibs.hc)

## Determine groups by permutation (Z threshold: 15, outlier threshold: 5):
## Create 1 groups.

plot(rv$dendrogram, leaflab="none", main="HapMap Phase II")

# Determine groups of individuals by treatment information
rv2 <- snpgdsCutTree(ibs.hc, samp.group=tab.annot.gen$Treatment)

## Create 3 groups.

plot(rv2$dendrogram, leaflab="none", main="HapMap Phase II")
legend("bottom", legend=levels(group), col=1:nlevels(group), pch=19, ncol=3, cex=0.6, pt.cex=1)

Genetic relationship matrix

Allele frequencies

AF.ambient <- snpgdsSNPRateFreq(genofile, snp.id=snpset.id, sample.id=subset(tab.annot.gen, Treatment=="Ambient")$sample.id, with.id = TRUE)

AF.moderate <- snpgdsSNPRateFreq(genofile, snp.id=snpset.id, sample.id=subset(tab.annot.gen, Treatment=="Moderate")$sample.id, with.id = TRUE)

AF.low <- snpgdsSNPRateFreq(genofile, snp.id=snpset.id, sample.id=subset(tab.annot.gen, Treatment=="Low")$sample.id, with.id = TRUE)

AFs <- rbind(
  do.call(cbind.data.frame, AF.ambient[c("snp.id", "AlleleFreq", "MinorFreq", "MissingRate")]) %>% 
    mutate(Treatment=as.factor("Ambient")), 
do.call(cbind.data.frame, AF.moderate[c("snp.id", "AlleleFreq", "MinorFreq", "MissingRate")]) %>% 
  mutate(Treatment=as.factor("Moderate")), 
do.call(cbind.data.frame, AF.low[c("snp.id", "AlleleFreq", "MinorFreq", "MissingRate")]) %>% 
  mutate(Treatment=as.factor("Low")))

Major allele frequency distribution by treatment

ggplot(AFs, aes(x=Treatment, y=AlleleFreq, fill=Treatment)) + geom_violin(trim = F, alpha=0.5) + 
  theme_minimal() + 
  stat_summary(fun.y=mean, geom="point", shape=8, size=4, color="black", fill="black") + 
  xlab("pH exposure") + ylab("Allele Frequency") +
  scale_fill_manual(values = c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c")) +
  ggtitle(paste("Major Allele Frequency by pH Treatment\n", 
                "(No. loci = ", length(snpset.id), ")", sep="")) +
    geom_text(data=AFs %>% group_by(Treatment) %>% 
                summarize(mean=mean(AlleleFreq)), 
              aes(x=Treatment, y=mean+.1, label=round(mean, 3)))

## Warning: `fun.y` is deprecated. Use `fun` instead.

Minor allele frequency distribution by treatment

ggplot(AFs, aes(x=Treatment, y=MinorFreq, fill=Treatment)) + 
  geom_violin(trim = F, alpha=0.5) + 
  theme_minimal() + 
  stat_summary(fun.y=mean, geom="point", shape=8, size=4, color="black", fill="black") + 
  xlab("pH exposure") + ylab("Allele Frequency") +
  scale_fill_manual(values = c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c")) +
  ggtitle(paste("Minor Allele Frequency by pH Treatment\n", 
                "(No. loci = ", length(snpset.id), ")", sep="")) +
    geom_text(data=AFs %>% group_by(Treatment) %>% 
                summarize(mean=mean(MinorFreq)), 
              aes(x=Treatment, y=mean+.1, label=round(mean, 3)))

## Warning: `fun.y` is deprecated. Use `fun` instead.

Fst Calculations

Note: snpgdsFst() returns 5 things:

• sample IDs
• SNP ids (i.e. indices)
• “Fst” = weighted Fst estimate
• “MeanFst” = average of Fst estimates across all SNPs
• “FstSNP” = A vector of Fst for each SNP

# Fst among all 3 treatments 
Fst <- snpgdsFst(genofile, snp.id=snpset.id, 
                        sample.id=tab.annot.gen$sample.id, 
                  population=tab.annot.gen$Treatment,
    method="W&C84", autosome.only=FALSE, with.id = TRUE)

## Fst estimation on genotypes:
## Excluding 0 SNP (monomorphic: TRUE, MAF: NaN, missing rate: NaN)
##     # of samples: 43
##     # of SNPs: 1,085
## Method: Weir & Cockerham, 1984
## # of Populations: 3
##     Ambient (15), Low (15), Moderate (13)

paste("Weir and Cockerham mean Fst estimate, all treatments compared: ", round(Fst$MeanFst, 5))

## [1] "Weir and Cockerham mean Fst estimate, all treatments compared:  0.01975"

hist(Fst$FstSNP, breaks = 75, main="Fst distribution", col="dodgerblue3")

Fst.AM <- snpgdsFst(genofile, snp.id=snpset.id, 
                        sample.id=subset(tab.annot.gen, Treatment %in% c("Ambient", "Moderate"))$sample.id, 
               population=droplevels(subset(tab.annot.gen, Treatment %in% c("Ambient", "Moderate"))$Treatment),
    method="W&C84", autosome.only=FALSE, with.id = TRUE)

## Fst estimation on genotypes:
## Excluding 1 SNP (monomorphic: TRUE, MAF: NaN, missing rate: NaN)
##     # of samples: 28
##     # of SNPs: 1,084
## Method: Weir & Cockerham, 1984
## # of Populations: 2
##     Ambient (15), Moderate (13)

paste("Weir and Cockerham mean Fst estimate, Ambient vs Moderate: ", round(Fst.AM$MeanFst, 5))

## [1] "Weir and Cockerham mean Fst estimate, Ambient vs Moderate:  0.01906"

hist(Fst.AM$FstSNP, breaks = 75, main="Fst distribution", col="dodgerblue3")

Fst.AL <- snpgdsFst(genofile, snp.id=snpset.id, 
                        sample.id=subset(tab.annot.gen, Treatment %in% c("Ambient", "Low"))$sample.id, 
               population=droplevels(subset(tab.annot.gen, Treatment %in% c("Ambient", "Low"))$Treatment),
    method="W&C84", autosome.only=FALSE, with.id = TRUE)

## Fst estimation on genotypes:
## Excluding 0 SNP (monomorphic: TRUE, MAF: NaN, missing rate: NaN)
##     # of samples: 30
##     # of SNPs: 1,085
## Method: Weir & Cockerham, 1984
## # of Populations: 2
##     Ambient (15), Low (15)

paste("Weir and Cockerham mean Fst estimate, Ambient vs Low: ", round(Fst.AL$MeanFst, 5))

## [1] "Weir and Cockerham mean Fst estimate, Ambient vs Low:  0.01882"

hist(Fst.AL$FstSNP, breaks = 75, main="Fst distribution", col="dodgerblue3")

Fst.ML <- snpgdsFst(genofile, snp.id=snpset.id, 
                        sample.id=subset(tab.annot.gen, Treatment %in% c("Moderate", "Low"))$sample.id, 
               population=droplevels(subset(tab.annot.gen, Treatment %in% c("Moderate", "Low"))$Treatment),
    method="W&C84", autosome.only=FALSE, with.id = TRUE)

## Fst estimation on genotypes:
## Excluding 1 SNP (monomorphic: TRUE, MAF: NaN, missing rate: NaN)
##     # of samples: 28
##     # of SNPs: 1,084
## Method: Weir & Cockerham, 1984
## # of Populations: 2
##     Low (15), Moderate (13)

paste("Weir and Cockerham mean Fst estimate, Moderate vs Low: ", round(Fst.ML$MeanFst, 5))

## [1] "Weir and Cockerham mean Fst estimate, Moderate vs Low:  0.01507"

hist(Fst.ML$FstSNP, breaks = 75, main="Fst distribution", col="dodgerblue3")

Fsts <- rbind(
  
  do.call(cbind.data.frame, Fst[c("snp.id", "FstSNP")]) %>% mutate(contrast=as.factor("all")), 

  do.call(cbind.data.frame, Fst.AM[c("snp.id", "FstSNP")]) %>% mutate(contrast=as.factor("AvsM")),

  do.call(cbind.data.frame, Fst.AL[c("snp.id", "FstSNP")]) %>% mutate(contrast=as.factor("AvsL")),

  do.call(cbind.data.frame, Fst.ML[c("snp.id", "FstSNP")]) %>% mutate(contrast=as.factor("MvsL"))) 

ggplot(Fsts, aes(x=contrast, y=FstSNP, fill=contrast)) + geom_violin(trim = F) + 
  stat_summary(fun.y=mean, geom="point", shape=8, size=3.5, color="black", fill="black") +
  ggtitle(paste("SNP Fst, Adults by pCO2 treatment\n", "(No. loci = ", length(snpset.id), ")", sep="")) +
    geom_text(data=Fsts %>% group_by(contrast) %>% summarize(mean=mean(FstSNP)), aes(x=contrast, y=.65, label=round(mean, 3)))

## Warning: `fun.y` is deprecated. Use `fun` instead.

Identify SNPs with high Fst among populations, and use to re-generate PCAs

hist(Fsts$FstSNP, breaks = 100)

# Identify Fst outliers via boxplot 
out.min <- (boxplot(Fsts$FstSNP))$out %>% summary() %>% as.matrix() %>% t() %>% as.data.frame() %>% select("Min.") %>% unlist()

Fsts %>% filter(FstSNP >=out.min) %>% select(snp.id) %>% unique() %>% nrow() #42 loci that have outlying Fst values (>= 0.1680)

## [1] 150

snps.fst <- Fsts %>% filter(FstSNP >=out.min) %>% select(snp.id) %>% unique() %>% pull(snp.id)

Here is a list of SNPs that have the highest Fst values (outliers in boxplot, Fst>out.min) and are located within genes

genofile.snpset.annot %>% filter(snp.id.snp %in% snps.fst)

## # A tibble: 34 x 20
##    chrom start.gene end.gene geneID.gene snp.id.snp pos.snp allele.snp start.snp
##    <chr>      <dbl>    <dbl> <chr>       <chr>        <dbl> <chr>          <dbl>
##  1 HiC_~     596621   661895 evm.TU.HiC~ 35208       6.02e5 G/T           601714
##  2 HiC_~   62721886 62793739 evm.TU.HiC~ 106946      6.28e7 A/G         62771253
##  3 HiC_~   42153803 42166880 evm.TU.HiC~ 100254      4.22e7 T/C         42164945
##  4 HiC_~   63475710 63493992 evm.TU.HiC~ 107289      6.35e7 C/T         63493926
##  5 HiC_~   22787616 22804029 evm.TU.HiC~ 127818      2.28e7 A/G         22801071
##  6 HiC_~    4908579  4943516 evm.TU.HiC~ 192915      4.92e6 A/G          4918262
##  7 HiC_~   20580694 20611387 evm.TU.HiC~ 208389      2.06e7 A/C         20590562
##  8 HiC_~   39640378 39652156 evm.TU.HiC~ 250239      3.96e7 G/A         39640525
##  9 HiC_~   21261357 21263564 evm.TU.HiC~ 244640      2.13e7 C/T         21261389
## 10 HiC_~   34063545 34124323 evm.TU.HiC~ 270604      3.41e7 T/A         34124236
## # ... with 24 more rows, and 12 more variables: end.snp <dbl>, .overlap <int>,
## #   hit_acc <chr>, hit_desc <chr>, e_value <dbl>, Chr <chr>, Start <dbl>,
## #   End <dbl>, SPID <chr>, evalue <dbl>, protein_names <chr>,
## #   gene_ontology_biological_process <chr>

Identity-by-state

# lbls <- paste("PC", 1:4, "\n", format(pc.percent[1:4], digits=2), "%", sep="")
# pairs(pca$eigenvect[,1:4], col=as.color(tab.annot.gen$Treatment), labels=lbls, main="Colors = pH Treatment")
# pairs(pca$eigenvect[,1:4], col=as.color(tab.annot.gen$Tank), labels=lbls, main="Colors = Tank")

Multidimensional scaling analysis using Identity-By-State (IBS) proportion

ibs <- snpgdsIBS(genofile, snp.id=snpset.id, num.thread=2, autosome.only=FALSE)

## Identity-By-State (IBS) analysis on genotypes:
## Excluding 0 SNP (monomorphic: TRUE, MAF: NaN, missing rate: NaN)
##     # of samples: 43
##     # of SNPs: 1,085
##     using 2 threads
## IBS:    the sum of all selected genotypes (0,1,2) = 38311
## Mon Apr 04 11:44:55 2022    (internal increment: 65536)
## 
[..................................................]  0%, ETC: ---        
[==================================================] 100%, completed, 0s
## Mon Apr 04 11:44:55 2022    Done.

pop.idx <- order(tab.annot.gen$Treatment)

#par(xpd=TRUE)
#heatmap(ibs$ibs, col=terrain.colors(16), labCol=TRUE, 
#        RowSideColors=c("black","red","green","blue")[tab.annot.gen$pop_code])
#legend(0,-.05, legend=levels(tab.annot.gen$pop_code), pch="o", col=1:nlevels(tab.annot.gen$pop_code), 
#       text.col=1:nlevels(tab.annot.gen$pop_code), cex=.75, ncol=4)

#Perform multidimensional scaling analysis on the matrix of genome-wide IBS pairwise distances:
loc <- cmdscale(1 - ibs$ibs, k = 2)
x <- loc[, 1]; y <- loc[, 2]

plot(x, y, col=group, xlab = "", ylab = "",
    main = "Multidimensional Scaling Analysis (IBS)", cex=1.2, pch=16)
#text(x, y+.01, labels=tab.annot.gen$sample.id, cex=0.4, font=2, col=as.integer(group))
legend("topleft", legend=levels(group), pch="o", text.col=1:nlevels(group))

# # Identify crab in each cluster and add to annotation file 
# tab.annot.gen <- tab.annot.gen %>% left_join(
#   data.frame(x, y, sample=tab.annot.gen$sample.id) %>% 
#   mutate(ibs.cluster=case_when(x < -0.1 ~ "left",
#                    x > 0.1 ~"right",
#                    x < 0.05 & x > -0.1 & y > -0.1 ~ "middle",
#                    y < -0.1 ~ "bottom")) %>% select(sample, ibs.cluster),
#   by=c("sample.id"="sample"))

Distribution of genetic covariance matrix

ibs$ibs %>% hist(breaks=100, main="Histogram of Identity-By-State proportion\nfrom SNPRelate")

# Another look at relatedness estimate
# test <- snpgdsGRM(genofile, snp.id=snpset.id, num.thread=2, autosome.only=FALSE, method="GCTA")
# test$grm %>% hist(breaks=100, main="Histogram of genetic relationship matrix, method=GCTA\nfrom SNPRelate", prob=TRUE)

Correlation analysis, Genetic PCAs ~ Expression PCAs

Generage PCAs from expression data for integration

PCA with all genes using princomp and showing broken stick

load(file = "../results/deseq2/vsd.pH") #vsd.pH
pca.princomp.expr <- prcomp(cov(assay(vsd.pH)), scale=F) #scale=F for variance-covariance matrix
pca.eigenval(pca.princomp.expr) #The Proporation of Variance = %variance 

## Importance of components:

##                              PC1       PC2       PC3       PC4       PC5
## Variance(eigenvalue)   0.1971877 0.1007330 0.0130358 0.0075512 0.0032650
## Proportion of Variance 0.5823543 0.2974947 0.0384986 0.0223010 0.0096426
## Cumulative Proportion  0.5823543 0.8798489 0.9183475 0.9406485 0.9502911
## Broken-stick value     4.3267428 3.3267428 2.8267428 2.4934095 2.2434095
##                              PC6       PC7       PC8       PC9      PC10
## Variance(eigenvalue)   0.0024846 0.0021867 0.0017134 0.0011845 0.0010702
## Proportion of Variance 0.0073378 0.0064580 0.0050602 0.0034983 0.0031606
## Cumulative Proportion  0.9576289 0.9640869 0.9691471 0.9726454 0.9758060
## Broken-stick value     2.0434095 1.8767428 1.7338857 1.6088857 1.4977746
##                             PC11      PC12      PC13      PC14      PC15
## Variance(eigenvalue)   0.0008187 0.0007814 0.0005743 0.0005095 0.0004795
## Proportion of Variance 0.0024180 0.0023076 0.0016959 0.0015048 0.0014162
## Cumulative Proportion  0.9782240 0.9805316 0.9822275 0.9837323 0.9851484
## Broken-stick value     1.3977746 1.3068655 1.2235321 1.1466091 1.0751805
##                             PC16      PC17      PC18      PC19      PC20
## Variance(eigenvalue)   0.0004489 0.0003915 0.0003294 0.0003143 0.0002753
## Proportion of Variance 0.0013257 0.0011562 0.0009729 0.0009281 0.0008129
## Cumulative Proportion  0.9864741 0.9876303 0.9886032 0.9895314 0.9903443
## Broken-stick value     1.0085138 0.9460138 0.8871903 0.8316347 0.7790031
##                             PC21      PC22      PC23      PC24      PC25
## Variance(eigenvalue)   0.0002604 0.0002533 0.0002314 0.0002205 0.0002126
## Proportion of Variance 0.0007689 0.0007480 0.0006833 0.0006512 0.0006279
## Cumulative Proportion  0.9911132 0.9918612 0.9925445 0.9931957 0.9938236
## Broken-stick value     0.7290031 0.6813841 0.6359296 0.5924513 0.5507846
##                             PC26      PC27      PC28      PC29      PC30
## Variance(eigenvalue)   0.0002043 0.0001962 0.0001621 0.0001531 0.0001517
## Proportion of Variance 0.0006034 0.0005796 0.0004788 0.0004521 0.0004480
## Cumulative Proportion  0.9944270 0.9950066 0.9954855 0.9959375 0.9963855
## Broken-stick value     0.5107846 0.4723231 0.4352861 0.3995718 0.3650890
##                             PC31      PC32      PC33      PC34      PC35
## Variance(eigenvalue)   0.0001333 0.0001325 0.0001264 0.0001249 0.0001170
## Proportion of Variance 0.0003937 0.0003913 0.0003732 0.0003689 0.0003456
## Cumulative Proportion  0.9967792 0.9971704 0.9975436 0.9979125 0.9982581
## Broken-stick value     0.3317557 0.2994976 0.2682476 0.2379446 0.2085328
##                             PC36      PC37      PC38      PC39      PC40
## Variance(eigenvalue)   0.0001130 0.0001113 0.0001001 0.0000944 0.0000905
## Proportion of Variance 0.0003337 0.0003288 0.0002956 0.0002787 0.0002672
## Cumulative Proportion  0.9985918 0.9989206 0.9992162 0.9994948 0.9997621
## Broken-stick value     0.1799614 0.1521836 0.1251566 0.0988408 0.0731998
##                             PC41      PC42
## Variance(eigenvalue)   0.0000806 0.0000000
## Proportion of Variance 0.0002379 0.0000000
## Cumulative Proportion  1.0000000 1.0000000
## Broken-stick value     0.0481998 0.0238095

(pc.percent <- pca.eigenval(pca.princomp.expr)[2,1:4]*100)

## Importance of components:

##      PC1      PC2      PC3      PC4 
## 58.23543 29.74947  3.84986  2.23010

screeplot(pca.princomp.expr, bstick=TRUE) #looks like PC 1-2 are significant, but also pull the 3rd 

tab.expr <- data.frame(sample.id = colnames(assay(vsd.pH)),
    PC1.expr = pca.princomp.expr$x[,1],    # the first eigenvector
    PC2.expr = pca.princomp.expr$x[,2],    # the second eigenvector
    PC3.expr = pca.princomp.expr$x[,3],    # the third eigenvector
    PC4.expr = pca.princomp.expr$x[,4],    # the fourth eigenvector
    stringsAsFactors = FALSE)
shapiro.test(pca.princomp.expr$x) #multivariate normality not met 

## 
##  Shapiro-Wilk normality test
## 
## data:  pca.princomp.expr$x
## W = 0.44877, p-value < 2.2e-16

tab.expr.annot <- left_join(tab.expr, sample.info, by=c("sample.id"="Sample")) %>% droplevels()
group.expr <- as.factor(tab.expr.annot$Treatment)

ggplot(tab.expr.annot, aes(x=PC1.expr, y=PC2.expr)) + 
  geom_point(aes(col=Treatment), size=3.5, alpha=0.85) + 
  theme_minimal() + ggtitle("Expression, all genes, PC1xPC2") + 
  xlab(paste("PC1 (", round(pc.percent[1], digits = 1), "%)", sep="")) + 
  ylab(paste("PC2 (", round(pc.percent[2], digits = 1), "%)", sep="")) + 
  theme(legend.position = "right") + 
  scale_color_manual(values = c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"), name="pH Treatment") +
  guides(colour = guide_legend(override.aes = list(size=3.5))) + 
  stat_ellipse(aes(color=Treatment), size=0.3)

save(tab.expr.annot, file="../results/genotype/tab.expr.annot")

# # GGSCATTER with ellipses and stars 
# ggscatter(tab.expr.annot, x="PC1.expr", y="PC2.expr",
#           color="Treatment", size=3.5, alpha=0.85, 
#            palette = c("#2c7bb6","#fdae61", "#d7191c"),
#    ellipse = TRUE, star.plot = TRUE) + 
#   theme_minimal() + ggtitle("Expression, all genes, PC1xPC2") + 
#   xlab(paste("PC1 (", round(pc.percent[1], digits = 1), "%)", sep="")) + 
#   ylab(paste("PC2 (", round(pc.percent[2], digits = 1), "%)", sep="")) + 
#   theme(legend.position = "right") + 
#   guides(colour = guide_legend(override.aes = list(size=3.5))) 

PCA with gene set that are DEGs among any pH comparison

# load in DEG lists 
load(file = "../results/deseq2/diffex.AM")
load(file = "../results/deseq2/diffex.AL")
load(file = "../results/deseq2/diffex.ML")

pca.princomp.expr.pH <-
  princomp(cov(assay(vsd.pH[unique(c(rownames(diffex.AM),rownames(diffex.AL),rownames(diffex.ML))),])))
pca.eigenval(pca.princomp.expr.pH) #The Proporation of Variance = %variance 

## Importance of components:

##                             [,1]      [,2]      [,3]      [,4]      [,5]
## Variance(eigenvalue)   2.1297512 0.4480297 0.0413377 0.0216129 0.0162686
## Proportion of Variance 0.7925553 0.1667276 0.0153832 0.0080429 0.0060541
## Cumulative Proportion  0.7925553 0.9592829 0.9746661 0.9827090 0.9887631
## Broken-stick value     4.3267428 3.3267428 2.8267428 2.4934095 2.2434095
##                             [,6]      [,7]      [,8]      [,9]     [,10]
## Variance(eigenvalue)   0.0096983 0.0057240 0.0027098 0.0022558 0.0016530
## Proportion of Variance 0.0036091 0.0021301 0.0010084 0.0008395 0.0006151
## Cumulative Proportion  0.9923722 0.9945023 0.9955108 0.9963502 0.9969654
## Broken-stick value     2.0434095 1.8767428 1.7338857 1.6088857 1.4977746
##                            [,11]     [,12]     [,13]     [,14]     [,15]
## Variance(eigenvalue)   0.0010484 0.0010037 0.0007449 0.0007080 0.0005674
## Proportion of Variance 0.0003901 0.0003735 0.0002772 0.0002635 0.0002111
## Cumulative Proportion  0.9973555 0.9977290 0.9980062 0.9982697 0.9984808
## Broken-stick value     1.3977746 1.3068655 1.2235321 1.1466091 1.0751805
##                            [,16]     [,17]     [,18]     [,19]     [,20]
## Variance(eigenvalue)   0.0004085 0.0003656 0.0003441 0.0002999 0.0002710
## Proportion of Variance 0.0001520 0.0001360 0.0001281 0.0001116 0.0001008
## Cumulative Proportion  0.9986328 0.9987689 0.9988969 0.9990085 0.9991093
## Broken-stick value     1.0085138 0.9460138 0.8871903 0.8316347 0.7790031
##                            [,21]     [,22]     [,23]     [,24]     [,25]
## Variance(eigenvalue)   0.0002385 0.0002129 0.0002011 0.0001816 0.0001637
## Proportion of Variance 0.0000888 0.0000792 0.0000748 0.0000676 0.0000609
## Cumulative Proportion  0.9991981 0.9992773 0.9993522 0.9994198 0.9994807
## Broken-stick value     0.7290031 0.6813841 0.6359296 0.5924513 0.5507846
##                            [,26]     [,27]     [,28]     [,29]     [,30]
## Variance(eigenvalue)   0.0001538 0.0001349 0.0001297 0.0001117 0.0001032
## Proportion of Variance 0.0000572 0.0000502 0.0000483 0.0000416 0.0000384
## Cumulative Proportion  0.9995379 0.9995881 0.9996364 0.9996779 0.9997164
## Broken-stick value     0.5107846 0.4723231 0.4352861 0.3995718 0.3650890
##                            [,31]     [,32]     [,33]     [,34]     [,35]
## Variance(eigenvalue)   0.0000964 0.0000924 0.0000866 0.0000798 0.0000707
## Proportion of Variance 0.0000359 0.0000344 0.0000322 0.0000297 0.0000263
## Cumulative Proportion  0.9997522 0.9997866 0.9998189 0.9998486 0.9998749
## Broken-stick value     0.3317557 0.2994976 0.2682476 0.2379446 0.2085328
##                            [,36]     [,37]     [,38]     [,39]     [,40]
## Variance(eigenvalue)   0.0000686 0.0000661 0.0000555 0.0000520 0.0000499
## Proportion of Variance 0.0000255 0.0000246 0.0000206 0.0000193 0.0000186
## Cumulative Proportion  0.9999004 0.9999250 0.9999456 0.9999650 0.9999835
## Broken-stick value     0.1799614 0.1521836 0.1251566 0.0988408 0.0731998
##                            [,41]     [,42]
## Variance(eigenvalue)   0.0000443 0.0000000
## Proportion of Variance 0.0000165 0.0000000
## Cumulative Proportion  1.0000000 1.0000000
## Broken-stick value     0.0481998 0.0238095

(pc.percent.pH <- pca.eigenval(pca.princomp.expr.pH)[2,1:4]*100)

## Importance of components:

## [1] 79.25553 16.67276  1.53832  0.80429

screeplot(pca.princomp.expr.pH, bstick=TRUE) #looks like PC 1 & 2

tab.expr.pH <- data.frame(sample.id = colnames(assay(vsd.pH)),
    PC1.degs = pca.princomp.expr.pH$scores[,1],    # the first eigenvector
    PC2.degs = pca.princomp.expr.pH$scores[,2],    # the second eigenvector
    PC3.degs = pca.princomp.expr.pH$scores[,3],    # the third eigenvector
    PC4.degs = pca.princomp.expr.pH$scores[,4],    # the third eigenvector
    stringsAsFactors = FALSE)
tab.expr.pH.annot <- left_join(tab.expr.pH, sample.info, by=c("sample.id"="Sample")) %>% droplevels()
group.pH.expr <- as.factor(tab.expr.pH.annot$Treatment)

ggplot(tab.expr.pH.annot, aes(x=PC1.degs, y=PC2.degs)) + 
  geom_point(aes(col=Treatment), size=3.5, alpha=0.85) + 
  theme_minimal() + ggtitle("Expression PC1xPC2, DEGs in response to pH") + 
  xlab(paste("PC1 (", round(pc.percent.pH[1], digits = 1), "%)", sep="")) + 
  ylab(paste("PC2 (", round(pc.percent.pH[2], digits = 1), "%)", sep="")) + 
  theme(legend.position = "right") + 
  scale_color_manual(values = c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"), name="pH Treatment") +
  guides(colour = guide_legend(override.aes = list(size=3.5))) + 
  stat_ellipse(aes(color=Treatment), size=0.3)

save(tab.expr.pH.annot, file="../results/genotype/tab.expr.pH.annot")

Merge PC axes from genetic analyis, expression analysis using all data, and expression analysis using DEGs only

PCA.merged <- left_join(left_join(
  tab.annot.gen %>% select(sample.id, Treatment, Tank, starts_with("PC")),
  tab.expr.annot %>% select(starts_with("PC"),sample.id), by=c("sample.id")), 
  tab.expr.pH.annot %>% select(starts_with("PC"),sample.id), by=c("sample.id"))

Examine correlation among genetic and expression PC axes

chart.Correlation(PCA.merged %>% select(starts_with("PC")), histogram=F, pch=19, method = "pearson")
mtext("PC Axes Correlation, Genetic (.gen) ~ Expression (.all & .degs)", side=3, line=1.25)

Correlated PC axes: - PC2.gen x PC4.degs (positive correlation, highly significant) - PC1.gen x PC3 expr (negativel ycorrelated, modestly significant) - PC2.gen x PC3 expr (negativel ycorrelated, modestly significant)

# PCA.merged.4plots <- PCA.merged %>% dplyr::select(PC1.gen, PC2.gen, PC3.expr, PC4.degs) %>% 
#   pivot_longer(cols = c(PC3.expr, PC4.degs), values_to = "score", names_to = "PC.expr") %>% 
#   mutate(PC.expr=as.factor(PC.expr))

# Most significant correlation, PC2.gen x PC4.degs
ggscatter(PCA.merged, x="PC2.gen", y="PC4.degs", add="reg.line", conf.int = TRUE,
          color="white", 
          add.params = list(color = "gray50", fill = "gray70")) + 
    ggtitle("Genetic PC2 ~ Expression (DEGs only) PC4 Axes") + 
  xlab("Genetic PC2") + ylab("DEGs PC4") + 
  stat_cor(method = "pearson", show.legend=FALSE) +
  theme_pubclean() +theme(legend.position = "bottom") + 
  scale_color_manual(values=c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"), name="pH Treatment") +
  guides(colour = guide_legend(override.aes = list(size=3.5))) + 
  geom_point(aes(col=Treatment), alpha=0.85, size=1.8)

## `geom_smooth()` using formula 'y ~ x'

## Warning: Removed 1 rows containing non-finite values (stat_smooth).

## Warning: Removed 1 rows containing non-finite values (stat_cor).

## Warning: Removed 1 rows containing missing values (geom_point).
## Removed 1 rows containing missing values (geom_point).

# Modestly sign. correlation
ggscatter(PCA.merged, x="PC1.gen", y="PC3.expr", add="reg.line", conf.int = TRUE,
          color="white", 
          add.params = list(color = "gray50", fill = "gray70")) + 
    ggtitle("Genetic PC1 ~ Expression (all genes) PC3 Axes") + 
  xlab("Genetic PC1") + ylab("DEGs PC4") + 
  stat_cor(method = "pearson", show.legend=FALSE) +
  theme_pubclean() +theme(legend.position = "bottom") + 
  scale_color_manual(values=c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"), name="pH Treatment") +
  guides(colour = guide_legend(override.aes = list(size=3.5))) + 
  geom_point(aes(col=Treatment), alpha=0.85, size=1.8)

## `geom_smooth()` using formula 'y ~ x'

## Warning: Removed 1 rows containing non-finite values (stat_smooth).

## Warning: Removed 1 rows containing non-finite values (stat_cor).

## Warning: Removed 1 rows containing missing values (geom_point).
## Removed 1 rows containing missing values (geom_point).

# Modestly sign. correlation
ggscatter(PCA.merged, x="PC2.gen", y="PC3.expr", add="reg.line", conf.int = TRUE,
          color="white", 
          add.params = list(color = "gray50", fill = "gray70")) + 
    ggtitle("Genetic PC2 ~ Expression (all genes) PC3 Axes") + 
  xlab("Genetic PC2") + ylab("DEGs PC4") + 
  stat_cor(method = "pearson", show.legend=FALSE) +
  theme_pubclean() +theme(legend.position = "bottom") + 
  scale_color_manual(values=c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"), name="pH Treatment") +
  guides(colour = guide_legend(override.aes = list(size=3.5))) + 
  geom_point(aes(col=Treatment), alpha=0.85, size=1.8)

## `geom_smooth()` using formula 'y ~ x'

## Warning: Removed 1 rows containing non-finite values (stat_smooth).

## Warning: Removed 1 rows containing non-finite values (stat_cor).

## Warning: Removed 1 rows containing missing values (geom_point).
## Removed 1 rows containing missing values (geom_point).

# Run linear models 
# Normal? 
hist(PCA.merged$PC1.gen)

hist(PCA.merged$PC2.gen)

hist(PCA.merged$PC4.degs)

hist(PCA.merged$PC3.expr)

shapiro.test(PCA.merged$PC1.gen)

## 
##  Shapiro-Wilk normality test
## 
## data:  PCA.merged$PC1.gen
## W = 0.88872, p-value = 0.0005791

shapiro.test(PCA.merged$PC2.gen)

## 
##  Shapiro-Wilk normality test
## 
## data:  PCA.merged$PC2.gen
## W = 0.91315, p-value = 0.003214

shapiro.test(PCA.merged$PC4.degs)

## 
##  Shapiro-Wilk normality test
## 
## data:  PCA.merged$PC4.degs
## W = 0.95674, p-value = 0.1128

shapiro.test(PCA.merged$PC3.expr)

## 
##  Shapiro-Wilk normality test
## 
## data:  PCA.merged$PC3.expr
## W = 0.95361, p-value = 0.08705

# Examine linear relationship between Expression PC axes and genetic PC axes, also testing for effect of & interaction with Treatment 
anova(lm(PC4.degs ~ PC2.gen*Treatment, data=PCA.merged)) 

## Analysis of Variance Table
## 
## Response: PC4.degs
##                   Df  Sum Sq  Mean Sq F value    Pr(>F)    
## PC2.gen            1 0.25541 0.255406 14.6206 0.0005026 ***
## Treatment          2 0.01736 0.008681  0.4969 0.6125067    
## PC2.gen:Treatment  2 0.00609 0.003045  0.1743 0.8407241    
## Residuals         36 0.62888 0.017469                      
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1

anova(lm(PC3.expr ~ PC1.gen*Treatment, data=PCA.merged)) 

## Analysis of Variance Table
## 
## Response: PC3.expr
##                   Df  Sum Sq  Mean Sq F value  Pr(>F)  
## PC1.gen            1 0.06804 0.068040  5.9359 0.01991 *
## Treatment          2 0.01594 0.007972  0.6955 0.50540  
## PC1.gen:Treatment  2 0.03783 0.018916  1.6502 0.20620  
## Residuals         36 0.41265 0.011463                  
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1

anova(lm(PC3.expr ~ PC2.gen*Treatment, data=PCA.merged)) 

## Analysis of Variance Table
## 
## Response: PC3.expr
##                   Df  Sum Sq  Mean Sq F value  Pr(>F)  
## PC2.gen            1 0.05354 0.053535   4.323 0.04478 *
## Treatment          2 0.01773 0.008867   0.716 0.49553  
## PC2.gen:Treatment  2 0.01739 0.008694   0.702 0.50224  
## Residuals         36 0.44581 0.012384                  
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1

Correlation between pairwise genetic distances and expression distances

Step 1: generate pairwise genetic distances between samples based on SNPs Step 2: generate pairwise distance matrices from expression data using: - All expressed genes - pH-DEGs Step 3: Calculate Pearson & Spearman correlations between genetic and expression distances

Source of distance matrices:

• For genetic pairwise distances the SPRelate Identiy-By-State analysis produced an nxn matrix of genome-wide average IBS pairwise identities
• For expression pairwise distances DESeq2 is used to calculate Euclidean distance between samples on the rlog-transformed count data.

# Genetic distance matrices 
snp.dists <- ibs$ibs %>% `colnames<-` (ibs$sample.id) %>% `rownames<-` (ibs$sample.id)

# Expression distance matrices, ALL expression data   
sampleDistss <- dist(t(assay(vsd.pH)))

# Expression distance matrix, pH DEGs 
sampleDistss.pH <- dist(t(assay(vsd.pH[rownames(vsd.pH) %in%
  unique(c(rownames(diffex.AM),rownames(diffex.AL),rownames(diffex.ML))),])))

# Create list of samples that are found in both the genetic and expression distance matrices 
dist.sampless <- c(as.matrix(sampleDistss) %>% rownames())[c(as.matrix(sampleDistss) %>% rownames()) %in% rownames(snp.dists)]

# Subset each distance matrix to only include samples found in both 
snp.dists.filt <- dist_subset(d=snp.dists, idx=dist.sampless) # genetic distance matrix, common samples
sampleDistss.filt  <- dist_subset(d=sampleDistss, idx=dist.sampless) # expression distance matrix, common samples
sampleDistss.pH.filt  <- dist_subset(d=sampleDistss.pH, idx=dist.sampless) # DEG distance matrix, common samples

# Check to see if matrices are in same order 
all(snp.dists.filt %>% as.matrix() %>% rownames() == sampleDistss.filt %>% as.matrix() %>% rownames()) # yes! 

## [1] TRUE

# Perform correlation 
plot(x=snp.dists.filt, y=sampleDistss.filt, main="Correlation between pairwise distances\nSNP-based ~ Expr-based")

plot(x=snp.dists.filt, y=sampleDistss.pH.filt, main="Correlation between pairwise distances\nSNP-based ~ DEG-based")

# Perform mantel test 
mantel(snp.dists.filt, sampleDistss.filt, permutations=9999 ) #distance matrices are not sign. correlated 

## 
## Mantel statistic based on Pearson's product-moment correlation 
## 
## Call:
## mantel(xdis = snp.dists.filt, ydis = sampleDistss.filt, permutations = 9999) 
## 
## Mantel statistic r: -0.1408 
##       Significance: 0.9998 
## 
## Upper quantiles of permutations (null model):
##    90%    95%  97.5%    99% 
## 0.0469 0.0590 0.0689 0.0793 
## Permutation: free
## Number of permutations: 9999

mantel(snp.dists.filt, sampleDistss.pH.filt, permutations=9999 ) #distance matrices are not sign. correlated 

## 
## Mantel statistic based on Pearson's product-moment correlation 
## 
## Call:
## mantel(xdis = snp.dists.filt, ydis = sampleDistss.pH.filt, permutations = 9999) 
## 
## Mantel statistic r: -0.08754 
##       Significance: 0.9854 
## 
## Upper quantiles of permutations (null model):
##    90%    95%  97.5%    99% 
## 0.0465 0.0572 0.0675 0.0780 
## Permutation: free
## Number of permutations: 9999

distancess <- cbind(
  melt(as.matrix(sampleDistss.filt), varnames = c("row", "col"), value.name = "expr.all"),
melt(as.matrix(sampleDistss.pH.filt), varnames = c("row", "col"), value.name = "expr.pH")["expr.pH"],
melt(as.matrix(snp.dists.filt), varnames = c("row", "col"), value.name = "snp")["snp"])

# remove 0 distances and join with factors (population, pCO2 treatment)
distancess <- distancess %>% 
  dplyr::filter(snp!=0) %>% 
  left_join((sample.info %>% 
               dplyr::select(Sample, Treatment)), by=c("row"="Sample")) %>%
  mutate(Treatment=as.factor(Treatment))

# Inspect expression distance matrices vs. snp distance matrix for possible correlations? 
chart.Correlation(distancess[3:5] %>% filter(expr.all!=0),histogram=F, pch=19) #snp vs. expr & deg correlation are both weak but significant 

cor.test(distancess$snp, distancess$expr.all, method = "pearson") #cor -0.15

## 
##  Pearson's product-moment correlation
## 
## data:  distancess$snp and distancess$expr.all
## t = -5.8983, df = 1720, p-value = 4.412e-09
## alternative hypothesis: true correlation is not equal to 0
## 95 percent confidence interval:
##  -0.18679912 -0.09419309
## sample estimates:
##        cor 
## -0.1408041

cor.test(distancess$snp, distancess$expr.pH, method = "pearson") #cor -0.08

## 
##  Pearson's product-moment correlation
## 
## data:  distancess$snp and distancess$expr.pH
## t = -3.6446, df = 1720, p-value = 0.0002758
## alternative hypothesis: true correlation is not equal to 0
## 95 percent confidence interval:
##  -0.13422357 -0.04047099
## sample estimates:
##         cor 
## -0.08754112

ggscatter(distancess, x = "snp", y = "expr.all", size=1,
   add = "reg.line",  # Add regressin line
   add.params = list(color = "black", fill = "gray50"), # Customize reg. line
   conf.int = TRUE # Add confidence interval
   ) + stat_cor(method = "pearson", size=5, colour="red") +
  xlab("Genetic Distance") + ylab("Expression Distance") + 
  ggtitle("Sample-sample distances, SNPs ~ All genes") +
  theme(legend.position = "right") + 
  guides(colour = guide_legend(override.aes = list(size=3.5)))

## `geom_smooth()` using formula 'y ~ x'

ggscatter(distancess, x = "snp", y = "expr.pH", size=1,
   add = "reg.line",  # Add regressin line
   add.params = list(color = "black", fill = "gray50"), # Customize reg. line
   conf.int = TRUE # Add confidence interval
   ) + stat_cor(method = "pearson", size=5, colour="red") +
  xlab("Genetic Distance") + ylab("Expression Distance") + 
  ggtitle("Sample-sample distances, SNPs ~ DEGs only") +
  theme(legend.position = "right") + 
  guides(colour = guide_legend(override.aes = list(size=3.5)))

## `geom_smooth()` using formula 'y ~ x'

More analysis via vcfR - compare allelic richness and heterozygosity by pH exposure

First create a vcf of SNPs filtered for loci with max 20% missing rate, and remove loci with <5% minor allele frequency

I did this on Sedna using the slurm script [filter-vcf.sh])(../scripts/filter-vcf.sh), which executed the following code:

vcftools --gzvcf \
"/scratch/lspencer/2022-redking-OA/genotypes/rkc_rnaseq_genotypes-filtered-true.vcf.gz" \
--max-missing 0.80 --maf 0.05 --recode --recode-INFO-all --out \
"/scratch/lspencer/2022-redking-OA/genotypes/rkc_rnaseq_genotypes-final"

This created the file rkc_rnaseq_genotypes-final.recode.vcf

I used this tutorial as an example. - call vcftools - feed it a vcf file after the –vcf flag - Set –max-missing 0.90 to keep only loci with 10% missing genotypes across all individuals - The –recode flag tells the program to write a new vcf file with the filters - The –recode-INFO-all keeps all the INFO flags from the old vcf file in the new one. - Lastly, –out designates the name of the output

# Load the data
vcf <- read.vcfR("../results/genotype/rkc_rnaseq_genotypes-final_miss20.recode.vcf", verbose = FALSE )
# It results in 1,429 SNPs, which does not match SNPRelate's number (1,355). Why? 

# Quantify missing data for each sample 
myMiss <- apply(extract.gt(vcf), MARGIN = 2, function(x){ sum(is.na(x)) })
myMiss <- myMiss/nrow(vcf)
par(mar = c(12,4,4,2))
barplot(myMiss, las = 2, cex.names = .5)
title(ylab = "Sample Missingness (%)")

extract.gt(vcf)

##                           Tank_10_Crab_1 Tank_10_Crab_2 Tank_10_Crab_3
## HiC_scaffold_1_2523394    "1/1"          NA             "0/0"         
## HiC_scaffold_1_2542157    NA             NA             "0/0"         
## HiC_scaffold_1_2647806    "1/1"          NA             NA            
## HiC_scaffold_1_2970226    "0/1"          "0/0"          "0/0"         
## HiC_scaffold_1_3329447    "0|1"          NA             "0/0"         
## HiC_scaffold_1_3795100    "0/0"          NA             "1|1"         
## HiC_scaffold_10_2221345   "1/1"          NA             "0/0"         
## HiC_scaffold_10_2299490   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_10_2565301   "0/0"          NA             "1/1"         
## HiC_scaffold_10_3864355   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_10_4319900   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_10_4319907   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_10_5404579   "0/0"          NA             NA            
## HiC_scaffold_10_5843373   "0/0"          NA             "0/0"         
## HiC_scaffold_100_854947   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_100_1070817  "0/1"          NA             "1/1"         
## HiC_scaffold_100_2002094  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_100_2002097  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_100_2010331  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_100_5186498  "1/1"          NA             "1/1"         
## HiC_scaffold_100_5828477  "1/1"          NA             "0/0"         
## HiC_scaffold_100_6470419  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_100_6739225  "0/1"          "1/1"          "0/1"         
## HiC_scaffold_100_6739258  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_100_6739264  NA             "1|1"          "0/0"         
## HiC_scaffold_100_6907177  "0/0"          NA             "1/1"         
## HiC_scaffold_100_8384481  "1/1"          NA             "1|1"         
## HiC_scaffold_100_8384495  "0/0"          NA             "1|1"         
## HiC_scaffold_100_9451470  "0/0"          NA             "0/1"         
## HiC_scaffold_100_10464574 "0/1"          NA             "0/0"         
## HiC_scaffold_100_11934792 "0|1"          "0/0"          "1|1"         
## HiC_scaffold_100_11980177 "1/1"          NA             "1/1"         
## HiC_scaffold_100_18465760 "0/0"          "0/0"          "1|1"         
## HiC_scaffold_100_18465762 "0/0"          "0/0"          "1|1"         
## HiC_scaffold_100_18466205 NA             "0/0"          "1|1"         
## HiC_scaffold_100_31738115 "0/0"          NA             "1/1"         
## HiC_scaffold_100_44227362 "0/0"          "1/1"          NA            
## HiC_scaffold_101_12808961 NA             NA             "0/0"         
## HiC_scaffold_101_13897149 NA             "1/1"          "1/1"         
## HiC_scaffold_101_18337279 "0/0"          NA             "0/0"         
## HiC_scaffold_101_20800167 "1/1"          NA             "0/0"         
## HiC_scaffold_102_2260041  "0/0"          NA             NA            
## HiC_scaffold_102_8734519  "0/1"          NA             NA            
## HiC_scaffold_102_10233999 "0/0"          "1|1"          "1|1"         
## HiC_scaffold_102_11446042 "1/1"          "0/1"          "0/0"         
## HiC_scaffold_102_15918694 "1/1"          "0/0"          "0/0"         
## HiC_scaffold_102_15935667 "1|1"          NA             "1/1"         
## HiC_scaffold_102_17442643 "0/0"          "1/1"          "1|1"         
## HiC_scaffold_102_17608969 "0/0"          "0/0"          "0/1"         
## HiC_scaffold_102_20180185 "0/0"          "0/0"          "1/1"         
## HiC_scaffold_102_24788723 "1/1"          "0/0"          "0/1"         
## HiC_scaffold_102_25423729 "1|1"          NA             "1|1"         
## HiC_scaffold_102_39755142 "0/0"          "1/1"          "0/1"         
## HiC_scaffold_102_52046978 "0/0"          NA             "0/0"         
## HiC_scaffold_1027_34152   "0|1"          "0/0"          "1/1"         
## HiC_scaffold_103_601715   "1/1"          "1/1"          "0/1"         
## HiC_scaffold_103_2891384  "0/1"          NA             "0/0"         
## HiC_scaffold_103_8191270  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_103_9521272  "1/1"          NA             "1|1"         
## HiC_scaffold_103_14768909 "1|1"          NA             "0|1"         
## HiC_scaffold_103_19312119 "1|1"          NA             "1/1"         
## HiC_scaffold_103_21284866 "0/0"          "0/0"          "0/1"         
## HiC_scaffold_103_31428453 "1|1"          "1|1"          "1|1"         
## HiC_scaffold_103_42567396 "0/0"          NA             "0/1"         
## HiC_scaffold_103_45921571 "0|1"          NA             NA            
## HiC_scaffold_103_45921573 "0|1"          "0/0"          NA            
## HiC_scaffold_103_49592022 "0/0"          "0/1"          "1|1"         
## HiC_scaffold_103_49620132 "0|1"          "0/0"          NA            
## HiC_scaffold_103_50440915 "0/0"          "1|1"          NA            
## HiC_scaffold_103_51944137 "1/1"          "1/1"          "1/1"         
## HiC_scaffold_103_54308582 "1|1"          NA             "0/0"         
## HiC_scaffold_103_54424067 "0/0"          NA             NA            
## HiC_scaffold_103_56932900 "1/1"          "1/1"          "0/1"         
## HiC_scaffold_103_57470264 "1|1"          NA             "1|1"         
## HiC_scaffold_104_7771140  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_104_9103028  "0/0"          NA             "1/1"         
## HiC_scaffold_104_10633168 "0/0"          "0/0"          "0/0"         
## HiC_scaffold_104_18917031 "1/1"          "1/1"          "1/1"         
## HiC_scaffold_104_20851902 "0/0"          NA             "0/0"         
## HiC_scaffold_104_24451803 "0/0"          "0/0"          "0/0"         
## HiC_scaffold_104_28597688 "0/1"          "1/1"          "0|1"         
## HiC_scaffold_104_40927999 "1/1"          "0/0"          "1/1"         
## HiC_scaffold_104_46490074 NA             NA             "0/1"         
## HiC_scaffold_104_49759053 "0/0"          "0/0"          "0/0"         
## HiC_scaffold_104_57267896 NA             NA             "1/1"         
## HiC_scaffold_104_62570010 "0/0"          NA             "1/1"         
## HiC_scaffold_11_32804173  NA             "0/0"          "1/1"         
## HiC_scaffold_11_34516508  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_11_35332996  NA             "1/1"          "1/1"         
## HiC_scaffold_11_35904027  NA             NA             "1/1"         
## HiC_scaffold_11_41539793  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_11_41604080  "1|1"          "1/1"          "1|1"         
## HiC_scaffold_11_42855323  "0/0"          NA             "1/1"         
## HiC_scaffold_11_45339409  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_11_45339410  "0|1"          "0/1"          "0/1"         
## HiC_scaffold_11_47544035  "1/1"          NA             "0/1"         
## HiC_scaffold_12_7515164   "1/1"          "0/1"          "0/0"         
## HiC_scaffold_12_12640100  "0/0"          NA             "0/1"         
## HiC_scaffold_12_12826705  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_12_14899285  "0/0"          "0/0"          NA            
## HiC_scaffold_12_17465672  "0|1"          "0/0"          "0|1"         
## HiC_scaffold_12_22770710  "1|1"          NA             "0/1"         
## HiC_scaffold_12_32318964  NA             "0/0"          "1|1"         
## HiC_scaffold_12_35136373  "1|1"          NA             "0/0"         
## HiC_scaffold_12_40687860  "0/0"          NA             "0/0"         
## HiC_scaffold_13_2938168   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_13_20350974  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_13_27759554  "0/0"          NA             "0/0"         
## HiC_scaffold_13_28146828  NA             "0/0"          NA            
## HiC_scaffold_13_28146830  "0/0"          "0/0"          NA            
## HiC_scaffold_13_28925343  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_13_31913129  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_13_32078924  "0/0"          NA             "0/0"         
## HiC_scaffold_13_33864805  "1/1"          NA             NA            
## HiC_scaffold_13_34892542  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_13_34893103  "0/0"          NA             "0/0"         
## HiC_scaffold_13_35762551  "0|1"          NA             "0/0"         
## HiC_scaffold_13_35881745  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_13_35881749  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_14_3843214   "0/0"          NA             "0/1"         
## HiC_scaffold_14_25884262  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_14_27050415  "1/1"          NA             "1/1"         
## HiC_scaffold_14_27118495  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_14_27277222  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_14_29215814  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_15_2460398   "1|1"          "1/1"          "0|1"         
## HiC_scaffold_15_2462980   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_15_2467289   NA             NA             "1/1"         
## HiC_scaffold_15_5669141   "0/1"          NA             NA            
## HiC_scaffold_15_13700694  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_15_17825275  "0/0"          NA             "0/0"         
## HiC_scaffold_15_19938475  NA             "0/0"          "0/1"         
## HiC_scaffold_15_23865956  "1|1"          NA             "1|1"         
## HiC_scaffold_15_28837774  "0/1"          "0/1"          "0/1"         
## HiC_scaffold_15_28837810  "0/1"          NA             "0/1"         
## HiC_scaffold_15_28837823  "0/1"          NA             "0/0"         
## HiC_scaffold_15_28837835  "0/0"          NA             "0/0"         
## HiC_scaffold_15_28837841  "0/1"          NA             "0|1"         
## HiC_scaffold_15_28837854  "1/1"          NA             "1/1"         
## HiC_scaffold_15_34827832  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_15_34893807  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_15_35327348  NA             NA             "0/1"         
## HiC_scaffold_15_42161112  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_15_42164926  "0/0"          NA             "1|1"         
## HiC_scaffold_15_42164946  "0/0"          NA             "1/1"         
## HiC_scaffold_15_46289572  "1/1"          NA             "1/1"         
## HiC_scaffold_15_50591576  "1|1"          "1|1"          NA            
## HiC_scaffold_15_50759128  "0/0"          NA             "1/1"         
## HiC_scaffold_15_51188336  "1|1"          NA             "1|1"         
## HiC_scaffold_15_54726640  NA             NA             "1/1"         
## HiC_scaffold_15_54788235  "0/1"          NA             "0/0"         
## HiC_scaffold_15_56162375  "0/0"          NA             "0/1"         
## HiC_scaffold_15_61091106  "1/1"          NA             "0/0"         
## HiC_scaffold_15_61464359  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_15_61510386  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_15_62309788  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_15_62309793  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_15_62771254  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_15_63493927  "1/1"          "1/1"          NA            
## HiC_scaffold_15_64997502  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_15_65007865  "1|1"          "0|1"          NA            
## HiC_scaffold_15_65007879  "0|1"          "0|1"          NA            
## HiC_scaffold_15_66038529  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_15_69811281  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_16_14205925  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_16_30404047  "0/0"          "0/0"          NA            
## HiC_scaffold_16_57413288  "1|1"          "1/1"          "0/0"         
## HiC_scaffold_16_63687578  NA             NA             "0/0"         
## HiC_scaffold_16_74138787  "0/1"          NA             "0/0"         
## HiC_scaffold_16_74140106  "0/1"          NA             "0/0"         
## HiC_scaffold_16_76276015  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_17_11390873  NA             "0/0"          "1|1"         
## HiC_scaffold_17_12551128  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_17_16615612  NA             "0/0"          "0/0"         
## HiC_scaffold_17_18838093  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_17_22801072  "0/1"          "0/0"          NA            
## HiC_scaffold_17_23788599  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_17_29383895  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_17_29618771  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_17_29976139  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_17_31107213  "1/1"          NA             "1|1"         
## HiC_scaffold_17_32493792  NA             NA             "0/0"         
## HiC_scaffold_17_33732050  "1|1"          "0/0"          "0/1"         
## HiC_scaffold_17_33801314  "1|1"          "0|1"          "0/1"         
## HiC_scaffold_17_34081889  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_18_227565    "1|1"          "1/1"          NA            
## HiC_scaffold_18_1213486   "1/1"          NA             "0/1"         
## HiC_scaffold_18_1701312   "0/0"          "1/1"          NA            
## HiC_scaffold_18_3506437   "1/1"          NA             "1/1"         
## HiC_scaffold_18_6304978   "1/1"          NA             "1/1"         
## HiC_scaffold_18_6351493   "1/1"          NA             "1/1"         
## HiC_scaffold_18_6358009   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_18_10770701  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_18_13342858  NA             NA             "1/1"         
## HiC_scaffold_18_20045832  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_18_22682683  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_18_26337790  NA             "1|1"          "0/0"         
## HiC_scaffold_18_48929148  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_18_51490626  "0/1"          "0/0"          NA            
## HiC_scaffold_18_53723137  "1|1"          NA             "0/0"         
## HiC_scaffold_18_54496637  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_18_55294388  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_19_279726    "0/0"          "1/1"          NA            
## HiC_scaffold_19_6426572   "0/0"          NA             "1/1"         
## HiC_scaffold_19_6575887   "0/0"          NA             "0/0"         
## HiC_scaffold_19_7755254   "0/0"          "1/1"          "1|1"         
## HiC_scaffold_19_9301421   "0/0"          "0|1"          "0/0"         
## HiC_scaffold_19_9357388   "1|1"          "0/0"          "1|1"         
## HiC_scaffold_19_9778841   "1/1"          NA             "1/1"         
## HiC_scaffold_19_10928976  "1|1"          NA             "0/0"         
## HiC_scaffold_19_10928980  "1|1"          NA             "0/0"         
## HiC_scaffold_19_10928982  "0/0"          NA             "1|1"         
## HiC_scaffold_19_11106347  "0/0"          "0/0"          NA            
## HiC_scaffold_19_11590139  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_19_11665300  "1/1"          NA             "0/1"         
## HiC_scaffold_19_14793640  "0/0"          NA             "1/1"         
## HiC_scaffold_19_22112743  "0/0"          NA             "0/0"         
## HiC_scaffold_19_25473671  "0/0"          NA             "1/1"         
## HiC_scaffold_19_25473692  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_19_28110829  "0/0"          NA             NA            
## HiC_scaffold_19_28465002  "0/1"          "0/0"          "1|1"         
## HiC_scaffold_19_28465167  "0|1"          NA             "0|1"         
## HiC_scaffold_19_30106869  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_19_52538858  NA             "1/1"          "1/1"         
## HiC_scaffold_19_52596196  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_19_53482993  "1/1"          NA             "1/1"         
## HiC_scaffold_19_54312637  "1/1"          "1/1"          "1|1"         
## HiC_scaffold_19_59345841  "1|1"          "1|1"          NA            
## HiC_scaffold_2_3296144    NA             "1|1"          "1|1"         
## HiC_scaffold_2_3418589    NA             NA             "0/0"         
## HiC_scaffold_2_3864060    "0/0"          "0/0"          "1/1"         
## HiC_scaffold_2_4104755    "0/0"          "1|1"          NA            
## HiC_scaffold_2_4104758    "0/0"          "1|1"          NA            
## HiC_scaffold_2_8316721    "0/0"          NA             "1/1"         
## HiC_scaffold_2_9098999    "0/0"          NA             "1/1"         
## HiC_scaffold_2_10457537   "1/1"          NA             "1/1"         
## HiC_scaffold_2_19048125   "1|1"          "1|1"          "1/1"         
## HiC_scaffold_2_21748201   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_2_33187764   "1|1"          NA             "0/0"         
## HiC_scaffold_2_33187770   "1|1"          NA             "0/0"         
## HiC_scaffold_2_33187959   "0/1"          "0/0"          "0/1"         
## HiC_scaffold_2_41603929   "0/1"          "1/1"          "0/0"         
## HiC_scaffold_2_52233191   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_2_52400748   "0/0"          NA             "1/1"         
## HiC_scaffold_2_52403793   "0/0"          NA             "0/0"         
## HiC_scaffold_2_52799130   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_20_10332897  "0/0"          NA             NA            
## HiC_scaffold_20_17198418  "1|1"          NA             "1|1"         
## HiC_scaffold_20_17915398  NA             "1|1"          "0|1"         
## HiC_scaffold_20_18872955  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_20_19055301  "1/1"          NA             "1/1"         
## HiC_scaffold_20_19150094  NA             "1/1"          "1/1"         
## HiC_scaffold_20_20651022  "0/1"          "0/0"          "1|1"         
## HiC_scaffold_20_22651296  NA             "0/0"          "0/0"         
## HiC_scaffold_21_2009156   "0/1"          NA             "0/1"         
## HiC_scaffold_21_2435648   "0/0"          NA             NA            
## HiC_scaffold_21_7164210   "0|1"          NA             "0/0"         
## HiC_scaffold_21_9786512   "1/1"          NA             "0/1"         
## HiC_scaffold_21_12424922  NA             "1/1"          "1/1"         
## HiC_scaffold_21_17966833  "0/0"          NA             "1/1"         
## HiC_scaffold_21_19025429  "1/1"          NA             NA            
## HiC_scaffold_21_20058318  NA             NA             "0|1"         
## HiC_scaffold_21_20562855  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_21_20661860  NA             "0/0"          "0/0"         
## HiC_scaffold_21_20895395  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_21_21158811  "1|1"          "2|2"          NA            
## HiC_scaffold_21_22250857  "1/1"          "1|1"          "0/1"         
## HiC_scaffold_21_22250866  "0/0"          "1|1"          "0|1"         
## HiC_scaffold_21_22257737  "1/1"          NA             "1/1"         
## HiC_scaffold_21_22644667  "1|1"          "1/1"          "1|1"         
## HiC_scaffold_21_22644673  "1|1"          "1/1"          "1|1"         
## HiC_scaffold_21_22666888  "1/1"          NA             "0/1"         
## HiC_scaffold_21_23905416  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_21_23981651  "0/0"          "0/0"          NA            
## HiC_scaffold_21_24287068  NA             "1/1"          "0/0"         
## HiC_scaffold_21_30798434  "1|1"          NA             "1|1"         
## HiC_scaffold_21_35006232  "1/1"          "1/1"          NA            
## HiC_scaffold_21_35779294  "0/0"          NA             "0/0"         
## HiC_scaffold_22_124910    "1/1"          "1/1"          NA            
## HiC_scaffold_22_751023    "1/1"          "1/1"          "1/1"         
## HiC_scaffold_22_1042644   "0|1"          NA             "0|1"         
## HiC_scaffold_22_1044708   "1/1"          NA             "0/0"         
## HiC_scaffold_22_2174911   NA             "0/0"          "0/0"         
## HiC_scaffold_22_3431122   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_22_3446787   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_22_3451756   "0|1"          "0/0"          "1|1"         
## HiC_scaffold_22_3720435   "0/0"          "0/1"          NA            
## HiC_scaffold_22_4065466   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_22_4739889   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_22_4918263   "1|1"          NA             "0|1"         
## HiC_scaffold_22_5750008   "1/1"          NA             "1/1"         
## HiC_scaffold_22_5769942   "0/0"          NA             "0/0"         
## HiC_scaffold_22_28264522  "1|1"          NA             "0/0"         
## HiC_scaffold_22_28265115  "0|1"          "0/0"          "0/1"         
## HiC_scaffold_22_29205851  "0/0"          NA             "1/1"         
## HiC_scaffold_22_29822340  "1/1"          "0/1"          NA            
## HiC_scaffold_22_30797357  "1/1"          NA             "0/0"         
## HiC_scaffold_22_32042610  "1|1"          NA             "1|1"         
## HiC_scaffold_23_11215327  "0/0"          NA             "1/1"         
## HiC_scaffold_23_27081333  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_23_28672255  "0/0"          NA             "0/0"         
## HiC_scaffold_23_29218828  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_23_32528768  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_23_32669383  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_23_33199663  "0/1"          NA             "0/0"         
## HiC_scaffold_23_33245843  "1/1"          "1|1"          NA            
## HiC_scaffold_23_40824545  "1|1"          NA             "1|1"         
## HiC_scaffold_23_41504669  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_24_16622654  NA             "1/1"          "1/1"         
## HiC_scaffold_24_16622681  NA             "1|1"          "1/1"         
## HiC_scaffold_24_19851560  "0|1"          NA             "1/1"         
## HiC_scaffold_24_20590563  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_24_27745754  "0/1"          NA             "0/1"         
## HiC_scaffold_24_28763699  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_24_28763703  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_25_4135969   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_25_4201677   "1/1"          NA             "0/1"         
## HiC_scaffold_25_5872831   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_25_6879627   "0/1"          NA             "0/0"         
## HiC_scaffold_25_8172813   "0/1"          NA             "0/0"         
## HiC_scaffold_25_9969507   "0/1"          NA             "1|1"         
## HiC_scaffold_25_10691336  NA             "0/0"          "0/0"         
## HiC_scaffold_25_21286462  "1/1"          NA             "0/0"         
## HiC_scaffold_26_4086662   "0/0"          NA             NA            
## HiC_scaffold_26_7539671   "1|1"          NA             "1|1"         
## HiC_scaffold_26_8348511   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_26_9043748   "1|1"          NA             "0/0"         
## HiC_scaffold_26_9045655   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_26_11253181  "1/1"          "1|1"          "0/1"         
## HiC_scaffold_26_17828344  "1/1"          NA             "1/1"         
## HiC_scaffold_26_17932520  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_26_17941459  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_26_17960877  NA             "1/1"          "1/1"         
## HiC_scaffold_26_18284041  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_26_18288701  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_26_18294422  "1/1"          "0/1"          "0/1"         
## HiC_scaffold_26_21307365  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_26_22159924  NA             NA             "1/1"         
## HiC_scaffold_26_22161535  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_26_24794176  "0/0"          "1/1"          NA            
## HiC_scaffold_26_28538113  "0|1"          NA             "0|1"         
## HiC_scaffold_26_29031357  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_26_29163462  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_26_42631018  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_26_42634814  "1/1"          NA             "1/1"         
## HiC_scaffold_26_43483190  NA             "0/0"          "1/1"         
## HiC_scaffold_26_49955889  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_26_58342510  NA             "1/1"          "0/0"         
## HiC_scaffold_27_1496120   NA             "1|1"          "1|1"         
## HiC_scaffold_27_1947057   "1|1"          "1|1"          "0/1"         
## HiC_scaffold_27_2359058   "1|1"          "1|1"          "1/1"         
## HiC_scaffold_27_2699645   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_27_4425475   "0|1"          "0/0"          "1|1"         
## HiC_scaffold_27_7539469   "0/1"          "0/0"          "0|1"         
## HiC_scaffold_27_7777122   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_27_16657070  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_27_24539255  "0|1"          "0/0"          "0|1"         
## HiC_scaffold_27_34642359  "0/0"          NA             "1|1"         
## HiC_scaffold_27_34647277  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_27_35380535  "1/1"          NA             "1/1"         
## HiC_scaffold_27_35383230  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_28_21261390  "0/0"          NA             "0/0"         
## HiC_scaffold_28_24490442  "1/1"          NA             "0/0"         
## HiC_scaffold_28_25601927  "0/1"          "0/1"          "0/1"         
## HiC_scaffold_28_31793968  "1/1"          NA             "0/1"         
## HiC_scaffold_28_32126687  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_28_34779518  NA             "1/1"          "1/1"         
## HiC_scaffold_28_36042491  "0/0"          NA             "0/0"         
## HiC_scaffold_28_36692361  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_28_38672993  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_28_39640526  NA             NA             "0/0"         
## HiC_scaffold_28_40169242  "0/0"          NA             "0/0"         
## HiC_scaffold_28_41059640  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_28_42514830  "0|1"          NA             "1/1"         
## HiC_scaffold_28_42601570  "0/0"          NA             NA            
## HiC_scaffold_28_42601585  "1/1"          "0/0"          NA            
## HiC_scaffold_28_43018803  "0/1"          "0/1"          NA            
## HiC_scaffold_28_43036165  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_29_344317    "0/0"          NA             "1/1"         
## HiC_scaffold_29_3811176   "0/0"          NA             "0/1"         
## HiC_scaffold_29_6073993   "1|1"          NA             "0/0"         
## HiC_scaffold_29_6415222   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_29_8224424   "1/1"          "0/0"          "0/1"         
## HiC_scaffold_29_11153624  "1/1"          "1/1"          NA            
## HiC_scaffold_29_11153712  NA             "1/1"          NA            
## HiC_scaffold_29_11167966  "1/1"          "0|1"          "1/1"         
## HiC_scaffold_29_11491468  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_29_12103558  "1/1"          NA             "1|1"         
## HiC_scaffold_29_14279322  NA             "0/0"          "0/1"         
## HiC_scaffold_29_14913907  NA             "1/1"          "1|1"         
## HiC_scaffold_29_16378276  "1/1"          NA             "1/1"         
## HiC_scaffold_29_20635937  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_29_20636787  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_29_22560215  NA             NA             "1/1"         
## HiC_scaffold_29_22561144  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_29_24017849  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_29_31603590  "0/0"          NA             "0/0"         
## HiC_scaffold_3_21670751   NA             "0/0"          "1/1"         
## HiC_scaffold_3_24747014   "0/0"          NA             "0/1"         
## HiC_scaffold_3_27861792   "0/1"          "0/0"          "0/1"         
## HiC_scaffold_3_28057869   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_3_28441436   "0/0"          NA             "1/1"         
## HiC_scaffold_3_28694380   "0/0"          NA             "0/1"         
## HiC_scaffold_3_31361023   "0/1"          "1/1"          "0/1"         
## HiC_scaffold_3_31960572   NA             "0/0"          "1|1"         
## HiC_scaffold_3_32157169   "0/1"          NA             "1/1"         
## HiC_scaffold_3_32159152   "1/1"          NA             "0/0"         
## HiC_scaffold_3_34124237   "0/0"          NA             "0/0"         
## HiC_scaffold_30_14199802  "0/1"          NA             "1/1"         
## HiC_scaffold_30_16052331  NA             "0/1"          "1/1"         
## HiC_scaffold_30_19914075  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_30_20688783  "0/0"          NA             "1/1"         
## HiC_scaffold_30_21446076  "0|1"          NA             "0/0"         
## HiC_scaffold_30_21598563  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_30_22155728  "1|1"          NA             "0|1"         
## HiC_scaffold_31_687411    "1/1"          NA             "1/1"         
## HiC_scaffold_31_3224722   NA             NA             "0/0"         
## HiC_scaffold_31_3574854   "0/0"          "1/1"          "0/1"         
## HiC_scaffold_31_5899551   "1|1"          "1|1"          "1/1"         
## HiC_scaffold_31_5911491   "0/0"          NA             "0/1"         
## HiC_scaffold_31_6297680   "1/1"          NA             NA            
## HiC_scaffold_31_12394016  "0/0"          NA             "1/1"         
## HiC_scaffold_31_12394040  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_31_18612650  "0/0"          NA             NA            
## HiC_scaffold_32_4446859   "1/1"          "1/1"          "0/1"         
## HiC_scaffold_32_5274796   "0/0"          "0/0"          NA            
## HiC_scaffold_32_5275108   "1/1"          NA             "0/0"         
## HiC_scaffold_32_5282358   "0/0"          NA             NA            
## HiC_scaffold_32_5450203   "0/1"          NA             "0/0"         
## HiC_scaffold_32_44200178  "1/1"          NA             "0/0"         
## HiC_scaffold_33_638523    NA             NA             "0/1"         
## HiC_scaffold_33_44489563  "1/1"          NA             "0/1"         
## HiC_scaffold_33_44489988  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_33_47080180  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_33_47495907  "0/0"          NA             "1|1"         
## HiC_scaffold_33_51865876  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_34_1096982   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_34_6091943   "0/0"          "1/1"          "1|1"         
## HiC_scaffold_34_6100160   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_34_24368584  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_35_3233120   "0/0"          NA             "0/1"         
## HiC_scaffold_35_3253574   "0/0"          NA             "0|1"         
## HiC_scaffold_35_5512296   "0/0"          NA             "0/1"         
## HiC_scaffold_35_15114788  "0/1"          "1/1"          NA            
## HiC_scaffold_35_21214090  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_35_21462564  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_35_22746783  "0/1"          NA             NA            
## HiC_scaffold_35_22747085  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_35_23059580  "0/0"          NA             "1/1"         
## HiC_scaffold_35_23158882  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_35_23261143  "1/1"          NA             "1/1"         
## HiC_scaffold_35_24403602  "0/1"          NA             "1/1"         
## HiC_scaffold_35_24403620  "1/1"          NA             "1/1"         
## HiC_scaffold_35_24993986  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_35_24993998  "0/1"          "1|1"          "1/1"         
## HiC_scaffold_36_1538038   "0/1"          NA             "1/1"         
## HiC_scaffold_36_2464728   "0|1"          "1/1"          "1|1"         
## HiC_scaffold_36_5489050   "0/0"          NA             "1/1"         
## HiC_scaffold_36_9673981   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_36_9674127   "1/1"          NA             "1/1"         
## HiC_scaffold_36_9674756   "1/1"          NA             "1/1"         
## HiC_scaffold_36_9676329   "1/1"          "1/1"          NA            
## HiC_scaffold_36_12304516  "0/0"          NA             "0/0"         
## HiC_scaffold_36_12515555  "0|1"          "0/0"          "1|1"         
## HiC_scaffold_36_13092647  "0/1"          NA             "0/0"         
## HiC_scaffold_36_13766994  "0/0"          NA             "1/1"         
## HiC_scaffold_36_14567741  "1/1"          NA             "0/1"         
## HiC_scaffold_36_15530578  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_37_679894    "1/1"          "1/1"          "1/1"         
## HiC_scaffold_37_916693    "0/0"          "0/0"          "1|1"         
## HiC_scaffold_37_928146    "1/1"          "1/1"          NA            
## HiC_scaffold_37_1256768   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_37_1270034   NA             "0/0"          NA            
## HiC_scaffold_37_1770997   NA             "0/0"          "0/0"         
## HiC_scaffold_37_1798298   NA             NA             "0/0"         
## HiC_scaffold_37_2010342   NA             NA             "1|1"         
## HiC_scaffold_37_2141526   "0/0"          "0/1"          "0/0"         
## HiC_scaffold_37_3952190   "1|1"          NA             "0|1"         
## HiC_scaffold_37_3952215   "1|1"          NA             "0|1"         
## HiC_scaffold_37_9915037   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_38_5383430   "0/1"          "1/1"          "0/0"         
## HiC_scaffold_38_5668363   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_38_5879849   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_38_5880155   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_38_10612790  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_38_11940240  "0/1"          "1/1"          "1|1"         
## HiC_scaffold_38_12878826  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_38_12959698  "0/0"          NA             "0/1"         
## HiC_scaffold_38_13087368  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_38_13480648  NA             "0/0"          "0/0"         
## HiC_scaffold_38_13965243  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_38_14089955  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_38_14408072  "0/0"          NA             "0/0"         
## HiC_scaffold_38_14931216  "1|1"          "1/1"          "1/1"         
## HiC_scaffold_38_14978356  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_38_14978367  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_38_15292863  "0/0"          NA             "0/0"         
## HiC_scaffold_38_15306135  NA             NA             "1|1"         
## HiC_scaffold_38_16077506  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_38_16138965  "1/1"          NA             "0/1"         
## HiC_scaffold_38_16226040  "1/1"          NA             "0/0"         
## HiC_scaffold_39_1393769   "0/0"          NA             "0/0"         
## HiC_scaffold_39_2014970   "0/0"          NA             NA            
## HiC_scaffold_39_2014982   "0/0"          NA             NA            
## HiC_scaffold_39_2014985   "0/0"          NA             NA            
## HiC_scaffold_39_2426443   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_39_2485330   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_39_3350506   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_39_5897388   NA             "1|1"          "0/0"         
## HiC_scaffold_39_17631133  "0/0"          NA             "0/1"         
## HiC_scaffold_4_12107187   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_4_18241670   "1|1"          NA             "1|1"         
## HiC_scaffold_4_18241723   "1|1"          NA             "1|1"         
## HiC_scaffold_4_22418566   "0/0"          NA             "0/0"         
## HiC_scaffold_4_27899990   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_4_35575118   NA             "0/0"          "0/0"         
## HiC_scaffold_4_38000967   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_4_50654021   "1|1"          "0/0"          "1|1"         
## HiC_scaffold_40_2243415   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_40_3000572   "0/1"          NA             "0/0"         
## HiC_scaffold_40_3014177   "1|1"          NA             "1|1"         
## HiC_scaffold_40_3027900   "0/1"          "0/0"          "1/1"         
## HiC_scaffold_40_3143834   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_40_3843942   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_40_3847620   "0/0"          NA             "0/1"         
## HiC_scaffold_40_3891007   "1/1"          NA             "0/0"         
## HiC_scaffold_40_3920667   "1|1"          NA             NA            
## HiC_scaffold_40_4177963   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_40_4819107   "1/1"          NA             "0/0"         
## HiC_scaffold_40_4819834   "0/0"          NA             "1|1"         
## HiC_scaffold_40_5788271   "0/0"          NA             "1|1"         
## HiC_scaffold_40_5965269   NA             NA             NA            
## HiC_scaffold_40_6204154   "1/1"          "0/1"          "0/0"         
## HiC_scaffold_40_8387917   "0/1"          "1/1"          "1/1"         
## HiC_scaffold_41_3235384   "0/0"          "0/0"          NA            
## HiC_scaffold_41_3583000   "1/1"          NA             NA            
## HiC_scaffold_41_5334504   "1/1"          NA             "1|1"         
## HiC_scaffold_41_5387631   "0/0"          "0/0"          NA            
## HiC_scaffold_41_6423426   "1/1"          NA             "1/1"         
## HiC_scaffold_41_14359947  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_41_24007593  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_41_26225447  "0/0"          NA             "0/0"         
## HiC_scaffold_41_28626484  NA             NA             "1/1"         
## HiC_scaffold_41_28660620  "0|1"          NA             "0/0"         
## HiC_scaffold_41_31007688  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_42_1131084   "0/0"          NA             "0/0"         
## HiC_scaffold_42_1818523   "0/0"          "1/1"          "0/1"         
## HiC_scaffold_42_2165002   "1/1"          "0/0"          NA            
## HiC_scaffold_42_2711332   "0/1"          NA             "0/1"         
## HiC_scaffold_42_6142699   "0/0"          NA             "1/1"         
## HiC_scaffold_42_6744976   "0/1"          "1/1"          NA            
## HiC_scaffold_42_8066919   "1|1"          "0/0"          "0|1"         
## HiC_scaffold_42_8068292   "0/0"          "0/1"          "0/0"         
## HiC_scaffold_42_12487888  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_42_41366687  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_42_47313337  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_42_47313338  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_42_50784971  "1|1"          "0/0"          "0|1"         
## HiC_scaffold_42_50784977  "1|1"          "0/0"          "0|1"         
## HiC_scaffold_42_50784981  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_42_51916989  NA             NA             "1/1"         
## HiC_scaffold_43_3842003   NA             "1/1"          "1/1"         
## HiC_scaffold_43_14140861  "0/0"          NA             "1|1"         
## HiC_scaffold_43_15053605  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_43_17289945  "1|1"          NA             NA            
## HiC_scaffold_43_29967704  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_43_35745831  NA             "0/0"          "1|1"         
## HiC_scaffold_43_37627949  "1|1"          NA             "1|1"         
## HiC_scaffold_43_37628126  NA             NA             "0/0"         
## HiC_scaffold_43_44017118  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_43_55124138  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_43_60107326  "1|1"          "0|1"          "0|1"         
## HiC_scaffold_43_61359386  "0/0"          NA             "1/1"         
## HiC_scaffold_43_61702593  "0/0"          NA             "0/0"         
## HiC_scaffold_43_61702606  "0/0"          NA             "0/0"         
## HiC_scaffold_43_61702721  "0/0"          NA             "0/0"         
## HiC_scaffold_43_61702738  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_43_62511703  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_43_64069457  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_43_64577269  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_44_1920144   "0/0"          NA             NA            
## HiC_scaffold_44_2148035   NA             NA             "0/0"         
## HiC_scaffold_44_2568167   "0/1"          NA             "1/1"         
## HiC_scaffold_45_4180070   "1/1"          "1/1"          "0/1"         
## HiC_scaffold_45_4797754   "1/2"          "0/0"          "2/2"         
## HiC_scaffold_45_5911123   "1|1"          "1|1"          "0/1"         
## HiC_scaffold_45_6958990   NA             NA             "0/0"         
## HiC_scaffold_45_8516216   "1/1"          NA             "1/1"         
## HiC_scaffold_45_10191213  NA             "1/1"          "0/0"         
## HiC_scaffold_45_12005885  "1/1"          NA             "0/0"         
## HiC_scaffold_45_12006766  NA             "0/0"          "1/1"         
## HiC_scaffold_45_24736172  NA             "0/0"          "0/1"         
## HiC_scaffold_45_24739830  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_46_9691567   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_46_17380257  "1/1"          NA             "0/0"         
## HiC_scaffold_46_18387147  "0/0"          "1|1"          "0|1"         
## HiC_scaffold_46_37092355  NA             NA             "0/0"         
## HiC_scaffold_46_39183624  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_46_39390547  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_46_42964941  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_46_42986653  "0/0"          NA             "0/1"         
## HiC_scaffold_46_52074364  "0/1"          "1|1"          "1|1"         
## HiC_scaffold_46_54255667  "1|1"          "1/1"          "1/1"         
## HiC_scaffold_47_3750532   "1/1"          "1/1"          NA            
## HiC_scaffold_47_3751345   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_47_15400639  "1|1"          NA             "1|1"         
## HiC_scaffold_47_24072414  "0/1"          "0/0"          NA            
## HiC_scaffold_47_25273825  "0/1"          NA             "0/0"         
## HiC_scaffold_48_8752752   "0/1"          "0|2"          "0/0"         
## HiC_scaffold_48_10765920  NA             NA             "0/0"         
## HiC_scaffold_48_16077918  "0|1"          NA             "0/0"         
## HiC_scaffold_48_16077940  "0|1"          NA             "0/1"         
## HiC_scaffold_48_16411609  NA             NA             NA            
## HiC_scaffold_48_19972580  "0/1"          "1/1"          NA            
## HiC_scaffold_48_23493079  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_48_23597210  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_48_24478493  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_48_24881148  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_48_25865723  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_48_25984068  "0/0"          "1|1"          "0/1"         
## HiC_scaffold_48_25989079  "0|1"          NA             "0/0"         
## HiC_scaffold_48_30601375  NA             "1|1"          "0|1"         
## HiC_scaffold_48_31662115  NA             NA             "1/1"         
## HiC_scaffold_48_41971562  NA             NA             "0/1"         
## HiC_scaffold_49_3392801   "0/1"          "1/1"          "0/0"         
## HiC_scaffold_49_6101692   "1/1"          NA             "1/1"         
## HiC_scaffold_49_7996315   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_49_9470474   NA             "0/0"          "1/1"         
## HiC_scaffold_49_9886007   "0/0"          "1/1"          "1/1"         
## HiC_scaffold_49_12592113  "0/0"          NA             NA            
## HiC_scaffold_49_12741575  "0/0"          NA             "0/1"         
## HiC_scaffold_49_15135019  NA             "1|1"          "1/1"         
## HiC_scaffold_49_25906219  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_49_26614199  NA             NA             NA            
## HiC_scaffold_49_26655554  "0|1"          "0/0"          NA            
## HiC_scaffold_49_37568341  "1/1"          NA             NA            
## HiC_scaffold_49_37568353  "1/1"          NA             NA            
## HiC_scaffold_49_40002255  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_49_40003229  "0/0"          NA             "0/0"         
## HiC_scaffold_49_42966376  "0/0"          NA             "1/1"         
## HiC_scaffold_5_801252     "0/0"          NA             "1/1"         
## HiC_scaffold_5_1446603    NA             NA             NA            
## HiC_scaffold_5_1446611    NA             NA             NA            
## HiC_scaffold_5_1530759    "0/1"          NA             "1/1"         
## HiC_scaffold_5_1539275    "0/0"          "0/0"          "0/0"         
## HiC_scaffold_5_1789576    "0/0"          NA             "1|1"         
## HiC_scaffold_5_1808197    "1/1"          NA             "1/1"         
## HiC_scaffold_5_1808204    "0/0"          NA             "0/0"         
## HiC_scaffold_5_1943895    "1|1"          "1|1"          "0/1"         
## HiC_scaffold_5_1944469    "1/1"          "0/1"          "1/1"         
## HiC_scaffold_5_2857283    "0/0"          NA             "1/1"         
## HiC_scaffold_5_4061378    NA             "1/1"          NA            
## HiC_scaffold_5_4340647    "0/0"          NA             "0/0"         
## HiC_scaffold_5_4435246    "1/1"          "0/0"          "1/1"         
## HiC_scaffold_5_8868783    "0/1"          NA             "1/1"         
## HiC_scaffold_50_4315969   "0/0"          NA             "0/1"         
## HiC_scaffold_50_11652296  NA             "1|1"          "1/1"         
## HiC_scaffold_50_11657309  "1/1"          NA             "1/1"         
## HiC_scaffold_50_15521027  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_50_21050962  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_50_23686202  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_50_27393462  "0|1"          "0/0"          "0|1"         
## HiC_scaffold_50_42586883  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_50_45087211  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_50_49796550  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_50_54383367  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_50_63318678  "0/1"          NA             "1/1"         
## HiC_scaffold_51_3521000   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_51_4681905   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_51_6305599   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_51_8530818   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_51_11653312  NA             NA             "1/1"         
## HiC_scaffold_51_13138547  "1/1"          NA             "1/1"         
## HiC_scaffold_51_14457091  "1|1"          "1|1"          "0|1"         
## HiC_scaffold_51_15512668  "0/1"          "1/1"          "0/1"         
## HiC_scaffold_51_17816346  "1/1"          NA             "1/1"         
## HiC_scaffold_51_19997934  "1|1"          NA             "1|1"         
## HiC_scaffold_51_19997936  "1|1"          NA             "1|1"         
## HiC_scaffold_51_20870773  "1/1"          NA             "0/0"         
## HiC_scaffold_51_26660104  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_51_40727521  "0|1"          "1|1"          "1|1"         
## HiC_scaffold_51_40892841  NA             "0/0"          "0/1"         
## HiC_scaffold_51_41717519  NA             "0/0"          "1/1"         
## HiC_scaffold_51_42547638  "0/1"          "1/1"          NA            
## HiC_scaffold_52_3335804   "1/1"          NA             "0/0"         
## HiC_scaffold_52_4149130   "0/0"          NA             "0|1"         
## HiC_scaffold_52_6893679   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_52_13155416  "1|1"          "1/1"          "1/1"         
## HiC_scaffold_52_13155437  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_52_13155442  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_52_14885688  "1/1"          NA             "0/0"         
## HiC_scaffold_52_14895078  NA             "1/1"          "1/1"         
## HiC_scaffold_52_15141791  "1/1"          NA             "0/0"         
## HiC_scaffold_52_15743051  NA             "0/0"          "1|1"         
## HiC_scaffold_52_15760201  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_52_15834589  "1/1"          NA             "0/1"         
## HiC_scaffold_52_15841769  "1/1"          NA             "0/0"         
## HiC_scaffold_52_15862421  "0/1"          "0/0"          "1|1"         
## HiC_scaffold_52_15970970  "0/1"          NA             "1/2"         
## HiC_scaffold_52_16275237  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_52_16275240  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_52_16275290  NA             "0/0"          "0/0"         
## HiC_scaffold_52_16524164  "0/0"          "1|1"          "0/1"         
## HiC_scaffold_52_16524572  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_52_16525647  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_52_16637047  NA             NA             "1/1"         
## HiC_scaffold_52_17202127  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_52_17207724  "1/1"          NA             "0/0"         
## HiC_scaffold_52_17508820  NA             "0/0"          "1|1"         
## HiC_scaffold_52_17547593  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_52_17551239  NA             "0/1"          "1/1"         
## HiC_scaffold_52_17560696  "0|1"          NA             "0/0"         
## HiC_scaffold_52_17560699  "0|1"          NA             "0/0"         
## HiC_scaffold_52_17741250  "0/0"          NA             "0/1"         
## HiC_scaffold_52_17742260  "1/1"          NA             "0/0"         
## HiC_scaffold_52_18340578  "0/0"          NA             "1/1"         
## HiC_scaffold_52_18415911  "1/1"          NA             "0/1"         
## HiC_scaffold_52_22189517  "1/1"          NA             "0/1"         
## HiC_scaffold_52_22526592  "0/1"          "0/0"          NA            
## HiC_scaffold_52_26393471  "0/1"          NA             "1/1"         
## HiC_scaffold_52_26799380  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_52_31871931  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_52_31874283  "1/1"          NA             NA            
## HiC_scaffold_52_31874287  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_52_32161053  "0|1"          "1|1"          "1|1"         
## HiC_scaffold_52_33165557  "0/0"          NA             "1/1"         
## HiC_scaffold_52_33897620  NA             NA             "0/0"         
## HiC_scaffold_52_34763156  "0/0"          NA             "0/1"         
## HiC_scaffold_52_34763171  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_52_35174755  "1|1"          NA             "0/0"         
## HiC_scaffold_52_35608453  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_52_35608470  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_52_39464728  "0/0"          NA             "0/0"         
## HiC_scaffold_52_42141354  NA             "1|1"          "0/0"         
## HiC_scaffold_52_44675725  "1/1"          NA             "1/1"         
## HiC_scaffold_52_49935920  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_53_21789524  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_53_25168042  NA             "0/0"          "0/0"         
## HiC_scaffold_53_26398989  NA             NA             "0/0"         
## HiC_scaffold_53_26398992  NA             NA             "0/0"         
## HiC_scaffold_53_26398994  NA             NA             "0/0"         
## HiC_scaffold_53_26549665  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_53_29227676  "0|1"          NA             "0|1"         
## HiC_scaffold_53_31250349  "1|1"          "1/1"          "0/1"         
## HiC_scaffold_54_530581    "1|1"          "1|1"          "0/1"         
## HiC_scaffold_54_794095    "0/1"          NA             "1|1"         
## HiC_scaffold_54_1171109   "0/0"          NA             "1|1"         
## HiC_scaffold_54_1378956   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_54_1380539   "1/1"          NA             "1/1"         
## HiC_scaffold_54_3045015   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_54_3185987   "1/1"          NA             "0/0"         
## HiC_scaffold_54_4401098   "0/0"          NA             "1|1"         
## HiC_scaffold_54_5595903   NA             "0/0"          NA            
## HiC_scaffold_54_5595921   NA             NA             NA            
## HiC_scaffold_54_5595928   "0/0"          NA             NA            
## HiC_scaffold_54_5595949   NA             "0/0"          NA            
## HiC_scaffold_54_6649662   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_54_8036734   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_54_9206614   "1/1"          NA             "1/1"         
## HiC_scaffold_54_35913192  "0/1"          NA             "1|1"         
## HiC_scaffold_54_35913282  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_54_35913283  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_55_1260491   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_55_3254027   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_55_3281985   "0/0"          NA             NA            
## HiC_scaffold_55_5409544   "0/1"          NA             "0/0"         
## HiC_scaffold_55_5411094   "1|1"          NA             "1|1"         
## HiC_scaffold_55_5411115   "1/1"          NA             "1|1"         
## HiC_scaffold_55_18121799  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_55_19605809  "1|1"          NA             NA            
## HiC_scaffold_55_19605817  "1|1"          NA             "0/1"         
## HiC_scaffold_55_19605821  "1|1"          NA             "1/1"         
## HiC_scaffold_55_20195204  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_55_20886967  "1/1"          NA             "0/0"         
## HiC_scaffold_55_23222937  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_55_23626331  NA             NA             "0/0"         
## HiC_scaffold_55_24539590  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_55_24585939  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_55_34174151  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_56_17874332  NA             "0/0"          "0/0"         
## HiC_scaffold_56_18635259  "1|1"          NA             "0/0"         
## HiC_scaffold_56_23654344  NA             "1/1"          "0/0"         
## HiC_scaffold_56_35850533  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_56_35850539  "0/1"          "0/0"          "1|1"         
## HiC_scaffold_56_40813556  NA             NA             "1/1"         
## HiC_scaffold_56_53211633  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_56_60070829  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_56_73286017  "1|1"          "1|1"          "0/1"         
## HiC_scaffold_56_73829442  "0|1"          NA             "0/2"         
## HiC_scaffold_56_73829443  "0|1"          NA             "0/2"         
## HiC_scaffold_56_76060304  NA             NA             NA            
## HiC_scaffold_57_25306408  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_57_29222385  NA             "0/0"          "0/0"         
## HiC_scaffold_57_29592432  "1/1"          NA             "0/0"         
## HiC_scaffold_57_31472698  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_57_32371742  "0/0"          NA             "0/0"         
## HiC_scaffold_57_36495072  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_57_37286264  NA             "1/1"          "1/1"         
## HiC_scaffold_57_38537415  "1|1"          NA             "0/0"         
## HiC_scaffold_57_45438854  "0/0"          NA             "0/0"         
## HiC_scaffold_57_52856874  NA             "0/0"          "0/1"         
## HiC_scaffold_57_53575355  "0/1"          NA             "1/1"         
## HiC_scaffold_57_55856783  "1/1"          NA             "1/1"         
## HiC_scaffold_58_1362614   "0/1"          "1/1"          "1/1"         
## HiC_scaffold_58_1432845   "1/1"          "1/1"          "0/1"         
## HiC_scaffold_58_1541720   "0/0"          NA             "0/1"         
## HiC_scaffold_58_2777120   "1/1"          NA             "0/1"         
## HiC_scaffold_58_2973169   "1/1"          "1|1"          "1/1"         
## HiC_scaffold_58_3243043   "0/0"          NA             "0/1"         
## HiC_scaffold_58_4035282   "0/0"          NA             NA            
## HiC_scaffold_58_5442157   NA             NA             "0/1"         
## HiC_scaffold_58_8004631   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_58_8058998   NA             "1|1"          NA            
## HiC_scaffold_58_8932837   "1/1"          "1|1"          "0/0"         
## HiC_scaffold_58_14814944  NA             "0/0"          "0/1"         
## HiC_scaffold_58_15639988  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_58_15707198  "0/1"          NA             "1/1"         
## HiC_scaffold_58_15707258  "1/1"          NA             "1/1"         
## HiC_scaffold_58_15710623  "0/0"          NA             NA            
## HiC_scaffold_58_19155063  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_58_20224050  "0/0"          NA             "1/1"         
## HiC_scaffold_58_38475355  "1/1"          NA             "1/1"         
## HiC_scaffold_59_3979055   NA             NA             "1/1"         
## HiC_scaffold_59_5071810   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_59_5349936   "0/0"          NA             "1/1"         
## HiC_scaffold_59_5350114   NA             "0/0"          "0/0"         
## HiC_scaffold_59_7738302   "1/1"          NA             "0/0"         
## HiC_scaffold_59_7738351   NA             "0/0"          "0/0"         
## HiC_scaffold_59_7958561   "1|1"          NA             "1|1"         
## HiC_scaffold_59_9273798   NA             "0/0"          "0/0"         
## HiC_scaffold_59_50928099  "0/1"          NA             "0/1"         
## HiC_scaffold_59_52960060  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_6_10569023   "1/1"          NA             "0/0"         
## HiC_scaffold_6_10711445   "1/1"          NA             NA            
## HiC_scaffold_6_13209200   "0/0"          NA             "0/1"         
## HiC_scaffold_6_13213107   "0/0"          NA             "0/1"         
## HiC_scaffold_6_13311684   "1|1"          NA             NA            
## HiC_scaffold_6_15670783   "1|1"          NA             NA            
## HiC_scaffold_6_19111232   "0/0"          NA             NA            
## HiC_scaffold_6_32805498   NA             "0/0"          NA            
## HiC_scaffold_6_38793174   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_6_41092101   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_6_41342933   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_6_47594508   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_60_70878     "1|1"          "1|1"          "1|1"         
## HiC_scaffold_60_99549     "0/0"          "0/0"          "1|1"         
## HiC_scaffold_60_201823    "0/0"          "0/0"          "1/1"         
## HiC_scaffold_60_712969    "1/1"          "0/0"          "1|1"         
## HiC_scaffold_60_744783    "1|1"          NA             "0/1"         
## HiC_scaffold_60_744788    "0/0"          "0/0"          "0/1"         
## HiC_scaffold_60_22142128  "0/0"          NA             "0/0"         
## HiC_scaffold_60_27599770  "1/1"          "1/1"          NA            
## HiC_scaffold_60_30608878  "1/1"          NA             "1|1"         
## HiC_scaffold_60_32657324  "0/0"          "1|1"          "1/1"         
## HiC_scaffold_60_32672580  "1/1"          NA             "1/1"         
## HiC_scaffold_60_38856893  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_60_39028335  "1/1"          NA             "1/1"         
## HiC_scaffold_60_40296869  "1/1"          NA             "0/1"         
## HiC_scaffold_60_42775723  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_60_44687906  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_60_44804601  NA             "0/0"          NA            
## HiC_scaffold_60_53696867  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_60_53696868  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_60_60651515  NA             "1/1"          "0|1"         
## HiC_scaffold_60_70678462  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_61_2205328   "0|1"          "0/0"          "0|1"         
## HiC_scaffold_61_2491706   "0/1"          NA             "1/1"         
## HiC_scaffold_61_4009916   "0/0"          NA             "1|1"         
## HiC_scaffold_61_4062917   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_61_4122763   NA             NA             NA            
## HiC_scaffold_61_4216461   "0/0"          NA             "0/1"         
## HiC_scaffold_61_4325053   "1/1"          "0/1"          "0/0"         
## HiC_scaffold_61_9004838   "1|1"          "0/0"          "0/1"         
## HiC_scaffold_61_14635083  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_62_1128608   "1/1"          NA             "1/1"         
## HiC_scaffold_62_11335200  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_62_18828476  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_62_21548870  "1|1"          NA             "1|1"         
## HiC_scaffold_62_23103274  "0/0"          NA             "0/0"         
## HiC_scaffold_62_25793456  "1/1"          NA             "0/0"         
## HiC_scaffold_62_25887474  NA             NA             "0/1"         
## HiC_scaffold_62_28516096  "0|1"          NA             "0|1"         
## HiC_scaffold_62_28516099  "0|1"          NA             "0|1"         
## HiC_scaffold_62_28818725  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_62_28818729  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_62_45207353  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_63_3092269   "1/1"          NA             "0/1"         
## HiC_scaffold_63_3977940   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_63_4084937   "1/1"          "0/0"          "0/1"         
## HiC_scaffold_63_4196326   NA             NA             "0/1"         
## HiC_scaffold_63_6262453   NA             NA             "1/1"         
## HiC_scaffold_63_6350204   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_63_6458794   "1/1"          NA             "0|1"         
## HiC_scaffold_64_9162978   "0/0"          NA             NA            
## HiC_scaffold_64_16876561  "0/0"          "0|1"          NA            
## HiC_scaffold_64_17543009  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_64_18925356  "0/0"          NA             "0/1"         
## HiC_scaffold_64_19133050  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_64_19627769  "1|1"          NA             "0|1"         
## HiC_scaffold_64_20477250  "0/0"          NA             "0/0"         
## HiC_scaffold_64_22816677  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_64_22954654  "0|1"          "1|1"          "0/0"         
## HiC_scaffold_64_22954658  "0|1"          "1|1"          "0/0"         
## HiC_scaffold_64_22954682  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_65_6829971   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_65_8071102   "0/0"          NA             "0/0"         
## HiC_scaffold_65_9023979   "0/0"          NA             "0/0"         
## HiC_scaffold_65_9839671   "1|1"          "1/1"          "1/1"         
## HiC_scaffold_65_10404778  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_65_11327791  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_65_11332104  "0/0"          NA             "0/0"         
## HiC_scaffold_65_34823822  "0/1"          "0/0"          NA            
## HiC_scaffold_65_51418017  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_65_54053979  "1|1"          "1|1"          NA            
## HiC_scaffold_65_57110875  "0/0"          NA             "1|1"         
## HiC_scaffold_66_15615363  "1|1"          "1/1"          "1|1"         
## HiC_scaffold_66_15672090  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_66_17903445  "0/0"          NA             "1|1"         
## HiC_scaffold_66_18298629  "1|1"          "1|1"          "0|1"         
## HiC_scaffold_66_19730676  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_66_23688768  "0/1"          "1/1"          NA            
## HiC_scaffold_66_26614535  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_66_27445665  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_66_29457165  NA             "1/1"          "0/1"         
## HiC_scaffold_66_29457180  NA             "0/0"          "0/1"         
## HiC_scaffold_66_30116287  "1/1"          NA             "2|2"         
## HiC_scaffold_66_31603503  "0/0"          NA             "1|1"         
## HiC_scaffold_66_33261460  "0/1"          NA             "0/0"         
## HiC_scaffold_66_34138981  "0/1"          NA             "0/0"         
## HiC_scaffold_66_34139020  "0/0"          NA             "1|1"         
## HiC_scaffold_66_34142862  NA             "0/1"          NA            
## HiC_scaffold_67_1404390   NA             "1/1"          "1/1"         
## HiC_scaffold_67_28493665  "1/1"          "1|1"          "0/0"         
## HiC_scaffold_67_30243885  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_67_31511806  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_67_34638092  "0/0"          NA             "0/0"         
## HiC_scaffold_67_37534720  "1/1"          NA             "0|1"         
## HiC_scaffold_67_39679546  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_67_39854918  "0|1"          "0/0"          NA            
## HiC_scaffold_67_39860738  NA             "0/1"          "1/1"         
## HiC_scaffold_67_40331656  "0/0"          NA             "0/1"         
## HiC_scaffold_67_40824747  "1|1"          NA             NA            
## HiC_scaffold_68_3438132   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_68_3438133   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_68_11206902  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_68_32770607  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_68_34016823  "0/0"          NA             NA            
## HiC_scaffold_68_34020019  "1/1"          "0/0"          NA            
## HiC_scaffold_68_40296057  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_68_40296059  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_68_65001879  "1/1"          NA             "0/0"         
## HiC_scaffold_69_23311147  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_69_27351303  "0/0"          NA             "1/1"         
## HiC_scaffold_69_29437208  "1/1"          "1|1"          "0/0"         
## HiC_scaffold_69_33699381  NA             NA             "1|1"         
## HiC_scaffold_69_40194698  "1/1"          NA             "0/0"         
## HiC_scaffold_69_48273575  NA             "0/0"          "0/0"         
## HiC_scaffold_69_48348026  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_69_48348034  "0/0"          "1|1"          "0/1"         
## HiC_scaffold_69_49563252  "0/0"          NA             "1/1"         
## HiC_scaffold_69_49593952  NA             "1/1"          "0/1"         
## HiC_scaffold_69_49859037  "0/0"          "0/0"          NA            
## HiC_scaffold_69_51271238  "0/0"          NA             "1/1"         
## HiC_scaffold_69_51529836  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_69_57313650  "0/0"          NA             "1/1"         
## HiC_scaffold_69_57359194  NA             "0/0"          "0/0"         
## HiC_scaffold_6951_523650  "0/0"          NA             "0/1"         
## HiC_scaffold_6951_897126  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_6951_1134482 "0/0"          "0/0"          "0/1"         
## HiC_scaffold_6951_2484960 NA             "0/1"          "1/1"         
## HiC_scaffold_6951_3301273 NA             NA             "1|1"         
## HiC_scaffold_6951_3314609 "0/0"          "1/1"          "1/1"         
## HiC_scaffold_6951_3945993 "0|1"          NA             NA            
## HiC_scaffold_6958_218293  "0/0"          NA             "0|1"         
## HiC_scaffold_6958_449143  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_7_351023     "1/1"          "1/1"          "0/0"         
## HiC_scaffold_7_488024     NA             "1|1"          "0|1"         
## HiC_scaffold_7_492663     "1/1"          NA             "1/1"         
## HiC_scaffold_7_693567     NA             NA             "0/0"         
## HiC_scaffold_7_2379128    "0/0"          NA             "1/1"         
## HiC_scaffold_7_3087721    "1/1"          NA             "0/1"         
## HiC_scaffold_7_3394880    "0/1"          NA             "1/1"         
## HiC_scaffold_7_22247106   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_70_4632611   "0|1"          "1|1"          "1|1"         
## HiC_scaffold_70_14042778  NA             "1/1"          NA            
## HiC_scaffold_71_410844    "0/0"          NA             "0/0"         
## HiC_scaffold_71_1753451   "1/1"          NA             "1/1"         
## HiC_scaffold_71_2283682   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_71_3439685   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_71_17850462  "0/0"          NA             "0/0"         
## HiC_scaffold_71_20588314  "0/1"          NA             "0/0"         
## HiC_scaffold_71_25465351  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_71_25465352  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_71_26356062  "0/1"          "1/1"          "0/1"         
## HiC_scaffold_72_11785096  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_72_17285854  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_72_23704999  "0|1"          NA             "1/1"         
## HiC_scaffold_72_24465318  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_72_30457277  "0/1"          NA             "0/1"         
## HiC_scaffold_72_32068649  NA             NA             "1/1"         
## HiC_scaffold_72_35058295  "0/0"          NA             "0/1"         
## HiC_scaffold_72_36024997  "0/1"          NA             "1|1"         
## HiC_scaffold_72_37135067  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_72_38410141  NA             "0|1"          "1/1"         
## HiC_scaffold_72_38448056  "0|1"          NA             "0/0"         
## HiC_scaffold_72_41412511  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_73_2192629   "0/0"          NA             "1|1"         
## HiC_scaffold_73_2920208   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_73_4522493   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_73_4748625   "0/0"          NA             "1/1"         
## HiC_scaffold_73_5839336   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_73_9338582   NA             NA             "1/1"         
## HiC_scaffold_73_27393859  "0/0"          NA             "0|1"         
## HiC_scaffold_74_14235619  "0/0"          NA             "0/0"         
## HiC_scaffold_74_14515598  "1/1"          NA             "0/1"         
## HiC_scaffold_74_15116121  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_74_17233613  NA             "0/1"          "1/1"         
## HiC_scaffold_74_17725340  "1|1"          NA             "1|1"         
## HiC_scaffold_74_18418135  "1|1"          "0/0"          NA            
## HiC_scaffold_74_18418138  "1|1"          "0/0"          NA            
## HiC_scaffold_74_21254425  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_74_22261065  "0/0"          NA             "1/1"         
## HiC_scaffold_74_47132519  "0/0"          NA             "0/0"         
## HiC_scaffold_74_50979096  NA             "0/0"          "0/0"         
## HiC_scaffold_74_51060549  "0/0"          NA             "1/1"         
## HiC_scaffold_74_53256803  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_74_55464169  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_74_55515512  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_74_55999260  "0/0"          "0/0"          NA            
## HiC_scaffold_74_57404902  "1|1"          NA             "1|1"         
## HiC_scaffold_74_58181927  "0|1"          NA             "1|1"         
## HiC_scaffold_74_58198600  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_74_63060195  NA             "1/1"          "1/1"         
## HiC_scaffold_75_5345466   NA             "1|1"          "0/0"         
## HiC_scaffold_75_5346522   "0/0"          "1/1"          "1/1"         
## HiC_scaffold_75_5346535   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_75_9850973   "1|1"          "1/1"          "0/1"         
## HiC_scaffold_76_27149820  NA             "0/0"          "1/1"         
## HiC_scaffold_76_31582908  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_76_31792815  "0/1"          NA             "0/0"         
## HiC_scaffold_76_35352820  "0/0"          NA             "0/0"         
## HiC_scaffold_76_57782171  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_76_59862401  NA             "0/0"          "0/0"         
## HiC_scaffold_76_61095594  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_76_65496128  "0/1"          NA             "0/0"         
## HiC_scaffold_76_68965847  "1/1"          NA             "0/1"         
## HiC_scaffold_76_68966411  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_76_69823482  NA             NA             "0/0"         
## HiC_scaffold_76_73343841  "1/1"          NA             "1/1"         
## HiC_scaffold_77_3598274   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_77_6982137   "0/1"          NA             "0/0"         
## HiC_scaffold_77_11021994  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_77_13608165  "0/1"          NA             "0/1"         
## HiC_scaffold_77_16888594  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_77_16888623  "0/0"          NA             NA            
## HiC_scaffold_77_16889448  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_77_39784685  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_77_44375866  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_77_45385370  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_78_5719919   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_78_11353297  "1|1"          NA             "1/1"         
## HiC_scaffold_78_27316392  "0/0"          NA             "0/0"         
## HiC_scaffold_78_48124809  "0/0"          NA             "0/0"         
## HiC_scaffold_78_48124826  NA             "1/1"          "0/1"         
## HiC_scaffold_78_48126176  "0/1"          NA             "0/0"         
## HiC_scaffold_78_48279096  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_78_48434558  "1|1"          NA             "1|1"         
## HiC_scaffold_78_49759181  "1|1"          NA             "0|1"         
## HiC_scaffold_78_49759192  "1|1"          NA             "0/1"         
## HiC_scaffold_78_49759215  "1/1"          NA             "0/1"         
## HiC_scaffold_78_51364025  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_78_55395445  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_78_59610866  "0/0"          NA             "0/0"         
## HiC_scaffold_78_62136661  "0/1"          NA             "0/1"         
## HiC_scaffold_79_1643780   "1/1"          NA             "0/0"         
## HiC_scaffold_79_2519178   "1/1"          NA             "1/1"         
## HiC_scaffold_79_2858100   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_79_3922454   "0/0"          NA             "0/1"         
## HiC_scaffold_79_4127878   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_79_4543693   "0/0"          NA             NA            
## HiC_scaffold_79_11507678  "0/1"          NA             "0/0"         
## HiC_scaffold_79_12618812  "0/1"          NA             "1/1"         
## HiC_scaffold_79_14185404  "1|1"          NA             "1|1"         
## HiC_scaffold_79_17120237  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_79_17120254  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_79_35551507  NA             "1|1"          "1/1"         
## HiC_scaffold_79_35551543  NA             "1/1"          "1/1"         
## HiC_scaffold_79_38927423  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_79_42623307  NA             "1|1"          "1|1"         
## HiC_scaffold_79_43179786  "1|1"          "0/0"          "0|1"         
## HiC_scaffold_79_43180099  "1/1"          NA             "0/1"         
## HiC_scaffold_79_43828078  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_79_43872513  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_79_44627215  "1/1"          NA             "1/1"         
## HiC_scaffold_79_50772769  "0/1"          NA             "0/0"         
## HiC_scaffold_79_55468575  "0/0"          NA             "0/0"         
## HiC_scaffold_79_55816114  "1/1"          NA             "1/1"         
## HiC_scaffold_79_59915784  "1/1"          NA             "0/0"         
## HiC_scaffold_79_60165298  "0/0"          "0|1"          "0|1"         
## HiC_scaffold_79_60165305  "0/0"          "0|1"          "0/0"         
## HiC_scaffold_79_69145556  "0/0"          NA             "0/1"         
## HiC_scaffold_79_70208305  "0|1"          "0|1"          "0|1"         
## HiC_scaffold_79_73412292  "0/0"          NA             "0/0"         
## HiC_scaffold_79_73416663  NA             NA             "0/0"         
## HiC_scaffold_79_73416688  "0/0"          NA             "0/0"         
## HiC_scaffold_79_76863102  "1/1"          NA             "0/1"         
## HiC_scaffold_79_81279649  "0/0"          NA             "0/0"         
## HiC_scaffold_79_81499990  "1/1"          NA             NA            
## HiC_scaffold_79_82319836  NA             "0/0"          "0|1"         
## HiC_scaffold_79_82319849  NA             "1/1"          "0|1"         
## HiC_scaffold_79_83163707  "1/1"          NA             "0/0"         
## HiC_scaffold_79_86283512  "1/1"          NA             "0/0"         
## HiC_scaffold_79_87123758  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_79_88362889  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_79_88599431  "0/0"          NA             "1/1"         
## HiC_scaffold_79_89322919  NA             "0/0"          "1/1"         
## HiC_scaffold_79_89331918  "1|1"          NA             "1|1"         
## HiC_scaffold_79_91340958  "0/1"          "1|1"          "0/0"         
## HiC_scaffold_8_13649836   "1|1"          NA             "0/1"         
## HiC_scaffold_8_13650752   "1|1"          "1|1"          "0/1"         
## HiC_scaffold_8_23818233   "0/1"          "1/1"          "1/1"         
## HiC_scaffold_8_24123972   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_8_24230791   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_8_24588423   "0/1"          "0/0"          "0|2"         
## HiC_scaffold_8_25348483   "0/1"          "0/0"          NA            
## HiC_scaffold_8_25421933   "1/1"          "0/0"          "0/1"         
## HiC_scaffold_8_25772942   "0/1"          NA             "0/0"         
## HiC_scaffold_8_26289589   "0/0"          NA             "1|1"         
## HiC_scaffold_8_27602740   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_8_28159063   "1/1"          NA             "0/1"         
## HiC_scaffold_8_30829320   "0/0"          "1/1"          "1|1"         
## HiC_scaffold_8_31044084   "1|1"          NA             "0/0"         
## HiC_scaffold_8_31415507   "1|1"          "0/0"          NA            
## HiC_scaffold_8_32594682   NA             "1|1"          "0/1"         
## HiC_scaffold_80_3617847   "1/1"          "0/0"          NA            
## HiC_scaffold_80_5758183   "0/0"          "1|1"          "0/1"         
## HiC_scaffold_80_6760006   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_80_6760037   "1/1"          NA             "0/0"         
## HiC_scaffold_80_7772622   NA             "0/0"          "1/1"         
## HiC_scaffold_80_7919533   "0/1"          NA             "0/1"         
## HiC_scaffold_80_8110052   "1|1"          NA             "1|1"         
## HiC_scaffold_80_8193366   "0/0"          "1/1"          "1/1"         
## HiC_scaffold_80_8625784   NA             "1/1"          "1/1"         
## HiC_scaffold_80_8912846   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_80_9544102   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_80_10770701  "1/1"          NA             "0/1"         
## HiC_scaffold_80_11590146  NA             "0/0"          "1/1"         
## HiC_scaffold_80_16953653  "0/1"          NA             "0/0"         
## HiC_scaffold_80_18938832  "1|1"          NA             NA            
## HiC_scaffold_80_19015946  "1/1"          NA             "0/0"         
## HiC_scaffold_80_19404001  NA             NA             "1/1"         
## HiC_scaffold_80_25346708  "0/0"          "1|1"          NA            
## HiC_scaffold_80_37479851  "1/1"          NA             NA            
## HiC_scaffold_80_37507516  "0/0"          NA             "0/0"         
## HiC_scaffold_81_1187192   NA             "0/0"          "1/1"         
## HiC_scaffold_81_2689826   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_81_2690751   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_81_6614123   NA             "0/1"          "0/1"         
## HiC_scaffold_81_7836855   "1/1"          NA             NA            
## HiC_scaffold_81_10334868  NA             NA             "1/1"         
## HiC_scaffold_81_10458752  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_81_17515538  "0/0"          "1|1"          "0/1"         
## HiC_scaffold_81_40271282  "1/1"          NA             "0/0"         
## HiC_scaffold_81_40271294  "0/0"          NA             "1/1"         
## HiC_scaffold_81_41096427  NA             NA             "0/0"         
## HiC_scaffold_81_41096444  NA             NA             "0/0"         
## HiC_scaffold_81_43820595  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_81_43820732  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_81_43854278  "0/1"          NA             "0/1"         
## HiC_scaffold_81_44804862  "1/1"          NA             "0/1"         
## HiC_scaffold_81_45063428  "0|1"          NA             "0/0"         
## HiC_scaffold_81_45950590  NA             NA             "0/0"         
## HiC_scaffold_81_46714752  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_81_46714759  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_81_47170397  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_81_47628201  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_81_48105216  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_81_48932070  "0/1"          NA             "0/1"         
## HiC_scaffold_81_54050146  "0/0"          NA             "1/1"         
## HiC_scaffold_82_5672063   "1/1"          NA             "1/1"         
## HiC_scaffold_82_8796823   "0|1"          "1|1"          "0/0"         
## HiC_scaffold_82_13450959  "0/0"          NA             "0/0"         
## HiC_scaffold_82_26144442  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_82_26147011  "1|1"          NA             "1|1"         
## HiC_scaffold_82_28907834  "1/1"          "0/0"          NA            
## HiC_scaffold_82_34413793  "1/1"          NA             "0/0"         
## HiC_scaffold_82_34413800  "0/0"          NA             "0/0"         
## HiC_scaffold_82_36173035  "0/1"          NA             "0/0"         
## HiC_scaffold_82_40539273  "1/1"          "1/1"          NA            
## HiC_scaffold_82_41470256  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_83_23993605  NA             "0/0"          NA            
## HiC_scaffold_83_35035961  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_83_43423618  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_83_46920654  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_83_46934197  "0/1"          "0/1"          "0|1"         
## HiC_scaffold_84_356301    "0/0"          "0/0"          NA            
## HiC_scaffold_84_5761817   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_84_5769022   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_84_6288130   "0|1"          "1|1"          "0|1"         
## HiC_scaffold_84_6288141   "1/1"          "1|1"          "1|1"         
## HiC_scaffold_84_6288147   "0/0"          "0/0"          "0|1"         
## HiC_scaffold_84_7069238   "0/0"          NA             "1|1"         
## HiC_scaffold_84_9131309   "0/1"          NA             "0/1"         
## HiC_scaffold_84_10148442  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_84_14659391  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_84_16302752  NA             "1/1"          "2|2"         
## HiC_scaffold_84_18463244  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_84_22909575  "0/0"          NA             "0/0"         
## HiC_scaffold_84_29275266  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_84_31184610  "1|1"          NA             "1/1"         
## HiC_scaffold_84_33093169  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_84_37675180  NA             NA             "1/1"         
## HiC_scaffold_84_39501814  "0/1"          NA             "0/1"         
## HiC_scaffold_84_50169438  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_84_50169445  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_84_51231025  NA             NA             "1/1"         
## HiC_scaffold_85_9792207   "1|1"          NA             "0/1"         
## HiC_scaffold_85_11784233  NA             NA             "0/0"         
## HiC_scaffold_85_11911022  "1|1"          NA             "1|1"         
## HiC_scaffold_85_11911142  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_85_11913828  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_85_11913831  "0/0"          NA             NA            
## HiC_scaffold_85_12353081  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_85_12414551  "0/0"          NA             "0/0"         
## HiC_scaffold_85_13043967  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_85_13221888  "1/1"          NA             "1/1"         
## HiC_scaffold_85_27008863  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_85_28992264  "1|1"          "0|1"          "0/1"         
## HiC_scaffold_85_28992268  "1|1"          "0|1"          "1/1"         
## HiC_scaffold_85_64310850  "0|1"          NA             "1|1"         
## HiC_scaffold_85_65135112  "1|1"          NA             "0/0"         
## HiC_scaffold_85_65563529  "1/1"          NA             NA            
## HiC_scaffold_86_1949664   "1/1"          "0/0"          "1|1"         
## HiC_scaffold_86_5340423   "0/1"          "0/0"          "1/1"         
## HiC_scaffold_86_5483991   "0/1"          NA             "0/0"         
## HiC_scaffold_86_8928469   "0/0"          NA             "0/1"         
## HiC_scaffold_86_23727924  NA             "0/0"          "0/0"         
## HiC_scaffold_86_24825818  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_86_25333718  NA             NA             "1/1"         
## HiC_scaffold_86_29668168  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_86_30914243  "0/0"          NA             "0/0"         
## HiC_scaffold_86_32040320  "0/0"          NA             NA            
## HiC_scaffold_86_32040329  "0/0"          NA             NA            
## HiC_scaffold_86_32125061  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_86_32144758  "0/0"          NA             NA            
## HiC_scaffold_86_32153692  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_86_32534129  "0/0"          NA             "0/0"         
## HiC_scaffold_86_32605768  "0/0"          NA             "0/0"         
## HiC_scaffold_86_36355399  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_86_36357265  "0/0"          NA             "1/1"         
## HiC_scaffold_87_1253643   "1/1"          "1/1"          "0/1"         
## HiC_scaffold_87_2137958   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_87_3980100   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_87_4395923   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_87_5489328   "1|1"          "0/0"          "1|1"         
## HiC_scaffold_87_6300441   "0/0"          "1/1"          "1/1"         
## HiC_scaffold_87_16306904  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_87_44780945  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_88_5584327   "1/1"          NA             "1/1"         
## HiC_scaffold_88_7104630   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_88_7104631   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_88_7104638   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_88_7104639   "1|1"          "0/0"          "1|1"         
## HiC_scaffold_88_7104640   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_88_7479340   "1|1"          NA             "0/0"         
## HiC_scaffold_88_8773607   "1|1"          NA             "1|1"         
## HiC_scaffold_88_9883678   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_88_10878718  "1/1"          NA             "0/0"         
## HiC_scaffold_88_19365116  NA             "1/1"          "1/1"         
## HiC_scaffold_88_20477349  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_88_20557885  "0/0"          NA             "1/1"         
## HiC_scaffold_89_675045    "0/0"          "0/0"          "0/1"         
## HiC_scaffold_89_2815845   "0/0"          "0/0"          NA            
## HiC_scaffold_89_2843940   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_89_3018830   "1/1"          "1/1"          "0/1"         
## HiC_scaffold_89_13745506  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_89_30006907  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_89_36509388  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_89_38703735  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_89_38764895  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_89_42052609  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_89_42054991  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_89_44306958  "0/0"          NA             "1|1"         
## HiC_scaffold_89_44338206  NA             NA             NA            
## HiC_scaffold_89_45298973  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_9_3529921    "1/1"          NA             "0/0"         
## HiC_scaffold_9_5660454    NA             NA             "0/0"         
## HiC_scaffold_9_5660461    NA             NA             "1|1"         
## HiC_scaffold_9_5854070    "0/0"          "1/1"          "1/1"         
## HiC_scaffold_9_6142415    "1|1"          "1|1"          "1|1"         
## HiC_scaffold_9_6142436    "1|1"          "1|1"          "1|1"         
## HiC_scaffold_9_6143781    "1/1"          NA             "1/1"         
## HiC_scaffold_9_6654825    "1/1"          NA             "0/1"         
## HiC_scaffold_9_7094545    "1|1"          "1|1"          "1|1"         
## HiC_scaffold_9_7100208    "1|1"          NA             "1|1"         
## HiC_scaffold_9_7109988    "1/1"          "1/1"          NA            
## HiC_scaffold_9_7111922    "0/1"          "0/0"          "1|1"         
## HiC_scaffold_9_8235781    "1/1"          "1/1"          "0/1"         
## HiC_scaffold_9_8279558    "0/0"          "0/1"          NA            
## HiC_scaffold_9_15679481   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_9_18082611   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_9_18090830   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_9_30240531   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_90_10418696  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_90_11470224  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_90_13593319  NA             NA             "0/0"         
## HiC_scaffold_90_16260161  "1|1"          "0/1"          "0/0"         
## HiC_scaffold_90_22325499  "0/0"          NA             "1/1"         
## HiC_scaffold_90_23574204  "1/1"          "1|1"          NA            
## HiC_scaffold_90_23609908  "0/0"          NA             "0/0"         
## HiC_scaffold_90_23623078  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_90_23626883  "0/0"          NA             "0/0"         
## HiC_scaffold_90_23812663  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_90_25939283  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_90_25985714  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_90_30751272  "1/1"          NA             "0/0"         
## HiC_scaffold_90_31232025  NA             "1|1"          "1|1"         
## HiC_scaffold_90_31245699  "0/0"          NA             "1/1"         
## HiC_scaffold_90_31527975  "0/0"          NA             "0/0"         
## HiC_scaffold_90_31546172  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_90_38511996  "0|1"          "0/0"          NA            
## HiC_scaffold_90_38511999  "0/1"          "1/1"          NA            
## HiC_scaffold_90_38517279  "0/1"          NA             "1/1"         
## HiC_scaffold_90_40624104  "0/0"          NA             "0/1"         
## HiC_scaffold_91_5644765   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_91_5867214   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_91_5867226   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_91_7704263   "0/0"          NA             "0/0"         
## HiC_scaffold_91_7871360   "1/1"          NA             "0/1"         
## HiC_scaffold_91_8538014   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_91_13230485  "1|1"          NA             NA            
## HiC_scaffold_91_28696118  "0/0"          NA             "1/1"         
## HiC_scaffold_91_28696625  "0/0"          NA             "1|1"         
## HiC_scaffold_91_42177482  "0/1"          NA             "0/0"         
## HiC_scaffold_91_46813640  "1/1"          NA             "0/0"         
## HiC_scaffold_92_23783035  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_92_23783036  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_92_24712793  "0/0"          NA             NA            
## HiC_scaffold_92_28698258  "0|1"          NA             "1/1"         
## HiC_scaffold_92_40691582  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_92_43967712  "0/0"          "0/0"          NA            
## HiC_scaffold_92_47147572  "1|1"          NA             "0|1"         
## HiC_scaffold_92_49042714  "0/0"          NA             "0|1"         
## HiC_scaffold_92_49042715  "0/0"          NA             "0|1"         
## HiC_scaffold_92_53634002  "1/1"          NA             "0/0"         
## HiC_scaffold_92_58211868  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_92_60114155  NA             "0/0"          "0/0"         
## HiC_scaffold_92_63603483  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_92_64797225  NA             "0/0"          "0/0"         
## HiC_scaffold_92_68367476  "0/0"          NA             "0/0"         
## HiC_scaffold_93_1912167   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_93_2485978   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_93_3227638   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_93_3227641   "0/1"          "1|1"          "0|1"         
## HiC_scaffold_93_13971208  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_93_13987080  "1/1"          NA             "0/0"         
## HiC_scaffold_93_21125468  "0/0"          NA             "1/1"         
## HiC_scaffold_93_21845293  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_93_21845310  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_93_21846342  "0/0"          NA             "0/0"         
## HiC_scaffold_93_21846356  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_93_22589723  "1/1"          "1/1"          NA            
## HiC_scaffold_93_22619278  "1/1"          NA             "1/1"         
## HiC_scaffold_93_22631258  "0/0"          NA             "0|1"         
## HiC_scaffold_93_22631266  "0/0"          NA             "0|1"         
## HiC_scaffold_94_3110102   "0|1"          NA             NA            
## HiC_scaffold_94_3205919   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_94_9023846   "1/1"          NA             NA            
## HiC_scaffold_94_11572820  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_94_12368532  NA             "1/1"          "0/0"         
## HiC_scaffold_94_42179418  "1/1"          NA             "1/1"         
## HiC_scaffold_94_42179519  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_94_51646206  "0/0"          "0/0"          NA            
## HiC_scaffold_94_52781289  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_94_53790035  NA             NA             "0/1"         
## HiC_scaffold_94_53792738  NA             "0/0"          "1/1"         
## HiC_scaffold_94_56768905  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_946_81276    "1/1"          "1/1"          "1/1"         
## HiC_scaffold_95_3189690   NA             NA             "1/1"         
## HiC_scaffold_95_4397298   "1|1"          NA             "1|1"         
## HiC_scaffold_95_9469157   "1|1"          NA             "0/0"         
## HiC_scaffold_95_10641411  NA             "1/1"          "1/1"         
## HiC_scaffold_95_10949821  NA             NA             "1/1"         
## HiC_scaffold_95_12993394  "1|1"          NA             "0/0"         
## HiC_scaffold_95_15515793  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_95_15608785  "1|1"          NA             "0/0"         
## HiC_scaffold_95_15609137  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_95_16295316  "0/0"          "0/0"          NA            
## HiC_scaffold_95_22656165  "1|1"          NA             "0|1"         
## HiC_scaffold_95_25885727  "0/0"          "0/0"          NA            
## HiC_scaffold_96_10460019  "0/0"          NA             "0/0"         
## HiC_scaffold_96_27155785  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_96_37939434  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_96_51115048  "0|1"          NA             "1|1"         
## HiC_scaffold_96_51116511  "1/1"          NA             "0/0"         
## HiC_scaffold_96_51915040  "0|1"          NA             "1|1"         
## HiC_scaffold_96_52681287  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_96_53276519  NA             "0/0"          "0/0"         
## HiC_scaffold_97_1736926   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_97_1736994   "1|1"          NA             "1|1"         
## HiC_scaffold_97_3863543   "1|1"          NA             "1/1"         
## HiC_scaffold_97_4200445   "0/0"          NA             "1/1"         
## HiC_scaffold_97_4799162   NA             NA             NA            
## HiC_scaffold_97_5027892   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_97_8007933   "1|1"          "1/1"          NA            
## HiC_scaffold_97_17997210  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_97_18604647  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_97_20239636  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_98_15154096  NA             "0/0"          "0/0"         
## HiC_scaffold_98_22342667  "1/1"          NA             "1|1"         
## HiC_scaffold_98_22634293  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_98_22634294  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_98_22721138  "1/1"          NA             "1/1"         
## HiC_scaffold_98_22869378  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_98_24108405  "0/0"          NA             "0/0"         
## HiC_scaffold_98_27359592  "0|1"          NA             NA            
## HiC_scaffold_98_28549834  NA             "0/0"          "0/0"         
## HiC_scaffold_98_28867520  NA             NA             "1|1"         
## HiC_scaffold_98_28867524  NA             "0/0"          "1|1"         
## HiC_scaffold_98_29431717  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_98_29675109  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_99_1163244   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_99_1451611   "0/0"          NA             "0/0"         
## HiC_scaffold_99_2021961   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_99_5134392   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_99_5239109   "0/0"          NA             "1/1"         
## HiC_scaffold_99_6917738   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_99_11221970  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_99_25982503  "0/1"          NA             "1/1"         
##                           Tank_11_Crab_1 Tank_11_Crab_2 Tank_11_Crab_3
## HiC_scaffold_1_2523394    NA             "0/0"          "0/1"         
## HiC_scaffold_1_2542157    "0/0"          "0/0"          "0/0"         
## HiC_scaffold_1_2647806    NA             NA             NA            
## HiC_scaffold_1_2970226    "0/0"          "0/0"          "0/0"         
## HiC_scaffold_1_3329447    "0/0"          "0/1"          "0/0"         
## HiC_scaffold_1_3795100    "1|1"          "0|1"          "1|1"         
## HiC_scaffold_10_2221345   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_10_2299490   "0/0"          "1|1"          "0/1"         
## HiC_scaffold_10_2565301   NA             "1/1"          "0/0"         
## HiC_scaffold_10_3864355   "1/1"          "0/1"          "0/0"         
## HiC_scaffold_10_4319900   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_10_4319907   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_10_5404579   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_10_5843373   "0/0"          NA             "1/1"         
## HiC_scaffold_100_854947   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_100_1070817  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_100_2002094  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_100_2002097  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_100_2010331  "1|1"          "0/0"          "0/1"         
## HiC_scaffold_100_5186498  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_100_5828477  "0/0"          "0/0"          NA            
## HiC_scaffold_100_6470419  "0/0"          NA             "0/0"         
## HiC_scaffold_100_6739225  NA             "1/1"          "1/1"         
## HiC_scaffold_100_6739258  NA             "1|1"          "1|1"         
## HiC_scaffold_100_6739264  NA             "1|1"          "1|1"         
## HiC_scaffold_100_6907177  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_100_8384481  "1|1"          "0/1"          "1/1"         
## HiC_scaffold_100_8384495  "1|1"          "0/0"          "0|1"         
## HiC_scaffold_100_9451470  "0/0"          "0/2"          "0/0"         
## HiC_scaffold_100_10464574 "0/0"          "0/1"          NA            
## HiC_scaffold_100_11934792 "0|1"          "1|1"          NA            
## HiC_scaffold_100_11980177 "0/1"          NA             "1/1"         
## HiC_scaffold_100_18465760 "0/0"          "1|1"          "0/0"         
## HiC_scaffold_100_18465762 "0/0"          "1|1"          "0/0"         
## HiC_scaffold_100_18466205 "0/0"          "1|1"          "0/0"         
## HiC_scaffold_100_31738115 "1/1"          "1/1"          "1/1"         
## HiC_scaffold_100_44227362 "0/0"          "0/0"          "0/0"         
## HiC_scaffold_101_12808961 NA             "1|1"          "0|1"         
## HiC_scaffold_101_13897149 "1/1"          NA             "1/1"         
## HiC_scaffold_101_18337279 "0/1"          "0/1"          "0/0"         
## HiC_scaffold_101_20800167 "0/1"          "1/1"          "1/1"         
## HiC_scaffold_102_2260041  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_102_8734519  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_102_10233999 "1|1"          "1|1"          "0/0"         
## HiC_scaffold_102_11446042 NA             NA             NA            
## HiC_scaffold_102_15918694 "0/0"          NA             NA            
## HiC_scaffold_102_15935667 "0/0"          "1/1"          "0/1"         
## HiC_scaffold_102_17442643 "0/1"          "1/1"          "1|1"         
## HiC_scaffold_102_17608969 "0/0"          "0/0"          "0/0"         
## HiC_scaffold_102_20180185 "0/0"          "1/1"          "0/1"         
## HiC_scaffold_102_24788723 NA             "1|1"          "0/0"         
## HiC_scaffold_102_25423729 "1|1"          NA             "1|1"         
## HiC_scaffold_102_39755142 NA             "0|1"          "0/1"         
## HiC_scaffold_102_52046978 "0/0"          "0/1"          "0/1"         
## HiC_scaffold_1027_34152   "1/1"          "0/1"          "0/0"         
## HiC_scaffold_103_601715   "0/1"          "1/1"          "1/1"         
## HiC_scaffold_103_2891384  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_103_8191270  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_103_9521272  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_103_14768909 "1|1"          "0/0"          "0/0"         
## HiC_scaffold_103_19312119 "1|1"          "1|1"          "0/0"         
## HiC_scaffold_103_21284866 "1/1"          "0/0"          "0/1"         
## HiC_scaffold_103_31428453 "0/0"          NA             "1|1"         
## HiC_scaffold_103_42567396 "0/1"          "0/0"          "0/1"         
## HiC_scaffold_103_45921571 "0|1"          "1|1"          "0|1"         
## HiC_scaffold_103_45921573 "0|1"          "1|1"          "0|1"         
## HiC_scaffold_103_49592022 "0/1"          NA             "0/1"         
## HiC_scaffold_103_49620132 "1|1"          "1|1"          "0/0"         
## HiC_scaffold_103_50440915 "0/1"          "1|1"          "0/0"         
## HiC_scaffold_103_51944137 "0/0"          NA             "1/1"         
## HiC_scaffold_103_54308582 "1|1"          "0/0"          "1|1"         
## HiC_scaffold_103_54424067 "1|1"          "0/0"          NA            
## HiC_scaffold_103_56932900 "1/1"          NA             "1/1"         
## HiC_scaffold_103_57470264 "1|1"          "1|1"          "1|1"         
## HiC_scaffold_104_7771140  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_104_9103028  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_104_10633168 "1/1"          "0/1"          "0/1"         
## HiC_scaffold_104_18917031 "1/1"          "0/0"          NA            
## HiC_scaffold_104_20851902 "0/0"          "0/0"          "0/1"         
## HiC_scaffold_104_24451803 "0/0"          "1/1"          "0/0"         
## HiC_scaffold_104_28597688 "0/1"          "0/1"          "0/1"         
## HiC_scaffold_104_40927999 "0/1"          NA             "0/1"         
## HiC_scaffold_104_46490074 "1/1"          "0/0"          "0/1"         
## HiC_scaffold_104_49759053 "0/0"          "0/0"          "0/0"         
## HiC_scaffold_104_57267896 "0/1"          "0/1"          "0/0"         
## HiC_scaffold_104_62570010 "1/1"          "1/1"          "0/0"         
## HiC_scaffold_11_32804173  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_11_34516508  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_11_35332996  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_11_35904027  NA             "0/0"          "1/1"         
## HiC_scaffold_11_41539793  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_11_41604080  "1/1"          "1|1"          "1|1"         
## HiC_scaffold_11_42855323  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_11_45339409  "0/1"          "0/1"          "0|1"         
## HiC_scaffold_11_45339410  "0/1"          "0/1"          "0/1"         
## HiC_scaffold_11_47544035  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_12_7515164   "0/1"          "0/1"          "0/1"         
## HiC_scaffold_12_12640100  NA             "1/1"          "0/0"         
## HiC_scaffold_12_12826705  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_12_14899285  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_12_17465672  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_12_22770710  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_12_32318964  "0/0"          NA             NA            
## HiC_scaffold_12_35136373  "0/0"          "0|1"          "0|1"         
## HiC_scaffold_12_40687860  "1|1"          "0/1"          "0/0"         
## HiC_scaffold_13_2938168   "1/1"          "1/1"          NA            
## HiC_scaffold_13_20350974  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_13_27759554  "0/1"          "0/1"          "0/1"         
## HiC_scaffold_13_28146828  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_13_28146830  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_13_28925343  "1/1"          "1/1"          "1/2"         
## HiC_scaffold_13_31913129  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_13_32078924  "1|1"          "0/1"          "0/0"         
## HiC_scaffold_13_33864805  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_13_34892542  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_13_34893103  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_13_35762551  "0|1"          "0/0"          "0|1"         
## HiC_scaffold_13_35881745  NA             "1/1"          "1/1"         
## HiC_scaffold_13_35881749  NA             "0/0"          "0/1"         
## HiC_scaffold_14_3843214   "1/1"          "0/0"          NA            
## HiC_scaffold_14_25884262  "0/0"          "0/0"          NA            
## HiC_scaffold_14_27050415  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_14_27118495  "1/1"          NA             "1/1"         
## HiC_scaffold_14_27277222  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_14_29215814  NA             "1|1"          "1|1"         
## HiC_scaffold_15_2460398   "0|1"          "1|1"          "0/0"         
## HiC_scaffold_15_2462980   "0/0"          "1/1"          "0/1"         
## HiC_scaffold_15_2467289   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_15_5669141   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_15_13700694  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_15_17825275  "0|1"          "1|1"          "0|1"         
## HiC_scaffold_15_19938475  "0/1"          "1/1"          "1|1"         
## HiC_scaffold_15_23865956  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_15_28837774  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_15_28837810  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_15_28837823  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_15_28837835  "1|1"          "0/0"          "0|1"         
## HiC_scaffold_15_28837841  "1|1"          "0/0"          "0|1"         
## HiC_scaffold_15_28837854  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_15_34827832  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_15_34893807  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_15_35327348  "0/0"          NA             NA            
## HiC_scaffold_15_42161112  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_15_42164926  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_15_42164946  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_15_46289572  NA             "1/1"          "1/1"         
## HiC_scaffold_15_50591576  "1|1"          NA             "1|1"         
## HiC_scaffold_15_50759128  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_15_51188336  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_15_54726640  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_15_54788235  "0/0"          "0|1"          "0/1"         
## HiC_scaffold_15_56162375  "0|1"          NA             "0/0"         
## HiC_scaffold_15_61091106  NA             "1/1"          "0/0"         
## HiC_scaffold_15_61464359  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_15_61510386  "0|1"          "0/0"          "1/1"         
## HiC_scaffold_15_62309788  NA             "0/0"          "0|1"         
## HiC_scaffold_15_62309793  NA             "0/0"          "0|1"         
## HiC_scaffold_15_62771254  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_15_63493927  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_15_64997502  "0/1"          "0|1"          NA            
## HiC_scaffold_15_65007865  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_15_65007879  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_15_66038529  "0|1"          "0/1"          "0/0"         
## HiC_scaffold_15_69811281  "1/1"          "1/1"          NA            
## HiC_scaffold_16_14205925  "0|1"          NA             NA            
## HiC_scaffold_16_30404047  "0|1"          NA             "0/1"         
## HiC_scaffold_16_57413288  NA             "1|1"          "1|1"         
## HiC_scaffold_16_63687578  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_16_74138787  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_16_74140106  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_16_76276015  "0/1"          "0/0"          NA            
## HiC_scaffold_17_11390873  "1|1"          NA             "0/0"         
## HiC_scaffold_17_12551128  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_17_16615612  "0/0"          "1/1"          NA            
## HiC_scaffold_17_18838093  NA             "0/0"          "1/1"         
## HiC_scaffold_17_22801072  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_17_23788599  "0/0"          "1|1"          "1/1"         
## HiC_scaffold_17_29383895  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_17_29618771  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_17_29976139  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_17_31107213  "1/1"          "1|1"          "0/1"         
## HiC_scaffold_17_32493792  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_17_33732050  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_17_33801314  NA             "0/0"          "0/1"         
## HiC_scaffold_17_34081889  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_18_227565    "0/1"          "1/1"          "1/1"         
## HiC_scaffold_18_1213486   "1/1"          "1/1"          "0/1"         
## HiC_scaffold_18_1701312   "0/0"          "0|1"          "2/2"         
## HiC_scaffold_18_3506437   NA             "1/1"          "1/1"         
## HiC_scaffold_18_6304978   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_18_6351493   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_18_6358009   NA             "0/0"          "0/0"         
## HiC_scaffold_18_10770701  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_18_13342858  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_18_20045832  "0/0"          NA             "0/0"         
## HiC_scaffold_18_22682683  "0/0"          NA             "0/0"         
## HiC_scaffold_18_26337790  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_18_48929148  "1/1"          "1|1"          "0/1"         
## HiC_scaffold_18_51490626  NA             "0/0"          NA            
## HiC_scaffold_18_53723137  "0|1"          "0|1"          "0/1"         
## HiC_scaffold_18_54496637  "0|0"          NA             "0|1"         
## HiC_scaffold_18_55294388  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_19_279726    "0/0"          "0/0"          "0/1"         
## HiC_scaffold_19_6426572   NA             "0/0"          "0/1"         
## HiC_scaffold_19_6575887   "1|1"          "1|1"          "0/1"         
## HiC_scaffold_19_7755254   "0/0"          "0/1"          "1/1"         
## HiC_scaffold_19_9301421   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_19_9357388   "0/1"          "0/0"          "1|1"         
## HiC_scaffold_19_9778841   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_19_10928976  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_19_10928980  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_19_10928982  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_19_11106347  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_19_11590139  "0/1"          "1/1"          "0/1"         
## HiC_scaffold_19_11665300  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_19_14793640  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_19_22112743  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_19_25473671  NA             "1/1"          "0/1"         
## HiC_scaffold_19_25473692  NA             "0/0"          "0/0"         
## HiC_scaffold_19_28110829  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_19_28465002  NA             "1|1"          "0/1"         
## HiC_scaffold_19_28465167  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_19_30106869  NA             "0/1"          "0/1"         
## HiC_scaffold_19_52538858  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_19_52596196  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_19_53482993  "0/1"          "1/1"          "0/1"         
## HiC_scaffold_19_54312637  "1/1"          NA             "1/1"         
## HiC_scaffold_19_59345841  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_2_3296144    "1|1"          "1|1"          "1|1"         
## HiC_scaffold_2_3418589    "0/1"          "1/1"          "0/0"         
## HiC_scaffold_2_3864060    "0/1"          "0/0"          "1/1"         
## HiC_scaffold_2_4104755    "0/0"          "0/0"          "0/0"         
## HiC_scaffold_2_4104758    "0/0"          "0/0"          "0/0"         
## HiC_scaffold_2_8316721    "0/1"          NA             "0/0"         
## HiC_scaffold_2_9098999    "1/1"          "0/0"          NA            
## HiC_scaffold_2_10457537   "1/1"          "1/1"          NA            
## HiC_scaffold_2_19048125   "1/1"          "0/1"          "1/1"         
## HiC_scaffold_2_21748201   "1/1"          "0/0"          "1|1"         
## HiC_scaffold_2_33187764   "0/0"          "0|1"          "1|1"         
## HiC_scaffold_2_33187770   "0/0"          "0|1"          "1|1"         
## HiC_scaffold_2_33187959   NA             "1/1"          "0/0"         
## HiC_scaffold_2_41603929   "1/1"          "0/1"          "1/1"         
## HiC_scaffold_2_52233191   "1/1"          "0/1"          "0/0"         
## HiC_scaffold_2_52400748   "1/1"          "1|1"          "0/0"         
## HiC_scaffold_2_52403793   "0/1"          "1|1"          NA            
## HiC_scaffold_2_52799130   "1|1"          NA             "0/1"         
## HiC_scaffold_20_10332897  "0/0"          NA             "0/1"         
## HiC_scaffold_20_17198418  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_20_17915398  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_20_18872955  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_20_19055301  "1/1"          NA             "1/1"         
## HiC_scaffold_20_19150094  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_20_20651022  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_20_22651296  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_21_2009156   "0/1"          "0|1"          "1|1"         
## HiC_scaffold_21_2435648   "1/1"          NA             "0/0"         
## HiC_scaffold_21_7164210   "0/0"          "1|1"          "0|1"         
## HiC_scaffold_21_9786512   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_21_12424922  "1|1"          NA             "0/0"         
## HiC_scaffold_21_17966833  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_21_19025429  "0/1"          "1/1"          NA            
## HiC_scaffold_21_20058318  "0|1"          "0/1"          "0/0"         
## HiC_scaffold_21_20562855  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_21_20661860  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_21_20895395  "0/0"          "0/0"          NA            
## HiC_scaffold_21_21158811  "1|1"          "2|2"          "1|1"         
## HiC_scaffold_21_22250857  "0/1"          "0/1"          "0/1"         
## HiC_scaffold_21_22250866  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_21_22257737  NA             "1/1"          NA            
## HiC_scaffold_21_22644667  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_21_22644673  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_21_22666888  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_21_23905416  NA             NA             "0/0"         
## HiC_scaffold_21_23981651  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_21_24287068  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_21_30798434  "0/0"          NA             "1|1"         
## HiC_scaffold_21_35006232  NA             "0/0"          "1/1"         
## HiC_scaffold_21_35779294  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_22_124910    "0/0"          "0/0"          "0/1"         
## HiC_scaffold_22_751023    "1/1"          "1/1"          "1/1"         
## HiC_scaffold_22_1042644   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_22_1044708   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_22_2174911   "0/1"          "0/0"          "1/1"         
## HiC_scaffold_22_3431122   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_22_3446787   "1|1"          "0|1"          "1|1"         
## HiC_scaffold_22_3451756   "1|1"          "1|1"          NA            
## HiC_scaffold_22_3720435   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_22_4065466   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_22_4739889   "0/0"          "0/2"          "0/0"         
## HiC_scaffold_22_4918263   "1|1"          NA             "1|1"         
## HiC_scaffold_22_5750008   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_22_5769942   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_22_28264522  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_22_28265115  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_22_29205851  NA             "1/1"          "0/1"         
## HiC_scaffold_22_29822340  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_22_30797357  "1/1"          "0|1"          "1/1"         
## HiC_scaffold_22_32042610  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_23_11215327  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_23_27081333  "0/1"          "1/1"          "0/1"         
## HiC_scaffold_23_28672255  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_23_29218828  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_23_32528768  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_23_32669383  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_23_33199663  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_23_33245843  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_23_40824545  "0|1"          "1|1"          "0/0"         
## HiC_scaffold_23_41504669  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_24_16622654  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_24_16622681  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_24_19851560  "1|1"          "1/1"          "1/1"         
## HiC_scaffold_24_20590563  "0/0"          "1/1"          NA            
## HiC_scaffold_24_27745754  "0/1"          "0/1"          "1/1"         
## HiC_scaffold_24_28763699  "1|1"          "0|1"          "0/0"         
## HiC_scaffold_24_28763703  "1|1"          "1/1"          "0/0"         
## HiC_scaffold_25_4135969   "0/0"          NA             "1/1"         
## HiC_scaffold_25_4201677   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_25_5872831   "0/1"          "1/1"          "0/0"         
## HiC_scaffold_25_6879627   "0/0"          "1/1"          "1/1"         
## HiC_scaffold_25_8172813   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_25_9969507   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_25_10691336  NA             "1|1"          "0/1"         
## HiC_scaffold_25_21286462  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_26_4086662   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_26_7539671   "0/1"          "0/1"          "0/0"         
## HiC_scaffold_26_8348511   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_26_9043748   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_26_9045655   NA             "0/0"          "0/1"         
## HiC_scaffold_26_11253181  NA             "1|1"          "0|1"         
## HiC_scaffold_26_17828344  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_26_17932520  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_26_17941459  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_26_17960877  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_26_18284041  NA             "0/1"          "0/1"         
## HiC_scaffold_26_18288701  "1|1"          "0|1"          "1|1"         
## HiC_scaffold_26_18294422  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_26_21307365  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_26_22159924  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_26_22161535  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_26_24794176  NA             "0/0"          "0/0"         
## HiC_scaffold_26_28538113  "0/0"          "1|1"          NA            
## HiC_scaffold_26_29031357  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_26_29163462  NA             "1/1"          "0/1"         
## HiC_scaffold_26_42631018  "0/0"          "1|1"          NA            
## HiC_scaffold_26_42634814  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_26_43483190  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_26_49955889  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_26_58342510  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_27_1496120   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_27_1947057   "0/0"          "1|1"          "0/1"         
## HiC_scaffold_27_2359058   "1|1"          NA             "1|1"         
## HiC_scaffold_27_2699645   "0/1"          "0/0"          "0/1"         
## HiC_scaffold_27_4425475   "1|1"          NA             "1|1"         
## HiC_scaffold_27_7539469   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_27_7777122   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_27_16657070  "0/1"          NA             "1/1"         
## HiC_scaffold_27_24539255  "0/0"          "0|1"          "0/1"         
## HiC_scaffold_27_34642359  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_27_34647277  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_27_35380535  "1/1"          NA             "1/1"         
## HiC_scaffold_27_35383230  "0/1"          "1|1"          "0/0"         
## HiC_scaffold_28_21261390  "1|1"          "0|1"          "0|1"         
## HiC_scaffold_28_24490442  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_28_25601927  NA             "1/1"          "0/0"         
## HiC_scaffold_28_31793968  NA             "1/1"          "0/0"         
## HiC_scaffold_28_32126687  "0/0"          "0/0"          "0/2"         
## HiC_scaffold_28_34779518  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_28_36042491  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_28_36692361  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_28_38672993  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_28_39640526  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_28_40169242  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_28_41059640  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_28_42514830  "0/0"          "1/1"          NA            
## HiC_scaffold_28_42601570  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_28_42601585  "0/1"          NA             "0/0"         
## HiC_scaffold_28_43018803  NA             "0/0"          NA            
## HiC_scaffold_28_43036165  NA             NA             "0/0"         
## HiC_scaffold_29_344317    "0/0"          "1/1"          "0/0"         
## HiC_scaffold_29_3811176   NA             "0/0"          "0/1"         
## HiC_scaffold_29_6073993   "0/0"          "0|1"          "1|1"         
## HiC_scaffold_29_6415222   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_29_8224424   "0/0"          NA             "0/1"         
## HiC_scaffold_29_11153624  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_29_11153712  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_29_11167966  "1|1"          "1/1"          "0/1"         
## HiC_scaffold_29_11491468  "0/1"          "0/1"          "0/0"         
## HiC_scaffold_29_12103558  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_29_14279322  "0/1"          NA             "1/1"         
## HiC_scaffold_29_14913907  "0/0"          NA             "0/1"         
## HiC_scaffold_29_16378276  "1/1"          NA             "1/1"         
## HiC_scaffold_29_20635937  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_29_20636787  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_29_22560215  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_29_22561144  NA             "0/1"          "1/1"         
## HiC_scaffold_29_24017849  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_29_31603590  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_3_21670751   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_3_24747014   "0/1"          "0/1"          "0/0"         
## HiC_scaffold_3_27861792   "0/1"          "1/1"          "0/0"         
## HiC_scaffold_3_28057869   "0/1"          NA             "0/1"         
## HiC_scaffold_3_28441436   NA             NA             "1/1"         
## HiC_scaffold_3_28694380   NA             "0/0"          "0/0"         
## HiC_scaffold_3_31361023   "1|1"          NA             "0/1"         
## HiC_scaffold_3_31960572   "1|1"          "0/1"          "0/0"         
## HiC_scaffold_3_32157169   "0/1"          "0/0"          "0/1"         
## HiC_scaffold_3_32159152   "0/1"          "0/1"          "0/0"         
## HiC_scaffold_3_34124237   "0/0"          NA             "0/0"         
## HiC_scaffold_30_14199802  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_30_16052331  "1/1"          NA             "1/1"         
## HiC_scaffold_30_19914075  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_30_20688783  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_30_21446076  "0|2"          "0|1"          "0/0"         
## HiC_scaffold_30_21598563  NA             NA             "0/1"         
## HiC_scaffold_30_22155728  NA             "0/0"          "0/0"         
## HiC_scaffold_31_687411    "0/1"          "1/1"          "1/1"         
## HiC_scaffold_31_3224722   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_31_3574854   "1/1"          "0/1"          "0/0"         
## HiC_scaffold_31_5899551   "1|1"          "1/1"          "1|1"         
## HiC_scaffold_31_5911491   "1|1"          NA             "0|1"         
## HiC_scaffold_31_6297680   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_31_12394016  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_31_12394040  NA             "1|1"          "0/0"         
## HiC_scaffold_31_18612650  "0/1"          "1/1"          "0/1"         
## HiC_scaffold_32_4446859   "1/1"          "0/1"          "0/0"         
## HiC_scaffold_32_5274796   "1/1"          "0/0"          NA            
## HiC_scaffold_32_5275108   "0/0"          NA             "0/0"         
## HiC_scaffold_32_5282358   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_32_5450203   "1|1"          "0/0"          NA            
## HiC_scaffold_32_44200178  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_33_638523    "1/1"          "1/1"          "0/0"         
## HiC_scaffold_33_44489563  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_33_44489988  "0/0"          NA             "0/0"         
## HiC_scaffold_33_47080180  NA             "0/0"          "1/1"         
## HiC_scaffold_33_47495907  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_33_51865876  "0/1"          "0/1"          "0/0"         
## HiC_scaffold_34_1096982   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_34_6091943   "0|1"          "1|1"          "1|1"         
## HiC_scaffold_34_6100160   "0|1"          "1|1"          "1|1"         
## HiC_scaffold_34_24368584  "0/0"          NA             "0/0"         
## HiC_scaffold_35_3233120   "0/1"          "0/1"          "0/1"         
## HiC_scaffold_35_3253574   "1/1"          "0/0"          "0/1"         
## HiC_scaffold_35_5512296   "1/1"          "0/1"          "0/0"         
## HiC_scaffold_35_15114788  "1/1"          NA             "0/1"         
## HiC_scaffold_35_21214090  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_35_21462564  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_35_22746783  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_35_22747085  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_35_23059580  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_35_23158882  NA             "0/0"          "1/1"         
## HiC_scaffold_35_23261143  "1/1"          NA             "1/1"         
## HiC_scaffold_35_24403602  "0/0"          NA             "1/1"         
## HiC_scaffold_35_24403620  "1/1"          NA             "1/1"         
## HiC_scaffold_35_24993986  "1/1"          "0/1"          "0/1"         
## HiC_scaffold_35_24993998  "0/1"          "0|1"          "0/0"         
## HiC_scaffold_36_1538038   "0/0"          "0/1"          "0/1"         
## HiC_scaffold_36_2464728   "1/1"          "0|1"          "0|1"         
## HiC_scaffold_36_5489050   "0/0"          NA             "1/1"         
## HiC_scaffold_36_9673981   "0|1"          "0/1"          "0/1"         
## HiC_scaffold_36_9674127   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_36_9674756   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_36_9676329   "0/1"          NA             "0/1"         
## HiC_scaffold_36_12304516  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_36_12515555  "1|1"          "0/0"          "0|1"         
## HiC_scaffold_36_13092647  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_36_13766994  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_36_14567741  "0/1"          "0/1"          NA            
## HiC_scaffold_36_15530578  "1|1"          NA             "1|1"         
## HiC_scaffold_37_679894    "1/1"          "1/1"          "1/1"         
## HiC_scaffold_37_916693    "1/1"          "1|1"          NA            
## HiC_scaffold_37_928146    "1/1"          "0|1"          "1/1"         
## HiC_scaffold_37_1256768   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_37_1270034   "1/1"          "0/1"          "1/1"         
## HiC_scaffold_37_1770997   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_37_1798298   "0/0"          NA             "0/0"         
## HiC_scaffold_37_2010342   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_37_2141526   NA             "1/1"          "0/0"         
## HiC_scaffold_37_3952190   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_37_3952215   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_37_9915037   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_38_5383430   "0/0"          "1/1"          "0/1"         
## HiC_scaffold_38_5668363   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_38_5879849   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_38_5880155   "0/1"          NA             "1/1"         
## HiC_scaffold_38_10612790  "1/1"          "0/1"          "0/1"         
## HiC_scaffold_38_11940240  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_38_12878826  NA             "0/0"          NA            
## HiC_scaffold_38_12959698  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_38_13087368  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_38_13480648  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_38_13965243  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_38_14089955  "0/0"          NA             "1/1"         
## HiC_scaffold_38_14408072  "0/0"          "0/1"          "1|1"         
## HiC_scaffold_38_14931216  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_38_14978356  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_38_14978367  "0/0"          NA             "0/0"         
## HiC_scaffold_38_15292863  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_38_15306135  "0/0"          "0/0"          NA            
## HiC_scaffold_38_16077506  "0/1"          "1|1"          "0/0"         
## HiC_scaffold_38_16138965  NA             "0/1"          "0/1"         
## HiC_scaffold_38_16226040  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_39_1393769   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_39_2014970   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_39_2014982   "0|1"          "0/0"          "0/0"         
## HiC_scaffold_39_2014985   "0|1"          "0/0"          "0/0"         
## HiC_scaffold_39_2426443   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_39_2485330   "1/1"          "1|1"          "1|1"         
## HiC_scaffold_39_3350506   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_39_5897388   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_39_17631133  "0/1"          "1/1"          "0/1"         
## HiC_scaffold_4_12107187   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_4_18241670   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_4_18241723   "1/1"          "1/1"          "1|1"         
## HiC_scaffold_4_22418566   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_4_27899990   "0/1"          NA             "0/0"         
## HiC_scaffold_4_35575118   NA             "0/0"          "0/1"         
## HiC_scaffold_4_38000967   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_4_50654021   "1|1"          NA             "1|1"         
## HiC_scaffold_40_2243415   NA             "0/1"          "0/0"         
## HiC_scaffold_40_3000572   "1/1"          "0/0"          "0/1"         
## HiC_scaffold_40_3014177   "1/1"          NA             "1/1"         
## HiC_scaffold_40_3027900   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_40_3143834   "0/0"          "0/1"          "0/1"         
## HiC_scaffold_40_3843942   "0/0"          "1|2"          "1/1"         
## HiC_scaffold_40_3847620   "1|1"          "0|1"          "0/0"         
## HiC_scaffold_40_3891007   "0/0"          "1/1"          "1/1"         
## HiC_scaffold_40_3920667   NA             "2/2"          "0/0"         
## HiC_scaffold_40_4177963   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_40_4819107   "0/0"          NA             "1/1"         
## HiC_scaffold_40_4819834   "0|1"          NA             "0/0"         
## HiC_scaffold_40_5788271   "1/1"          "1/1"          "0|1"         
## HiC_scaffold_40_5965269   "1|1"          "1/1"          "1|1"         
## HiC_scaffold_40_6204154   NA             "0/0"          "0/1"         
## HiC_scaffold_40_8387917   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_41_3235384   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_41_3583000   "0/0"          NA             "1/1"         
## HiC_scaffold_41_5334504   "1|1"          "1/1"          "1/1"         
## HiC_scaffold_41_5387631   "0/0"          NA             "0/0"         
## HiC_scaffold_41_6423426   NA             NA             "1/1"         
## HiC_scaffold_41_14359947  NA             "0/0"          "1/1"         
## HiC_scaffold_41_24007593  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_41_26225447  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_41_28626484  "1/1"          NA             "1/1"         
## HiC_scaffold_41_28660620  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_41_31007688  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_42_1131084   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_42_1818523   "0/0"          NA             "1/1"         
## HiC_scaffold_42_2165002   "0/0"          NA             "0/0"         
## HiC_scaffold_42_2711332   "0/0"          "0/1"          "0/0"         
## HiC_scaffold_42_6142699   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_42_6744976   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_42_8066919   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_42_8068292   "1|1"          "0/0"          NA            
## HiC_scaffold_42_12487888  "0|1"          "1|1"          "0|1"         
## HiC_scaffold_42_41366687  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_42_47313337  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_42_47313338  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_42_50784971  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_42_50784977  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_42_50784981  "0/0"          NA             "1/1"         
## HiC_scaffold_42_51916989  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_43_3842003   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_43_14140861  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_43_15053605  "1/1"          "1|1"          "1/1"         
## HiC_scaffold_43_17289945  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_43_29967704  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_43_35745831  NA             "0/0"          "1|1"         
## HiC_scaffold_43_37627949  "0/1"          "0|1"          "0|1"         
## HiC_scaffold_43_37628126  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_43_44017118  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_43_55124138  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_43_60107326  "0|1"          "0|1"          "0|1"         
## HiC_scaffold_43_61359386  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_43_61702593  "1|1"          "1|1"          "0|1"         
## HiC_scaffold_43_61702606  "1|1"          "1|1"          "0|1"         
## HiC_scaffold_43_61702721  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_43_61702738  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_43_62511703  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_43_64069457  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_43_64577269  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_44_1920144   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_44_2148035   "0/1"          "0/0"          "0/1"         
## HiC_scaffold_44_2568167   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_45_4180070   "1/1"          "0/1"          "1/1"         
## HiC_scaffold_45_4797754   NA             "0/2"          "0/1"         
## HiC_scaffold_45_5911123   "0/1"          "1|1"          "0/0"         
## HiC_scaffold_45_6958990   "0/1"          "1/1"          "0/1"         
## HiC_scaffold_45_8516216   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_45_10191213  NA             "1/1"          "1/1"         
## HiC_scaffold_45_12005885  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_45_12006766  NA             "0/1"          "0/1"         
## HiC_scaffold_45_24736172  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_45_24739830  "1|1"          "0/1"          "0/0"         
## HiC_scaffold_46_9691567   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_46_17380257  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_46_18387147  NA             "0/0"          "0/0"         
## HiC_scaffold_46_37092355  "1/1"          "0/1"          "1|1"         
## HiC_scaffold_46_39183624  NA             "1|1"          "1/1"         
## HiC_scaffold_46_39390547  NA             "1/1"          "1/1"         
## HiC_scaffold_46_42964941  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_46_42986653  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_46_52074364  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_46_54255667  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_47_3750532   "0/0"          "1|1"          "1/1"         
## HiC_scaffold_47_3751345   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_47_15400639  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_47_24072414  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_47_25273825  "0/0"          NA             "0/0"         
## HiC_scaffold_48_8752752   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_48_10765920  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_48_16077918  "0/0"          "0/1"          "1|1"         
## HiC_scaffold_48_16077940  "0/0"          "1/1"          "1|1"         
## HiC_scaffold_48_16411609  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_48_19972580  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_48_23493079  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_48_23597210  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_48_24478493  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_48_24881148  NA             "0/0"          NA            
## HiC_scaffold_48_25865723  "0/1"          NA             NA            
## HiC_scaffold_48_25984068  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_48_25989079  "0|1"          "1/1"          "0/1"         
## HiC_scaffold_48_30601375  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_48_31662115  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_48_41971562  "0/0"          NA             "0/1"         
## HiC_scaffold_49_3392801   "1|1"          NA             "0|1"         
## HiC_scaffold_49_6101692   NA             "1/1"          "0/1"         
## HiC_scaffold_49_7996315   "0/0"          "1/1"          "0/1"         
## HiC_scaffold_49_9470474   "1/1"          "0|0"          "0/0"         
## HiC_scaffold_49_9886007   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_49_12592113  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_49_12741575  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_49_15135019  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_49_25906219  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_49_26614199  "1/1"          NA             "0/1"         
## HiC_scaffold_49_26655554  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_49_37568341  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_49_37568353  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_49_40002255  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_49_40003229  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_49_42966376  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_5_801252     "0/1"          "1/1"          "0/1"         
## HiC_scaffold_5_1446603    "0|1"          "1|1"          "1|1"         
## HiC_scaffold_5_1446611    "0|1"          "1|1"          "1|1"         
## HiC_scaffold_5_1530759    "1/1"          "0/1"          NA            
## HiC_scaffold_5_1539275    "0/0"          "0/0"          "1|1"         
## HiC_scaffold_5_1789576    "0/0"          "1|1"          "1|1"         
## HiC_scaffold_5_1808197    "0/0"          "1/1"          "0/0"         
## HiC_scaffold_5_1808204    "1/1"          "0/0"          NA            
## HiC_scaffold_5_1943895    "1|1"          "0/1"          "1|1"         
## HiC_scaffold_5_1944469    "1/1"          "0/0"          "1/1"         
## HiC_scaffold_5_2857283    NA             NA             "0/0"         
## HiC_scaffold_5_4061378    "0/0"          "0|1"          "1/1"         
## HiC_scaffold_5_4340647    "1|1"          "0/0"          "1|1"         
## HiC_scaffold_5_4435246    "1/1"          "0/1"          "1/1"         
## HiC_scaffold_5_8868783    NA             "0/0"          "0/0"         
## HiC_scaffold_50_4315969   NA             "0/1"          "0/1"         
## HiC_scaffold_50_11652296  NA             "1/1"          "1/1"         
## HiC_scaffold_50_11657309  NA             NA             "1/1"         
## HiC_scaffold_50_15521027  "0/1"          "0|1"          "0/0"         
## HiC_scaffold_50_21050962  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_50_23686202  NA             "1|1"          "1|1"         
## HiC_scaffold_50_27393462  NA             "1|1"          "1|1"         
## HiC_scaffold_50_42586883  NA             "0/0"          "0/1"         
## HiC_scaffold_50_45087211  "0/0"          NA             "0/0"         
## HiC_scaffold_50_49796550  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_50_54383367  "0/1"          "0/0"          "0|1"         
## HiC_scaffold_50_63318678  "1/1"          "1/1"          NA            
## HiC_scaffold_51_3521000   "1/1"          "0/0"          NA            
## HiC_scaffold_51_4681905   "0/1"          "1/1"          "1/1"         
## HiC_scaffold_51_6305599   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_51_8530818   "1|1"          "0/0"          "0|1"         
## HiC_scaffold_51_11653312  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_51_13138547  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_51_14457091  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_51_15512668  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_51_17816346  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_51_19997934  "1|1"          NA             "1|1"         
## HiC_scaffold_51_19997936  "1|1"          NA             "1|1"         
## HiC_scaffold_51_20870773  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_51_26660104  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_51_40727521  "0/0"          "1|1"          NA            
## HiC_scaffold_51_40892841  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_51_41717519  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_51_42547638  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_52_3335804   "0/1"          "1/1"          "1/1"         
## HiC_scaffold_52_4149130   "0/1"          "0/0"          "1/1"         
## HiC_scaffold_52_6893679   "1|1"          "1|1"          NA            
## HiC_scaffold_52_13155416  "1/1"          "0|1"          "0/1"         
## HiC_scaffold_52_13155437  "1|1"          "0|1"          "1|1"         
## HiC_scaffold_52_13155442  "1|1"          "0|1"          "1|1"         
## HiC_scaffold_52_14885688  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_52_14895078  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_52_15141791  "0/0"          "1/1"          NA            
## HiC_scaffold_52_15743051  NA             "0|1"          "0/0"         
## HiC_scaffold_52_15760201  NA             "0/1"          NA            
## HiC_scaffold_52_15834589  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_52_15841769  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_52_15862421  "0/0"          "1|1"          "0|1"         
## HiC_scaffold_52_15970970  "1/1"          NA             "1/1"         
## HiC_scaffold_52_16275237  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_52_16275240  "0/0"          NA             "1|1"         
## HiC_scaffold_52_16275290  NA             "0/0"          "0/1"         
## HiC_scaffold_52_16524164  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_52_16524572  "0/1"          NA             "1/1"         
## HiC_scaffold_52_16525647  NA             NA             "0/0"         
## HiC_scaffold_52_16637047  "0/1"          "0/1"          "0/0"         
## HiC_scaffold_52_17202127  "0/0"          NA             "0/0"         
## HiC_scaffold_52_17207724  "0/1"          NA             "1/1"         
## HiC_scaffold_52_17508820  NA             "1|1"          "1|1"         
## HiC_scaffold_52_17547593  "1/1"          "0/1"          "0/1"         
## HiC_scaffold_52_17551239  "1|1"          "0/1"          "0|1"         
## HiC_scaffold_52_17560696  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_52_17560699  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_52_17741250  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_52_17742260  "0/0"          NA             "1|1"         
## HiC_scaffold_52_18340578  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_52_18415911  "0/0"          NA             "0/0"         
## HiC_scaffold_52_22189517  "1/1"          NA             "0/0"         
## HiC_scaffold_52_22526592  "0/1"          "0/1"          "0/1"         
## HiC_scaffold_52_26393471  "1/1"          NA             "0/0"         
## HiC_scaffold_52_26799380  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_52_31871931  "1|1"          "0/0"          "1/1"         
## HiC_scaffold_52_31874283  NA             "1/1"          "0/1"         
## HiC_scaffold_52_31874287  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_52_32161053  "0|1"          "1|1"          "1|1"         
## HiC_scaffold_52_33165557  "1/1"          NA             NA            
## HiC_scaffold_52_33897620  "0/0"          NA             "1/1"         
## HiC_scaffold_52_34763156  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_52_34763171  "0/1"          "0/0"          "0|1"         
## HiC_scaffold_52_35174755  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_52_35608453  "0/0"          NA             "0/0"         
## HiC_scaffold_52_35608470  "0/0"          NA             "0/0"         
## HiC_scaffold_52_39464728  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_52_42141354  "0/1"          "0/1"          "1|1"         
## HiC_scaffold_52_44675725  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_52_49935920  NA             NA             "0/1"         
## HiC_scaffold_53_21789524  "0/0"          "0/0"          NA            
## HiC_scaffold_53_25168042  NA             "0/0"          "0/1"         
## HiC_scaffold_53_26398989  "0/0"          "0|1"          "0/0"         
## HiC_scaffold_53_26398992  "0/0"          "0|1"          "0/0"         
## HiC_scaffold_53_26398994  "0/0"          "0|1"          "0/0"         
## HiC_scaffold_53_26549665  "0/0"          "0|1"          NA            
## HiC_scaffold_53_29227676  "0|1"          "0|1"          "1|1"         
## HiC_scaffold_53_31250349  "0/1"          "1/1"          NA            
## HiC_scaffold_54_530581    NA             "1|1"          "1|1"         
## HiC_scaffold_54_794095    NA             "1|1"          "0/0"         
## HiC_scaffold_54_1171109   "0/0"          "0/0"          NA            
## HiC_scaffold_54_1378956   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_54_1380539   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_54_3045015   NA             "0/0"          "1/1"         
## HiC_scaffold_54_3185987   "0/0"          "0/1"          "1/1"         
## HiC_scaffold_54_4401098   "1|1"          "0/0"          NA            
## HiC_scaffold_54_5595903   "0/1"          "0/1"          "0/1"         
## HiC_scaffold_54_5595921   "0/1"          "0/0"          "0|1"         
## HiC_scaffold_54_5595928   "0|1"          "0|1"          "0|1"         
## HiC_scaffold_54_5595949   "0/1"          "0/1"          "0/0"         
## HiC_scaffold_54_6649662   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_54_8036734   "0/1"          "0|1"          "0|1"         
## HiC_scaffold_54_9206614   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_54_35913192  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_54_35913282  "1|1"          "0|1"          NA            
## HiC_scaffold_54_35913283  "1|1"          "0|1"          NA            
## HiC_scaffold_55_1260491   "1/1"          "1/1"          "0/1"         
## HiC_scaffold_55_3254027   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_55_3281985   "1/1"          "1|1"          "0|1"         
## HiC_scaffold_55_5409544   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_55_5411094   "0|1"          "1|1"          "1|1"         
## HiC_scaffold_55_5411115   "0|1"          "1|1"          "1/1"         
## HiC_scaffold_55_18121799  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_55_19605809  NA             "1/1"          "0|1"         
## HiC_scaffold_55_19605817  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_55_19605821  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_55_20195204  "0/1"          "0/1"          "0/0"         
## HiC_scaffold_55_20886967  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_55_23222937  "0/1"          "0/1"          "0/0"         
## HiC_scaffold_55_23626331  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_55_24539590  "0/0"          NA             "0/0"         
## HiC_scaffold_55_24585939  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_55_34174151  "0/0"          NA             "1/1"         
## HiC_scaffold_56_17874332  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_56_18635259  "0/0"          "0|1"          "1|1"         
## HiC_scaffold_56_23654344  NA             NA             NA            
## HiC_scaffold_56_35850533  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_56_35850539  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_56_40813556  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_56_53211633  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_56_60070829  NA             "1/1"          "1/1"         
## HiC_scaffold_56_73286017  "0/1"          "1/1"          "0/1"         
## HiC_scaffold_56_73829442  "0/0"          NA             "0/0"         
## HiC_scaffold_56_73829443  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_56_76060304  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_57_25306408  "1/1"          "0/0"          NA            
## HiC_scaffold_57_29222385  "1|1"          "0|1"          "0|1"         
## HiC_scaffold_57_29592432  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_57_31472698  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_57_32371742  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_57_36495072  NA             "1/1"          NA            
## HiC_scaffold_57_37286264  "1/1"          "0|1"          "1/1"         
## HiC_scaffold_57_38537415  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_57_45438854  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_57_52856874  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_57_53575355  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_57_55856783  "1/1"          NA             NA            
## HiC_scaffold_58_1362614   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_58_1432845   NA             "1/1"          "0/1"         
## HiC_scaffold_58_1541720   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_58_2777120   "0/0"          NA             "1/1"         
## HiC_scaffold_58_2973169   "0/1"          "0/0"          "1/1"         
## HiC_scaffold_58_3243043   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_58_4035282   "1/1"          "0/1"          "0/0"         
## HiC_scaffold_58_5442157   "0/1"          "1|1"          "0/1"         
## HiC_scaffold_58_8004631   "0/1"          "0/1"          "0/0"         
## HiC_scaffold_58_8058998   "0/0"          "0/1"          NA            
## HiC_scaffold_58_8932837   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_58_14814944  "0/0"          NA             "0/0"         
## HiC_scaffold_58_15639988  NA             "0/0"          NA            
## HiC_scaffold_58_15707198  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_58_15707258  "1/1"          NA             "1/1"         
## HiC_scaffold_58_15710623  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_58_19155063  "0/0"          "1|1"          "0/1"         
## HiC_scaffold_58_20224050  "0/1"          "0/1"          NA            
## HiC_scaffold_58_38475355  "1/1"          NA             "0/0"         
## HiC_scaffold_59_3979055   NA             "1/1"          NA            
## HiC_scaffold_59_5071810   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_59_5349936   "0/0"          "1/1"          NA            
## HiC_scaffold_59_5350114   "1/1"          "1/1"          "0/1"         
## HiC_scaffold_59_7738302   "0/0"          "0/1"          "0/1"         
## HiC_scaffold_59_7738351   "0/0"          "0/1"          "0/1"         
## HiC_scaffold_59_7958561   "0/1"          "1|1"          "0/0"         
## HiC_scaffold_59_9273798   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_59_50928099  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_59_52960060  "0/0"          "1|1"          NA            
## HiC_scaffold_6_10569023   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_6_10711445   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_6_13209200   "1|1"          "1|1"          NA            
## HiC_scaffold_6_13213107   "1|1"          NA             "0/1"         
## HiC_scaffold_6_13311684   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_6_15670783   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_6_19111232   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_6_32805498   "1/1"          "1/1"          NA            
## HiC_scaffold_6_38793174   "0/1"          "0/0"          "1|1"         
## HiC_scaffold_6_41092101   "0/0"          NA             "0/0"         
## HiC_scaffold_6_41342933   "0/1"          "1/1"          "1/1"         
## HiC_scaffold_6_47594508   "0/0"          "0/1"          "1/1"         
## HiC_scaffold_60_70878     "1|1"          "0|1"          "0|1"         
## HiC_scaffold_60_99549     "1|1"          "0/1"          "0/0"         
## HiC_scaffold_60_201823    "0/0"          NA             "0/1"         
## HiC_scaffold_60_712969    "0/1"          NA             "1|1"         
## HiC_scaffold_60_744783    "0/0"          "0/1"          "0/0"         
## HiC_scaffold_60_744788    "0/0"          "1/1"          "1/1"         
## HiC_scaffold_60_22142128  NA             "0/1"          "0/1"         
## HiC_scaffold_60_27599770  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_60_30608878  "0|1"          "1|1"          "1|1"         
## HiC_scaffold_60_32657324  "0/1"          NA             "1/1"         
## HiC_scaffold_60_32672580  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_60_38856893  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_60_39028335  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_60_40296869  "1/1"          "0/1"          NA            
## HiC_scaffold_60_42775723  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_60_44687906  "0/1"          NA             "0/1"         
## HiC_scaffold_60_44804601  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_60_53696867  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_60_53696868  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_60_60651515  "1|1"          "0/0"          "0|1"         
## HiC_scaffold_60_70678462  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_61_2205328   NA             "1/1"          "1/1"         
## HiC_scaffold_61_2491706   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_61_4009916   "2/2"          "0/2"          "0/0"         
## HiC_scaffold_61_4062917   NA             "0/0"          "0/0"         
## HiC_scaffold_61_4122763   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_61_4216461   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_61_4325053   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_61_9004838   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_61_14635083  "0/0"          "0|1"          NA            
## HiC_scaffold_62_1128608   "1/1"          NA             "1/1"         
## HiC_scaffold_62_11335200  "0/0"          "0|0"          "0/2"         
## HiC_scaffold_62_18828476  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_62_21548870  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_62_23103274  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_62_25793456  NA             "1/1"          "1/1"         
## HiC_scaffold_62_25887474  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_62_28516096  "0/0"          "0|1"          "1|1"         
## HiC_scaffold_62_28516099  "0/0"          "0|1"          "1|1"         
## HiC_scaffold_62_28818725  "1|1"          NA             NA            
## HiC_scaffold_62_28818729  "0/0"          NA             NA            
## HiC_scaffold_62_45207353  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_63_3092269   "1/1"          NA             "1/1"         
## HiC_scaffold_63_3977940   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_63_4084937   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_63_4196326   "0/1"          "0|1"          "0|1"         
## HiC_scaffold_63_6262453   "0/0"          NA             "0/0"         
## HiC_scaffold_63_6350204   "1/1"          "1/1"          "0/1"         
## HiC_scaffold_63_6458794   "0|1"          "0/0"          "0/0"         
## HiC_scaffold_64_9162978   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_64_16876561  "0|1"          "1|1"          "0/0"         
## HiC_scaffold_64_17543009  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_64_18925356  "0/0"          "0/1"          NA            
## HiC_scaffold_64_19133050  NA             "0/0"          "1/1"         
## HiC_scaffold_64_19627769  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_64_20477250  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_64_22816677  "1/1"          NA             "0/0"         
## HiC_scaffold_64_22954654  NA             "1|1"          "1|1"         
## HiC_scaffold_64_22954658  NA             "1|1"          "1|1"         
## HiC_scaffold_64_22954682  NA             "1/1"          "1/1"         
## HiC_scaffold_65_6829971   "1/1"          NA             "1/1"         
## HiC_scaffold_65_8071102   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_65_9023979   "0/0"          "1/1"          "0/1"         
## HiC_scaffold_65_9839671   "0/1"          "1|1"          "1/1"         
## HiC_scaffold_65_10404778  "1|1"          "0/0"          "0|1"         
## HiC_scaffold_65_11327791  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_65_11332104  "0/1"          "0/1"          "1/1"         
## HiC_scaffold_65_34823822  NA             "0/0"          "1/1"         
## HiC_scaffold_65_51418017  NA             "1/1"          "1/1"         
## HiC_scaffold_65_54053979  NA             "0/1"          "1|1"         
## HiC_scaffold_65_57110875  "1/1"          "0/0"          "1|1"         
## HiC_scaffold_66_15615363  "0/0"          NA             "0/1"         
## HiC_scaffold_66_15672090  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_66_17903445  "0/0"          "0|1"          "0/0"         
## HiC_scaffold_66_18298629  "0|1"          "0/0"          "1|1"         
## HiC_scaffold_66_19730676  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_66_23688768  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_66_26614535  "0/0"          "0/1"          "0|2"         
## HiC_scaffold_66_27445665  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_66_29457165  "1|1"          "1/1"          "1|1"         
## HiC_scaffold_66_29457180  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_66_30116287  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_66_31603503  "0/0"          NA             "0/0"         
## HiC_scaffold_66_33261460  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_66_34138981  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_66_34139020  "1|1"          "1/1"          "0/0"         
## HiC_scaffold_66_34142862  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_67_1404390   "0/0"          NA             "1|1"         
## HiC_scaffold_67_28493665  NA             "0/0"          "1/1"         
## HiC_scaffold_67_30243885  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_67_31511806  NA             "0|1"          "0/0"         
## HiC_scaffold_67_34638092  "0/1"          "0/0"          NA            
## HiC_scaffold_67_37534720  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_67_39679546  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_67_39854918  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_67_39860738  NA             NA             "0/0"         
## HiC_scaffold_67_40331656  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_67_40824747  NA             "1|1"          "1|1"         
## HiC_scaffold_68_3438132   "1|1"          "1|1"          "0|1"         
## HiC_scaffold_68_3438133   "1|1"          "1|1"          "0|1"         
## HiC_scaffold_68_11206902  "1/1"          NA             "0/1"         
## HiC_scaffold_68_32770607  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_68_34016823  "0/0"          "1/2"          "1/2"         
## HiC_scaffold_68_34020019  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_68_40296057  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_68_40296059  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_68_65001879  "1/1"          "1/1"          NA            
## HiC_scaffold_69_23311147  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_69_27351303  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_69_29437208  "0/0"          NA             "1|1"         
## HiC_scaffold_69_33699381  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_69_40194698  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_69_48273575  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_69_48348026  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_69_48348034  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_69_49563252  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_69_49593952  NA             "1/1"          "1/1"         
## HiC_scaffold_69_49859037  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_69_51271238  NA             "0/1"          "0/0"         
## HiC_scaffold_69_51529836  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_69_57313650  NA             NA             "1|1"         
## HiC_scaffold_69_57359194  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_6951_523650  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_6951_897126  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_6951_1134482 "0/1"          "1|1"          "0/1"         
## HiC_scaffold_6951_2484960 "1/1"          "1/1"          "0/0"         
## HiC_scaffold_6951_3301273 "0/0"          NA             "0/1"         
## HiC_scaffold_6951_3314609 "0/1"          "0/0"          "0/1"         
## HiC_scaffold_6951_3945993 "0/0"          "0/0"          "0/0"         
## HiC_scaffold_6958_218293  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_6958_449143  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_7_351023     NA             NA             "0/1"         
## HiC_scaffold_7_488024     NA             "0|1"          "0/0"         
## HiC_scaffold_7_492663     "0/0"          "1/1"          "1/1"         
## HiC_scaffold_7_693567     "0|1"          "0/0"          "1|1"         
## HiC_scaffold_7_2379128    NA             NA             "0/0"         
## HiC_scaffold_7_3087721    "0/1"          "0/1"          "0/1"         
## HiC_scaffold_7_3394880    "1/1"          "0/0"          "1/1"         
## HiC_scaffold_7_22247106   NA             "0/0"          "1|1"         
## HiC_scaffold_70_4632611   NA             "0/0"          "0/0"         
## HiC_scaffold_70_14042778  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_71_410844    "0/0"          NA             "0|1"         
## HiC_scaffold_71_1753451   "0/0"          "0/1"          "0/0"         
## HiC_scaffold_71_2283682   "0|1"          "0/0"          "1|1"         
## HiC_scaffold_71_3439685   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_71_17850462  "1|1"          "1/1"          "0/0"         
## HiC_scaffold_71_20588314  "1|1"          "0/1"          "1|1"         
## HiC_scaffold_71_25465351  "1|1"          "0|1"          "0/0"         
## HiC_scaffold_71_25465352  "1|1"          "0|1"          "0/0"         
## HiC_scaffold_71_26356062  "1/1"          NA             "0/0"         
## HiC_scaffold_72_11785096  "1/1"          "1/1"          NA            
## HiC_scaffold_72_17285854  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_72_23704999  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_72_24465318  "0|0"          "0/0"          "0/1"         
## HiC_scaffold_72_30457277  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_72_32068649  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_72_35058295  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_72_36024997  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_72_37135067  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_72_38410141  NA             "0/0"          "1/1"         
## HiC_scaffold_72_38448056  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_72_41412511  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_73_2192629   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_73_2920208   NA             "0/1"          "0/0"         
## HiC_scaffold_73_4522493   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_73_4748625   "1/1"          "0/0"          "1|1"         
## HiC_scaffold_73_5839336   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_73_9338582   NA             "1/1"          "0/1"         
## HiC_scaffold_73_27393859  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_74_14235619  NA             NA             "0/0"         
## HiC_scaffold_74_14515598  NA             "1/1"          "1/1"         
## HiC_scaffold_74_15116121  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_74_17233613  "0|1"          "1/1"          "1/1"         
## HiC_scaffold_74_17725340  "0|1"          "1|1"          "1/1"         
## HiC_scaffold_74_18418135  NA             "1|1"          "1|1"         
## HiC_scaffold_74_18418138  NA             "1|1"          "1|1"         
## HiC_scaffold_74_21254425  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_74_22261065  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_74_47132519  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_74_50979096  "1/1"          NA             "1/1"         
## HiC_scaffold_74_51060549  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_74_53256803  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_74_55464169  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_74_55515512  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_74_55999260  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_74_57404902  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_74_58181927  "1|1"          NA             "0/0"         
## HiC_scaffold_74_58198600  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_74_63060195  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_75_5345466   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_75_5346522   "0/0"          "1/1"          "0/1"         
## HiC_scaffold_75_5346535   "0/0"          "1/1"          "0/1"         
## HiC_scaffold_75_9850973   NA             "1/1"          "1/1"         
## HiC_scaffold_76_27149820  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_76_31582908  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_76_31792815  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_76_35352820  "0|1"          "1|1"          "0/0"         
## HiC_scaffold_76_57782171  "0/1"          "0/1"          "0/1"         
## HiC_scaffold_76_59862401  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_76_61095594  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_76_65496128  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_76_68965847  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_76_68966411  NA             "1/1"          "1/1"         
## HiC_scaffold_76_69823482  "1/1"          "0/0"          "0|1"         
## HiC_scaffold_76_73343841  NA             "1/1"          "1/1"         
## HiC_scaffold_77_3598274   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_77_6982137   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_77_11021994  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_77_13608165  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_77_16888594  "1|1"          "0/1"          "0/0"         
## HiC_scaffold_77_16888623  "0/0"          "0/1"          NA            
## HiC_scaffold_77_16889448  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_77_39784685  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_77_44375866  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_77_45385370  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_78_5719919   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_78_11353297  "0/0"          NA             "1/1"         
## HiC_scaffold_78_27316392  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_78_48124809  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_78_48124826  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_78_48126176  NA             "1/1"          "0/1"         
## HiC_scaffold_78_48279096  "0/1"          "0/1"          "1/1"         
## HiC_scaffold_78_48434558  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_78_49759181  "0|1"          NA             "0/1"         
## HiC_scaffold_78_49759192  "1|1"          NA             "0|1"         
## HiC_scaffold_78_49759215  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_78_51364025  NA             NA             "0/1"         
## HiC_scaffold_78_55395445  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_78_59610866  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_78_62136661  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_79_1643780   NA             "1/1"          "1/1"         
## HiC_scaffold_79_2519178   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_79_2858100   NA             "0/0"          "1/1"         
## HiC_scaffold_79_3922454   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_79_4127878   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_79_4543693   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_79_11507678  "0/0"          "1/1"          NA            
## HiC_scaffold_79_12618812  "1/1"          NA             "0/1"         
## HiC_scaffold_79_14185404  "1|1"          "0/0"          "0/1"         
## HiC_scaffold_79_17120237  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_79_17120254  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_79_35551507  "1|1"          "0|1"          "0/1"         
## HiC_scaffold_79_35551543  "1/1"          NA             "0/1"         
## HiC_scaffold_79_38927423  NA             "1|1"          "0/0"         
## HiC_scaffold_79_42623307  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_79_43179786  "0/0"          "1|1"          "0/1"         
## HiC_scaffold_79_43180099  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_79_43828078  "0|1"          NA             "1|1"         
## HiC_scaffold_79_43872513  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_79_44627215  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_79_50772769  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_79_55468575  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_79_55816114  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_79_59915784  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_79_60165298  "0|1"          "1|1"          "0/1"         
## HiC_scaffold_79_60165305  "0|1"          "1|1"          "0|1"         
## HiC_scaffold_79_69145556  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_79_70208305  "0|1"          "0|1"          "1|1"         
## HiC_scaffold_79_73412292  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_79_73416663  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_79_73416688  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_79_76863102  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_79_81279649  "0/0"          "0|1"          "0|1"         
## HiC_scaffold_79_81499990  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_79_82319836  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_79_82319849  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_79_83163707  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_79_86283512  NA             "0/0"          "1/1"         
## HiC_scaffold_79_87123758  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_79_88362889  "0/1"          "0/0"          NA            
## HiC_scaffold_79_88599431  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_79_89322919  NA             "0/1"          "1/1"         
## HiC_scaffold_79_89331918  NA             "0/0"          "1|1"         
## HiC_scaffold_79_91340958  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_8_13649836   "0/1"          "1|1"          "1/1"         
## HiC_scaffold_8_13650752   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_8_23818233   NA             "0/1"          "0/1"         
## HiC_scaffold_8_24123972   NA             "1|1"          "0/0"         
## HiC_scaffold_8_24230791   NA             "1|1"          "0/1"         
## HiC_scaffold_8_24588423   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_8_25348483   "0/1"          "1/1"          "0/0"         
## HiC_scaffold_8_25421933   "1|1"          NA             "0/0"         
## HiC_scaffold_8_25772942   "0/0"          NA             "0/0"         
## HiC_scaffold_8_26289589   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_8_27602740   "0/0"          "0/1"          "0/1"         
## HiC_scaffold_8_28159063   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_8_30829320   "0/0"          NA             "0|1"         
## HiC_scaffold_8_31044084   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_8_31415507   "0|2"          "1|1"          "0/0"         
## HiC_scaffold_8_32594682   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_80_3617847   "0/1"          "1/1"          "1/1"         
## HiC_scaffold_80_5758183   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_80_6760006   "0|1"          "0/0"          "1|1"         
## HiC_scaffold_80_6760037   "0/1"          "0/0"          "1/1"         
## HiC_scaffold_80_7772622   NA             "1/1"          "0/1"         
## HiC_scaffold_80_7919533   "0/0"          "1/1"          "0/1"         
## HiC_scaffold_80_8110052   NA             "1|1"          "0/1"         
## HiC_scaffold_80_8193366   NA             NA             "1/1"         
## HiC_scaffold_80_8625784   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_80_8912846   "0/0"          "1/1"          "1/1"         
## HiC_scaffold_80_9544102   "0/0"          NA             "0/0"         
## HiC_scaffold_80_10770701  NA             "0/0"          "0/0"         
## HiC_scaffold_80_11590146  NA             NA             "0/0"         
## HiC_scaffold_80_16953653  "0/0"          NA             "0/0"         
## HiC_scaffold_80_18938832  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_80_19015946  "1/1"          "1/1"          NA            
## HiC_scaffold_80_19404001  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_80_25346708  "1|1"          "0/1"          "0/0"         
## HiC_scaffold_80_37479851  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_80_37507516  "1/1"          NA             "0/1"         
## HiC_scaffold_81_1187192   NA             "0/1"          "1/1"         
## HiC_scaffold_81_2689826   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_81_2690751   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_81_6614123   "0/1"          NA             "0/1"         
## HiC_scaffold_81_7836855   "0/1"          "0|1"          "1/1"         
## HiC_scaffold_81_10334868  "1/1"          "1|1"          "1|1"         
## HiC_scaffold_81_10458752  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_81_17515538  "1|1"          "1/1"          "0/1"         
## HiC_scaffold_81_40271282  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_81_40271294  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_81_41096427  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_81_41096444  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_81_43820595  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_81_43820732  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_81_43854278  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_81_44804862  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_81_45063428  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_81_45950590  "1/1"          "0/0"          NA            
## HiC_scaffold_81_46714752  "1|1"          NA             "0|1"         
## HiC_scaffold_81_46714759  "1|1"          "0/0"          "0|1"         
## HiC_scaffold_81_47170397  NA             "1|1"          "0/0"         
## HiC_scaffold_81_47628201  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_81_48105216  "0/1"          "1|1"          "1|1"         
## HiC_scaffold_81_48932070  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_81_54050146  NA             "1/1"          "1/1"         
## HiC_scaffold_82_5672063   "1/1"          NA             "1/1"         
## HiC_scaffold_82_8796823   "0/1"          "1|1"          NA            
## HiC_scaffold_82_13450959  NA             "0/1"          "0/0"         
## HiC_scaffold_82_26144442  "1/1"          "0/0"          NA            
## HiC_scaffold_82_26147011  "1|1"          "1|1"          "0/1"         
## HiC_scaffold_82_28907834  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_82_34413793  "0/1"          "1|1"          "0/1"         
## HiC_scaffold_82_34413800  "0/1"          "1|1"          "0/1"         
## HiC_scaffold_82_36173035  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_82_40539273  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_82_41470256  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_83_23993605  "1/1"          NA             "0/1"         
## HiC_scaffold_83_35035961  "0|1"          "0|1"          "0/1"         
## HiC_scaffold_83_43423618  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_83_46920654  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_83_46934197  "1|1"          "1/1"          "1|1"         
## HiC_scaffold_84_356301    "0/0"          "0/0"          "1|1"         
## HiC_scaffold_84_5761817   "1/1"          "0/0"          "0/1"         
## HiC_scaffold_84_5769022   "0/0"          NA             "0/0"         
## HiC_scaffold_84_6288130   "1|1"          "0/0"          "0/1"         
## HiC_scaffold_84_6288141   "1|1"          NA             "1/1"         
## HiC_scaffold_84_6288147   NA             NA             "0/0"         
## HiC_scaffold_84_7069238   "1|1"          "0/0"          "1|1"         
## HiC_scaffold_84_9131309   "1/1"          NA             "0/0"         
## HiC_scaffold_84_10148442  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_84_14659391  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_84_16302752  "1/1"          "1/1"          "2|2"         
## HiC_scaffold_84_18463244  "1/1"          "1/1"          NA            
## HiC_scaffold_84_22909575  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_84_29275266  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_84_31184610  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_84_33093169  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_84_37675180  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_84_39501814  "0/1"          "1|1"          "0/0"         
## HiC_scaffold_84_50169438  "0/0"          "1/1"          NA            
## HiC_scaffold_84_50169445  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_84_51231025  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_85_9792207   NA             NA             "0|1"         
## HiC_scaffold_85_11784233  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_85_11911022  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_85_11911142  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_85_11913828  NA             "1/1"          "0|1"         
## HiC_scaffold_85_11913831  NA             "0/0"          NA            
## HiC_scaffold_85_12353081  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_85_12414551  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_85_13043967  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_85_13221888  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_85_27008863  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_85_28992264  "0/1"          "0|1"          "0|1"         
## HiC_scaffold_85_28992268  "1/1"          "1|1"          "0|1"         
## HiC_scaffold_85_64310850  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_85_65135112  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_85_65563529  NA             "0/1"          "1/1"         
## HiC_scaffold_86_1949664   "1|1"          "0/0"          "1|1"         
## HiC_scaffold_86_5340423   "0/1"          "0/0"          "0/1"         
## HiC_scaffold_86_5483991   "0/1"          "0/0"          "1|1"         
## HiC_scaffold_86_8928469   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_86_23727924  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_86_24825818  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_86_25333718  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_86_29668168  "0|1"          "0/0"          NA            
## HiC_scaffold_86_30914243  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_86_32040320  "0|1"          "0|1"          "0|1"         
## HiC_scaffold_86_32040329  "0|1"          "0|1"          "0|1"         
## HiC_scaffold_86_32125061  "0/0"          NA             "0/1"         
## HiC_scaffold_86_32144758  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_86_32153692  NA             "0/1"          NA            
## HiC_scaffold_86_32534129  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_86_32605768  "1|1"          "0/0"          NA            
## HiC_scaffold_86_36355399  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_86_36357265  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_87_1253643   NA             "0/0"          "0/1"         
## HiC_scaffold_87_2137958   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_87_3980100   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_87_4395923   NA             "0/0"          "0/0"         
## HiC_scaffold_87_5489328   "1|1"          NA             "1|1"         
## HiC_scaffold_87_6300441   "0/1"          "1/1"          "0/1"         
## HiC_scaffold_87_16306904  NA             "1/1"          "1/1"         
## HiC_scaffold_87_44780945  "0/0"          "1|1"          NA            
## HiC_scaffold_88_5584327   "0/1"          NA             "0|1"         
## HiC_scaffold_88_7104630   "0/0"          NA             "1|1"         
## HiC_scaffold_88_7104631   "0/0"          NA             "1|1"         
## HiC_scaffold_88_7104638   "1|1"          NA             "0/0"         
## HiC_scaffold_88_7104639   "0/1"          NA             "1|1"         
## HiC_scaffold_88_7104640   "1|1"          NA             "1|1"         
## HiC_scaffold_88_7479340   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_88_8773607   NA             "1|1"          "1|1"         
## HiC_scaffold_88_9883678   "1|1"          "0/0"          "1|1"         
## HiC_scaffold_88_10878718  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_88_19365116  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_88_20477349  NA             NA             "0/0"         
## HiC_scaffold_88_20557885  "0/1"          "0/1"          "0/1"         
## HiC_scaffold_89_675045    "0/1"          "0/0"          "0/0"         
## HiC_scaffold_89_2815845   "0|2"          "0/2"          "0/0"         
## HiC_scaffold_89_2843940   "0/0"          "0/1"          "0/0"         
## HiC_scaffold_89_3018830   "1/1"          "1/1"          "0/1"         
## HiC_scaffold_89_13745506  NA             NA             "0/1"         
## HiC_scaffold_89_30006907  "1/1"          "0/1"          NA            
## HiC_scaffold_89_36509388  NA             NA             "0/0"         
## HiC_scaffold_89_38703735  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_89_38764895  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_89_42052609  NA             "0/0"          "1/1"         
## HiC_scaffold_89_42054991  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_89_44306958  "0/1"          "0/1"          NA            
## HiC_scaffold_89_44338206  "0/0"          NA             "1/1"         
## HiC_scaffold_89_45298973  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_9_3529921    "0/0"          "1/1"          "1/1"         
## HiC_scaffold_9_5660454    "1|1"          "1|1"          "0|1"         
## HiC_scaffold_9_5660461    "1|1"          "1|1"          "1|1"         
## HiC_scaffold_9_5854070    "0/1"          "1/1"          "1/1"         
## HiC_scaffold_9_6142415    "0|1"          "0|1"          "0/0"         
## HiC_scaffold_9_6142436    "0|1"          "0|1"          "0/0"         
## HiC_scaffold_9_6143781    "0/1"          "0/1"          "0/0"         
## HiC_scaffold_9_6654825    "1/1"          NA             "0/0"         
## HiC_scaffold_9_7094545    "1/1"          "1|1"          "1|1"         
## HiC_scaffold_9_7100208    "1|1"          "1|1"          "0/0"         
## HiC_scaffold_9_7109988    "0/0"          "0/0"          "1/1"         
## HiC_scaffold_9_7111922    "0/0"          "0/0"          "1|1"         
## HiC_scaffold_9_8235781    "0/1"          "1/1"          NA            
## HiC_scaffold_9_8279558    "1/1"          "0/0"          "1/1"         
## HiC_scaffold_9_15679481   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_9_18082611   "0/0"          "1|1"          "0|1"         
## HiC_scaffold_9_18090830   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_9_30240531   "0/0"          "1/1"          "1/1"         
## HiC_scaffold_90_10418696  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_90_11470224  "0/0"          NA             "1/1"         
## HiC_scaffold_90_13593319  "0/0"          "1/1"          NA            
## HiC_scaffold_90_16260161  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_90_22325499  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_90_23574204  "0/0"          NA             "0/0"         
## HiC_scaffold_90_23609908  "1|1"          "0/0"          "0/1"         
## HiC_scaffold_90_23623078  "1|1"          NA             "1|1"         
## HiC_scaffold_90_23626883  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_90_23812663  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_90_25939283  "1/1"          "0/0"          NA            
## HiC_scaffold_90_25985714  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_90_30751272  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_90_31232025  NA             NA             NA            
## HiC_scaffold_90_31245699  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_90_31527975  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_90_31546172  "0/1"          "1|1"          "0/1"         
## HiC_scaffold_90_38511996  "0|1"          "0/0"          "0|1"         
## HiC_scaffold_90_38511999  "1|1"          "1|1"          "0|1"         
## HiC_scaffold_90_38517279  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_90_40624104  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_91_5644765   "0/0"          "0/0"          NA            
## HiC_scaffold_91_5867214   "0/0"          "1|1"          "0|1"         
## HiC_scaffold_91_5867226   "0/0"          "1|1"          "0|1"         
## HiC_scaffold_91_7704263   NA             NA             "0/0"         
## HiC_scaffold_91_7871360   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_91_8538014   "1/1"          "0/1"          NA            
## HiC_scaffold_91_13230485  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_91_28696118  "0/0"          NA             "0/0"         
## HiC_scaffold_91_28696625  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_91_42177482  "0/1"          "0/1"          NA            
## HiC_scaffold_91_46813640  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_92_23783035  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_92_23783036  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_92_24712793  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_92_28698258  "0/0"          "1/1"          "0|1"         
## HiC_scaffold_92_40691582  NA             "0/0"          "0/0"         
## HiC_scaffold_92_43967712  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_92_47147572  "0/0"          NA             "0|1"         
## HiC_scaffold_92_49042714  "0|1"          "1|1"          "1|1"         
## HiC_scaffold_92_49042715  "0|1"          "1|1"          "1|1"         
## HiC_scaffold_92_53634002  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_92_58211868  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_92_60114155  "0/0"          "0/1"          "1|1"         
## HiC_scaffold_92_63603483  "1|1"          "1/1"          "0/0"         
## HiC_scaffold_92_64797225  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_92_68367476  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_93_1912167   NA             "0/0"          "1/1"         
## HiC_scaffold_93_2485978   "1/1"          NA             "0/0"         
## HiC_scaffold_93_3227638   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_93_3227641   "0/0"          "0/0"          NA            
## HiC_scaffold_93_13971208  NA             "1/1"          "0/0"         
## HiC_scaffold_93_13987080  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_93_21125468  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_93_21845293  NA             "0/1"          NA            
## HiC_scaffold_93_21845310  NA             "0/0"          NA            
## HiC_scaffold_93_21846342  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_93_21846356  "0/1"          "0/0"          "1|1"         
## HiC_scaffold_93_22589723  "1/1"          NA             "0/0"         
## HiC_scaffold_93_22619278  "1/1"          NA             "0/0"         
## HiC_scaffold_93_22631258  "1|1"          "1|1"          "0|1"         
## HiC_scaffold_93_22631266  "1|1"          "1|1"          "0|1"         
## HiC_scaffold_94_3110102   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_94_3205919   "1/1"          "1/1"          "0/1"         
## HiC_scaffold_94_9023846   "0/1"          "0/0"          "0/1"         
## HiC_scaffold_94_11572820  NA             "1/1"          "0/0"         
## HiC_scaffold_94_12368532  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_94_42179418  "1/1"          "0/0"          NA            
## HiC_scaffold_94_42179519  "0/0"          "1/1"          NA            
## HiC_scaffold_94_51646206  NA             "0/1"          "0/0"         
## HiC_scaffold_94_52781289  NA             "0/1"          "1/1"         
## HiC_scaffold_94_53790035  "0/1"          "1/1"          "0/1"         
## HiC_scaffold_94_53792738  NA             "1/1"          "0/1"         
## HiC_scaffold_94_56768905  "1|1"          NA             "0|1"         
## HiC_scaffold_946_81276    "0/1"          "0/1"          "0/1"         
## HiC_scaffold_95_3189690   NA             "0/0"          "0/0"         
## HiC_scaffold_95_4397298   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_95_9469157   "0/0"          NA             "1|1"         
## HiC_scaffold_95_10641411  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_95_10949821  "1/1"          NA             "1/1"         
## HiC_scaffold_95_12993394  "0|1"          "1|1"          "1|1"         
## HiC_scaffold_95_15515793  NA             "0/0"          "0|1"         
## HiC_scaffold_95_15608785  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_95_15609137  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_95_16295316  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_95_22656165  "0|0"          "0/0"          "0/0"         
## HiC_scaffold_95_25885727  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_96_10460019  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_96_27155785  "0/1"          NA             "1/1"         
## HiC_scaffold_96_37939434  "0/0"          "0|1"          "1/1"         
## HiC_scaffold_96_51115048  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_96_51116511  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_96_51915040  "0/1"          "1|1"          "0/0"         
## HiC_scaffold_96_52681287  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_96_53276519  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_97_1736926   "0|1"          "0/0"          "1|1"         
## HiC_scaffold_97_1736994   "0/1"          "0/0"          "1|1"         
## HiC_scaffold_97_3863543   "1/1"          "1/1"          NA            
## HiC_scaffold_97_4200445   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_97_4799162   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_97_5027892   "1/1"          NA             "0/0"         
## HiC_scaffold_97_8007933   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_97_17997210  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_97_18604647  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_97_20239636  "1/1"          NA             "0/0"         
## HiC_scaffold_98_15154096  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_98_22342667  "1/1"          "0/1"          "0/1"         
## HiC_scaffold_98_22634293  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_98_22634294  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_98_22721138  "1/1"          NA             "1/1"         
## HiC_scaffold_98_22869378  "1/1"          NA             "0/1"         
## HiC_scaffold_98_24108405  "0/0"          "0|1"          "0/0"         
## HiC_scaffold_98_27359592  NA             NA             "1|1"         
## HiC_scaffold_98_28549834  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_98_28867520  NA             NA             "0|1"         
## HiC_scaffold_98_28867524  NA             NA             "0|1"         
## HiC_scaffold_98_29431717  "1|1"          "0|1"          NA            
## HiC_scaffold_98_29675109  "0/1"          NA             "0/0"         
## HiC_scaffold_99_1163244   "0/0"          NA             "0/0"         
## HiC_scaffold_99_1451611   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_99_2021961   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_99_5134392   "0/0"          "0/1"          "0/0"         
## HiC_scaffold_99_5239109   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_99_6917738   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_99_11221970  "1|1"          NA             "0|1"         
## HiC_scaffold_99_25982503  "1/1"          "0/1"          "0/1"         
##                           Tank_13_Crab_1 Tank_13_Crab_2 Tank_13_Crab_3
## HiC_scaffold_1_2523394    "0/0"          "0/1"          "0/1"         
## HiC_scaffold_1_2542157    "0/0"          "1/1"          "0/0"         
## HiC_scaffold_1_2647806    "0/0"          "1/1"          "1/1"         
## HiC_scaffold_1_2970226    NA             "1|1"          "0/0"         
## HiC_scaffold_1_3329447    "0/0"          "0/0"          NA            
## HiC_scaffold_1_3795100    "1|1"          "1|1"          "1|1"         
## HiC_scaffold_10_2221345   NA             "1/1"          "0|1"         
## HiC_scaffold_10_2299490   NA             NA             "0/0"         
## HiC_scaffold_10_2565301   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_10_3864355   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_10_4319900   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_10_4319907   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_10_5404579   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_10_5843373   "0/1"          "1/1"          "0/1"         
## HiC_scaffold_100_854947   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_100_1070817  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_100_2002094  "0|1"          "0|1"          "1|1"         
## HiC_scaffold_100_2002097  "0|1"          "0|1"          "1|1"         
## HiC_scaffold_100_2010331  "0/1"          "0/0"          "1|1"         
## HiC_scaffold_100_5186498  "1/1"          NA             "1/1"         
## HiC_scaffold_100_5828477  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_100_6470419  NA             "0/0"          "0|1"         
## HiC_scaffold_100_6739225  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_100_6739258  "0/0"          "0|1"          "1|1"         
## HiC_scaffold_100_6739264  "0/0"          "0|1"          "1|1"         
## HiC_scaffold_100_6907177  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_100_8384481  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_100_8384495  "1/1"          "1|1"          "1|1"         
## HiC_scaffold_100_9451470  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_100_10464574 "1/1"          NA             "0/1"         
## HiC_scaffold_100_11934792 "0/0"          "0/0"          "0/0"         
## HiC_scaffold_100_11980177 "1/1"          "1/1"          "1/1"         
## HiC_scaffold_100_18465760 "0/0"          "0|1"          "1|1"         
## HiC_scaffold_100_18465762 "0/0"          "0|1"          "1|1"         
## HiC_scaffold_100_18466205 "0/0"          "0/2"          "0/0"         
## HiC_scaffold_100_31738115 NA             "1/1"          "1/1"         
## HiC_scaffold_100_44227362 "0/0"          "0/0"          "0/0"         
## HiC_scaffold_101_12808961 "0/0"          "1|1"          "0/0"         
## HiC_scaffold_101_13897149 "1/1"          NA             NA            
## HiC_scaffold_101_18337279 "0/0"          "0/0"          "0/0"         
## HiC_scaffold_101_20800167 "1/1"          "1/1"          "0/0"         
## HiC_scaffold_102_2260041  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_102_8734519  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_102_10233999 "0/0"          "1|1"          "1|1"         
## HiC_scaffold_102_11446042 "1/1"          "0/0"          "1/1"         
## HiC_scaffold_102_15918694 "1|1"          "0/1"          "0/1"         
## HiC_scaffold_102_15935667 "0/0"          "0/0"          "0/0"         
## HiC_scaffold_102_17442643 "0/1"          "0/0"          "0/0"         
## HiC_scaffold_102_17608969 "0/0"          "0/0"          "1/1"         
## HiC_scaffold_102_20180185 "1/1"          NA             "0/1"         
## HiC_scaffold_102_24788723 "0/1"          "0|1"          "0/0"         
## HiC_scaffold_102_25423729 "1|1"          "1|1"          "1|1"         
## HiC_scaffold_102_39755142 "0/0"          "0/0"          "0/1"         
## HiC_scaffold_102_52046978 "1/1"          "0/0"          "0/0"         
## HiC_scaffold_1027_34152   "0|1"          NA             "1/1"         
## HiC_scaffold_103_601715   "1/1"          "0/1"          NA            
## HiC_scaffold_103_2891384  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_103_8191270  "1|1"          "0/2"          "0/0"         
## HiC_scaffold_103_9521272  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_103_14768909 "0|1"          "1|1"          "0/0"         
## HiC_scaffold_103_19312119 NA             "1|1"          "1|1"         
## HiC_scaffold_103_21284866 "0/0"          "0/0"          "1/1"         
## HiC_scaffold_103_31428453 "0/0"          "1|1"          "1|1"         
## HiC_scaffold_103_42567396 "1/1"          "0/1"          "1/1"         
## HiC_scaffold_103_45921571 "1|1"          "0|1"          "0|1"         
## HiC_scaffold_103_45921573 "1|1"          "0|1"          "0|1"         
## HiC_scaffold_103_49592022 "0/1"          "0/1"          "1|1"         
## HiC_scaffold_103_49620132 "0/0"          "0/1"          "1|1"         
## HiC_scaffold_103_50440915 "0/0"          "1|1"          "0/0"         
## HiC_scaffold_103_51944137 "1/1"          "1/1"          "1/1"         
## HiC_scaffold_103_54308582 "0/0"          "0/0"          "0/0"         
## HiC_scaffold_103_54424067 "0/0"          "0/0"          NA            
## HiC_scaffold_103_56932900 "1/1"          "1/1"          "0/1"         
## HiC_scaffold_103_57470264 "1|1"          "1|1"          "1|1"         
## HiC_scaffold_104_7771140  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_104_9103028  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_104_10633168 "0/0"          "0/0"          "1/1"         
## HiC_scaffold_104_18917031 "1/1"          "0/1"          "0/0"         
## HiC_scaffold_104_20851902 "1/1"          "1/1"          NA            
## HiC_scaffold_104_24451803 "0/0"          NA             "0/0"         
## HiC_scaffold_104_28597688 "0/1"          "0/1"          "0/0"         
## HiC_scaffold_104_40927999 "0/0"          "0/0"          "0/0"         
## HiC_scaffold_104_46490074 "0/1"          "0/0"          "1/1"         
## HiC_scaffold_104_49759053 "0/0"          "0/0"          NA            
## HiC_scaffold_104_57267896 "0/1"          "0/1"          "0/1"         
## HiC_scaffold_104_62570010 "0/0"          NA             "0/0"         
## HiC_scaffold_11_32804173  "0/0"          "0/1"          NA            
## HiC_scaffold_11_34516508  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_11_35332996  NA             "0/0"          "0/0"         
## HiC_scaffold_11_35904027  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_11_41539793  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_11_41604080  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_11_42855323  "0/1"          NA             "1/1"         
## HiC_scaffold_11_45339409  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_11_45339410  "0|1"          "0|1"          NA            
## HiC_scaffold_11_47544035  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_12_7515164   "0/1"          "1/1"          NA            
## HiC_scaffold_12_12640100  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_12_12826705  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_12_14899285  "1/1"          "0/1"          "0/1"         
## HiC_scaffold_12_17465672  "1|1"          "0/0"          "1/1"         
## HiC_scaffold_12_22770710  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_12_32318964  "0/1"          "1|1"          "0/0"         
## HiC_scaffold_12_35136373  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_12_40687860  "0/0"          NA             "1|1"         
## HiC_scaffold_13_2938168   "0|1"          "1/1"          "1/1"         
## HiC_scaffold_13_20350974  "0/1"          "0/0"          NA            
## HiC_scaffold_13_27759554  NA             NA             "0/0"         
## HiC_scaffold_13_28146828  "2|2"          "0/0"          NA            
## HiC_scaffold_13_28146830  "2|2"          "0/0"          NA            
## HiC_scaffold_13_28925343  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_13_31913129  NA             "1/1"          "0/0"         
## HiC_scaffold_13_32078924  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_13_33864805  "0/1"          "1/1"          NA            
## HiC_scaffold_13_34892542  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_13_34893103  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_13_35762551  "0|1"          "0/0"          "1|1"         
## HiC_scaffold_13_35881745  NA             "0/0"          "0/1"         
## HiC_scaffold_13_35881749  "0/0"          NA             "0/1"         
## HiC_scaffold_14_3843214   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_14_25884262  "1|1"          "0/2"          "0/0"         
## HiC_scaffold_14_27050415  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_14_27118495  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_14_27277222  "1|2"          "0/1"          NA            
## HiC_scaffold_14_29215814  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_15_2460398   "0/1"          "0/1"          "0/0"         
## HiC_scaffold_15_2462980   "0/0"          "0/1"          "0/0"         
## HiC_scaffold_15_2467289   "0/1"          "1/1"          "1/1"         
## HiC_scaffold_15_5669141   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_15_13700694  "0/0"          "0/2"          "0/1"         
## HiC_scaffold_15_17825275  "0|1"          "1|1"          "1|1"         
## HiC_scaffold_15_19938475  "0/1"          NA             "0/0"         
## HiC_scaffold_15_23865956  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_15_28837774  "0/1"          "0/1"          "1/1"         
## HiC_scaffold_15_28837810  "0/1"          "0/1"          "1/1"         
## HiC_scaffold_15_28837823  "0/1"          "0/1"          "1/1"         
## HiC_scaffold_15_28837835  "0|1"          "0/1"          "1|1"         
## HiC_scaffold_15_28837841  "0|1"          "0/1"          "1|1"         
## HiC_scaffold_15_28837854  "0/1"          "0/1"          "0/1"         
## HiC_scaffold_15_34827832  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_15_34893807  NA             "0/0"          "0/0"         
## HiC_scaffold_15_35327348  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_15_42161112  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_15_42164926  "0|1"          "1|1"          "0|1"         
## HiC_scaffold_15_42164946  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_15_46289572  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_15_50591576  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_15_50759128  "1|1"          "1/1"          "1/1"         
## HiC_scaffold_15_51188336  "0/1"          "0/1"          NA            
## HiC_scaffold_15_54726640  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_15_54788235  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_15_56162375  NA             NA             "1|1"         
## HiC_scaffold_15_61091106  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_15_61464359  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_15_61510386  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_15_62309788  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_15_62309793  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_15_62771254  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_15_63493927  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_15_64997502  "0/0"          "0/0"          NA            
## HiC_scaffold_15_65007865  "1|1"          "1/1"          "1/1"         
## HiC_scaffold_15_65007879  "0|1"          "0/1"          "0/0"         
## HiC_scaffold_15_66038529  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_15_69811281  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_16_14205925  "1/1"          "0|1"          "0/0"         
## HiC_scaffold_16_30404047  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_16_57413288  "1|1"          "0|1"          "1|1"         
## HiC_scaffold_16_63687578  "1|1"          "0/1"          "0/0"         
## HiC_scaffold_16_74138787  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_16_74140106  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_16_76276015  NA             NA             "0/0"         
## HiC_scaffold_17_11390873  "0|1"          "0/1"          "1|1"         
## HiC_scaffold_17_12551128  NA             "0/1"          "1/1"         
## HiC_scaffold_17_16615612  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_17_18838093  "1|1"          "0/1"          "0/0"         
## HiC_scaffold_17_22801072  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_17_23788599  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_17_29383895  "0/0"          "1/1"          NA            
## HiC_scaffold_17_29618771  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_17_29976139  "1|1"          "0/1"          "1/1"         
## HiC_scaffold_17_31107213  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_17_32493792  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_17_33732050  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_17_33801314  "1|1"          "1|1"          "0/1"         
## HiC_scaffold_17_34081889  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_18_227565    "1/1"          "1/1"          NA            
## HiC_scaffold_18_1213486   "1/1"          "0/1"          "0/0"         
## HiC_scaffold_18_1701312   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_18_3506437   "1/1"          NA             "1/1"         
## HiC_scaffold_18_6304978   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_18_6351493   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_18_6358009   "0/0"          "0/0"          NA            
## HiC_scaffold_18_10770701  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_18_13342858  "1/1"          "1/1"          NA            
## HiC_scaffold_18_20045832  "0/0"          "0/0"          NA            
## HiC_scaffold_18_22682683  "0/0"          NA             "0/0"         
## HiC_scaffold_18_26337790  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_18_48929148  "0/0"          NA             "0/0"         
## HiC_scaffold_18_51490626  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_18_53723137  "1|1"          "0/0"          "0|1"         
## HiC_scaffold_18_54496637  "0/0"          "1|1"          NA            
## HiC_scaffold_18_55294388  "1/1"          "0|1"          NA            
## HiC_scaffold_19_279726    "0/0"          "0/0"          "0/1"         
## HiC_scaffold_19_6426572   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_19_6575887   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_19_7755254   "0/1"          "0/0"          "0/1"         
## HiC_scaffold_19_9301421   "1/1"          "1|1"          "0/1"         
## HiC_scaffold_19_9357388   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_19_9778841   NA             "1/1"          "1/1"         
## HiC_scaffold_19_10928976  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_19_10928980  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_19_10928982  "0/0"          NA             "1|1"         
## HiC_scaffold_19_11106347  "1|1"          "1|1"          NA            
## HiC_scaffold_19_11590139  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_19_11665300  "1/1"          "1/1"          NA            
## HiC_scaffold_19_14793640  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_19_22112743  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_19_25473671  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_19_25473692  "0/0"          NA             "1/1"         
## HiC_scaffold_19_28110829  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_19_28465002  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_19_28465167  "0/1"          "0/1"          "0/0"         
## HiC_scaffold_19_30106869  "0/0"          NA             "0/0"         
## HiC_scaffold_19_52538858  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_19_52596196  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_19_53482993  "1/1"          "1/1"          NA            
## HiC_scaffold_19_54312637  NA             "1/1"          "0/1"         
## HiC_scaffold_19_59345841  "0/0"          "0|1"          "1|1"         
## HiC_scaffold_2_3296144    "1|1"          "1|1"          "1|1"         
## HiC_scaffold_2_3418589    "1/1"          "1/1"          NA            
## HiC_scaffold_2_3864060    "1/1"          "0/1"          "0/0"         
## HiC_scaffold_2_4104755    "0|1"          "0/0"          "0|2"         
## HiC_scaffold_2_4104758    "0/0"          "0/0"          "0|2"         
## HiC_scaffold_2_8316721    "0|1"          "0/1"          "0|1"         
## HiC_scaffold_2_9098999    "1/1"          "0/0"          "1/1"         
## HiC_scaffold_2_10457537   "1/1"          "0/0"          "0/1"         
## HiC_scaffold_2_19048125   "1/1"          "0/0"          "0/1"         
## HiC_scaffold_2_21748201   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_2_33187764   "0/0"          "0|1"          "0/0"         
## HiC_scaffold_2_33187770   "0/0"          "0|1"          "0/0"         
## HiC_scaffold_2_33187959   "0/0"          "0/1"          "1/1"         
## HiC_scaffold_2_41603929   "0/1"          "1/1"          "1/1"         
## HiC_scaffold_2_52233191   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_2_52400748   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_2_52403793   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_2_52799130   "1/1"          "0/1"          "1/1"         
## HiC_scaffold_20_10332897  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_20_17198418  "0/1"          "1|1"          "0|1"         
## HiC_scaffold_20_17915398  "0/0"          NA             "0/0"         
## HiC_scaffold_20_18872955  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_20_19055301  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_20_19150094  "0/1"          "0/1"          "1/1"         
## HiC_scaffold_20_20651022  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_20_22651296  "0/1"          "0/1"          "1/1"         
## HiC_scaffold_21_2009156   "0/0"          "1/1"          "0/1"         
## HiC_scaffold_21_2435648   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_21_7164210   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_21_9786512   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_21_12424922  "1/1"          "1|1"          "1|1"         
## HiC_scaffold_21_17966833  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_21_19025429  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_21_20058318  NA             "0/1"          "0/0"         
## HiC_scaffold_21_20562855  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_21_20661860  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_21_20895395  NA             "1|1"          "1|1"         
## HiC_scaffold_21_21158811  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_21_22250857  "0/1"          "0|1"          "0/1"         
## HiC_scaffold_21_22250866  "0/0"          "0|1"          NA            
## HiC_scaffold_21_22257737  "1|1"          "1|1"          "1/1"         
## HiC_scaffold_21_22644667  "0|1"          "0|1"          "1|1"         
## HiC_scaffold_21_22644673  "0|1"          "0|1"          "1|1"         
## HiC_scaffold_21_22666888  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_21_23905416  "1|1"          NA             "1|1"         
## HiC_scaffold_21_23981651  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_21_24287068  "1/1"          "1|1"          "0/0"         
## HiC_scaffold_21_30798434  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_21_35006232  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_21_35779294  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_22_124910    "0/0"          "0/1"          "0/1"         
## HiC_scaffold_22_751023    "1|1"          "0|1"          "0/1"         
## HiC_scaffold_22_1042644   "0/0"          "1|1"          "0|1"         
## HiC_scaffold_22_1044708   "0/0"          "1/1"          "1/1"         
## HiC_scaffold_22_2174911   "0/1"          "0/0"          NA            
## HiC_scaffold_22_3431122   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_22_3446787   "0/0"          "0|1"          "1|1"         
## HiC_scaffold_22_3451756   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_22_3720435   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_22_4065466   "0/0"          NA             "0/0"         
## HiC_scaffold_22_4739889   "0/2"          "0/0"          "0/0"         
## HiC_scaffold_22_4918263   "0/0"          "0|1"          "1|1"         
## HiC_scaffold_22_5750008   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_22_5769942   "0/0"          "0/0"          "0|1"         
## HiC_scaffold_22_28264522  "1|1"          "1/1"          NA            
## HiC_scaffold_22_28265115  "1/1"          NA             NA            
## HiC_scaffold_22_29205851  "1/1"          "1/1"          "1|1"         
## HiC_scaffold_22_29822340  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_22_30797357  "0/0"          "0|1"          "0/0"         
## HiC_scaffold_22_32042610  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_23_11215327  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_23_27081333  "0/0"          "1/1"          NA            
## HiC_scaffold_23_28672255  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_23_29218828  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_23_32528768  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_23_32669383  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_23_33199663  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_23_33245843  NA             "0/1"          "1/1"         
## HiC_scaffold_23_40824545  "0/0"          "1|1"          "0|1"         
## HiC_scaffold_23_41504669  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_24_16622654  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_24_16622681  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_24_19851560  "0|1"          "0/1"          "1/1"         
## HiC_scaffold_24_20590563  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_24_27745754  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_24_28763699  "1|1"          "0/1"          "0/0"         
## HiC_scaffold_24_28763703  "0/1"          "1|1"          "1|1"         
## HiC_scaffold_25_4135969   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_25_4201677   "0/0"          "1/1"          "1/1"         
## HiC_scaffold_25_5872831   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_25_6879627   NA             "0/0"          "0/0"         
## HiC_scaffold_25_8172813   "1/1"          "1/1"          NA            
## HiC_scaffold_25_9969507   "0/0"          "0/1"          "0/1"         
## HiC_scaffold_25_10691336  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_25_21286462  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_26_4086662   "0/1"          "0/1"          "0/0"         
## HiC_scaffold_26_7539671   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_26_8348511   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_26_9043748   "1|1"          "0/0"          "0/1"         
## HiC_scaffold_26_9045655   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_26_11253181  "0/1"          "0|1"          "0|1"         
## HiC_scaffold_26_17828344  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_26_17932520  "1/1"          NA             "1/1"         
## HiC_scaffold_26_17941459  "0/0"          NA             "0/0"         
## HiC_scaffold_26_17960877  "0/0"          "1/1"          NA            
## HiC_scaffold_26_18284041  "0/1"          "0/1"          "0/0"         
## HiC_scaffold_26_18288701  "1|1"          "0|1"          NA            
## HiC_scaffold_26_18294422  "0/1"          "0/0"          NA            
## HiC_scaffold_26_21307365  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_26_22159924  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_26_22161535  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_26_24794176  NA             "1/1"          "1/1"         
## HiC_scaffold_26_28538113  NA             "0|1"          "1|1"         
## HiC_scaffold_26_29031357  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_26_29163462  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_26_42631018  "0/0"          "1|1"          "0/1"         
## HiC_scaffold_26_42634814  "0/1"          "1/1"          "0/1"         
## HiC_scaffold_26_43483190  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_26_49955889  "0/0"          "0/0"          NA            
## HiC_scaffold_26_58342510  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_27_1496120   "0/0"          "0|1"          "0/0"         
## HiC_scaffold_27_1947057   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_27_2359058   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_27_2699645   "0/1"          NA             "0/0"         
## HiC_scaffold_27_4425475   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_27_7539469   "0/0"          "0/1"          NA            
## HiC_scaffold_27_7777122   "1/1"          "1|1"          "0/0"         
## HiC_scaffold_27_16657070  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_27_24539255  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_27_34642359  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_27_34647277  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_27_35380535  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_27_35383230  "1|1"          "0/0"          "0/1"         
## HiC_scaffold_28_21261390  "0|1"          "0/0"          "0|1"         
## HiC_scaffold_28_24490442  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_28_25601927  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_28_31793968  "0/0"          "1|1"          "0|1"         
## HiC_scaffold_28_32126687  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_28_34779518  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_28_36042491  "1/1"          "0|1"          "0/0"         
## HiC_scaffold_28_36692361  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_28_38672993  "0/0"          "1|1"          "0/1"         
## HiC_scaffold_28_39640526  "1/1"          NA             "0/0"         
## HiC_scaffold_28_40169242  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_28_41059640  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_28_42514830  NA             "0/0"          "1/1"         
## HiC_scaffold_28_42601570  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_28_42601585  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_28_43018803  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_28_43036165  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_29_344317    "0/0"          "0/0"          "0/1"         
## HiC_scaffold_29_3811176   "0/1"          "0/1"          "0/1"         
## HiC_scaffold_29_6073993   NA             "0/0"          "0/0"         
## HiC_scaffold_29_6415222   "0/0"          "0/0"          "0/2"         
## HiC_scaffold_29_8224424   "0/1"          "1/1"          "0/1"         
## HiC_scaffold_29_11153624  "0/1"          "0/1"          NA            
## HiC_scaffold_29_11153712  "0/1"          "0/1"          "0/0"         
## HiC_scaffold_29_11167966  NA             "1/1"          "1/1"         
## HiC_scaffold_29_11491468  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_29_12103558  "0/1"          "0/0"          NA            
## HiC_scaffold_29_14279322  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_29_14913907  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_29_16378276  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_29_20635937  "0/0"          "0/1"          NA            
## HiC_scaffold_29_20636787  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_29_22560215  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_29_22561144  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_29_24017849  "0/0"          "0/0"          NA            
## HiC_scaffold_29_31603590  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_3_21670751   "0/1"          "0/1"          "0/1"         
## HiC_scaffold_3_24747014   "0/1"          "0/0"          "0/1"         
## HiC_scaffold_3_27861792   "0/1"          "0/0"          NA            
## HiC_scaffold_3_28057869   "1/1"          "0/1"          "0/0"         
## HiC_scaffold_3_28441436   "0/1"          "0/0"          "1/1"         
## HiC_scaffold_3_28694380   "1|1"          "0/0"          NA            
## HiC_scaffold_3_31361023   "0/1"          "0/0"          "0/1"         
## HiC_scaffold_3_31960572   NA             "0/0"          "1|1"         
## HiC_scaffold_3_32157169   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_3_32159152   "0/0"          NA             "0/0"         
## HiC_scaffold_3_34124237   "1/1"          "0/0"          "0/1"         
## HiC_scaffold_30_14199802  "0/0"          "1|1"          "1/1"         
## HiC_scaffold_30_16052331  "0/1"          "1/1"          NA            
## HiC_scaffold_30_19914075  "0/1"          NA             "1/1"         
## HiC_scaffold_30_20688783  "0/0"          "1/1"          NA            
## HiC_scaffold_30_21446076  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_30_21598563  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_30_22155728  "0/0"          "0/1"          NA            
## HiC_scaffold_31_687411    "0|1"          "0/0"          "0/0"         
## HiC_scaffold_31_3224722   "0/1"          "0/0"          "0/1"         
## HiC_scaffold_31_3574854   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_31_5899551   NA             "1/1"          "1/1"         
## HiC_scaffold_31_5911491   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_31_6297680   "0/0"          "1/1"          "0/1"         
## HiC_scaffold_31_12394016  NA             "1|1"          "1|1"         
## HiC_scaffold_31_12394040  NA             "0/0"          "0/0"         
## HiC_scaffold_31_18612650  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_32_4446859   "0/0"          "1/1"          "0/1"         
## HiC_scaffold_32_5274796   "0/0"          "0/1"          "1/1"         
## HiC_scaffold_32_5275108   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_32_5282358   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_32_5450203   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_32_44200178  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_33_638523    "0/0"          "0/0"          "0/1"         
## HiC_scaffold_33_44489563  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_33_44489988  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_33_47080180  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_33_47495907  "1/1"          "0|1"          "1|1"         
## HiC_scaffold_33_51865876  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_34_1096982   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_34_6091943   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_34_6100160   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_34_24368584  "0/0"          NA             "1/1"         
## HiC_scaffold_35_3233120   "0/1"          "0/0"          "0|1"         
## HiC_scaffold_35_3253574   "0/0"          "0/1"          "0/1"         
## HiC_scaffold_35_5512296   "0/1"          "0/1"          "1/1"         
## HiC_scaffold_35_15114788  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_35_21214090  "0/1"          "0/0"          NA            
## HiC_scaffold_35_21462564  "0/0"          NA             "0/0"         
## HiC_scaffold_35_22746783  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_35_22747085  "0/1"          "1|1"          "0/0"         
## HiC_scaffold_35_23059580  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_35_23158882  "0/0"          "1/1"          NA            
## HiC_scaffold_35_23261143  "1/1"          "1|1"          "1/1"         
## HiC_scaffold_35_24403602  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_35_24403620  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_35_24993986  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_35_24993998  "1|1"          "1|1"          "0/1"         
## HiC_scaffold_36_1538038   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_36_2464728   "1/1"          "0|1"          "1/1"         
## HiC_scaffold_36_5489050   "0/1"          "0/1"          "1/1"         
## HiC_scaffold_36_9673981   "0/0"          "0|1"          "0/0"         
## HiC_scaffold_36_9674127   "1/1"          "1/1"          NA            
## HiC_scaffold_36_9674756   "0/1"          "1/1"          "1/1"         
## HiC_scaffold_36_9676329   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_36_12304516  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_36_12515555  "0|1"          "0|1"          "1|1"         
## HiC_scaffold_36_13092647  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_36_13766994  "1/1"          NA             NA            
## HiC_scaffold_36_14567741  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_36_15530578  "1|1"          "1|1"          "0/1"         
## HiC_scaffold_37_679894    "1/1"          "1/1"          "1/1"         
## HiC_scaffold_37_916693    "0/0"          "0/0"          "0|1"         
## HiC_scaffold_37_928146    "1/1"          "0/1"          "0/0"         
## HiC_scaffold_37_1256768   "0/0"          NA             "0/0"         
## HiC_scaffold_37_1270034   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_37_1770997   "0|1"          "0/0"          "1/1"         
## HiC_scaffold_37_1798298   "1|1"          "1/1"          "1/1"         
## HiC_scaffold_37_2010342   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_37_2141526   "0/0"          "1/1"          "0/1"         
## HiC_scaffold_37_3952190   "1|1"          "0/0"          "1|1"         
## HiC_scaffold_37_3952215   "1|1"          "0/0"          "1|1"         
## HiC_scaffold_37_9915037   "0/1"          "1/1"          NA            
## HiC_scaffold_38_5383430   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_38_5668363   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_38_5879849   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_38_5880155   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_38_10612790  "1/1"          "0/1"          "0/1"         
## HiC_scaffold_38_11940240  "2|2"          "0|1"          "0|1"         
## HiC_scaffold_38_12878826  "0/0"          NA             "0|1"         
## HiC_scaffold_38_12959698  "1/1"          "0/0"          "1|1"         
## HiC_scaffold_38_13087368  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_38_13480648  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_38_13965243  NA             "1/1"          "1/1"         
## HiC_scaffold_38_14089955  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_38_14408072  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_38_14931216  "0|0"          "0/1"          "0/1"         
## HiC_scaffold_38_14978356  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_38_14978367  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_38_15292863  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_38_15306135  "0/0"          "0/1"          "1|1"         
## HiC_scaffold_38_16077506  "0/0"          "0/1"          NA            
## HiC_scaffold_38_16138965  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_38_16226040  NA             "0/1"          NA            
## HiC_scaffold_39_1393769   "0/1"          "1|1"          "0/0"         
## HiC_scaffold_39_2014970   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_39_2014982   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_39_2014985   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_39_2426443   "0|1"          "0/0"          "1|1"         
## HiC_scaffold_39_2485330   "0/0"          NA             "1|1"         
## HiC_scaffold_39_3350506   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_39_5897388   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_39_17631133  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_4_12107187   NA             NA             "1/1"         
## HiC_scaffold_4_18241670   "1|1"          NA             "1|1"         
## HiC_scaffold_4_18241723   "1/1"          NA             "1/1"         
## HiC_scaffold_4_22418566   "0|1"          NA             NA            
## HiC_scaffold_4_27899990   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_4_35575118   "0/0"          "0/1"          "0/0"         
## HiC_scaffold_4_38000967   NA             "1/1"          "1/1"         
## HiC_scaffold_4_50654021   NA             "0/0"          NA            
## HiC_scaffold_40_2243415   "0/0"          "0|1"          "1/1"         
## HiC_scaffold_40_3000572   "1/1"          "1/1"          "0/1"         
## HiC_scaffold_40_3014177   "1/1"          "1/1"          "1|1"         
## HiC_scaffold_40_3027900   "1/1"          "0/1"          "0/0"         
## HiC_scaffold_40_3143834   "0/0"          "0/1"          "0/1"         
## HiC_scaffold_40_3843942   "0/0"          "1/1"          NA            
## HiC_scaffold_40_3847620   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_40_3891007   "0/1"          "0/0"          NA            
## HiC_scaffold_40_3920667   "1|1"          "2/2"          "2/2"         
## HiC_scaffold_40_4177963   NA             "0/1"          "0/0"         
## HiC_scaffold_40_4819107   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_40_4819834   "1|1"          "1/1"          "1|1"         
## HiC_scaffold_40_5788271   "0/0"          "0/0"          NA            
## HiC_scaffold_40_5965269   "0/0"          "0|0"          "1|1"         
## HiC_scaffold_40_6204154   "0/1"          "0/0"          "1/1"         
## HiC_scaffold_40_8387917   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_41_3235384   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_41_3583000   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_41_5334504   "1/1"          "1/1"          "1|1"         
## HiC_scaffold_41_5387631   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_41_6423426   "0/0"          "0/1"          "0/0"         
## HiC_scaffold_41_14359947  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_41_24007593  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_41_26225447  "0/1"          "0/1"          "0/0"         
## HiC_scaffold_41_28626484  "1/1"          "0/0"          NA            
## HiC_scaffold_41_28660620  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_41_31007688  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_42_1131084   "0/1"          "0/0"          NA            
## HiC_scaffold_42_1818523   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_42_2165002   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_42_2711332   "1|1"          "0/1"          "0/0"         
## HiC_scaffold_42_6142699   NA             "1/1"          "1/1"         
## HiC_scaffold_42_6744976   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_42_8066919   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_42_8068292   NA             "0/1"          "0/1"         
## HiC_scaffold_42_12487888  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_42_41366687  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_42_47313337  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_42_47313338  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_42_50784971  "0|1"          "1|1"          "0/0"         
## HiC_scaffold_42_50784977  "0|1"          "1|1"          NA            
## HiC_scaffold_42_50784981  "0/0"          "0/0"          NA            
## HiC_scaffold_42_51916989  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_43_3842003   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_43_14140861  "0/1"          "1|1"          "0/0"         
## HiC_scaffold_43_15053605  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_43_17289945  "0/0"          "0/0"          NA            
## HiC_scaffold_43_29967704  "1/1"          "0/0"          NA            
## HiC_scaffold_43_35745831  "1|1"          "0/1"          NA            
## HiC_scaffold_43_37627949  "0|1"          "0|1"          "0|1"         
## HiC_scaffold_43_37628126  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_43_44017118  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_43_55124138  "0/1"          "0/1"          "1|1"         
## HiC_scaffold_43_60107326  "0|1"          "0|1"          "0/0"         
## HiC_scaffold_43_61359386  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_43_61702593  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_43_61702606  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_43_61702721  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_43_61702738  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_43_62511703  "1|1"          NA             "0/0"         
## HiC_scaffold_43_64069457  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_43_64577269  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_44_1920144   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_44_2148035   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_44_2568167   "0/0"          "0/1"          "1/1"         
## HiC_scaffold_45_4180070   NA             "0/0"          "0/1"         
## HiC_scaffold_45_4797754   "2/2"          "0/0"          NA            
## HiC_scaffold_45_5911123   NA             "1|1"          "0/0"         
## HiC_scaffold_45_6958990   "1/1"          "1/1"          "0/1"         
## HiC_scaffold_45_8516216   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_45_10191213  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_45_12005885  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_45_12006766  "0/0"          "0|1"          "0/0"         
## HiC_scaffold_45_24736172  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_45_24739830  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_46_9691567   "1|1"          "0/0"          "0/1"         
## HiC_scaffold_46_17380257  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_46_18387147  "1|1"          "0/1"          "0|1"         
## HiC_scaffold_46_37092355  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_46_39183624  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_46_39390547  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_46_42964941  "0/1"          "1|1"          "0|1"         
## HiC_scaffold_46_42986653  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_46_52074364  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_46_54255667  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_47_3750532   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_47_3751345   NA             "0/0"          "1/1"         
## HiC_scaffold_47_15400639  "0|1"          "1|1"          "1|1"         
## HiC_scaffold_47_24072414  "0/1"          "1|1"          "1|1"         
## HiC_scaffold_47_25273825  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_48_8752752   "2/2"          "0/0"          "0/0"         
## HiC_scaffold_48_10765920  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_48_16077918  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_48_16077940  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_48_16411609  "0/0"          NA             "1/1"         
## HiC_scaffold_48_19972580  "0/1"          "0/1"          "1/1"         
## HiC_scaffold_48_23493079  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_48_23597210  "1|1"          NA             "0/1"         
## HiC_scaffold_48_24478493  "0/0"          "0|1"          "0/1"         
## HiC_scaffold_48_24881148  "0/1"          "1/1"          NA            
## HiC_scaffold_48_25865723  "1/1"          "1/1"          NA            
## HiC_scaffold_48_25984068  "1|1"          "0/0"          NA            
## HiC_scaffold_48_25989079  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_48_30601375  "1|1"          "1|1"          "0|1"         
## HiC_scaffold_48_31662115  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_48_41971562  NA             "0/0"          "0/0"         
## HiC_scaffold_49_3392801   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_49_6101692   "0/1"          "1/1"          NA            
## HiC_scaffold_49_7996315   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_49_9470474   "1/1"          "0/1"          "0/0"         
## HiC_scaffold_49_9886007   "0/1"          "0/0"          "1/1"         
## HiC_scaffold_49_12592113  "0/0"          "0/0"          NA            
## HiC_scaffold_49_12741575  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_49_15135019  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_49_25906219  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_49_26614199  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_49_26655554  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_49_37568341  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_49_37568353  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_49_40002255  "1|1"          "0|1"          "1|1"         
## HiC_scaffold_49_40003229  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_49_42966376  "0/1"          "1|1"          "1/1"         
## HiC_scaffold_5_801252     "0/1"          "0/1"          "1/1"         
## HiC_scaffold_5_1446603    "1|1"          "1|1"          "0/0"         
## HiC_scaffold_5_1446611    "1|1"          "1|1"          "0/0"         
## HiC_scaffold_5_1530759    "0/0"          "0/0"          "0/0"         
## HiC_scaffold_5_1539275    "0/0"          "0/0"          "0/0"         
## HiC_scaffold_5_1789576    "0/0"          "0/0"          "1|1"         
## HiC_scaffold_5_1808197    "1/1"          "0/0"          NA            
## HiC_scaffold_5_1808204    "0/0"          "1/1"          "0/0"         
## HiC_scaffold_5_1943895    "1|1"          "1|1"          "0/1"         
## HiC_scaffold_5_1944469    "1/1"          "1/1"          "1/1"         
## HiC_scaffold_5_2857283    "0/0"          "0/0"          "1|1"         
## HiC_scaffold_5_4061378    "0/1"          "1/1"          "1/1"         
## HiC_scaffold_5_4340647    NA             "0/0"          NA            
## HiC_scaffold_5_4435246    "1/1"          "0/1"          "1/1"         
## HiC_scaffold_5_8868783    "0/0"          "1/1"          "0/1"         
## HiC_scaffold_50_4315969   "0/1"          "0/1"          "0/1"         
## HiC_scaffold_50_11652296  "0/1"          "1|1"          "1/1"         
## HiC_scaffold_50_11657309  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_50_15521027  "1/1"          "0/1"          "0/1"         
## HiC_scaffold_50_21050962  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_50_23686202  "0|1"          "1/1"          "0/1"         
## HiC_scaffold_50_27393462  "0|1"          "0|1"          "0/0"         
## HiC_scaffold_50_42586883  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_50_45087211  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_50_49796550  "1/1"          NA             "1/1"         
## HiC_scaffold_50_54383367  "0/0"          NA             "0/1"         
## HiC_scaffold_50_63318678  "1/1"          "1/1"          NA            
## HiC_scaffold_51_3521000   "0/0"          "0/1"          "0/1"         
## HiC_scaffold_51_4681905   "1/1"          NA             "0/1"         
## HiC_scaffold_51_6305599   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_51_8530818   "0/0"          "0/1"          "0/0"         
## HiC_scaffold_51_11653312  NA             "0/0"          "1/1"         
## HiC_scaffold_51_13138547  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_51_14457091  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_51_15512668  "0|1"          "0/1"          "0/1"         
## HiC_scaffold_51_17816346  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_51_19997934  "1|1"          "1|1"          NA            
## HiC_scaffold_51_19997936  "1|1"          "1|1"          NA            
## HiC_scaffold_51_20870773  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_51_26660104  "0/0"          NA             "0/0"         
## HiC_scaffold_51_40727521  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_51_40892841  "0/1"          "0/1"          "0/1"         
## HiC_scaffold_51_41717519  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_51_42547638  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_52_3335804   "1/1"          "0/0"          "0/1"         
## HiC_scaffold_52_4149130   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_52_6893679   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_52_13155416  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_52_13155437  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_52_13155442  "1|1"          "1|1"          NA            
## HiC_scaffold_52_14885688  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_52_14895078  NA             "0/0"          "0/0"         
## HiC_scaffold_52_15141791  "0/1"          "0/1"          "0/0"         
## HiC_scaffold_52_15743051  "0/0"          "0/1"          "1|1"         
## HiC_scaffold_52_15760201  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_52_15834589  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_52_15841769  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_52_15862421  "0|1"          "1|1"          "0|1"         
## HiC_scaffold_52_15970970  "0/2"          "0/0"          "1/1"         
## HiC_scaffold_52_16275237  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_52_16275240  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_52_16275290  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_52_16524164  "0/0"          NA             "0/0"         
## HiC_scaffold_52_16524572  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_52_16525647  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_52_16637047  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_52_17202127  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_52_17207724  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_52_17508820  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_52_17547593  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_52_17551239  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_52_17560696  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_52_17560699  "0/0"          "0|1"          "1|1"         
## HiC_scaffold_52_17741250  "0/0"          NA             "0/0"         
## HiC_scaffold_52_17742260  "0|1"          "1|1"          "0|1"         
## HiC_scaffold_52_18340578  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_52_18415911  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_52_22189517  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_52_22526592  "1/1"          "0/1"          NA            
## HiC_scaffold_52_26393471  "0/1"          "0/1"          "1/1"         
## HiC_scaffold_52_26799380  "0/1"          NA             "0/1"         
## HiC_scaffold_52_31871931  NA             "0/0"          NA            
## HiC_scaffold_52_31874283  "1|1"          "1/1"          "1/1"         
## HiC_scaffold_52_31874287  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_52_32161053  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_52_33165557  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_52_33897620  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_52_34763156  NA             "1/1"          "0/1"         
## HiC_scaffold_52_34763171  NA             "1/1"          "0/1"         
## HiC_scaffold_52_35174755  "0|1"          NA             "0/0"         
## HiC_scaffold_52_35608453  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_52_35608470  "1|1"          "0/1"          "1|1"         
## HiC_scaffold_52_39464728  "1|1"          NA             "0/0"         
## HiC_scaffold_52_42141354  "1|1"          "0/0"          "0/1"         
## HiC_scaffold_52_44675725  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_52_49935920  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_53_21789524  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_53_25168042  "0/1"          NA             "1|1"         
## HiC_scaffold_53_26398989  "0/0"          "0/0"          NA            
## HiC_scaffold_53_26398992  "0/0"          "0/0"          NA            
## HiC_scaffold_53_26398994  "0/0"          "0/0"          NA            
## HiC_scaffold_53_26549665  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_53_29227676  "0|1"          NA             "1|1"         
## HiC_scaffold_53_31250349  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_54_530581    "1|1"          "1|1"          "1|1"         
## HiC_scaffold_54_794095    NA             "0/0"          "1|1"         
## HiC_scaffold_54_1171109   "0/0"          "1|1"          "0|1"         
## HiC_scaffold_54_1378956   "0/0"          "1/1"          "0/1"         
## HiC_scaffold_54_1380539   "0/0"          "0/1"          "1/1"         
## HiC_scaffold_54_3045015   "1/1"          "0/1"          "1/1"         
## HiC_scaffold_54_3185987   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_54_4401098   "1|1"          "0/0"          "0/1"         
## HiC_scaffold_54_5595903   "0/0"          "0/1"          "0/0"         
## HiC_scaffold_54_5595921   "0/0"          "0/1"          "0/0"         
## HiC_scaffold_54_5595928   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_54_5595949   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_54_6649662   NA             "1/1"          "1/1"         
## HiC_scaffold_54_8036734   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_54_9206614   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_54_35913192  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_54_35913282  NA             "0|1"          "0|1"         
## HiC_scaffold_54_35913283  NA             "0|1"          "0|1"         
## HiC_scaffold_55_1260491   "1/1"          "0/1"          "1/1"         
## HiC_scaffold_55_3254027   "1/1"          "1/1"          "0/1"         
## HiC_scaffold_55_3281985   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_55_5409544   "1/1"          "1/1"          "0|1"         
## HiC_scaffold_55_5411094   "1|1"          "1|1"          "0/1"         
## HiC_scaffold_55_5411115   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_55_18121799  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_55_19605809  "0/0"          "1|1"          "0|1"         
## HiC_scaffold_55_19605817  NA             "1|1"          "0|1"         
## HiC_scaffold_55_19605821  NA             "1|1"          "0|1"         
## HiC_scaffold_55_20195204  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_55_20886967  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_55_23222937  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_55_23626331  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_55_24539590  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_55_24585939  "1/1"          "1/1"          NA            
## HiC_scaffold_55_34174151  "0/1"          "0/1"          "0/0"         
## HiC_scaffold_56_17874332  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_56_18635259  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_56_23654344  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_56_35850533  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_56_35850539  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_56_40813556  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_56_53211633  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_56_60070829  NA             "1/1"          "1|1"         
## HiC_scaffold_56_73286017  "1|1"          "0/1"          "0/1"         
## HiC_scaffold_56_73829442  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_56_73829443  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_56_76060304  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_57_25306408  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_57_29222385  "0|1"          "0/0"          NA            
## HiC_scaffold_57_29592432  "0/1"          NA             "0/1"         
## HiC_scaffold_57_31472698  "1|1"          "0/1"          "0/0"         
## HiC_scaffold_57_32371742  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_57_36495072  "0/1"          "1/1"          NA            
## HiC_scaffold_57_37286264  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_57_38537415  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_57_45438854  "1|1"          "1|2"          "2|2"         
## HiC_scaffold_57_52856874  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_57_53575355  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_57_55856783  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_58_1362614   "1/1"          "0/1"          NA            
## HiC_scaffold_58_1432845   "1/1"          "1|1"          "0/0"         
## HiC_scaffold_58_1541720   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_58_2777120   NA             "1/1"          "0/0"         
## HiC_scaffold_58_2973169   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_58_3243043   "0/0"          NA             "0/0"         
## HiC_scaffold_58_4035282   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_58_5442157   "0/1"          "1|1"          "0/1"         
## HiC_scaffold_58_8004631   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_58_8058998   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_58_8932837   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_58_14814944  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_58_15639988  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_58_15707198  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_58_15707258  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_58_15710623  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_58_19155063  NA             "0/0"          "1|1"         
## HiC_scaffold_58_20224050  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_58_38475355  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_59_3979055   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_59_5071810   "1|1"          "0/0"          "1|1"         
## HiC_scaffold_59_5349936   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_59_5350114   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_59_7738302   "0/1"          "0/1"          "0/0"         
## HiC_scaffold_59_7738351   "0/1"          "0/1"          "0/0"         
## HiC_scaffold_59_7958561   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_59_9273798   "0/1"          "0/1"          "0/0"         
## HiC_scaffold_59_50928099  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_59_52960060  "0/1"          "1|1"          "0/0"         
## HiC_scaffold_6_10569023   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_6_10711445   "1/1"          "0/1"          "1/1"         
## HiC_scaffold_6_13209200   "0/0"          "1|1"          "0/1"         
## HiC_scaffold_6_13213107   "0/0"          NA             NA            
## HiC_scaffold_6_13311684   "1|1"          "0/0"          NA            
## HiC_scaffold_6_15670783   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_6_19111232   "1/1"          "0/0"          "1|1"         
## HiC_scaffold_6_32805498   "0/1"          "1/1"          NA            
## HiC_scaffold_6_38793174   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_6_41092101   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_6_41342933   "0/1"          "1/1"          "0/0"         
## HiC_scaffold_6_47594508   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_60_70878     "1|1"          "1|1"          "1|1"         
## HiC_scaffold_60_99549     "0/1"          "0/0"          "0|1"         
## HiC_scaffold_60_201823    "1/1"          "1/1"          "0/0"         
## HiC_scaffold_60_712969    "1|1"          "1|1"          "0/0"         
## HiC_scaffold_60_744783    "0|1"          "0/0"          "0/0"         
## HiC_scaffold_60_744788    "0/0"          "1|1"          "0/0"         
## HiC_scaffold_60_22142128  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_60_27599770  "1/1"          "1/1"          NA            
## HiC_scaffold_60_30608878  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_60_32657324  "0/0"          "0/0"          NA            
## HiC_scaffold_60_32672580  NA             "1/1"          "1/1"         
## HiC_scaffold_60_38856893  "0/1"          "0/0"          NA            
## HiC_scaffold_60_39028335  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_60_40296869  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_60_42775723  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_60_44687906  "1|1"          "0/1"          "1/1"         
## HiC_scaffold_60_44804601  "1/1"          "0/0"          NA            
## HiC_scaffold_60_53696867  "0|1"          "0|1"          NA            
## HiC_scaffold_60_53696868  "0|1"          "0|1"          NA            
## HiC_scaffold_60_60651515  "0|1"          "1/1"          "0/0"         
## HiC_scaffold_60_70678462  "1|1"          "1/1"          "1/1"         
## HiC_scaffold_61_2205328   "0|1"          "0/0"          "0/1"         
## HiC_scaffold_61_2491706   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_61_4009916   "0/0"          "0/0"          NA            
## HiC_scaffold_61_4062917   "0/0"          "0/0"          NA            
## HiC_scaffold_61_4122763   "1|1"          "1|1"          NA            
## HiC_scaffold_61_4216461   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_61_4325053   "0/0"          "0/1"          "0/1"         
## HiC_scaffold_61_9004838   "1|1"          "0/1"          "1|1"         
## HiC_scaffold_61_14635083  "0/0"          "0|1"          "0/0"         
## HiC_scaffold_62_1128608   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_62_11335200  "0/0"          "0/0"          "0|0"         
## HiC_scaffold_62_18828476  "1/1"          NA             "1/1"         
## HiC_scaffold_62_21548870  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_62_23103274  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_62_25793456  "1/1"          "1/1"          NA            
## HiC_scaffold_62_25887474  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_62_28516096  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_62_28516099  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_62_28818725  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_62_28818729  "0/0"          "0/0"          NA            
## HiC_scaffold_62_45207353  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_63_3092269   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_63_3977940   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_63_4084937   NA             "0/0"          "0/0"         
## HiC_scaffold_63_4196326   "0/0"          "0/1"          NA            
## HiC_scaffold_63_6262453   "0/1"          "0/0"          "1/1"         
## HiC_scaffold_63_6350204   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_63_6458794   "0/1"          "0/0"          "0|1"         
## HiC_scaffold_64_9162978   "0/2"          "0/0"          "0/0"         
## HiC_scaffold_64_16876561  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_64_17543009  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_64_18925356  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_64_19133050  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_64_19627769  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_64_20477250  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_64_22816677  "0/1"          "1/1"          "0/1"         
## HiC_scaffold_64_22954654  "0|1"          "1|1"          NA            
## HiC_scaffold_64_22954658  "0|1"          "1|1"          NA            
## HiC_scaffold_64_22954682  "0|1"          "0/1"          NA            
## HiC_scaffold_65_6829971   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_65_8071102   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_65_9023979   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_65_9839671   "0/0"          "0/1"          "0/0"         
## HiC_scaffold_65_10404778  "0|1"          "0/0"          NA            
## HiC_scaffold_65_11327791  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_65_11332104  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_65_34823822  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_65_51418017  "1/1"          "1/1"          NA            
## HiC_scaffold_65_54053979  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_65_57110875  "0/1"          "0/0"          "0|1"         
## HiC_scaffold_66_15615363  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_66_15672090  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_66_17903445  "0|1"          "0/0"          "1|1"         
## HiC_scaffold_66_18298629  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_66_19730676  "0/0"          "0/0"          NA            
## HiC_scaffold_66_23688768  "0/1"          "0/1"          "1/1"         
## HiC_scaffold_66_26614535  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_66_27445665  "1/1"          "0/1"          NA            
## HiC_scaffold_66_29457165  "0/1"          "0/0"          "1|1"         
## HiC_scaffold_66_29457180  "1/1"          "1/1"          "1|1"         
## HiC_scaffold_66_30116287  "1|1"          "1|1"          NA            
## HiC_scaffold_66_31603503  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_66_33261460  "1/1"          "1/1"          NA            
## HiC_scaffold_66_34138981  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_66_34139020  "1/1"          "1|1"          "0/0"         
## HiC_scaffold_66_34142862  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_67_1404390   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_67_28493665  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_67_30243885  "0/1"          "0/0"          NA            
## HiC_scaffold_67_31511806  "0/0"          "0|1"          "1|1"         
## HiC_scaffold_67_34638092  "0/1"          "0/1"          NA            
## HiC_scaffold_67_37534720  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_67_39679546  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_67_39854918  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_67_39860738  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_67_40331656  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_67_40824747  "1|1"          "1|1"          NA            
## HiC_scaffold_68_3438132   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_68_3438133   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_68_11206902  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_68_32770607  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_68_34016823  "0/0"          "0/1"          "2|2"         
## HiC_scaffold_68_34020019  "1/1"          "1/1"          NA            
## HiC_scaffold_68_40296057  "0/0"          "0|1"          "0|1"         
## HiC_scaffold_68_40296059  "0/0"          "0|1"          "0|1"         
## HiC_scaffold_68_65001879  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_69_23311147  NA             "0/0"          "0/0"         
## HiC_scaffold_69_27351303  "1/1"          "0/0"          NA            
## HiC_scaffold_69_29437208  "1|1"          "1|1"          "0|1"         
## HiC_scaffold_69_33699381  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_69_40194698  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_69_48273575  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_69_48348026  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_69_48348034  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_69_49563252  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_69_49593952  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_69_49859037  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_69_51271238  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_69_51529836  NA             "0/0"          "0/0"         
## HiC_scaffold_69_57313650  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_69_57359194  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_6951_523650  "0/0"          "0/0"          NA            
## HiC_scaffold_6951_897126  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_6951_1134482 "1|1"          "0/0"          "1|1"         
## HiC_scaffold_6951_2484960 "0/0"          "0/0"          "1/1"         
## HiC_scaffold_6951_3301273 "1|1"          "1|1"          NA            
## HiC_scaffold_6951_3314609 "0/1"          "0/0"          "1/1"         
## HiC_scaffold_6951_3945993 "0/0"          "0/0"          "1|1"         
## HiC_scaffold_6958_218293  "0/0"          "2/2"          "0|1"         
## HiC_scaffold_6958_449143  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_7_351023     "0/0"          "0/0"          "0/1"         
## HiC_scaffold_7_488024     NA             "0/0"          "1|1"         
## HiC_scaffold_7_492663     "0/0"          "1/1"          "0/1"         
## HiC_scaffold_7_693567     "0|1"          "1|1"          "0/0"         
## HiC_scaffold_7_2379128    "0/1"          "0/1"          "0/1"         
## HiC_scaffold_7_3087721    "1/1"          "1/1"          "1/1"         
## HiC_scaffold_7_3394880    "1/1"          "0/0"          "1/1"         
## HiC_scaffold_7_22247106   "0/1"          "0/1"          "0/0"         
## HiC_scaffold_70_4632611   "0/0"          "0|1"          "0|1"         
## HiC_scaffold_70_14042778  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_71_410844    "0|1"          "0/0"          "0/0"         
## HiC_scaffold_71_1753451   NA             "0/1"          "1/1"         
## HiC_scaffold_71_2283682   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_71_3439685   "0/0"          "0|1"          "1/2"         
## HiC_scaffold_71_17850462  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_71_20588314  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_71_25465351  "0|1"          "0|1"          "1|1"         
## HiC_scaffold_71_25465352  "0|1"          "0|1"          "1|1"         
## HiC_scaffold_71_26356062  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_72_11785096  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_72_17285854  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_72_23704999  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_72_24465318  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_72_30457277  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_72_32068649  "1/1"          NA             "1/1"         
## HiC_scaffold_72_35058295  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_72_36024997  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_72_37135067  "0/0"          "0/0"          NA            
## HiC_scaffold_72_38410141  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_72_38448056  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_72_41412511  "1/1"          "1/1"          NA            
## HiC_scaffold_73_2192629   "1|1"          NA             "1|1"         
## HiC_scaffold_73_2920208   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_73_4522493   "1/1"          NA             "1/1"         
## HiC_scaffold_73_4748625   "0/0"          "0/1"          NA            
## HiC_scaffold_73_5839336   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_73_9338582   "1/1"          "1/1"          NA            
## HiC_scaffold_73_27393859  "0/1"          "0/1"          "0|1"         
## HiC_scaffold_74_14235619  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_74_14515598  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_74_15116121  "0/1"          "0/0"          "0|1"         
## HiC_scaffold_74_17233613  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_74_17725340  "1|1"          "1|1"          NA            
## HiC_scaffold_74_18418135  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_74_18418138  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_74_21254425  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_74_22261065  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_74_47132519  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_74_50979096  "1/1"          "0/1"          NA            
## HiC_scaffold_74_51060549  "0/1"          "1/1"          NA            
## HiC_scaffold_74_53256803  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_74_55464169  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_74_55515512  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_74_55999260  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_74_57404902  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_74_58181927  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_74_58198600  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_74_63060195  "1/1"          NA             "0/0"         
## HiC_scaffold_75_5345466   "0/1"          "0/1"          "0/0"         
## HiC_scaffold_75_5346522   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_75_5346535   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_75_9850973   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_76_27149820  "0/1"          "0|0"          "0/0"         
## HiC_scaffold_76_31582908  NA             "0/1"          "0/1"         
## HiC_scaffold_76_31792815  NA             "0/0"          NA            
## HiC_scaffold_76_35352820  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_76_57782171  NA             "0/1"          "1/1"         
## HiC_scaffold_76_59862401  "1|1"          "0|1"          "0/0"         
## HiC_scaffold_76_61095594  "0/1"          "1|1"          "0/0"         
## HiC_scaffold_76_65496128  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_76_68965847  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_76_68966411  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_76_69823482  "0|1"          NA             "0/0"         
## HiC_scaffold_76_73343841  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_77_3598274   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_77_6982137   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_77_11021994  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_77_13608165  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_77_16888594  "1/1"          "0/1"          "0/1"         
## HiC_scaffold_77_16888623  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_77_16889448  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_77_39784685  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_77_44375866  "0/0"          "0/0"          NA            
## HiC_scaffold_77_45385370  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_78_5719919   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_78_11353297  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_78_27316392  "0/0"          "1/1"          NA            
## HiC_scaffold_78_48124809  "2/2"          "0/2"          "0/0"         
## HiC_scaffold_78_48124826  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_78_48126176  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_78_48279096  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_78_48434558  "0/1"          "0/0"          "1|1"         
## HiC_scaffold_78_49759181  "1|1"          "0|1"          "0|1"         
## HiC_scaffold_78_49759192  "1|1"          "0|1"          "0/0"         
## HiC_scaffold_78_49759215  "0/1"          "1/1"          "0/1"         
## HiC_scaffold_78_51364025  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_78_55395445  "0|1"          "0/1"          "1/1"         
## HiC_scaffold_78_59610866  NA             "0/0"          "0/1"         
## HiC_scaffold_78_62136661  "0/0"          "1/1"          NA            
## HiC_scaffold_79_1643780   "0/0"          "0|1"          "0|1"         
## HiC_scaffold_79_2519178   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_79_2858100   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_79_3922454   NA             "0/0"          "0/1"         
## HiC_scaffold_79_4127878   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_79_4543693   NA             "0/1"          "0/1"         
## HiC_scaffold_79_11507678  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_79_12618812  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_79_14185404  "1|1"          "1|1"          NA            
## HiC_scaffold_79_17120237  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_79_17120254  "0/1"          "1/1"          "0/1"         
## HiC_scaffold_79_35551507  "1|1"          "0/0"          "1/1"         
## HiC_scaffold_79_35551543  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_79_38927423  "0/0"          "0|1"          "0/0"         
## HiC_scaffold_79_42623307  "1|1"          "0|1"          "1|1"         
## HiC_scaffold_79_43179786  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_79_43180099  "0/1"          "0/1"          "0/0"         
## HiC_scaffold_79_43828078  "0|1"          "0|1"          NA            
## HiC_scaffold_79_43872513  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_79_44627215  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_79_50772769  NA             "0/0"          "1|1"         
## HiC_scaffold_79_55468575  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_79_55816114  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_79_59915784  "0/0"          "1/1"          NA            
## HiC_scaffold_79_60165298  "1|1"          "0/0"          "0|1"         
## HiC_scaffold_79_60165305  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_79_69145556  "0/0"          "0/0"          NA            
## HiC_scaffold_79_70208305  "0|1"          "0|1"          "0|1"         
## HiC_scaffold_79_73412292  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_79_73416663  "1|1"          "0/0"          "0|1"         
## HiC_scaffold_79_73416688  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_79_76863102  "0/0"          "0/1"          NA            
## HiC_scaffold_79_81279649  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_79_81499990  "1/1"          "0/0"          NA            
## HiC_scaffold_79_82319836  "1|1"          "0/0"          "0/1"         
## HiC_scaffold_79_82319849  "1|1"          "1/1"          "0/0"         
## HiC_scaffold_79_83163707  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_79_86283512  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_79_87123758  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_79_88362889  "0/0"          NA             "0/1"         
## HiC_scaffold_79_88599431  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_79_89322919  "0|1"          "0/1"          "1/1"         
## HiC_scaffold_79_89331918  "0/0"          "0/0"          NA            
## HiC_scaffold_79_91340958  "0/0"          NA             "0|1"         
## HiC_scaffold_8_13649836   "0/0"          NA             "0/0"         
## HiC_scaffold_8_13650752   "0|1"          "1|1"          "0|1"         
## HiC_scaffold_8_23818233   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_8_24123972   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_8_24230791   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_8_24588423   NA             "0/0"          "0/0"         
## HiC_scaffold_8_25348483   NA             "0/0"          "0/1"         
## HiC_scaffold_8_25421933   "0/1"          "0/1"          "0/0"         
## HiC_scaffold_8_25772942   "0/0"          "0/1"          "0/1"         
## HiC_scaffold_8_26289589   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_8_27602740   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_8_28159063   "0/1"          "1/1"          "1/1"         
## HiC_scaffold_8_30829320   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_8_31044084   "0/1"          "0/1"          "0/0"         
## HiC_scaffold_8_31415507   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_8_32594682   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_80_3617847   "1/1"          "0/1"          "1/1"         
## HiC_scaffold_80_5758183   "1|1"          NA             "1|1"         
## HiC_scaffold_80_6760006   "1|1"          "0|1"          NA            
## HiC_scaffold_80_6760037   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_80_7772622   NA             "1/1"          NA            
## HiC_scaffold_80_7919533   NA             "0/1"          "0|2"         
## HiC_scaffold_80_8110052   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_80_8193366   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_80_8625784   "1/1"          "0/1"          "0/0"         
## HiC_scaffold_80_8912846   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_80_9544102   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_80_10770701  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_80_11590146  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_80_16953653  "0/1"          "0/1"          "0/1"         
## HiC_scaffold_80_18938832  NA             "1|1"          "0/0"         
## HiC_scaffold_80_19015946  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_80_19404001  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_80_25346708  "1|1"          NA             "1|1"         
## HiC_scaffold_80_37479851  NA             "0|1"          "0/0"         
## HiC_scaffold_80_37507516  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_81_1187192   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_81_2689826   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_81_2690751   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_81_6614123   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_81_7836855   "0/0"          "0/1"          "0/0"         
## HiC_scaffold_81_10334868  "0/1"          "0/1"          "0/0"         
## HiC_scaffold_81_10458752  "0/0"          "1/1"          NA            
## HiC_scaffold_81_17515538  "0/1"          "1/1"          "1|1"         
## HiC_scaffold_81_40271282  "0/0"          "0|1"          "0/0"         
## HiC_scaffold_81_40271294  "1/1"          "0|1"          "1/1"         
## HiC_scaffold_81_41096427  "0/0"          "0|1"          "1|1"         
## HiC_scaffold_81_41096444  "0/1"          "0|1"          "1|1"         
## HiC_scaffold_81_43820595  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_81_43820732  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_81_43854278  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_81_44804862  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_81_45063428  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_81_45950590  NA             "0/1"          "0/0"         
## HiC_scaffold_81_46714752  "0|1"          "1|1"          "1|1"         
## HiC_scaffold_81_46714759  "0|1"          "1|1"          "0/1"         
## HiC_scaffold_81_47170397  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_81_47628201  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_81_48105216  "0/0"          NA             "0/0"         
## HiC_scaffold_81_48932070  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_81_54050146  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_82_5672063   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_82_8796823   "1|1"          "0/1"          "0/0"         
## HiC_scaffold_82_13450959  "1/1"          NA             "0/0"         
## HiC_scaffold_82_26144442  "0/1"          NA             "0/0"         
## HiC_scaffold_82_26147011  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_82_28907834  NA             "0/1"          "1/1"         
## HiC_scaffold_82_34413793  "0/1"          "0|1"          "1|1"         
## HiC_scaffold_82_34413800  "0/0"          "0|1"          "0/0"         
## HiC_scaffold_82_36173035  "0/1"          "0/1"          "0/0"         
## HiC_scaffold_82_40539273  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_82_41470256  NA             "0/1"          "0/1"         
## HiC_scaffold_83_23993605  "0/1"          "0/1"          "0/1"         
## HiC_scaffold_83_35035961  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_83_43423618  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_83_46920654  NA             "0/1"          "0/0"         
## HiC_scaffold_83_46934197  "0/0"          "1|1"          "0/1"         
## HiC_scaffold_84_356301    "0/1"          "0/0"          "0/0"         
## HiC_scaffold_84_5761817   "0/0"          "0/1"          "0/1"         
## HiC_scaffold_84_5769022   "1|1"          "0/1"          "0/0"         
## HiC_scaffold_84_6288130   "0/1"          "1|1"          "0/0"         
## HiC_scaffold_84_6288141   "1|1"          "1|1"          "1/1"         
## HiC_scaffold_84_6288147   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_84_7069238   NA             NA             "1|1"         
## HiC_scaffold_84_9131309   "1/1"          "0/1"          "0/0"         
## HiC_scaffold_84_10148442  "0/1"          "0/1"          "0/1"         
## HiC_scaffold_84_14659391  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_84_16302752  "0/1"          "1/1"          "2|2"         
## HiC_scaffold_84_18463244  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_84_22909575  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_84_29275266  "0/0"          NA             "0/0"         
## HiC_scaffold_84_31184610  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_84_33093169  "0/0"          "0|1"          "0/0"         
## HiC_scaffold_84_37675180  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_84_39501814  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_84_50169438  "0/0"          "0|1"          "0|1"         
## HiC_scaffold_84_50169445  "0/0"          "0|1"          "0|1"         
## HiC_scaffold_84_51231025  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_85_9792207   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_85_11784233  "0/0"          "1|1"          "0/1"         
## HiC_scaffold_85_11911022  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_85_11911142  NA             "0/1"          "0/1"         
## HiC_scaffold_85_11913828  "0/1"          "1|1"          "0|1"         
## HiC_scaffold_85_11913831  "0/1"          "0/0"          "0|1"         
## HiC_scaffold_85_12353081  NA             "1/1"          "1/1"         
## HiC_scaffold_85_12414551  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_85_13043967  "1|1"          "1|1"          "0|1"         
## HiC_scaffold_85_13221888  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_85_27008863  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_85_28992264  "1|1"          "0|1"          "0|1"         
## HiC_scaffold_85_28992268  "1|1"          "1/1"          "0|1"         
## HiC_scaffold_85_64310850  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_85_65135112  "0|2"          "0/0"          "0/0"         
## HiC_scaffold_85_65563529  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_86_1949664   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_86_5340423   "1/1"          "0/0"          "0/1"         
## HiC_scaffold_86_5483991   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_86_8928469   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_86_23727924  NA             "0/1"          "0/0"         
## HiC_scaffold_86_24825818  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_86_25333718  "0/1"          "0/1"          "0/1"         
## HiC_scaffold_86_29668168  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_86_30914243  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_86_32040320  "1|1"          "0|1"          "0|1"         
## HiC_scaffold_86_32040329  "1|1"          "0|1"          "0|1"         
## HiC_scaffold_86_32125061  "0/1"          "0/1"          "0/0"         
## HiC_scaffold_86_32144758  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_86_32153692  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_86_32534129  NA             "0/0"          "0/0"         
## HiC_scaffold_86_32605768  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_86_36355399  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_86_36357265  "1|1"          "0/0"          "1/1"         
## HiC_scaffold_87_1253643   "0/0"          "0/1"          "1/1"         
## HiC_scaffold_87_2137958   "0/0"          "0/1"          "0/1"         
## HiC_scaffold_87_3980100   "0/0"          "1/1"          "1/1"         
## HiC_scaffold_87_4395923   "0|1"          "0/1"          "1/1"         
## HiC_scaffold_87_5489328   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_87_6300441   "0/1"          "0/1"          "1/1"         
## HiC_scaffold_87_16306904  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_87_44780945  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_88_5584327   "0/1"          "0/1"          "1/1"         
## HiC_scaffold_88_7104630   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_88_7104631   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_88_7104638   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_88_7104639   "0/1"          "1|1"          "0/0"         
## HiC_scaffold_88_7104640   "0/1"          "1|1"          "1|1"         
## HiC_scaffold_88_7479340   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_88_8773607   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_88_9883678   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_88_10878718  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_88_19365116  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_88_20477349  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_88_20557885  "0/1"          "0/0"          "1|1"         
## HiC_scaffold_89_675045    "0/0"          "0/0"          "0/1"         
## HiC_scaffold_89_2815845   NA             "0/0"          NA            
## HiC_scaffold_89_2843940   "0/1"          "0/1"          "0/0"         
## HiC_scaffold_89_3018830   "1|1"          "1/1"          "1/1"         
## HiC_scaffold_89_13745506  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_89_30006907  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_89_36509388  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_89_38703735  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_89_38764895  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_89_42052609  "1/1"          "0/1"          "0/1"         
## HiC_scaffold_89_42054991  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_89_44306958  "1/1"          "0/1"          "0|1"         
## HiC_scaffold_89_44338206  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_89_45298973  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_9_3529921    NA             "1/1"          "0/0"         
## HiC_scaffold_9_5660454    "1|1"          "0/0"          "0/0"         
## HiC_scaffold_9_5660461    "1|1"          "1/1"          "1/1"         
## HiC_scaffold_9_5854070    "1/1"          "0/0"          "1/1"         
## HiC_scaffold_9_6142415    NA             "0|1"          "1|1"         
## HiC_scaffold_9_6142436    NA             "0|1"          "1|1"         
## HiC_scaffold_9_6143781    "1/1"          "0/1"          NA            
## HiC_scaffold_9_6654825    "1/1"          NA             "0/1"         
## HiC_scaffold_9_7094545    "0/1"          "1|1"          "1|1"         
## HiC_scaffold_9_7100208    "0/0"          "1|1"          NA            
## HiC_scaffold_9_7109988    "0/0"          "0/1"          "0/0"         
## HiC_scaffold_9_7111922    "0/0"          "1|1"          "0/1"         
## HiC_scaffold_9_8235781    "1/1"          "0/1"          "0/1"         
## HiC_scaffold_9_8279558    "1/1"          "1/1"          "1/1"         
## HiC_scaffold_9_15679481   "1|1"          "0/0"          "1|1"         
## HiC_scaffold_9_18082611   NA             "0/0"          "0/0"         
## HiC_scaffold_9_18090830   "1/1"          "0/0"          "0/1"         
## HiC_scaffold_9_30240531   "1/1"          "1|1"          "1/1"         
## HiC_scaffold_90_10418696  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_90_11470224  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_90_13593319  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_90_16260161  "0|1"          "1|1"          "0/0"         
## HiC_scaffold_90_22325499  "0/1"          "0/1"          "0/0"         
## HiC_scaffold_90_23574204  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_90_23609908  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_90_23623078  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_90_23626883  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_90_23812663  "1/1"          NA             "1/1"         
## HiC_scaffold_90_25939283  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_90_25985714  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_90_30751272  NA             "0/0"          "0/1"         
## HiC_scaffold_90_31232025  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_90_31245699  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_90_31527975  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_90_31546172  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_90_38511996  "0/0"          "0|1"          "0|1"         
## HiC_scaffold_90_38511999  "0/0"          "0|1"          "0|1"         
## HiC_scaffold_90_38517279  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_90_40624104  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_91_5644765   "1|1"          "0/0"          "1|1"         
## HiC_scaffold_91_5867214   "0|1"          "0|1"          NA            
## HiC_scaffold_91_5867226   "0|1"          "0|1"          NA            
## HiC_scaffold_91_7704263   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_91_7871360   "1/1"          "0/1"          "0/1"         
## HiC_scaffold_91_8538014   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_91_13230485  "0|1"          "1|1"          "1|1"         
## HiC_scaffold_91_28696118  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_91_28696625  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_91_42177482  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_91_46813640  NA             "0|1"          "2|2"         
## HiC_scaffold_92_23783035  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_92_23783036  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_92_24712793  "0/0"          "0/0"          NA            
## HiC_scaffold_92_28698258  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_92_40691582  "0/0"          "0/0"          NA            
## HiC_scaffold_92_43967712  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_92_47147572  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_92_49042714  "1|1"          "0|1"          "0|1"         
## HiC_scaffold_92_49042715  "1|1"          "0|1"          "0|1"         
## HiC_scaffold_92_53634002  "0/1"          NA             "1/1"         
## HiC_scaffold_92_58211868  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_92_60114155  NA             NA             "0/0"         
## HiC_scaffold_92_63603483  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_92_64797225  "0/0"          "0/2"          "0/0"         
## HiC_scaffold_92_68367476  "0/0"          "0|2"          "0/0"         
## HiC_scaffold_93_1912167   "0/1"          "0/1"          "0/0"         
## HiC_scaffold_93_2485978   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_93_3227638   "0/0"          "0/1"          "0/0"         
## HiC_scaffold_93_3227641   "1|1"          "0|1"          "1|1"         
## HiC_scaffold_93_13971208  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_93_13987080  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_93_21125468  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_93_21845293  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_93_21845310  "1|1"          "0/0"          "0|1"         
## HiC_scaffold_93_21846342  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_93_21846356  "0/0"          "0/0"          NA            
## HiC_scaffold_93_22589723  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_93_22619278  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_93_22631258  "1|1"          "1|1"          "0|1"         
## HiC_scaffold_93_22631266  "1|1"          "1|1"          "0|1"         
## HiC_scaffold_94_3110102   "0/1"          "0/0"          NA            
## HiC_scaffold_94_3205919   "1|1"          "1/1"          "0/1"         
## HiC_scaffold_94_9023846   "0/1"          "0/1"          "0/1"         
## HiC_scaffold_94_11572820  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_94_12368532  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_94_42179418  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_94_42179519  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_94_51646206  "0/0"          "0/2"          "0/0"         
## HiC_scaffold_94_52781289  "1/1"          "0/0"          NA            
## HiC_scaffold_94_53790035  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_94_53792738  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_94_56768905  "0/0"          "0|1"          "1|1"         
## HiC_scaffold_946_81276    "1/1"          "1/1"          NA            
## HiC_scaffold_95_3189690   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_95_4397298   "1/1"          "1|1"          "1|1"         
## HiC_scaffold_95_9469157   "0|1"          "0|1"          "1|1"         
## HiC_scaffold_95_10641411  "0/1"          NA             "0/0"         
## HiC_scaffold_95_10949821  "0/1"          NA             "1/1"         
## HiC_scaffold_95_12993394  "1|1"          "0|1"          "1|1"         
## HiC_scaffold_95_15515793  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_95_15608785  "0/0"          "1|1"          "0|1"         
## HiC_scaffold_95_15609137  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_95_16295316  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_95_22656165  "0/0"          "1|1"          "0|1"         
## HiC_scaffold_95_25885727  "1/1"          "1/1"          NA            
## HiC_scaffold_96_10460019  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_96_27155785  "1/1"          "1/1"          NA            
## HiC_scaffold_96_37939434  "0|1"          "0|1"          "0/1"         
## HiC_scaffold_96_51115048  NA             "0/0"          "1/1"         
## HiC_scaffold_96_51116511  "0/0"          NA             "0/1"         
## HiC_scaffold_96_51915040  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_96_52681287  "0/0"          "0/0"          NA            
## HiC_scaffold_96_53276519  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_97_1736926   "0|1"          "0/0"          "1|1"         
## HiC_scaffold_97_1736994   "1|1"          "0/0"          "1|1"         
## HiC_scaffold_97_3863543   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_97_4200445   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_97_4799162   NA             "0/1"          "1/1"         
## HiC_scaffold_97_5027892   "1/1"          "0/1"          "1/1"         
## HiC_scaffold_97_8007933   "0/0"          "0|1"          "1|1"         
## HiC_scaffold_97_17997210  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_97_18604647  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_97_20239636  NA             "1/1"          "0/0"         
## HiC_scaffold_98_15154096  "0/1"          "0|1"          "0/0"         
## HiC_scaffold_98_22342667  "0|1"          "1/1"          "0/0"         
## HiC_scaffold_98_22634293  NA             "1|1"          "1|1"         
## HiC_scaffold_98_22634294  NA             "1|1"          "1|1"         
## HiC_scaffold_98_22721138  "1|1"          "1|1"          "1/1"         
## HiC_scaffold_98_22869378  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_98_24108405  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_98_27359592  "1|1"          "0/1"          "1|1"         
## HiC_scaffold_98_28549834  NA             "0/0"          "0/0"         
## HiC_scaffold_98_28867520  "1/1"          NA             "1|1"         
## HiC_scaffold_98_28867524  "0|2"          NA             "1|1"         
## HiC_scaffold_98_29431717  "0/1"          "0/0"          "1|1"         
## HiC_scaffold_98_29675109  "0/1"          NA             "0/1"         
## HiC_scaffold_99_1163244   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_99_1451611   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_99_2021961   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_99_5134392   NA             "0/1"          "0/0"         
## HiC_scaffold_99_5239109   "0/1"          "1/1"          "1/1"         
## HiC_scaffold_99_6917738   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_99_11221970  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_99_25982503  "0/1"          "1/1"          "1/1"         
##                           Tank_15_Crab_1 Tank_15_Crab_2 Tank_15_Crab_3
## HiC_scaffold_1_2523394    "1/1"          "0/1"          "0/0"         
## HiC_scaffold_1_2542157    "0/1"          NA             "0/0"         
## HiC_scaffold_1_2647806    "1/1"          "1/1"          "0/0"         
## HiC_scaffold_1_2970226    "0/0"          "1|1"          "0/0"         
## HiC_scaffold_1_3329447    "0/0"          "0/0"          "0/0"         
## HiC_scaffold_1_3795100    "0|1"          "0/0"          "1|1"         
## HiC_scaffold_10_2221345   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_10_2299490   "1|1"          NA             "0/0"         
## HiC_scaffold_10_2565301   "0/0"          NA             "0/0"         
## HiC_scaffold_10_3864355   "0/1"          "1/1"          "0/1"         
## HiC_scaffold_10_4319900   "1|1"          "0|1"          "0/0"         
## HiC_scaffold_10_4319907   "1|1"          "0|1"          "0/0"         
## HiC_scaffold_10_5404579   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_10_5843373   NA             "0/0"          "0/0"         
## HiC_scaffold_100_854947   "0/0"          NA             "0/0"         
## HiC_scaffold_100_1070817  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_100_2002094  "0|1"          "0/0"          NA            
## HiC_scaffold_100_2002097  "0|1"          "0/0"          NA            
## HiC_scaffold_100_2010331  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_100_5186498  NA             "1/1"          "1/1"         
## HiC_scaffold_100_5828477  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_100_6470419  "0/0"          "1|1"          "0|1"         
## HiC_scaffold_100_6739225  NA             "0/0"          "0/0"         
## HiC_scaffold_100_6739258  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_100_6739264  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_100_6907177  "0/0"          "1/1"          "1|1"         
## HiC_scaffold_100_8384481  "0|1"          "0/0"          "1|1"         
## HiC_scaffold_100_8384495  "0|1"          "0/0"          "1|1"         
## HiC_scaffold_100_9451470  "1/1"          NA             "0/2"         
## HiC_scaffold_100_10464574 "0/0"          "1/1"          "0/0"         
## HiC_scaffold_100_11934792 "0/0"          "0/0"          "1/1"         
## HiC_scaffold_100_11980177 "1|1"          "1/1"          "1/1"         
## HiC_scaffold_100_18465760 "0|1"          "0/0"          "0/0"         
## HiC_scaffold_100_18465762 "0|1"          "0/0"          "0/0"         
## HiC_scaffold_100_18466205 "2/2"          "0/0"          "0/0"         
## HiC_scaffold_100_31738115 "0/0"          "1/1"          "1/1"         
## HiC_scaffold_100_44227362 "1/1"          "0/0"          "0/0"         
## HiC_scaffold_101_12808961 "0/0"          "1|1"          "0/0"         
## HiC_scaffold_101_13897149 "0/0"          "0/1"          "1/1"         
## HiC_scaffold_101_18337279 "1/1"          "0/0"          "1/1"         
## HiC_scaffold_101_20800167 NA             "0/1"          "1/1"         
## HiC_scaffold_102_2260041  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_102_8734519  "0/1"          NA             "1|1"         
## HiC_scaffold_102_10233999 "1|1"          NA             NA            
## HiC_scaffold_102_11446042 "0/0"          "0/0"          "0/1"         
## HiC_scaffold_102_15918694 NA             "0/1"          "0/0"         
## HiC_scaffold_102_15935667 "1|1"          "0/0"          "0/1"         
## HiC_scaffold_102_17442643 "1/1"          NA             NA            
## HiC_scaffold_102_17608969 NA             "0/0"          "0/0"         
## HiC_scaffold_102_20180185 "0/1"          "0/0"          "0/1"         
## HiC_scaffold_102_24788723 "0/0"          NA             "0/0"         
## HiC_scaffold_102_25423729 "1|1"          NA             "1|1"         
## HiC_scaffold_102_39755142 "1/1"          NA             "1/1"         
## HiC_scaffold_102_52046978 "0/0"          "1/1"          NA            
## HiC_scaffold_1027_34152   "1/1"          "0/0"          "0/1"         
## HiC_scaffold_103_601715   "0/0"          "1/1"          "0/1"         
## HiC_scaffold_103_2891384  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_103_8191270  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_103_9521272  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_103_14768909 "1|1"          NA             "1|1"         
## HiC_scaffold_103_19312119 "0|1"          "1|1"          "1|1"         
## HiC_scaffold_103_21284866 "0/0"          "0/0"          "0/0"         
## HiC_scaffold_103_31428453 "0/0"          NA             "0/0"         
## HiC_scaffold_103_42567396 "0/1"          "0/0"          "0/1"         
## HiC_scaffold_103_45921571 NA             "0|1"          "0|1"         
## HiC_scaffold_103_45921573 NA             "0|1"          "0|1"         
## HiC_scaffold_103_49592022 "0/1"          "0/1"          NA            
## HiC_scaffold_103_49620132 "1|1"          "0/0"          "0/1"         
## HiC_scaffold_103_50440915 "0/0"          "0/1"          "0/0"         
## HiC_scaffold_103_51944137 "1/1"          "0/1"          "1/1"         
## HiC_scaffold_103_54308582 "0/1"          NA             "0/0"         
## HiC_scaffold_103_54424067 "1|1"          "0/0"          "1|1"         
## HiC_scaffold_103_56932900 "1/1"          "1/1"          NA            
## HiC_scaffold_103_57470264 NA             "1|1"          "1|1"         
## HiC_scaffold_104_7771140  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_104_9103028  "0/0"          "0|1"          "0/0"         
## HiC_scaffold_104_10633168 NA             "0/0"          "0/0"         
## HiC_scaffold_104_18917031 "0/0"          NA             "0/0"         
## HiC_scaffold_104_20851902 "0/0"          "1/1"          "0/0"         
## HiC_scaffold_104_24451803 "0/1"          "0/1"          "0/0"         
## HiC_scaffold_104_28597688 "1/1"          NA             "0/1"         
## HiC_scaffold_104_40927999 "1/1"          "0/0"          "0/0"         
## HiC_scaffold_104_46490074 "0/0"          NA             "1/1"         
## HiC_scaffold_104_49759053 "0/0"          "1/1"          "1/1"         
## HiC_scaffold_104_57267896 "1/1"          "0/0"          "0/1"         
## HiC_scaffold_104_62570010 "0/0"          "1/1"          "0/1"         
## HiC_scaffold_11_32804173  "0/0"          NA             "1/1"         
## HiC_scaffold_11_34516508  "0/0"          "1/1"          NA            
## HiC_scaffold_11_35332996  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_11_35904027  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_11_41539793  "1|1"          "1|1"          "1/1"         
## HiC_scaffold_11_41604080  "1|1"          "1/1"          "1|1"         
## HiC_scaffold_11_42855323  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_11_45339409  "0/0"          "1|1"          "0/1"         
## HiC_scaffold_11_45339410  "0/0"          "1|1"          "0/1"         
## HiC_scaffold_11_47544035  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_12_7515164   "0/0"          "0/1"          "0/1"         
## HiC_scaffold_12_12640100  "0/1"          NA             "1/1"         
## HiC_scaffold_12_12826705  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_12_14899285  NA             "0/0"          "0/1"         
## HiC_scaffold_12_17465672  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_12_22770710  "0/1"          "0/0"          "1|1"         
## HiC_scaffold_12_32318964  NA             "1|1"          "1|1"         
## HiC_scaffold_12_35136373  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_12_40687860  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_13_2938168   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_13_20350974  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_13_27759554  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_13_28146828  "0/0"          "0/0"          NA            
## HiC_scaffold_13_28146830  "0/0"          "0/0"          NA            
## HiC_scaffold_13_28925343  NA             NA             "1/1"         
## HiC_scaffold_13_31913129  "1/1"          "0/0"          NA            
## HiC_scaffold_13_32078924  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_13_33864805  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_13_34892542  "1/1"          NA             "1/1"         
## HiC_scaffold_13_34893103  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_13_35762551  "0|1"          "0/0"          "0|1"         
## HiC_scaffold_13_35881745  "1/1"          NA             "0/1"         
## HiC_scaffold_13_35881749  "0/0"          NA             "0/1"         
## HiC_scaffold_14_3843214   NA             "0/0"          "1/1"         
## HiC_scaffold_14_25884262  "2|2"          "0/0"          "0/2"         
## HiC_scaffold_14_27050415  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_14_27118495  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_14_27277222  "0|2"          "0/0"          "0/0"         
## HiC_scaffold_14_29215814  "0/0"          "0/1"          "1|1"         
## HiC_scaffold_15_2460398   "0/0"          "0/0"          "0|1"         
## HiC_scaffold_15_2462980   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_15_2467289   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_15_5669141   "1/1"          "1/1"          "1|1"         
## HiC_scaffold_15_13700694  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_15_17825275  "1|1"          "0|1"          "0|1"         
## HiC_scaffold_15_19938475  NA             "0/0"          "1/1"         
## HiC_scaffold_15_23865956  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_15_28837774  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_15_28837810  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_15_28837823  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_15_28837835  "1/1"          "1|1"          "0|1"         
## HiC_scaffold_15_28837841  "0/0"          "1|1"          "0|1"         
## HiC_scaffold_15_28837854  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_15_34827832  "0/0"          NA             "0/0"         
## HiC_scaffold_15_34893807  "0/0"          "1/1"          NA            
## HiC_scaffold_15_35327348  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_15_42161112  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_15_42164926  "1|1"          "1|1"          "0|1"         
## HiC_scaffold_15_42164946  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_15_46289572  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_15_50591576  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_15_50759128  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_15_51188336  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_15_54726640  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_15_54788235  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_15_56162375  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_15_61091106  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_15_61464359  "1|1"          NA             "1/1"         
## HiC_scaffold_15_61510386  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_15_62309788  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_15_62309793  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_15_62771254  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_15_63493927  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_15_64997502  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_15_65007865  "1/1"          "0|1"          "1|1"         
## HiC_scaffold_15_65007879  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_15_66038529  "0/0"          NA             "0/1"         
## HiC_scaffold_15_69811281  "0/1"          NA             NA            
## HiC_scaffold_16_14205925  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_16_30404047  "0/0"          "0/1"          NA            
## HiC_scaffold_16_57413288  "0/0"          NA             "0/0"         
## HiC_scaffold_16_63687578  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_16_74138787  "1/1"          NA             "0/0"         
## HiC_scaffold_16_74140106  NA             "1/1"          "0/0"         
## HiC_scaffold_16_76276015  NA             "0/0"          "0/0"         
## HiC_scaffold_17_11390873  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_17_12551128  "1/1"          NA             "1/1"         
## HiC_scaffold_17_16615612  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_17_18838093  NA             "0/0"          "0/0"         
## HiC_scaffold_17_22801072  "1/1"          NA             "0/1"         
## HiC_scaffold_17_23788599  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_17_29383895  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_17_29618771  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_17_29976139  NA             "0/0"          NA            
## HiC_scaffold_17_31107213  "1/1"          "1/1"          NA            
## HiC_scaffold_17_32493792  NA             "0/0"          "0/0"         
## HiC_scaffold_17_33732050  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_17_33801314  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_17_34081889  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_18_227565    "0/0"          "1/1"          "0/1"         
## HiC_scaffold_18_1213486   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_18_1701312   "0/0"          "0/0"          NA            
## HiC_scaffold_18_3506437   "0/0"          "1/1"          "0/1"         
## HiC_scaffold_18_6304978   "0/1"          "0/0"          "1/1"         
## HiC_scaffold_18_6351493   "0/0"          "1/1"          "1/1"         
## HiC_scaffold_18_6358009   "0|1"          "0/0"          "1/1"         
## HiC_scaffold_18_10770701  "0/0"          NA             "0/1"         
## HiC_scaffold_18_13342858  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_18_20045832  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_18_22682683  NA             NA             "0/0"         
## HiC_scaffold_18_26337790  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_18_48929148  NA             "0/0"          "1|1"         
## HiC_scaffold_18_51490626  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_18_53723137  "0/0"          "1|1"          "0/1"         
## HiC_scaffold_18_54496637  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_18_55294388  NA             "0|1"          "0|1"         
## HiC_scaffold_19_279726    "0/1"          "1/1"          "0/0"         
## HiC_scaffold_19_6426572   "1/1"          NA             "0/0"         
## HiC_scaffold_19_6575887   NA             "1|1"          "1|1"         
## HiC_scaffold_19_7755254   NA             "0/0"          "1/1"         
## HiC_scaffold_19_9301421   "0/0"          NA             "1/1"         
## HiC_scaffold_19_9357388   "0/0"          NA             "0/0"         
## HiC_scaffold_19_9778841   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_19_10928976  NA             "0/0"          "0|1"         
## HiC_scaffold_19_10928980  NA             "0/0"          "0|1"         
## HiC_scaffold_19_10928982  NA             "1|1"          "0|1"         
## HiC_scaffold_19_11106347  "1|1"          NA             "1|1"         
## HiC_scaffold_19_11590139  "1/1"          "0/0"          NA            
## HiC_scaffold_19_11665300  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_19_14793640  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_19_22112743  "0/1"          NA             "0/1"         
## HiC_scaffold_19_25473671  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_19_25473692  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_19_28110829  "0/1"          "1|1"          "1|1"         
## HiC_scaffold_19_28465002  "1|1"          "1/1"          "1/1"         
## HiC_scaffold_19_28465167  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_19_30106869  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_19_52538858  "1|1"          "1/1"          "0/0"         
## HiC_scaffold_19_52596196  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_19_53482993  NA             "0/1"          "0/1"         
## HiC_scaffold_19_54312637  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_19_59345841  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_2_3296144    "1|1"          "1|1"          "1|1"         
## HiC_scaffold_2_3418589    "0/0"          "1/1"          "1/1"         
## HiC_scaffold_2_3864060    "1|1"          "1/1"          "0/1"         
## HiC_scaffold_2_4104755    "0/0"          "0/0"          "0|2"         
## HiC_scaffold_2_4104758    "0/0"          "0/0"          "0|2"         
## HiC_scaffold_2_8316721    "0/1"          "0/0"          "0/0"         
## HiC_scaffold_2_9098999    "0/1"          "0/0"          "0/0"         
## HiC_scaffold_2_10457537   NA             "0/0"          "0/0"         
## HiC_scaffold_2_19048125   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_2_21748201   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_2_33187764   "0|1"          "0/0"          "0/0"         
## HiC_scaffold_2_33187770   "0|1"          "0/0"          "0/0"         
## HiC_scaffold_2_33187959   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_2_41603929   "0/0"          "0/1"          "1/1"         
## HiC_scaffold_2_52233191   "0|1"          NA             "0/1"         
## HiC_scaffold_2_52400748   "0|1"          "1/1"          "1/1"         
## HiC_scaffold_2_52403793   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_2_52799130   "0/1"          "1/1"          "0/1"         
## HiC_scaffold_20_10332897  "0/1"          "0|0"          "0/1"         
## HiC_scaffold_20_17198418  "1|1"          NA             "0/0"         
## HiC_scaffold_20_17915398  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_20_18872955  "0/1"          "0/1"          "0/0"         
## HiC_scaffold_20_19055301  "1/1"          NA             "1/1"         
## HiC_scaffold_20_19150094  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_20_20651022  "1|1"          "0/1"          "1|1"         
## HiC_scaffold_20_22651296  "0/0"          NA             "1/1"         
## HiC_scaffold_21_2009156   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_21_2435648   "0/0"          "0/1"          "1/1"         
## HiC_scaffold_21_7164210   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_21_9786512   "0/1"          "0/0"          "1/1"         
## HiC_scaffold_21_12424922  "0|1"          "1/1"          "1/1"         
## HiC_scaffold_21_17966833  "1/1"          "1/1"          NA            
## HiC_scaffold_21_19025429  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_21_20058318  "0/0"          NA             "1/1"         
## HiC_scaffold_21_20562855  NA             "0/0"          NA            
## HiC_scaffold_21_20661860  NA             NA             "0/0"         
## HiC_scaffold_21_20895395  "0/0"          "0|1"          "0|1"         
## HiC_scaffold_21_21158811  "1|1"          "2|2"          "1|1"         
## HiC_scaffold_21_22250857  "1/1"          "1/1"          "0|1"         
## HiC_scaffold_21_22250866  NA             "1/1"          "0|1"         
## HiC_scaffold_21_22257737  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_21_22644667  "0/0"          NA             "1|1"         
## HiC_scaffold_21_22644673  "0/0"          NA             "1|1"         
## HiC_scaffold_21_22666888  NA             "0/0"          NA            
## HiC_scaffold_21_23905416  NA             "0/0"          "1|1"         
## HiC_scaffold_21_23981651  "0/0"          NA             "1|1"         
## HiC_scaffold_21_24287068  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_21_30798434  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_21_35006232  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_21_35779294  "1/1"          "0/1"          "0/1"         
## HiC_scaffold_22_124910    "0/0"          NA             NA            
## HiC_scaffold_22_751023    NA             "1|1"          "0/1"         
## HiC_scaffold_22_1042644   "1|1"          "0/1"          "1|1"         
## HiC_scaffold_22_1044708   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_22_2174911   "1|1"          "0/0"          "1/1"         
## HiC_scaffold_22_3431122   "0/1"          "0/0"          "1|1"         
## HiC_scaffold_22_3446787   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_22_3451756   "0/0"          "0/1"          "1/1"         
## HiC_scaffold_22_3720435   "1/1"          NA             "1/1"         
## HiC_scaffold_22_4065466   "0/0"          NA             "0/0"         
## HiC_scaffold_22_4739889   "1|1"          NA             "1|1"         
## HiC_scaffold_22_4918263   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_22_5750008   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_22_5769942   "0/0"          "0/0"          NA            
## HiC_scaffold_22_28264522  "1|1"          "1|1"          NA            
## HiC_scaffold_22_28265115  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_22_29205851  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_22_29822340  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_22_30797357  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_22_32042610  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_23_11215327  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_23_27081333  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_23_28672255  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_23_29218828  "1|1"          "0|1"          "1/1"         
## HiC_scaffold_23_32528768  "1|1"          "0/0"          NA            
## HiC_scaffold_23_32669383  "1/1"          NA             NA            
## HiC_scaffold_23_33199663  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_23_33245843  "0/0"          "0/0"          NA            
## HiC_scaffold_23_40824545  NA             "0/0"          "1|1"         
## HiC_scaffold_23_41504669  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_24_16622654  "1|1"          NA             "0/1"         
## HiC_scaffold_24_16622681  "1|1"          NA             "0/1"         
## HiC_scaffold_24_19851560  NA             "1/1"          NA            
## HiC_scaffold_24_20590563  "1/1"          NA             "1/1"         
## HiC_scaffold_24_27745754  "0/1"          "0/1"          NA            
## HiC_scaffold_24_28763699  "1|1"          "1|1"          "0/1"         
## HiC_scaffold_24_28763703  "1|1"          "0/1"          "1|1"         
## HiC_scaffold_25_4135969   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_25_4201677   NA             "0/1"          "0/1"         
## HiC_scaffold_25_5872831   "0/0"          NA             "0/1"         
## HiC_scaffold_25_6879627   "1/1"          "0/1"          "0/0"         
## HiC_scaffold_25_8172813   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_25_9969507   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_25_10691336  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_25_21286462  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_26_4086662   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_26_7539671   "0/1"          NA             "1|1"         
## HiC_scaffold_26_8348511   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_26_9043748   "0/0"          NA             "0/0"         
## HiC_scaffold_26_9045655   "0/0"          NA             "0/0"         
## HiC_scaffold_26_11253181  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_26_17828344  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_26_17932520  NA             NA             "1/1"         
## HiC_scaffold_26_17941459  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_26_17960877  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_26_18284041  "1|1"          "0/0"          "0/1"         
## HiC_scaffold_26_18288701  "1|1"          NA             "1|1"         
## HiC_scaffold_26_18294422  NA             "1|1"          "1/1"         
## HiC_scaffold_26_21307365  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_26_22159924  NA             NA             "1/1"         
## HiC_scaffold_26_22161535  NA             "0/0"          "1/1"         
## HiC_scaffold_26_24794176  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_26_28538113  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_26_29031357  "1/1"          "1|1"          "1/1"         
## HiC_scaffold_26_29163462  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_26_42631018  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_26_42634814  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_26_43483190  NA             NA             "0/1"         
## HiC_scaffold_26_49955889  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_26_58342510  NA             "0|1"          "1|1"         
## HiC_scaffold_27_1496120   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_27_1947057   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_27_2359058   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_27_2699645   "1/1"          "0/1"          "0/0"         
## HiC_scaffold_27_4425475   "0/0"          "0/0"          "0|1"         
## HiC_scaffold_27_7539469   "0/0"          "2|2"          "1|1"         
## HiC_scaffold_27_7777122   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_27_16657070  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_27_24539255  "0|1"          "0/0"          "1|1"         
## HiC_scaffold_27_34642359  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_27_34647277  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_27_35380535  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_27_35383230  "1|1"          NA             "0/0"         
## HiC_scaffold_28_21261390  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_28_24490442  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_28_25601927  "1/1"          NA             "0/0"         
## HiC_scaffold_28_31793968  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_28_32126687  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_28_34779518  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_28_36042491  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_28_36692361  "0/1"          NA             "0/0"         
## HiC_scaffold_28_38672993  "0/1"          "0/1"          "0/0"         
## HiC_scaffold_28_39640526  NA             "1/1"          "0/1"         
## HiC_scaffold_28_40169242  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_28_41059640  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_28_42514830  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_28_42601570  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_28_42601585  "0/0"          "0/1"          NA            
## HiC_scaffold_28_43018803  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_28_43036165  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_29_344317    "1/1"          "1/1"          "1/1"         
## HiC_scaffold_29_3811176   "0/1"          "0/1"          "0/0"         
## HiC_scaffold_29_6073993   "1/1"          "0|1"          "0/0"         
## HiC_scaffold_29_6415222   "0/0"          "0/0"          "0/2"         
## HiC_scaffold_29_8224424   NA             NA             "0/0"         
## HiC_scaffold_29_11153624  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_29_11153712  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_29_11167966  "0/1"          "0/0"          NA            
## HiC_scaffold_29_11491468  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_29_12103558  NA             NA             "1/1"         
## HiC_scaffold_29_14279322  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_29_14913907  "0|1"          "0/0"          "0|1"         
## HiC_scaffold_29_16378276  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_29_20635937  "0/1"          "0/1"          "1/1"         
## HiC_scaffold_29_20636787  "1/1"          NA             "0/1"         
## HiC_scaffold_29_22560215  "1|1"          "0/0"          "1/1"         
## HiC_scaffold_29_22561144  "0/1"          NA             "0/0"         
## HiC_scaffold_29_24017849  "0/0"          NA             "1/1"         
## HiC_scaffold_29_31603590  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_3_21670751   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_3_24747014   "0/0"          NA             "0/1"         
## HiC_scaffold_3_27861792   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_3_28057869   "1/1"          "0/0"          "0/1"         
## HiC_scaffold_3_28441436   "1/1"          "1/1"          "0/1"         
## HiC_scaffold_3_28694380   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_3_31361023   "0/0"          "1/1"          "0/1"         
## HiC_scaffold_3_31960572   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_3_32157169   NA             "0/0"          "0/0"         
## HiC_scaffold_3_32159152   "0/1"          "0/1"          "0/1"         
## HiC_scaffold_3_34124237   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_30_14199802  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_30_16052331  "1|1"          "1/1"          "1/1"         
## HiC_scaffold_30_19914075  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_30_20688783  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_30_21446076  "0/0"          "0/0"          "0/2"         
## HiC_scaffold_30_21598563  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_30_22155728  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_31_687411    "0/0"          "0/1"          "1/1"         
## HiC_scaffold_31_3224722   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_31_3574854   "0/0"          NA             NA            
## HiC_scaffold_31_5899551   "1/1"          "1|1"          "0/0"         
## HiC_scaffold_31_5911491   "0/0"          NA             "0/1"         
## HiC_scaffold_31_6297680   "0/1"          "0/1"          "0/0"         
## HiC_scaffold_31_12394016  "0|1"          "0/0"          "1|1"         
## HiC_scaffold_31_12394040  "0/1"          "1|1"          "0/0"         
## HiC_scaffold_31_18612650  "1/1"          NA             "0/0"         
## HiC_scaffold_32_4446859   "1/1"          "0/0"          NA            
## HiC_scaffold_32_5274796   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_32_5275108   "0/1"          "1/1"          "1/1"         
## HiC_scaffold_32_5282358   "0/0"          "0/1"          "0/1"         
## HiC_scaffold_32_5450203   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_32_44200178  "0/1"          NA             "1/1"         
## HiC_scaffold_33_638523    "0/1"          "0/1"          "1/1"         
## HiC_scaffold_33_44489563  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_33_44489988  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_33_47080180  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_33_47495907  NA             NA             "0/0"         
## HiC_scaffold_33_51865876  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_34_1096982   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_34_6091943   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_34_6100160   "1|1"          NA             NA            
## HiC_scaffold_34_24368584  "1/1"          "1/1"          NA            
## HiC_scaffold_35_3233120   "0/0"          "1/1"          "0/1"         
## HiC_scaffold_35_3253574   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_35_5512296   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_35_15114788  "0/0"          "0/0"          NA            
## HiC_scaffold_35_21214090  "0/0"          NA             "1/1"         
## HiC_scaffold_35_21462564  NA             "1/1"          "1/1"         
## HiC_scaffold_35_22746783  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_35_22747085  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_35_23059580  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_35_23158882  "0/1"          "1/1"          "1|1"         
## HiC_scaffold_35_23261143  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_35_24403602  NA             "1/1"          "0/0"         
## HiC_scaffold_35_24403620  "0/0"          "1|1"          "1/1"         
## HiC_scaffold_35_24993986  "0|1"          "1/1"          "1/1"         
## HiC_scaffold_35_24993998  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_36_1538038   "1/1"          "1/1"          NA            
## HiC_scaffold_36_2464728   "0|1"          "0|1"          "0/1"         
## HiC_scaffold_36_5489050   "0/1"          "0/1"          "0/0"         
## HiC_scaffold_36_9673981   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_36_9674127   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_36_9674756   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_36_9676329   "1/1"          NA             "1/1"         
## HiC_scaffold_36_12304516  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_36_12515555  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_36_13092647  "0/1"          NA             "0/0"         
## HiC_scaffold_36_13766994  "1/1"          "1/1"          NA            
## HiC_scaffold_36_14567741  "1/1"          NA             "1/1"         
## HiC_scaffold_36_15530578  "1|1"          "1|1"          "0/1"         
## HiC_scaffold_37_679894    "1/1"          "1/1"          "1/1"         
## HiC_scaffold_37_916693    "0/0"          NA             "0/0"         
## HiC_scaffold_37_928146    "0/1"          "0/0"          "0/0"         
## HiC_scaffold_37_1256768   "0/0"          "0|1"          "0/0"         
## HiC_scaffold_37_1270034   "1/1"          "0/0"          NA            
## HiC_scaffold_37_1770997   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_37_1798298   NA             NA             "0/0"         
## HiC_scaffold_37_2010342   "1|1"          "1|1"          NA            
## HiC_scaffold_37_2141526   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_37_3952190   "0/0"          NA             "0/0"         
## HiC_scaffold_37_3952215   "0/0"          NA             NA            
## HiC_scaffold_37_9915037   NA             "0/0"          "0/0"         
## HiC_scaffold_38_5383430   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_38_5668363   NA             NA             "0/1"         
## HiC_scaffold_38_5879849   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_38_5880155   NA             "0/0"          "1/1"         
## HiC_scaffold_38_10612790  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_38_11940240  "0/1"          "0|2"          "0|1"         
## HiC_scaffold_38_12878826  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_38_12959698  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_38_13087368  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_38_13480648  "1|1"          NA             "0|1"         
## HiC_scaffold_38_13965243  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_38_14089955  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_38_14408072  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_38_14931216  NA             "1/1"          "0/0"         
## HiC_scaffold_38_14978356  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_38_14978367  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_38_15292863  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_38_15306135  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_38_16077506  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_38_16138965  "1/1"          NA             "0/0"         
## HiC_scaffold_38_16226040  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_39_1393769   NA             "0/0"          "0/0"         
## HiC_scaffold_39_2014970   "0/0"          "1|1"          "0/1"         
## HiC_scaffold_39_2014982   "0/0"          "1|1"          "0|1"         
## HiC_scaffold_39_2014985   "0/0"          "1|1"          "0|1"         
## HiC_scaffold_39_2426443   "1/1"          "0/0"          "0|1"         
## HiC_scaffold_39_2485330   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_39_3350506   "1|1"          "0/0"          "0/1"         
## HiC_scaffold_39_5897388   NA             NA             "0|1"         
## HiC_scaffold_39_17631133  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_4_12107187   "1/1"          "0/0"          "0/1"         
## HiC_scaffold_4_18241670   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_4_18241723   NA             "1|1"          "1|1"         
## HiC_scaffold_4_22418566   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_4_27899990   "0/0"          "1/1"          "0/1"         
## HiC_scaffold_4_35575118   "1/1"          "1/1"          "0/1"         
## HiC_scaffold_4_38000967   "1/1"          "1/1"          "0/1"         
## HiC_scaffold_4_50654021   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_40_2243415   "1/1"          NA             "0/0"         
## HiC_scaffold_40_3000572   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_40_3014177   "0/1"          "1/1"          "1|1"         
## HiC_scaffold_40_3027900   NA             "0/0"          "1/1"         
## HiC_scaffold_40_3143834   NA             "0/0"          "1/1"         
## HiC_scaffold_40_3843942   "2|2"          "0/0"          "0/0"         
## HiC_scaffold_40_3847620   NA             "0/0"          NA            
## HiC_scaffold_40_3891007   NA             "0/0"          "0/0"         
## HiC_scaffold_40_3920667   "2/2"          "2/2"          NA            
## HiC_scaffold_40_4177963   "1/1"          "0/1"          "0/0"         
## HiC_scaffold_40_4819107   "0/1"          "0/1"          "1/1"         
## HiC_scaffold_40_4819834   "1|1"          "0/0"          "1|1"         
## HiC_scaffold_40_5788271   "0/0"          "1/1"          "1/1"         
## HiC_scaffold_40_5965269   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_40_6204154   NA             "1/1"          "0/0"         
## HiC_scaffold_40_8387917   "0/1"          "0/0"          "1/1"         
## HiC_scaffold_41_3235384   "0/0"          NA             "0/0"         
## HiC_scaffold_41_3583000   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_41_5334504   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_41_5387631   "1|1"          "1|1"          "0/1"         
## HiC_scaffold_41_6423426   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_41_14359947  "0/0"          NA             "0/0"         
## HiC_scaffold_41_24007593  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_41_26225447  NA             "0/0"          NA            
## HiC_scaffold_41_28626484  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_41_28660620  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_41_31007688  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_42_1131084   "1/1"          "1/1"          "0/1"         
## HiC_scaffold_42_1818523   "0/0"          NA             "0/0"         
## HiC_scaffold_42_2165002   NA             NA             "0/0"         
## HiC_scaffold_42_2711332   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_42_6142699   "0/1"          "0/0"          "1/1"         
## HiC_scaffold_42_6744976   NA             "0/0"          "0/0"         
## HiC_scaffold_42_8066919   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_42_8068292   "0/1"          "0|1"          NA            
## HiC_scaffold_42_12487888  NA             "1|1"          "1|1"         
## HiC_scaffold_42_41366687  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_42_47313337  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_42_47313338  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_42_50784971  "0/0"          "1|1"          "0|1"         
## HiC_scaffold_42_50784977  "0/0"          "1|1"          "0|1"         
## HiC_scaffold_42_50784981  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_42_51916989  "1/1"          NA             "1/1"         
## HiC_scaffold_43_3842003   "1/1"          NA             "1/1"         
## HiC_scaffold_43_14140861  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_43_15053605  "1/1"          "1/1"          NA            
## HiC_scaffold_43_17289945  "0/1"          "1|1"          "1|1"         
## HiC_scaffold_43_29967704  "0|1"          "0/1"          "0|1"         
## HiC_scaffold_43_35745831  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_43_37627949  "0|1"          "1|1"          "1|1"         
## HiC_scaffold_43_37628126  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_43_44017118  "0/0"          "0/1"          NA            
## HiC_scaffold_43_55124138  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_43_60107326  "0|1"          "0/0"          "0/1"         
## HiC_scaffold_43_61359386  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_43_61702593  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_43_61702606  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_43_61702721  "1|1"          NA             "0/0"         
## HiC_scaffold_43_61702738  "0/0"          NA             "1/1"         
## HiC_scaffold_43_62511703  NA             "0/0"          "1|1"         
## HiC_scaffold_43_64069457  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_43_64577269  NA             "0/0"          "1/1"         
## HiC_scaffold_44_1920144   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_44_2148035   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_44_2568167   "0/1"          "0/1"          "1/1"         
## HiC_scaffold_45_4180070   "0/1"          "1/1"          "1/1"         
## HiC_scaffold_45_4797754   NA             "2/2"          "1/1"         
## HiC_scaffold_45_5911123   "0/0"          "1|1"          NA            
## HiC_scaffold_45_6958990   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_45_8516216   NA             "1|1"          "1/1"         
## HiC_scaffold_45_10191213  "0/0"          "1/1"          "0|1"         
## HiC_scaffold_45_12005885  "1/1"          "0/1"          "0/1"         
## HiC_scaffold_45_12006766  "0/0"          "0|1"          "1|1"         
## HiC_scaffold_45_24736172  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_45_24739830  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_46_9691567   NA             "1/1"          "0|1"         
## HiC_scaffold_46_17380257  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_46_18387147  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_46_37092355  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_46_39183624  NA             "0/0"          "1/1"         
## HiC_scaffold_46_39390547  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_46_42964941  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_46_42986653  "0/0"          "0/0"          NA            
## HiC_scaffold_46_52074364  "1|1"          "1|1"          "0/1"         
## HiC_scaffold_46_54255667  "0/1"          "1/1"          "1|1"         
## HiC_scaffold_47_3750532   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_47_3751345   "0|1"          NA             "1/1"         
## HiC_scaffold_47_15400639  "0|1"          "1|1"          "1|1"         
## HiC_scaffold_47_24072414  NA             "1|1"          "0/0"         
## HiC_scaffold_47_25273825  "1|1"          "0|1"          "1|1"         
## HiC_scaffold_48_8752752   "2/2"          "0/0"          "0/0"         
## HiC_scaffold_48_10765920  NA             "0/0"          "0/1"         
## HiC_scaffold_48_16077918  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_48_16077940  "1|1"          "1/1"          "1/1"         
## HiC_scaffold_48_16411609  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_48_19972580  "0/1"          "0/1"          "1/1"         
## HiC_scaffold_48_23493079  "0|1"          "0/0"          "1|1"         
## HiC_scaffold_48_23597210  "0/1"          "1|1"          "1|1"         
## HiC_scaffold_48_24478493  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_48_24881148  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_48_25865723  "1/1"          NA             "1/1"         
## HiC_scaffold_48_25984068  "0|1"          "0/0"          "1|1"         
## HiC_scaffold_48_25989079  "1/1"          "0/0"          NA            
## HiC_scaffold_48_30601375  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_48_31662115  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_48_41971562  NA             "1/1"          "0/1"         
## HiC_scaffold_49_3392801   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_49_6101692   NA             NA             "1/1"         
## HiC_scaffold_49_7996315   "0/1"          "1/1"          NA            
## HiC_scaffold_49_9470474   NA             "0/0"          "0/1"         
## HiC_scaffold_49_9886007   "0/0"          "1/1"          "1/1"         
## HiC_scaffold_49_12592113  "0/1"          NA             "0/1"         
## HiC_scaffold_49_12741575  NA             "0/1"          "0/0"         
## HiC_scaffold_49_15135019  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_49_25906219  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_49_26614199  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_49_26655554  "0/0"          NA             "1|1"         
## HiC_scaffold_49_37568341  "0/1"          NA             "0/0"         
## HiC_scaffold_49_37568353  "0/1"          NA             "0/0"         
## HiC_scaffold_49_40002255  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_49_40003229  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_49_42966376  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_5_801252     "0/1"          "0/0"          "0/0"         
## HiC_scaffold_5_1446603    "0/0"          "0/0"          "0/0"         
## HiC_scaffold_5_1446611    "0/0"          "0/0"          "0/0"         
## HiC_scaffold_5_1530759    "0|1"          "0/0"          "1/1"         
## HiC_scaffold_5_1539275    "0/0"          NA             "0/0"         
## HiC_scaffold_5_1789576    "1|1"          "0/0"          "0/0"         
## HiC_scaffold_5_1808197    "0/0"          "1/1"          "1/1"         
## HiC_scaffold_5_1808204    "1/1"          "0/0"          "0/0"         
## HiC_scaffold_5_1943895    "1|1"          NA             "1|1"         
## HiC_scaffold_5_1944469    "1/1"          "1/1"          NA            
## HiC_scaffold_5_2857283    "1/1"          "1/1"          "1|1"         
## HiC_scaffold_5_4061378    "1/1"          NA             "0/1"         
## HiC_scaffold_5_4340647    NA             "1|1"          "1|1"         
## HiC_scaffold_5_4435246    "1/1"          NA             "1/1"         
## HiC_scaffold_5_8868783    "0/1"          "0/0"          "1/1"         
## HiC_scaffold_50_4315969   NA             "0/0"          "0/1"         
## HiC_scaffold_50_11652296  NA             "1/1"          "1|1"         
## HiC_scaffold_50_11657309  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_50_15521027  "0/0"          "0/1"          "0|1"         
## HiC_scaffold_50_21050962  NA             "1/1"          "0/0"         
## HiC_scaffold_50_23686202  "1|1"          "0|0"          "1|1"         
## HiC_scaffold_50_27393462  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_50_42586883  "1/1"          "0/0"          "1|1"         
## HiC_scaffold_50_45087211  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_50_49796550  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_50_54383367  "0/1"          "0/1"          "0|1"         
## HiC_scaffold_50_63318678  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_51_3521000   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_51_4681905   "0/1"          NA             "0/1"         
## HiC_scaffold_51_6305599   "2|2"          "0|2"          "0/0"         
## HiC_scaffold_51_8530818   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_51_11653312  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_51_13138547  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_51_14457091  "0/0"          "1|1"          "0/1"         
## HiC_scaffold_51_15512668  "1/1"          "0/1"          "0/1"         
## HiC_scaffold_51_17816346  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_51_19997934  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_51_19997936  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_51_20870773  NA             NA             "0/0"         
## HiC_scaffold_51_26660104  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_51_40727521  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_51_40892841  "0/0"          NA             "0/1"         
## HiC_scaffold_51_41717519  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_51_42547638  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_52_3335804   "0/0"          NA             NA            
## HiC_scaffold_52_4149130   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_52_6893679   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_52_13155416  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_52_13155437  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_52_13155442  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_52_14885688  "0/0"          NA             NA            
## HiC_scaffold_52_14895078  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_52_15141791  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_52_15743051  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_52_15760201  "0/0"          "0/0"          NA            
## HiC_scaffold_52_15834589  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_52_15841769  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_52_15862421  "1|1"          "1|1"          NA            
## HiC_scaffold_52_15970970  "0/0"          NA             "1/2"         
## HiC_scaffold_52_16275237  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_52_16275240  "1|1"          "0/0"          "0|1"         
## HiC_scaffold_52_16275290  "1|1"          "0/0"          "0/1"         
## HiC_scaffold_52_16524164  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_52_16524572  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_52_16525647  "1/1"          "0/1"          "0/1"         
## HiC_scaffold_52_16637047  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_52_17202127  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_52_17207724  "1/1"          "0/0"          NA            
## HiC_scaffold_52_17508820  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_52_17547593  "0/1"          "0/0"          NA            
## HiC_scaffold_52_17551239  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_52_17560696  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_52_17560699  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_52_17741250  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_52_17742260  "0/0"          NA             "0/1"         
## HiC_scaffold_52_18340578  "0|1"          "1/1"          "1/1"         
## HiC_scaffold_52_18415911  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_52_22189517  "1/1"          NA             "1/1"         
## HiC_scaffold_52_22526592  "0/1"          "0/0"          "0|1"         
## HiC_scaffold_52_26393471  "0/0"          NA             "0/0"         
## HiC_scaffold_52_26799380  "1|1"          "0/0"          "0/1"         
## HiC_scaffold_52_31871931  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_52_31874283  "1|1"          "1/1"          "1|1"         
## HiC_scaffold_52_31874287  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_52_32161053  "1|1"          "1|1"          "0|1"         
## HiC_scaffold_52_33165557  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_52_33897620  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_52_34763156  "1/1"          "0/1"          NA            
## HiC_scaffold_52_34763171  "1|1"          "0/1"          NA            
## HiC_scaffold_52_35174755  "0|1"          NA             "0/0"         
## HiC_scaffold_52_35608453  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_52_35608470  "1|1"          "0/0"          "0|1"         
## HiC_scaffold_52_39464728  NA             "0/0"          "0/0"         
## HiC_scaffold_52_42141354  "0/0"          "1|1"          "0/1"         
## HiC_scaffold_52_44675725  "0/1"          "1/1"          "1|1"         
## HiC_scaffold_52_49935920  "1/1"          "1/1"          NA            
## HiC_scaffold_53_21789524  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_53_25168042  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_53_26398989  "0/0"          "0|1"          "0|1"         
## HiC_scaffold_53_26398992  "0/0"          "0|1"          "0|1"         
## HiC_scaffold_53_26398994  "0/0"          "0|1"          "0|1"         
## HiC_scaffold_53_26549665  "0/0"          NA             "0|1"         
## HiC_scaffold_53_29227676  "0/0"          "0|1"          "0/0"         
## HiC_scaffold_53_31250349  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_54_530581    "0/0"          "1|1"          "0/1"         
## HiC_scaffold_54_794095    NA             "1|1"          "1|1"         
## HiC_scaffold_54_1171109   "0/0"          "0|1"          "1|1"         
## HiC_scaffold_54_1378956   "0/0"          "0/0"          NA            
## HiC_scaffold_54_1380539   NA             "1|1"          "1/1"         
## HiC_scaffold_54_3045015   "1/1"          "1/1"          "0/1"         
## HiC_scaffold_54_3185987   "1/1"          NA             "0/0"         
## HiC_scaffold_54_4401098   "0/1"          "1|1"          "0/0"         
## HiC_scaffold_54_5595903   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_54_5595921   "0/0"          NA             "0/1"         
## HiC_scaffold_54_5595928   "0/0"          "0/1"          "1|1"         
## HiC_scaffold_54_5595949   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_54_6649662   NA             NA             "1/1"         
## HiC_scaffold_54_8036734   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_54_9206614   "0/1"          "0/1"          "1/1"         
## HiC_scaffold_54_35913192  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_54_35913282  "0/0"          "0|1"          "0/1"         
## HiC_scaffold_54_35913283  "0/0"          "0|1"          "0/1"         
## HiC_scaffold_55_1260491   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_55_3254027   "1/1"          "0/0"          "0/1"         
## HiC_scaffold_55_3281985   "0/1"          "1|1"          "0/0"         
## HiC_scaffold_55_5409544   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_55_5411094   "1|1"          "1|1"          "0|1"         
## HiC_scaffold_55_5411115   "1/1"          "0/1"          "0|1"         
## HiC_scaffold_55_18121799  "1/1"          "1/1"          NA            
## HiC_scaffold_55_19605809  NA             "0|1"          "1|1"         
## HiC_scaffold_55_19605817  NA             "0/1"          "1|1"         
## HiC_scaffold_55_19605821  NA             "0|1"          "1|1"         
## HiC_scaffold_55_20195204  NA             "0/1"          "0/1"         
## HiC_scaffold_55_20886967  NA             "1/1"          "0/0"         
## HiC_scaffold_55_23222937  NA             "1/1"          "1/1"         
## HiC_scaffold_55_23626331  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_55_24539590  NA             "1/1"          "0/0"         
## HiC_scaffold_55_24585939  NA             "1/1"          NA            
## HiC_scaffold_55_34174151  "1/1"          "0/0"          NA            
## HiC_scaffold_56_17874332  "0/1"          NA             "0/0"         
## HiC_scaffold_56_18635259  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_56_23654344  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_56_35850533  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_56_35850539  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_56_40813556  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_56_53211633  NA             "0/0"          NA            
## HiC_scaffold_56_60070829  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_56_73286017  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_56_73829442  NA             "0/0"          "0/0"         
## HiC_scaffold_56_73829443  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_56_76060304  "0/0"          NA             "1|1"         
## HiC_scaffold_57_25306408  NA             "0/0"          "1/1"         
## HiC_scaffold_57_29222385  NA             "0/0"          "1/1"         
## HiC_scaffold_57_29592432  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_57_31472698  "0|1"          "0/0"          "0/1"         
## HiC_scaffold_57_32371742  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_57_36495072  NA             "0/1"          NA            
## HiC_scaffold_57_37286264  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_57_38537415  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_57_45438854  "1|1"          "2|2"          "2|2"         
## HiC_scaffold_57_52856874  NA             "0/0"          "0/0"         
## HiC_scaffold_57_53575355  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_57_55856783  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_58_1362614   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_58_1432845   "1|1"          "0/1"          "1/1"         
## HiC_scaffold_58_1541720   "0/0"          "0/0"          "0|2"         
## HiC_scaffold_58_2777120   "0/0"          NA             "1/1"         
## HiC_scaffold_58_2973169   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_58_3243043   NA             "1/1"          "0/1"         
## HiC_scaffold_58_4035282   "1/1"          "1/1"          "0/1"         
## HiC_scaffold_58_5442157   "1|1"          "0/0"          "0/1"         
## HiC_scaffold_58_8004631   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_58_8058998   "0/0"          "0/1"          "1/1"         
## HiC_scaffold_58_8932837   "0/0"          "1/1"          "1/1"         
## HiC_scaffold_58_14814944  "1/1"          "0/0"          NA            
## HiC_scaffold_58_15639988  NA             NA             "1/1"         
## HiC_scaffold_58_15707198  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_58_15707258  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_58_15710623  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_58_19155063  "0/0"          "0/0"          NA            
## HiC_scaffold_58_20224050  "0/0"          NA             "0/0"         
## HiC_scaffold_58_38475355  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_59_3979055   "0/0"          NA             "0/1"         
## HiC_scaffold_59_5071810   "1|1"          NA             "1|1"         
## HiC_scaffold_59_5349936   "1/1"          NA             "0/1"         
## HiC_scaffold_59_5350114   "1/1"          "0/0"          "0/1"         
## HiC_scaffold_59_7738302   "0/1"          "1/1"          "0/0"         
## HiC_scaffold_59_7738351   "1/1"          NA             "0/0"         
## HiC_scaffold_59_7958561   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_59_9273798   NA             "0/0"          "0/0"         
## HiC_scaffold_59_50928099  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_59_52960060  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_6_10569023   "0/1"          NA             "1/1"         
## HiC_scaffold_6_10711445   "0/0"          "1/1"          "1/1"         
## HiC_scaffold_6_13209200   "1|1"          "0/1"          "1|1"         
## HiC_scaffold_6_13213107   "0/0"          NA             "0/0"         
## HiC_scaffold_6_13311684   "1|1"          "1/1"          "0/0"         
## HiC_scaffold_6_15670783   "1|1"          "0/0"          "1|1"         
## HiC_scaffold_6_19111232   "1/1"          NA             "1/1"         
## HiC_scaffold_6_32805498   "1/1"          "1/1"          "1|1"         
## HiC_scaffold_6_38793174   "0/1"          "0/1"          "0/0"         
## HiC_scaffold_6_41092101   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_6_41342933   "0/0"          "0/1"          "0/0"         
## HiC_scaffold_6_47594508   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_60_70878     "0|1"          "0/0"          "1|1"         
## HiC_scaffold_60_99549     "0|1"          "0/0"          "0/1"         
## HiC_scaffold_60_201823    "0/1"          "1/1"          "1/1"         
## HiC_scaffold_60_712969    "1|1"          "0/0"          "1|1"         
## HiC_scaffold_60_744783    NA             "0/1"          "0/1"         
## HiC_scaffold_60_744788    NA             "0/1"          "0|1"         
## HiC_scaffold_60_22142128  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_60_27599770  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_60_30608878  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_60_32657324  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_60_32672580  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_60_38856893  "0/0"          NA             "0/1"         
## HiC_scaffold_60_39028335  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_60_40296869  NA             "0/0"          "0/0"         
## HiC_scaffold_60_42775723  "1|1"          "0/0"          "1/1"         
## HiC_scaffold_60_44687906  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_60_44804601  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_60_53696867  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_60_53696868  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_60_60651515  "0|1"          "0/0"          "1/1"         
## HiC_scaffold_60_70678462  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_61_2205328   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_61_2491706   "1|1"          NA             "1|1"         
## HiC_scaffold_61_4009916   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_61_4062917   NA             "1/1"          "0/0"         
## HiC_scaffold_61_4122763   "1|1"          NA             "1|1"         
## HiC_scaffold_61_4216461   "1/1"          NA             "1/1"         
## HiC_scaffold_61_4325053   NA             "0/0"          "0/0"         
## HiC_scaffold_61_9004838   "0/1"          "1/1"          "1|1"         
## HiC_scaffold_61_14635083  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_62_1128608   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_62_11335200  NA             "0/0"          "0/0"         
## HiC_scaffold_62_18828476  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_62_21548870  "0|1"          "1|1"          "1|1"         
## HiC_scaffold_62_23103274  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_62_25793456  NA             "0/0"          "0/0"         
## HiC_scaffold_62_25887474  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_62_28516096  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_62_28516099  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_62_28818725  "0|1"          "1|1"          "1|1"         
## HiC_scaffold_62_28818729  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_62_45207353  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_63_3092269   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_63_3977940   NA             NA             "1/1"         
## HiC_scaffold_63_4084937   "0/1"          NA             "0/0"         
## HiC_scaffold_63_4196326   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_63_6262453   "0/1"          NA             "0/1"         
## HiC_scaffold_63_6350204   "0/0"          "1/1"          "1/1"         
## HiC_scaffold_63_6458794   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_64_9162978   NA             "0/0"          "0/0"         
## HiC_scaffold_64_16876561  "0/0"          "0/0"          NA            
## HiC_scaffold_64_17543009  "0/1"          "0/0"          NA            
## HiC_scaffold_64_18925356  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_64_19133050  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_64_19627769  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_64_20477250  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_64_22816677  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_64_22954654  "0|1"          NA             "1|1"         
## HiC_scaffold_64_22954658  "0|1"          NA             "1|1"         
## HiC_scaffold_64_22954682  "1/1"          NA             "1/1"         
## HiC_scaffold_65_6829971   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_65_8071102   "0/0"          NA             "0/0"         
## HiC_scaffold_65_9023979   "0/0"          "0/0"          NA            
## HiC_scaffold_65_9839671   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_65_10404778  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_65_11327791  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_65_11332104  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_65_34823822  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_65_51418017  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_65_54053979  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_65_57110875  "0/0"          "0/0"          NA            
## HiC_scaffold_66_15615363  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_66_15672090  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_66_17903445  "1/1"          "0/0"          "1|1"         
## HiC_scaffold_66_18298629  "0|1"          "1|1"          "1|1"         
## HiC_scaffold_66_19730676  NA             "0/0"          "1|1"         
## HiC_scaffold_66_23688768  "0/0"          NA             "0/0"         
## HiC_scaffold_66_26614535  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_66_27445665  "1|1"          "0/1"          "1|1"         
## HiC_scaffold_66_29457165  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_66_29457180  NA             "1/1"          "0/0"         
## HiC_scaffold_66_30116287  "2|2"          "1|1"          "0|0"         
## HiC_scaffold_66_31603503  "0/1"          NA             "0/0"         
## HiC_scaffold_66_33261460  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_66_34138981  "0/0"          "1/1"          NA            
## HiC_scaffold_66_34139020  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_66_34142862  NA             "0/0"          NA            
## HiC_scaffold_67_1404390   "0/1"          NA             NA            
## HiC_scaffold_67_28493665  "1/1"          NA             "1/1"         
## HiC_scaffold_67_30243885  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_67_31511806  "1|1"          "0/0"          "0|1"         
## HiC_scaffold_67_34638092  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_67_37534720  NA             "0/1"          "0/0"         
## HiC_scaffold_67_39679546  NA             "1/1"          "0/1"         
## HiC_scaffold_67_39854918  "0/1"          NA             "0/0"         
## HiC_scaffold_67_39860738  "1/1"          NA             "1/1"         
## HiC_scaffold_67_40331656  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_67_40824747  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_68_3438132   "1|1"          "1|1"          NA            
## HiC_scaffold_68_3438133   "1|1"          "1|1"          NA            
## HiC_scaffold_68_11206902  "0/0"          NA             "1/1"         
## HiC_scaffold_68_32770607  NA             "0/1"          "1|1"         
## HiC_scaffold_68_34016823  "0/2"          "0/0"          "0|0"         
## HiC_scaffold_68_34020019  NA             "0/1"          "0/0"         
## HiC_scaffold_68_40296057  NA             NA             "0|1"         
## HiC_scaffold_68_40296059  NA             NA             "0|1"         
## HiC_scaffold_68_65001879  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_69_23311147  "0/0"          "0/0"          "0|2"         
## HiC_scaffold_69_27351303  NA             NA             "1/1"         
## HiC_scaffold_69_29437208  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_69_33699381  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_69_40194698  "0/1"          "0/1"          "0/1"         
## HiC_scaffold_69_48273575  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_69_48348026  "0/0"          "1/1"          "0|1"         
## HiC_scaffold_69_48348034  "0/0"          NA             "0|1"         
## HiC_scaffold_69_49563252  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_69_49593952  "0/0"          NA             "0/1"         
## HiC_scaffold_69_49859037  "1|1"          "0/0"          "0|1"         
## HiC_scaffold_69_51271238  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_69_51529836  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_69_57313650  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_69_57359194  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_6951_523650  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_6951_897126  NA             "0/0"          "0/1"         
## HiC_scaffold_6951_1134482 "1|1"          "0/0"          "0/1"         
## HiC_scaffold_6951_2484960 "0/0"          NA             "1/1"         
## HiC_scaffold_6951_3301273 "0/0"          "1|1"          "0/0"         
## HiC_scaffold_6951_3314609 "0/0"          "0/0"          "0/0"         
## HiC_scaffold_6951_3945993 NA             "0/0"          "0/0"         
## HiC_scaffold_6958_218293  "0/2"          "0/0"          "0/0"         
## HiC_scaffold_6958_449143  "1/1"          NA             "0/1"         
## HiC_scaffold_7_351023     "1/1"          "0/0"          "0/0"         
## HiC_scaffold_7_488024     "1|1"          "0/0"          NA            
## HiC_scaffold_7_492663     "1/1"          "1/1"          "0/1"         
## HiC_scaffold_7_693567     "1|1"          "0/0"          "0/0"         
## HiC_scaffold_7_2379128    "0/0"          "0/0"          "1/1"         
## HiC_scaffold_7_3087721    "1/1"          "0/1"          "0/1"         
## HiC_scaffold_7_3394880    "0/1"          "0/0"          "1/1"         
## HiC_scaffold_7_22247106   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_70_4632611   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_70_14042778  NA             NA             "0/0"         
## HiC_scaffold_71_410844    "0/0"          "0/0"          "1|1"         
## HiC_scaffold_71_1753451   "0/0"          "0/1"          "0/0"         
## HiC_scaffold_71_2283682   "0/1"          "0|1"          "0/0"         
## HiC_scaffold_71_3439685   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_71_17850462  NA             "1/1"          "0/0"         
## HiC_scaffold_71_20588314  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_71_25465351  "0|1"          "0|1"          "1|1"         
## HiC_scaffold_71_25465352  "0|1"          "0|1"          "1|1"         
## HiC_scaffold_71_26356062  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_72_11785096  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_72_17285854  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_72_23704999  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_72_24465318  "1/1"          "1/1"          "0|1"         
## HiC_scaffold_72_30457277  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_72_32068649  "0/0"          "0/0"          NA            
## HiC_scaffold_72_35058295  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_72_36024997  NA             "0/0"          "0/1"         
## HiC_scaffold_72_37135067  "0/0"          NA             "1|1"         
## HiC_scaffold_72_38410141  "0/1"          "0/1"          "1/1"         
## HiC_scaffold_72_38448056  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_72_41412511  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_73_2192629   "1|1"          "0/0"          "1|1"         
## HiC_scaffold_73_2920208   NA             "0|1"          "0/0"         
## HiC_scaffold_73_4522493   "1|1"          NA             "1|1"         
## HiC_scaffold_73_4748625   "1/1"          "1|1"          "1/1"         
## HiC_scaffold_73_5839336   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_73_9338582   "0/1"          "0/1"          "0/1"         
## HiC_scaffold_73_27393859  "0/1"          "0/0"          NA            
## HiC_scaffold_74_14235619  "0/0"          "0/0"          NA            
## HiC_scaffold_74_14515598  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_74_15116121  NA             "0/0"          "1|1"         
## HiC_scaffold_74_17233613  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_74_17725340  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_74_18418135  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_74_18418138  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_74_21254425  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_74_22261065  "1/1"          "0/0"          NA            
## HiC_scaffold_74_47132519  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_74_50979096  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_74_51060549  "0/0"          NA             "1/1"         
## HiC_scaffold_74_53256803  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_74_55464169  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_74_55515512  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_74_55999260  "0/0"          "1|1"          NA            
## HiC_scaffold_74_57404902  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_74_58181927  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_74_58198600  "0/0"          NA             "1/1"         
## HiC_scaffold_74_63060195  NA             "0/1"          "0/1"         
## HiC_scaffold_75_5345466   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_75_5346522   "1/1"          NA             "0/1"         
## HiC_scaffold_75_5346535   "1/1"          NA             "0/1"         
## HiC_scaffold_75_9850973   "1/1"          "1|1"          "0/0"         
## HiC_scaffold_76_27149820  "0|1"          "1/1"          "0/0"         
## HiC_scaffold_76_31582908  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_76_31792815  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_76_35352820  "1/1"          "1/1"          "1|1"         
## HiC_scaffold_76_57782171  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_76_59862401  "1/1"          "1|1"          "0/0"         
## HiC_scaffold_76_61095594  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_76_65496128  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_76_68965847  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_76_68966411  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_76_69823482  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_76_73343841  "1/1"          NA             NA            
## HiC_scaffold_77_3598274   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_77_6982137   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_77_11021994  "1/1"          NA             "0|1"         
## HiC_scaffold_77_13608165  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_77_16888594  "0|1"          NA             "0/1"         
## HiC_scaffold_77_16888623  "0/1"          "0/1"          "0/1"         
## HiC_scaffold_77_16889448  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_77_39784685  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_77_44375866  "0/0"          NA             "1/1"         
## HiC_scaffold_77_45385370  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_78_5719919   "0/0"          "1/1"          "0/1"         
## HiC_scaffold_78_11353297  "0|1"          "0/0"          "0/1"         
## HiC_scaffold_78_27316392  "0/0"          NA             "0/0"         
## HiC_scaffold_78_48124809  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_78_48124826  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_78_48126176  NA             "0/0"          "1/1"         
## HiC_scaffold_78_48279096  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_78_48434558  "0/1"          NA             "1|1"         
## HiC_scaffold_78_49759181  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_78_49759192  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_78_49759215  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_78_51364025  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_78_55395445  "0/1"          "0/1"          "0/0"         
## HiC_scaffold_78_59610866  "1/1"          NA             "1/1"         
## HiC_scaffold_78_62136661  "0/1"          NA             "1/1"         
## HiC_scaffold_79_1643780   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_79_2519178   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_79_2858100   NA             NA             "0/0"         
## HiC_scaffold_79_3922454   NA             "0/0"          "1/1"         
## HiC_scaffold_79_4127878   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_79_4543693   "1/1"          "0/0"          "0/1"         
## HiC_scaffold_79_11507678  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_79_12618812  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_79_14185404  NA             "1|1"          "1|1"         
## HiC_scaffold_79_17120237  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_79_17120254  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_79_35551507  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_79_35551543  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_79_38927423  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_79_42623307  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_79_43179786  "1/1"          "0/0"          "0|1"         
## HiC_scaffold_79_43180099  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_79_43828078  NA             "0/0"          "1|1"         
## HiC_scaffold_79_43872513  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_79_44627215  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_79_50772769  "0/1"          "0|0"          "0/1"         
## HiC_scaffold_79_55468575  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_79_55816114  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_79_59915784  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_79_60165298  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_79_60165305  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_79_69145556  "0/0"          "0/0"          NA            
## HiC_scaffold_79_70208305  "1|1"          "0|1"          "0|1"         
## HiC_scaffold_79_73412292  NA             "2/2"          "0/0"         
## HiC_scaffold_79_73416663  "0|1"          "0/0"          "0|1"         
## HiC_scaffold_79_73416688  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_79_76863102  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_79_81279649  "0/0"          NA             "0/0"         
## HiC_scaffold_79_81499990  NA             "1/1"          "1/1"         
## HiC_scaffold_79_82319836  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_79_82319849  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_79_83163707  "0/0"          "0/0"          NA            
## HiC_scaffold_79_86283512  NA             "0/0"          "0/0"         
## HiC_scaffold_79_87123758  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_79_88362889  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_79_88599431  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_79_89322919  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_79_89331918  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_79_91340958  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_8_13649836   "1/1"          "1|1"          "1|1"         
## HiC_scaffold_8_13650752   NA             "1|1"          "1|1"         
## HiC_scaffold_8_23818233   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_8_24123972   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_8_24230791   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_8_24588423   NA             "1|1"          "0/0"         
## HiC_scaffold_8_25348483   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_8_25421933   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_8_25772942   "1/1"          "1/1"          "0/1"         
## HiC_scaffold_8_26289589   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_8_27602740   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_8_28159063   "0/0"          "1/1"          "0/1"         
## HiC_scaffold_8_30829320   "0/0"          "0/0"          NA            
## HiC_scaffold_8_31044084   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_8_31415507   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_8_32594682   "0|1"          "0/0"          "0/0"         
## HiC_scaffold_80_3617847   "0|1"          "0/1"          "1|1"         
## HiC_scaffold_80_5758183   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_80_6760006   "0/0"          "0/0"          "0|1"         
## HiC_scaffold_80_6760037   NA             "0/0"          "0/1"         
## HiC_scaffold_80_7772622   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_80_7919533   "1/1"          "0/1"          "0|2"         
## HiC_scaffold_80_8110052   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_80_8193366   "1/1"          NA             "1/1"         
## HiC_scaffold_80_8625784   "1/1"          "1/1"          "0/1"         
## HiC_scaffold_80_8912846   NA             "0/1"          "0/1"         
## HiC_scaffold_80_9544102   "0/1"          "1/1"          "0/0"         
## HiC_scaffold_80_10770701  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_80_11590146  "0/0"          NA             "0/0"         
## HiC_scaffold_80_16953653  "0/1"          NA             "0/1"         
## HiC_scaffold_80_18938832  "0/0"          NA             "0/0"         
## HiC_scaffold_80_19015946  "1/1"          NA             "1/1"         
## HiC_scaffold_80_19404001  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_80_25346708  "1|1"          NA             "0/1"         
## HiC_scaffold_80_37479851  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_80_37507516  "0/0"          NA             "1/1"         
## HiC_scaffold_81_1187192   "0/0"          "0/1"          "0/0"         
## HiC_scaffold_81_2689826   NA             "1|1"          "0|1"         
## HiC_scaffold_81_2690751   "1|1"          NA             "0/0"         
## HiC_scaffold_81_6614123   "0/1"          NA             "0/1"         
## HiC_scaffold_81_7836855   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_81_10334868  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_81_10458752  NA             "1/1"          "1/1"         
## HiC_scaffold_81_17515538  NA             "1/1"          "0/1"         
## HiC_scaffold_81_40271282  NA             "0/0"          "0/0"         
## HiC_scaffold_81_40271294  NA             "1/1"          "1/1"         
## HiC_scaffold_81_41096427  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_81_41096444  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_81_43820595  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_81_43820732  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_81_43854278  "0/0"          "1/1"          NA            
## HiC_scaffold_81_44804862  "0|1"          "0/0"          "1/1"         
## HiC_scaffold_81_45063428  "0/0"          NA             "0|1"         
## HiC_scaffold_81_45950590  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_81_46714752  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_81_46714759  "1|1"          "1|1"          "0/1"         
## HiC_scaffold_81_47170397  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_81_47628201  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_81_48105216  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_81_48932070  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_81_54050146  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_82_5672063   "0/0"          "0|1"          "1/1"         
## HiC_scaffold_82_8796823   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_82_13450959  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_82_26144442  "1/1"          "0/0"          NA            
## HiC_scaffold_82_26147011  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_82_28907834  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_82_34413793  "0/1"          "1|1"          "0/0"         
## HiC_scaffold_82_34413800  "0/1"          "1|1"          "0/0"         
## HiC_scaffold_82_36173035  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_82_40539273  NA             "0/0"          "0/1"         
## HiC_scaffold_82_41470256  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_83_23993605  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_83_35035961  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_83_43423618  NA             "1|1"          "0/0"         
## HiC_scaffold_83_46920654  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_83_46934197  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_84_356301    "0/1"          "1|1"          "0/0"         
## HiC_scaffold_84_5761817   "0/0"          "1/1"          NA            
## HiC_scaffold_84_5769022   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_84_6288130   "1|1"          "0/0"          "0|1"         
## HiC_scaffold_84_6288141   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_84_6288147   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_84_7069238   "1|1"          "0/0"          "1|1"         
## HiC_scaffold_84_9131309   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_84_10148442  "0|1"          "1/1"          "0/1"         
## HiC_scaffold_84_14659391  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_84_16302752  "2|2"          "1/1"          "1/1"         
## HiC_scaffold_84_18463244  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_84_22909575  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_84_29275266  "0/0"          NA             "0/1"         
## HiC_scaffold_84_31184610  "1/1"          NA             "1/1"         
## HiC_scaffold_84_33093169  "0/0"          "0/0"          NA            
## HiC_scaffold_84_37675180  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_84_39501814  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_84_50169438  "0|0"          "0|1"          "0|0"         
## HiC_scaffold_84_50169445  "0|0"          "0|1"          "0|0"         
## HiC_scaffold_84_51231025  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_85_9792207   "0/0"          NA             "0/0"         
## HiC_scaffold_85_11784233  "1/1"          "1|1"          "0|1"         
## HiC_scaffold_85_11911022  "1|1"          NA             "0/0"         
## HiC_scaffold_85_11911142  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_85_11913828  NA             "0/0"          "0/0"         
## HiC_scaffold_85_11913831  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_85_12353081  "0/1"          "0/1"          "0/1"         
## HiC_scaffold_85_12414551  "1/1"          NA             "0/0"         
## HiC_scaffold_85_13043967  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_85_13221888  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_85_27008863  "0/1"          "0/1"          "0/1"         
## HiC_scaffold_85_28992264  "0/1"          "1|1"          "0|1"         
## HiC_scaffold_85_28992268  "0|1"          "1|1"          "0/1"         
## HiC_scaffold_85_64310850  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_85_65135112  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_85_65563529  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_86_1949664   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_86_5340423   NA             "0|1"          "1/1"         
## HiC_scaffold_86_5483991   "0/1"          "1|1"          "0/0"         
## HiC_scaffold_86_8928469   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_86_23727924  "1|1"          "0|1"          "1|1"         
## HiC_scaffold_86_24825818  "1|1"          "1|1"          "0|0"         
## HiC_scaffold_86_25333718  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_86_29668168  NA             "0/0"          "1|1"         
## HiC_scaffold_86_30914243  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_86_32040320  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_86_32040329  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_86_32125061  NA             "0/0"          "0/0"         
## HiC_scaffold_86_32144758  NA             "0/1"          "0/0"         
## HiC_scaffold_86_32153692  "1/1"          NA             "0/1"         
## HiC_scaffold_86_32534129  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_86_32605768  NA             "0/0"          "0/0"         
## HiC_scaffold_86_36355399  NA             "0/0"          "0/1"         
## HiC_scaffold_86_36357265  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_87_1253643   "0/0"          NA             "1/1"         
## HiC_scaffold_87_2137958   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_87_3980100   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_87_4395923   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_87_5489328   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_87_6300441   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_87_16306904  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_87_44780945  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_88_5584327   "0/0"          NA             "0/0"         
## HiC_scaffold_88_7104630   "1|1"          "0/0"          NA            
## HiC_scaffold_88_7104631   "1|1"          "1/1"          NA            
## HiC_scaffold_88_7104638   "1|1"          "1|1"          NA            
## HiC_scaffold_88_7104639   "1|1"          "0/0"          NA            
## HiC_scaffold_88_7104640   "0/0"          "1|1"          NA            
## HiC_scaffold_88_7479340   "1/1"          "1/1"          "0/1"         
## HiC_scaffold_88_8773607   "0/0"          "1|1"          NA            
## HiC_scaffold_88_9883678   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_88_10878718  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_88_19365116  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_88_20477349  "1/1"          NA             "1/1"         
## HiC_scaffold_88_20557885  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_89_675045    "1/1"          "0/0"          "0/0"         
## HiC_scaffold_89_2815845   "0/0"          "1|2"          "0|2"         
## HiC_scaffold_89_2843940   "0|1"          "0/0"          "0/0"         
## HiC_scaffold_89_3018830   "1/1"          "0/1"          "1/1"         
## HiC_scaffold_89_13745506  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_89_30006907  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_89_36509388  "0/0"          "0|1"          "1|1"         
## HiC_scaffold_89_38703735  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_89_38764895  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_89_42052609  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_89_42054991  "0/0"          "1/1"          NA            
## HiC_scaffold_89_44306958  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_89_44338206  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_89_45298973  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_9_3529921    "1/1"          "0/1"          "0/0"         
## HiC_scaffold_9_5660454    NA             "1|1"          "0/0"         
## HiC_scaffold_9_5660461    NA             "1|1"          "1|1"         
## HiC_scaffold_9_5854070    "0/0"          "1/1"          "0/0"         
## HiC_scaffold_9_6142415    NA             NA             "0|1"         
## HiC_scaffold_9_6142436    NA             NA             "0|1"         
## HiC_scaffold_9_6143781    "0/0"          "0/0"          "0/0"         
## HiC_scaffold_9_6654825    "0/0"          "0/0"          "1/1"         
## HiC_scaffold_9_7094545    "0/0"          "1|1"          "1|1"         
## HiC_scaffold_9_7100208    "0/0"          "1|1"          "0|1"         
## HiC_scaffold_9_7109988    "1/1"          "0/0"          "0/0"         
## HiC_scaffold_9_7111922    "1|1"          "1|1"          "0/0"         
## HiC_scaffold_9_8235781    "1/1"          NA             "0/0"         
## HiC_scaffold_9_8279558    "1/1"          "1/1"          "0/0"         
## HiC_scaffold_9_15679481   "0|1"          "0/0"          "0/1"         
## HiC_scaffold_9_18082611   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_9_18090830   NA             "0/0"          "1/1"         
## HiC_scaffold_9_30240531   "0/1"          NA             "1/1"         
## HiC_scaffold_90_10418696  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_90_11470224  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_90_13593319  NA             "0/0"          "0/0"         
## HiC_scaffold_90_16260161  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_90_22325499  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_90_23574204  "1|1"          "0/1"          "0/0"         
## HiC_scaffold_90_23609908  "1|1"          NA             NA            
## HiC_scaffold_90_23623078  NA             "0/0"          "0/0"         
## HiC_scaffold_90_23626883  "1/1"          NA             "0/0"         
## HiC_scaffold_90_23812663  NA             "1/1"          "1/1"         
## HiC_scaffold_90_25939283  "0/1"          "0/1"          "0/0"         
## HiC_scaffold_90_25985714  NA             "0/1"          NA            
## HiC_scaffold_90_30751272  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_90_31232025  "0/0"          NA             "1|1"         
## HiC_scaffold_90_31245699  "0/1"          "0/0"          "0|1"         
## HiC_scaffold_90_31527975  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_90_31546172  NA             "0/1"          "0/1"         
## HiC_scaffold_90_38511996  "0|1"          NA             "1|1"         
## HiC_scaffold_90_38511999  "0|1"          NA             "1|1"         
## HiC_scaffold_90_38517279  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_90_40624104  "0/1"          "0/1"          "0/1"         
## HiC_scaffold_91_5644765   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_91_5867214   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_91_5867226   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_91_7704263   NA             "1|1"          "0|1"         
## HiC_scaffold_91_7871360   "0/1"          NA             "1/1"         
## HiC_scaffold_91_8538014   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_91_13230485  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_91_28696118  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_91_28696625  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_91_42177482  "0/0"          "0|1"          "0/0"         
## HiC_scaffold_91_46813640  "2|2"          "0/0"          "0|2"         
## HiC_scaffold_92_23783035  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_92_23783036  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_92_24712793  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_92_28698258  NA             "1/1"          "0/0"         
## HiC_scaffold_92_40691582  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_92_43967712  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_92_47147572  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_92_49042714  "1|1"          "1|1"          "0|0"         
## HiC_scaffold_92_49042715  "1|1"          "1|1"          "0|0"         
## HiC_scaffold_92_53634002  "1/1"          "1/1"          NA            
## HiC_scaffold_92_58211868  "0/0"          NA             "1|1"         
## HiC_scaffold_92_60114155  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_92_63603483  NA             "0/0"          "1|1"         
## HiC_scaffold_92_64797225  "0/2"          "0/0"          "0/0"         
## HiC_scaffold_92_68367476  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_93_1912167   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_93_2485978   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_93_3227638   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_93_3227641   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_93_13971208  "1/1"          NA             "1/1"         
## HiC_scaffold_93_13987080  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_93_21125468  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_93_21845293  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_93_21845310  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_93_21846342  "1/1"          NA             "0/0"         
## HiC_scaffold_93_21846356  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_93_22589723  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_93_22619278  NA             "0/0"          "1/1"         
## HiC_scaffold_93_22631258  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_93_22631266  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_94_3110102   "1/1"          NA             "0/1"         
## HiC_scaffold_94_3205919   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_94_9023846   "0/0"          "1/1"          "0/1"         
## HiC_scaffold_94_11572820  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_94_12368532  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_94_42179418  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_94_42179519  "1/1"          NA             "0/0"         
## HiC_scaffold_94_51646206  "0/0"          NA             "0/0"         
## HiC_scaffold_94_52781289  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_94_53790035  "0/0"          NA             "0/1"         
## HiC_scaffold_94_53792738  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_94_56768905  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_946_81276    "0/0"          "1/1"          NA            
## HiC_scaffold_95_3189690   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_95_4397298   "1/1"          "1|1"          "0/1"         
## HiC_scaffold_95_9469157   "0|1"          "0/0"          "0/0"         
## HiC_scaffold_95_10641411  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_95_10949821  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_95_12993394  "0|1"          "1|1"          NA            
## HiC_scaffold_95_15515793  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_95_15608785  "1|1"          "0|1"          "0/0"         
## HiC_scaffold_95_15609137  "1/1"          "0/0"          NA            
## HiC_scaffold_95_16295316  "0/0"          NA             "1/1"         
## HiC_scaffold_95_22656165  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_95_25885727  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_96_10460019  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_96_27155785  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_96_37939434  "0|1"          "0/0"          "1/1"         
## HiC_scaffold_96_51115048  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_96_51116511  "0/1"          "1|1"          "1/1"         
## HiC_scaffold_96_51915040  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_96_52681287  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_96_53276519  "1/1"          NA             "1/1"         
## HiC_scaffold_97_1736926   "0/0"          "1|1"          NA            
## HiC_scaffold_97_1736994   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_97_3863543   NA             NA             "1/1"         
## HiC_scaffold_97_4200445   "0/1"          "0/0"          "1/1"         
## HiC_scaffold_97_4799162   "0/0"          "0/1"          "1/1"         
## HiC_scaffold_97_5027892   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_97_8007933   "0/1"          "1|1"          "1/1"         
## HiC_scaffold_97_17997210  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_97_18604647  "1|1"          "1/1"          "1/1"         
## HiC_scaffold_97_20239636  NA             NA             "0/0"         
## HiC_scaffold_98_15154096  "1|1"          "0/0"          "0|1"         
## HiC_scaffold_98_22342667  "1/1"          "0|1"          "0|1"         
## HiC_scaffold_98_22634293  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_98_22634294  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_98_22721138  "1/1"          NA             "1/1"         
## HiC_scaffold_98_22869378  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_98_24108405  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_98_27359592  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_98_28549834  NA             "1/1"          "0/1"         
## HiC_scaffold_98_28867520  "1|1"          "0|1"          "1|1"         
## HiC_scaffold_98_28867524  "2|2"          "0|2"          "1|1"         
## HiC_scaffold_98_29431717  "1|1"          "1|1"          "0/1"         
## HiC_scaffold_98_29675109  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_99_1163244   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_99_1451611   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_99_2021961   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_99_5134392   "0/0"          "0/0"          NA            
## HiC_scaffold_99_5239109   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_99_6917738   "1|1"          "0/0"          "1|1"         
## HiC_scaffold_99_11221970  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_99_25982503  NA             "1/1"          "1/1"         
##                           Tank_16_Crab_1 Tank_16_Crab_2 Tank_16_Crab_4
## HiC_scaffold_1_2523394    "1/1"          "0/0"          "0/1"         
## HiC_scaffold_1_2542157    "0/0"          "0/1"          NA            
## HiC_scaffold_1_2647806    "1/1"          "1/1"          "0/0"         
## HiC_scaffold_1_2970226    "0/0"          "1|1"          "1|1"         
## HiC_scaffold_1_3329447    NA             "1/1"          "0/0"         
## HiC_scaffold_1_3795100    "0|1"          "0|1"          "1|1"         
## HiC_scaffold_10_2221345   "0/0"          "1|1"          NA            
## HiC_scaffold_10_2299490   "0|1"          "0|1"          "0/0"         
## HiC_scaffold_10_2565301   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_10_3864355   "0/0"          NA             "1/1"         
## HiC_scaffold_10_4319900   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_10_4319907   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_10_5404579   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_10_5843373   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_100_854947   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_100_1070817  "0|1"          "0/0"          "1/1"         
## HiC_scaffold_100_2002094  "0/0"          "0|1"          "1|1"         
## HiC_scaffold_100_2002097  "0/0"          "0|1"          "1|1"         
## HiC_scaffold_100_2010331  "1|1"          "1|1"          NA            
## HiC_scaffold_100_5186498  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_100_5828477  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_100_6470419  "0|1"          "1|1"          "0/0"         
## HiC_scaffold_100_6739225  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_100_6739258  "0/0"          "0/0"          NA            
## HiC_scaffold_100_6739264  "0/0"          "0/0"          NA            
## HiC_scaffold_100_6907177  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_100_8384481  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_100_8384495  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_100_9451470  "0/0"          "0/0"          "0/2"         
## HiC_scaffold_100_10464574 "1/1"          "0/1"          "0/0"         
## HiC_scaffold_100_11934792 NA             "1|1"          "1|1"         
## HiC_scaffold_100_11980177 "1|1"          "1/1"          "1/1"         
## HiC_scaffold_100_18465760 "0/0"          "0/0"          "0/0"         
## HiC_scaffold_100_18465762 "0/0"          "0/0"          "0/0"         
## HiC_scaffold_100_18466205 "0/0"          NA             "0/0"         
## HiC_scaffold_100_31738115 "1/1"          "0|1"          "1/1"         
## HiC_scaffold_100_44227362 "0/0"          "1|1"          "0/0"         
## HiC_scaffold_101_12808961 "0/0"          NA             "0/0"         
## HiC_scaffold_101_13897149 "0/1"          "1/1"          "0/0"         
## HiC_scaffold_101_18337279 "1/1"          NA             "0/0"         
## HiC_scaffold_101_20800167 "1/1"          "1/1"          "1/1"         
## HiC_scaffold_102_2260041  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_102_8734519  "1|1"          "0/0"          NA            
## HiC_scaffold_102_10233999 "1|1"          NA             "1|1"         
## HiC_scaffold_102_11446042 "0/0"          "0/0"          "0/0"         
## HiC_scaffold_102_15918694 "0/0"          "1|1"          "0/0"         
## HiC_scaffold_102_15935667 "0/0"          "0/0"          "0/0"         
## HiC_scaffold_102_17442643 "1/1"          "0/0"          "1/1"         
## HiC_scaffold_102_17608969 "0/1"          NA             "1/1"         
## HiC_scaffold_102_20180185 "1/1"          "0/0"          "1/1"         
## HiC_scaffold_102_24788723 "0/1"          NA             "1/1"         
## HiC_scaffold_102_25423729 "1|1"          "1|1"          "1|1"         
## HiC_scaffold_102_39755142 "1/1"          NA             "0/1"         
## HiC_scaffold_102_52046978 "1/1"          "0/1"          "0/0"         
## HiC_scaffold_1027_34152   "1/1"          "0/1"          "1/1"         
## HiC_scaffold_103_601715   "0/0"          "0/0"          NA            
## HiC_scaffold_103_2891384  "0/1"          NA             "1/1"         
## HiC_scaffold_103_8191270  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_103_9521272  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_103_14768909 "0/0"          "0/0"          NA            
## HiC_scaffold_103_19312119 "1|1"          "1|1"          "1/1"         
## HiC_scaffold_103_21284866 NA             "1/1"          "1|1"         
## HiC_scaffold_103_31428453 "1|1"          "0|1"          NA            
## HiC_scaffold_103_42567396 "0/1"          "0/1"          "0/1"         
## HiC_scaffold_103_45921571 "0|1"          "1|1"          "0/0"         
## HiC_scaffold_103_45921573 "0|1"          "1|1"          "0/0"         
## HiC_scaffold_103_49592022 NA             "1|1"          "1|1"         
## HiC_scaffold_103_49620132 "0|1"          "1|1"          "1|1"         
## HiC_scaffold_103_50440915 "1|1"          "0/0"          NA            
## HiC_scaffold_103_51944137 NA             "1/1"          "0/1"         
## HiC_scaffold_103_54308582 "0/0"          "0/0"          "1|1"         
## HiC_scaffold_103_54424067 "0/0"          "1|1"          "1|1"         
## HiC_scaffold_103_56932900 "1/1"          "1/1"          "1/1"         
## HiC_scaffold_103_57470264 "1|1"          "1|1"          "1|1"         
## HiC_scaffold_104_7771140  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_104_9103028  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_104_10633168 "0/0"          "0/0"          "0/1"         
## HiC_scaffold_104_18917031 NA             "1/1"          "0/1"         
## HiC_scaffold_104_20851902 "0/1"          "1/1"          "1/1"         
## HiC_scaffold_104_24451803 NA             "0/1"          "0/0"         
## HiC_scaffold_104_28597688 "0/0"          "0/0"          NA            
## HiC_scaffold_104_40927999 "0/0"          "0/1"          "0/0"         
## HiC_scaffold_104_46490074 "1/1"          "0/0"          "0/1"         
## HiC_scaffold_104_49759053 "1/1"          "0/0"          "1/1"         
## HiC_scaffold_104_57267896 "0/1"          "0/1"          "0/0"         
## HiC_scaffold_104_62570010 "1/1"          NA             "0/0"         
## HiC_scaffold_11_32804173  "0/0"          NA             "1/1"         
## HiC_scaffold_11_34516508  "1/1"          "1/1"          NA            
## HiC_scaffold_11_35332996  "0/0"          NA             "0/0"         
## HiC_scaffold_11_35904027  NA             "1|1"          "1/1"         
## HiC_scaffold_11_41539793  "0/1"          "1/1"          "1|1"         
## HiC_scaffold_11_41604080  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_11_42855323  "0/1"          "1/1"          NA            
## HiC_scaffold_11_45339409  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_11_45339410  "0/1"          "1|1"          "0/1"         
## HiC_scaffold_11_47544035  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_12_7515164   "0/1"          "0/1"          "1/1"         
## HiC_scaffold_12_12640100  "1/1"          NA             "0/1"         
## HiC_scaffold_12_12826705  "0/0"          NA             "0|1"         
## HiC_scaffold_12_14899285  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_12_17465672  "0/0"          "0/0"          NA            
## HiC_scaffold_12_22770710  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_12_32318964  "1|1"          "1|1"          "0|1"         
## HiC_scaffold_12_35136373  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_12_40687860  "0/0"          NA             "0/0"         
## HiC_scaffold_13_2938168   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_13_20350974  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_13_27759554  "0/0"          "0/0"          NA            
## HiC_scaffold_13_28146828  "0/0"          NA             "0/0"         
## HiC_scaffold_13_28146830  "0/0"          NA             "0/0"         
## HiC_scaffold_13_28925343  "1/1"          NA             NA            
## HiC_scaffold_13_31913129  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_13_32078924  "0/0"          "0/0"          NA            
## HiC_scaffold_13_33864805  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_13_34892542  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_13_34893103  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_13_35762551  NA             "0/0"          "1|1"         
## HiC_scaffold_13_35881745  NA             "1|1"          "1/1"         
## HiC_scaffold_13_35881749  NA             "1|1"          "0/1"         
## HiC_scaffold_14_3843214   NA             "1/1"          "1/1"         
## HiC_scaffold_14_25884262  "0/2"          "0/0"          "2|2"         
## HiC_scaffold_14_27050415  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_14_27118495  "1/1"          NA             "1/1"         
## HiC_scaffold_14_27277222  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_14_29215814  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_15_2460398   "1|1"          "0/0"          NA            
## HiC_scaffold_15_2462980   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_15_2467289   "1/1"          "0/1"          "1/1"         
## HiC_scaffold_15_5669141   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_15_13700694  "0/2"          NA             "0/0"         
## HiC_scaffold_15_17825275  "1|1"          "1|1"          NA            
## HiC_scaffold_15_19938475  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_15_23865956  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_15_28837774  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_15_28837810  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_15_28837823  "0/0"          "1|1"          "0|1"         
## HiC_scaffold_15_28837835  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_15_28837841  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_15_28837854  "0/1"          "0/1"          "1/1"         
## HiC_scaffold_15_34827832  "0/1"          NA             "0/0"         
## HiC_scaffold_15_34893807  "0/1"          NA             "0/0"         
## HiC_scaffold_15_35327348  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_15_42161112  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_15_42164926  "1|1"          "0|1"          "0|1"         
## HiC_scaffold_15_42164946  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_15_46289572  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_15_50591576  "0/0"          "1|1"          NA            
## HiC_scaffold_15_50759128  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_15_51188336  "1|1"          "0/1"          "0/0"         
## HiC_scaffold_15_54726640  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_15_54788235  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_15_56162375  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_15_61091106  "1/1"          "1/1"          NA            
## HiC_scaffold_15_61464359  "1/1"          "1/1"          NA            
## HiC_scaffold_15_61510386  "0/1"          "0/1"          "0/0"         
## HiC_scaffold_15_62309788  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_15_62309793  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_15_62771254  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_15_63493927  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_15_64997502  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_15_65007865  "1|1"          "1|1"          "1/1"         
## HiC_scaffold_15_65007879  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_15_66038529  "0/1"          "1/1"          "0/1"         
## HiC_scaffold_15_69811281  "1/1"          NA             "1/1"         
## HiC_scaffold_16_14205925  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_16_30404047  "0/1"          "0/1"          "0/0"         
## HiC_scaffold_16_57413288  "1|1"          "1|1"          NA            
## HiC_scaffold_16_63687578  "0/0"          "1|1"          NA            
## HiC_scaffold_16_74138787  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_16_74140106  "1/1"          "0|1"          "0/0"         
## HiC_scaffold_16_76276015  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_17_11390873  "0|1"          "0|1"          NA            
## HiC_scaffold_17_12551128  "0/1"          "0/0"          NA            
## HiC_scaffold_17_16615612  "0/1"          "0/1"          "0/1"         
## HiC_scaffold_17_18838093  "0/1"          NA             NA            
## HiC_scaffold_17_22801072  NA             "1/1"          "0/1"         
## HiC_scaffold_17_23788599  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_17_29383895  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_17_29618771  NA             "1/1"          "1/1"         
## HiC_scaffold_17_29976139  "1/1"          NA             "0/0"         
## HiC_scaffold_17_31107213  "0/1"          "0/1"          NA            
## HiC_scaffold_17_32493792  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_17_33732050  "1/1"          NA             "0/0"         
## HiC_scaffold_17_33801314  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_17_34081889  NA             "1/1"          "1/1"         
## HiC_scaffold_18_227565    "0/0"          "1/1"          NA            
## HiC_scaffold_18_1213486   "1/1"          "0/0"          NA            
## HiC_scaffold_18_1701312   "1/1"          "2/2"          "0/0"         
## HiC_scaffold_18_3506437   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_18_6304978   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_18_6351493   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_18_6358009   "0/0"          "1/1"          "1/1"         
## HiC_scaffold_18_10770701  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_18_13342858  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_18_20045832  "0/0"          NA             "0/0"         
## HiC_scaffold_18_22682683  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_18_26337790  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_18_48929148  "1|1"          NA             "0/0"         
## HiC_scaffold_18_51490626  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_18_53723137  "0/0"          "0/1"          NA            
## HiC_scaffold_18_54496637  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_18_55294388  "0/1"          NA             "1/1"         
## HiC_scaffold_19_279726    "1/1"          "0/0"          "1/1"         
## HiC_scaffold_19_6426572   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_19_6575887   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_19_7755254   "0/1"          "0/1"          NA            
## HiC_scaffold_19_9301421   "1|1"          "0/0"          "1|1"         
## HiC_scaffold_19_9357388   NA             "1|1"          "1|1"         
## HiC_scaffold_19_9778841   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_19_10928976  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_19_10928980  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_19_10928982  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_19_11106347  "0/0"          NA             "0/1"         
## HiC_scaffold_19_11590139  "0/0"          "0/0"          NA            
## HiC_scaffold_19_11665300  "1/1"          NA             "0/1"         
## HiC_scaffold_19_14793640  "0/0"          NA             NA            
## HiC_scaffold_19_22112743  "0|0"          NA             "0/0"         
## HiC_scaffold_19_25473671  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_19_25473692  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_19_28110829  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_19_28465002  "0/0"          "0|1"          "1/1"         
## HiC_scaffold_19_28465167  "0|1"          "0/0"          "1|1"         
## HiC_scaffold_19_30106869  "0/0"          "0|1"          "1|1"         
## HiC_scaffold_19_52538858  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_19_52596196  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_19_53482993  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_19_54312637  "1/1"          NA             NA            
## HiC_scaffold_19_59345841  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_2_3296144    NA             "1|1"          "1|1"         
## HiC_scaffold_2_3418589    "0/1"          "1/1"          "0/0"         
## HiC_scaffold_2_3864060    "1/1"          NA             "0/0"         
## HiC_scaffold_2_4104755    "0/0"          "0/0"          "2|2"         
## HiC_scaffold_2_4104758    "0/0"          "0/0"          "2|2"         
## HiC_scaffold_2_8316721    "0|1"          "0|1"          NA            
## HiC_scaffold_2_9098999    "0/1"          "0/1"          "0/0"         
## HiC_scaffold_2_10457537   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_2_19048125   "1/1"          NA             "0/0"         
## HiC_scaffold_2_21748201   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_2_33187764   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_2_33187770   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_2_33187959   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_2_41603929   "1/1"          "0/0"          NA            
## HiC_scaffold_2_52233191   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_2_52400748   "1/1"          "1|1"          "1/1"         
## HiC_scaffold_2_52403793   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_2_52799130   "1/1"          NA             "1/1"         
## HiC_scaffold_20_10332897  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_20_17198418  "0/1"          "0/1"          "0/0"         
## HiC_scaffold_20_17915398  "0/0"          "1|1"          NA            
## HiC_scaffold_20_18872955  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_20_19055301  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_20_19150094  "1/1"          "0/1"          NA            
## HiC_scaffold_20_20651022  "1|1"          "0/0"          "0/1"         
## HiC_scaffold_20_22651296  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_21_2009156   "0|1"          "0|0"          "0|1"         
## HiC_scaffold_21_2435648   "0/1"          "1/1"          "1/1"         
## HiC_scaffold_21_7164210   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_21_9786512   "0/1"          "1/1"          "0/0"         
## HiC_scaffold_21_12424922  "1|1"          "1/1"          "1/1"         
## HiC_scaffold_21_17966833  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_21_19025429  "1/1"          NA             "1/1"         
## HiC_scaffold_21_20058318  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_21_20562855  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_21_20661860  "0/0"          "0/1"          "1|1"         
## HiC_scaffold_21_20895395  "0/0"          "0|1"          "1|1"         
## HiC_scaffold_21_21158811  "1|1"          "2|2"          "1|1"         
## HiC_scaffold_21_22250857  "0/1"          "0/1"          "0|1"         
## HiC_scaffold_21_22250866  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_21_22257737  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_21_22644667  "1|1"          "1|1"          NA            
## HiC_scaffold_21_22644673  "1|1"          "1|1"          NA            
## HiC_scaffold_21_22666888  "0/0"          NA             "0/0"         
## HiC_scaffold_21_23905416  "1|1"          "0/1"          "1|1"         
## HiC_scaffold_21_23981651  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_21_24287068  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_21_30798434  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_21_35006232  "0/0"          NA             "1/1"         
## HiC_scaffold_21_35779294  "1/1"          "0/0"          "1|1"         
## HiC_scaffold_22_124910    "0/0"          "0/1"          "0/0"         
## HiC_scaffold_22_751023    "0/0"          "1|1"          "1/1"         
## HiC_scaffold_22_1042644   NA             NA             "0/0"         
## HiC_scaffold_22_1044708   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_22_2174911   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_22_3431122   NA             "0/0"          "0|1"         
## HiC_scaffold_22_3446787   "0/0"          "0|1"          "1|1"         
## HiC_scaffold_22_3451756   NA             "0/0"          NA            
## HiC_scaffold_22_3720435   "1/1"          "0/0"          "0/1"         
## HiC_scaffold_22_4065466   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_22_4739889   "0/0"          NA             "1|1"         
## HiC_scaffold_22_4918263   "0|1"          "0/0"          "0/0"         
## HiC_scaffold_22_5750008   "1/1"          "1/1"          NA            
## HiC_scaffold_22_5769942   "0/0"          "1|1"          NA            
## HiC_scaffold_22_28264522  "0/0"          "0/0"          NA            
## HiC_scaffold_22_28265115  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_22_29205851  NA             "2/2"          NA            
## HiC_scaffold_22_29822340  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_22_30797357  "0|1"          "1/1"          "0/0"         
## HiC_scaffold_22_32042610  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_23_11215327  "0/0"          NA             "0/0"         
## HiC_scaffold_23_27081333  "1/1"          "0|1"          "0|1"         
## HiC_scaffold_23_28672255  "1/1"          "0/1"          "0/1"         
## HiC_scaffold_23_29218828  "0/1"          "0|1"          NA            
## HiC_scaffold_23_32528768  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_23_32669383  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_23_33199663  NA             "1/1"          "0/1"         
## HiC_scaffold_23_33245843  NA             "0/0"          "0/1"         
## HiC_scaffold_23_40824545  "0/0"          NA             NA            
## HiC_scaffold_23_41504669  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_24_16622654  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_24_16622681  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_24_19851560  "1|1"          NA             "1|1"         
## HiC_scaffold_24_20590563  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_24_27745754  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_24_28763699  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_24_28763703  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_25_4135969   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_25_4201677   "0/1"          NA             NA            
## HiC_scaffold_25_5872831   "0/0"          "0/1"          "0/1"         
## HiC_scaffold_25_6879627   NA             "1/1"          "0/0"         
## HiC_scaffold_25_8172813   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_25_9969507   NA             "1|1"          "0/1"         
## HiC_scaffold_25_10691336  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_25_21286462  "1/1"          NA             "0/0"         
## HiC_scaffold_26_4086662   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_26_7539671   "1|1"          "0/0"          "0/1"         
## HiC_scaffold_26_8348511   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_26_9043748   "1|1"          "1|1"          NA            
## HiC_scaffold_26_9045655   "1|1"          "0/0"          "1/1"         
## HiC_scaffold_26_11253181  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_26_17828344  "1/1"          "1/1"          "1|1"         
## HiC_scaffold_26_17932520  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_26_17941459  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_26_17960877  "1|1"          "1/1"          "1/1"         
## HiC_scaffold_26_18284041  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_26_18288701  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_26_18294422  "0/0"          "1/1"          "0|0"         
## HiC_scaffold_26_21307365  "0/0"          NA             "1/1"         
## HiC_scaffold_26_22159924  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_26_22161535  "1/1"          "1/1"          "1|1"         
## HiC_scaffold_26_24794176  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_26_28538113  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_26_29031357  "1/1"          "1|1"          "1/1"         
## HiC_scaffold_26_29163462  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_26_42631018  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_26_42634814  "1/1"          "1/1"          NA            
## HiC_scaffold_26_43483190  "0/0"          NA             "0/0"         
## HiC_scaffold_26_49955889  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_26_58342510  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_27_1496120   "0/0"          NA             "0/0"         
## HiC_scaffold_27_1947057   NA             "0/0"          "0/0"         
## HiC_scaffold_27_2359058   "0|1"          "1|1"          "1|1"         
## HiC_scaffold_27_2699645   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_27_4425475   "1|1"          NA             "1|1"         
## HiC_scaffold_27_7539469   NA             "0/0"          NA            
## HiC_scaffold_27_7777122   "1|1"          "0/1"          "0/1"         
## HiC_scaffold_27_16657070  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_27_24539255  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_27_34642359  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_27_34647277  "0/0"          "0/0"          "2|2"         
## HiC_scaffold_27_35380535  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_27_35383230  NA             "0/0"          "0/0"         
## HiC_scaffold_28_21261390  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_28_24490442  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_28_25601927  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_28_31793968  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_28_32126687  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_28_34779518  "0/0"          NA             "1/1"         
## HiC_scaffold_28_36042491  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_28_36692361  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_28_38672993  "0/1"          "0/1"          "0/0"         
## HiC_scaffold_28_39640526  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_28_40169242  "1/1"          NA             "1/1"         
## HiC_scaffold_28_41059640  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_28_42514830  "0/1"          "0/0"          "1|1"         
## HiC_scaffold_28_42601570  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_28_42601585  "0/1"          "1/1"          NA            
## HiC_scaffold_28_43018803  "1/1"          "1/1"          NA            
## HiC_scaffold_28_43036165  "0/1"          "0/1"          "0/1"         
## HiC_scaffold_29_344317    "0/0"          "0/0"          "1/1"         
## HiC_scaffold_29_3811176   NA             "1/1"          "1/1"         
## HiC_scaffold_29_6073993   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_29_6415222   "0/0"          "0/0"          NA            
## HiC_scaffold_29_8224424   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_29_11153624  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_29_11153712  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_29_11167966  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_29_11491468  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_29_12103558  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_29_14279322  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_29_14913907  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_29_16378276  "1/1"          NA             "1/1"         
## HiC_scaffold_29_20635937  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_29_20636787  NA             "0/0"          "0/1"         
## HiC_scaffold_29_22560215  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_29_22561144  "1/1"          "0|1"          "0/0"         
## HiC_scaffold_29_24017849  "0/0"          "2|2"          NA            
## HiC_scaffold_29_31603590  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_3_21670751   NA             "1/1"          "1/1"         
## HiC_scaffold_3_24747014   "0/1"          "0/1"          "0/0"         
## HiC_scaffold_3_27861792   "0/1"          NA             "0/0"         
## HiC_scaffold_3_28057869   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_3_28441436   "0/0"          "1/1"          NA            
## HiC_scaffold_3_28694380   "0/0"          "0/0"          NA            
## HiC_scaffold_3_31361023   "0/1"          "0/0"          "0|1"         
## HiC_scaffold_3_31960572   "0/1"          "1|1"          "1|1"         
## HiC_scaffold_3_32157169   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_3_32159152   "1/1"          "0/1"          "0/0"         
## HiC_scaffold_3_34124237   "0/0"          "1/1"          "1|1"         
## HiC_scaffold_30_14199802  "0/1"          NA             "1/1"         
## HiC_scaffold_30_16052331  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_30_19914075  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_30_20688783  "1/1"          "0/0"          NA            
## HiC_scaffold_30_21446076  "0/0"          "0/2"          "0/0"         
## HiC_scaffold_30_21598563  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_30_22155728  "0/0"          "1|1"          NA            
## HiC_scaffold_31_687411    "0/0"          "0/0"          NA            
## HiC_scaffold_31_3224722   "0/1"          "1/1"          "0/0"         
## HiC_scaffold_31_3574854   "0/1"          "0/0"          "1/1"         
## HiC_scaffold_31_5899551   "1/1"          "1/1"          "1|1"         
## HiC_scaffold_31_5911491   "1|1"          "0|0"          "0/0"         
## HiC_scaffold_31_6297680   NA             "0/0"          "0/0"         
## HiC_scaffold_31_12394016  "1|1"          "1/1"          "1/1"         
## HiC_scaffold_31_12394040  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_31_18612650  "0/0"          "0/0"          NA            
## HiC_scaffold_32_4446859   NA             "0/0"          "1/1"         
## HiC_scaffold_32_5274796   NA             "0/1"          "1/1"         
## HiC_scaffold_32_5275108   "0/0"          "0/1"          "0/0"         
## HiC_scaffold_32_5282358   "1/1"          NA             "0/0"         
## HiC_scaffold_32_5450203   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_32_44200178  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_33_638523    "0/0"          "0/0"          "0/0"         
## HiC_scaffold_33_44489563  "0/1"          "0/1"          NA            
## HiC_scaffold_33_44489988  "1/1"          NA             NA            
## HiC_scaffold_33_47080180  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_33_47495907  "0/1"          "1|1"          "0/0"         
## HiC_scaffold_33_51865876  "1/1"          "0/0"          NA            
## HiC_scaffold_34_1096982   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_34_6091943   "1|1"          "0/0"          "0|1"         
## HiC_scaffold_34_6100160   "1|1"          "0/0"          NA            
## HiC_scaffold_34_24368584  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_35_3233120   NA             "0/1"          NA            
## HiC_scaffold_35_3253574   "0/1"          "0/0"          "0|1"         
## HiC_scaffold_35_5512296   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_35_15114788  "1|1"          "1/1"          NA            
## HiC_scaffold_35_21214090  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_35_21462564  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_35_22746783  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_35_22747085  "0/0"          "0/1"          NA            
## HiC_scaffold_35_23059580  NA             NA             "0/0"         
## HiC_scaffold_35_23158882  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_35_23261143  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_35_24403602  NA             "1|1"          NA            
## HiC_scaffold_35_24403620  NA             "1|1"          NA            
## HiC_scaffold_35_24993986  "0/1"          "0/1"          "1/1"         
## HiC_scaffold_35_24993998  "0/0"          "0|1"          "0/0"         
## HiC_scaffold_36_1538038   "0/1"          "0/1"          "0/0"         
## HiC_scaffold_36_2464728   "0/1"          "0|1"          "0/1"         
## HiC_scaffold_36_5489050   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_36_9673981   "0|1"          "0/0"          "0/0"         
## HiC_scaffold_36_9674127   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_36_9674756   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_36_9676329   "0/1"          "1/1"          "1/1"         
## HiC_scaffold_36_12304516  "0/0"          NA             "0/0"         
## HiC_scaffold_36_12515555  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_36_13092647  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_36_13766994  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_36_14567741  "1/1"          "1/1"          NA            
## HiC_scaffold_36_15530578  "0/1"          "1|1"          "1|1"         
## HiC_scaffold_37_679894    NA             "1/1"          "1/1"         
## HiC_scaffold_37_916693    "1|1"          NA             "0/0"         
## HiC_scaffold_37_928146    "0/0"          "0/1"          "1/1"         
## HiC_scaffold_37_1256768   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_37_1270034   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_37_1770997   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_37_1798298   "1/1"          "1|1"          "0/1"         
## HiC_scaffold_37_2010342   "1|1"          NA             "1|1"         
## HiC_scaffold_37_2141526   "1/1"          "0/0"          "0/1"         
## HiC_scaffold_37_3952190   NA             "0/0"          "0/1"         
## HiC_scaffold_37_3952215   NA             "0/0"          NA            
## HiC_scaffold_37_9915037   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_38_5383430   "1/1"          "0/1"          "0/1"         
## HiC_scaffold_38_5668363   "1/1"          "1/1"          "0/1"         
## HiC_scaffold_38_5879849   "0/1"          "1/1"          "1/1"         
## HiC_scaffold_38_5880155   "0/0"          NA             "0/0"         
## HiC_scaffold_38_10612790  "1/1"          "1/1"          NA            
## HiC_scaffold_38_11940240  "0|1"          "2|2"          "0|1"         
## HiC_scaffold_38_12878826  NA             "0|1"          "0/0"         
## HiC_scaffold_38_12959698  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_38_13087368  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_38_13480648  "1/1"          "0|1"          "0/0"         
## HiC_scaffold_38_13965243  "1/1"          "1/1"          "1|1"         
## HiC_scaffold_38_14089955  "0/0"          "0/0"          NA            
## HiC_scaffold_38_14408072  NA             NA             NA            
## HiC_scaffold_38_14931216  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_38_14978356  "0/0"          NA             "0|1"         
## HiC_scaffold_38_14978367  "0/0"          NA             "0|1"         
## HiC_scaffold_38_15292863  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_38_15306135  "0/1"          "0/0"          "1|1"         
## HiC_scaffold_38_16077506  "0/0"          "0/0"          NA            
## HiC_scaffold_38_16138965  "1/1"          "1/1"          NA            
## HiC_scaffold_38_16226040  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_39_1393769   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_39_2014970   "0/0"          "1|1"          "0|1"         
## HiC_scaffold_39_2014982   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_39_2014985   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_39_2426443   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_39_2485330   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_39_3350506   "1|1"          "0/0"          NA            
## HiC_scaffold_39_5897388   "0/0"          "0|1"          "0/0"         
## HiC_scaffold_39_17631133  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_4_12107187   NA             NA             "0/1"         
## HiC_scaffold_4_18241670   "1|1"          "1|1"          NA            
## HiC_scaffold_4_18241723   "1/1"          "1|1"          "1|1"         
## HiC_scaffold_4_22418566   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_4_27899990   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_4_35575118   "0|1"          "0/0"          "0|1"         
## HiC_scaffold_4_38000967   "1/1"          "1/1"          "0/1"         
## HiC_scaffold_4_50654021   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_40_2243415   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_40_3000572   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_40_3014177   "1|1"          NA             "1|1"         
## HiC_scaffold_40_3027900   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_40_3143834   "0/0"          "0/0"          NA            
## HiC_scaffold_40_3843942   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_40_3847620   "0/0"          "0/1"          NA            
## HiC_scaffold_40_3891007   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_40_3920667   "2/2"          "1|1"          "2/2"         
## HiC_scaffold_40_4177963   "0/1"          "0/0"          "1/1"         
## HiC_scaffold_40_4819107   "0/1"          "1/1"          "0/1"         
## HiC_scaffold_40_4819834   "0|1"          "0|1"          NA            
## HiC_scaffold_40_5788271   "0/0"          "1/1"          "1/1"         
## HiC_scaffold_40_5965269   "0/0"          "1|1"          "1/1"         
## HiC_scaffold_40_6204154   "0/0"          "1/1"          NA            
## HiC_scaffold_40_8387917   "0/0"          "0/1"          "0/1"         
## HiC_scaffold_41_3235384   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_41_3583000   NA             "0/0"          "0/0"         
## HiC_scaffold_41_5334504   "1/1"          "0/1"          "1/1"         
## HiC_scaffold_41_5387631   "1|1"          "1|1"          NA            
## HiC_scaffold_41_6423426   "0/0"          NA             NA            
## HiC_scaffold_41_14359947  "1/1"          NA             NA            
## HiC_scaffold_41_24007593  "0/0"          "0|1"          "0/0"         
## HiC_scaffold_41_26225447  "0/0"          "0/1"          "1|1"         
## HiC_scaffold_41_28626484  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_41_28660620  NA             "0/0"          "0/0"         
## HiC_scaffold_41_31007688  NA             "0/0"          NA            
## HiC_scaffold_42_1131084   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_42_1818523   "0/1"          "0/0"          "0/1"         
## HiC_scaffold_42_2165002   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_42_2711332   "1|1"          "0/0"          NA            
## HiC_scaffold_42_6142699   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_42_6744976   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_42_8066919   "1|1"          "0|1"          NA            
## HiC_scaffold_42_8068292   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_42_12487888  NA             "0|1"          "1|1"         
## HiC_scaffold_42_41366687  "1/1"          "1/1"          NA            
## HiC_scaffold_42_47313337  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_42_47313338  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_42_50784971  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_42_50784977  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_42_50784981  "1/1"          "1/1"          NA            
## HiC_scaffold_42_51916989  "1/1"          "1/1"          NA            
## HiC_scaffold_43_3842003   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_43_14140861  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_43_15053605  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_43_17289945  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_43_29967704  "0/1"          "0/0"          NA            
## HiC_scaffold_43_35745831  "0/1"          "1|1"          "1|1"         
## HiC_scaffold_43_37627949  "0|1"          "0/1"          "0/1"         
## HiC_scaffold_43_37628126  NA             "1/1"          "0/1"         
## HiC_scaffold_43_44017118  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_43_55124138  "0/1"          "0/1"          "0/0"         
## HiC_scaffold_43_60107326  "0|1"          "0|1"          "0/0"         
## HiC_scaffold_43_61359386  "0/1"          NA             "1|1"         
## HiC_scaffold_43_61702593  "0|1"          "0|1"          "0|1"         
## HiC_scaffold_43_61702606  "0|1"          "0|1"          "0|1"         
## HiC_scaffold_43_61702721  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_43_61702738  "1/1"          "1/1"          NA            
## HiC_scaffold_43_62511703  "1|1"          "1|1"          NA            
## HiC_scaffold_43_64069457  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_43_64577269  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_44_1920144   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_44_2148035   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_44_2568167   "0/0"          "0/1"          "1/1"         
## HiC_scaffold_45_4180070   "0/0"          NA             "1/1"         
## HiC_scaffold_45_4797754   "1/1"          "0/1"          NA            
## HiC_scaffold_45_5911123   "0|1"          "1|1"          "0|0"         
## HiC_scaffold_45_6958990   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_45_8516216   "1|1"          NA             "1|1"         
## HiC_scaffold_45_10191213  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_45_12005885  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_45_12006766  "1/1"          NA             "1/1"         
## HiC_scaffold_45_24736172  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_45_24739830  NA             "0/0"          "0/0"         
## HiC_scaffold_46_9691567   "0/0"          "0|1"          "1|1"         
## HiC_scaffold_46_17380257  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_46_18387147  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_46_37092355  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_46_39183624  NA             "0/0"          "0/0"         
## HiC_scaffold_46_39390547  "1/1"          NA             "1/1"         
## HiC_scaffold_46_42964941  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_46_42986653  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_46_52074364  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_46_54255667  "1/1"          "1/1"          NA            
## HiC_scaffold_47_3750532   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_47_3751345   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_47_15400639  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_47_24072414  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_47_25273825  NA             "0|1"          "1|1"         
## HiC_scaffold_48_8752752   "0/0"          "1/2"          "0/1"         
## HiC_scaffold_48_10765920  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_48_16077918  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_48_16077940  "0/0"          "1|1"          "1/1"         
## HiC_scaffold_48_16411609  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_48_19972580  NA             "0/1"          NA            
## HiC_scaffold_48_23493079  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_48_23597210  "0/1"          NA             "0/0"         
## HiC_scaffold_48_24478493  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_48_24881148  "1/1"          NA             NA            
## HiC_scaffold_48_25865723  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_48_25984068  "0|1"          "1|1"          NA            
## HiC_scaffold_48_25989079  "1/1"          "0/1"          NA            
## HiC_scaffold_48_30601375  "1|1"          NA             NA            
## HiC_scaffold_48_31662115  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_48_41971562  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_49_3392801   "1|1"          "0/1"          "0/0"         
## HiC_scaffold_49_6101692   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_49_7996315   "0/0"          "0/0"          NA            
## HiC_scaffold_49_9470474   "0/1"          "0/1"          "1/1"         
## HiC_scaffold_49_9886007   NA             "1|1"          NA            
## HiC_scaffold_49_12592113  "0/0"          NA             "1/1"         
## HiC_scaffold_49_12741575  NA             "1/1"          NA            
## HiC_scaffold_49_15135019  "1/1"          NA             "1/1"         
## HiC_scaffold_49_25906219  NA             "0/0"          "0/0"         
## HiC_scaffold_49_26614199  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_49_26655554  "0/1"          "0/0"          NA            
## HiC_scaffold_49_37568341  "1|1"          NA             "0/0"         
## HiC_scaffold_49_37568353  "1|1"          NA             "0/0"         
## HiC_scaffold_49_40002255  NA             "0/1"          "1|1"         
## HiC_scaffold_49_40003229  "0/1"          "0|1"          "0/0"         
## HiC_scaffold_49_42966376  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_5_801252     "0/0"          "0/0"          NA            
## HiC_scaffold_5_1446603    "0|1"          "1|1"          "0|1"         
## HiC_scaffold_5_1446611    "0|1"          "1|1"          "0|1"         
## HiC_scaffold_5_1530759    "0/0"          "1/1"          "0/0"         
## HiC_scaffold_5_1539275    "0/0"          "0/0"          "0/0"         
## HiC_scaffold_5_1789576    "0/0"          "0/0"          "0|1"         
## HiC_scaffold_5_1808197    "0/1"          "1/1"          "1/1"         
## HiC_scaffold_5_1808204    "0/1"          "0/0"          "0/0"         
## HiC_scaffold_5_1943895    NA             "1|1"          "0/0"         
## HiC_scaffold_5_1944469    "0/0"          "1/1"          NA            
## HiC_scaffold_5_2857283    "0/0"          "1/1"          NA            
## HiC_scaffold_5_4061378    "0/1"          "0/0"          "1|1"         
## HiC_scaffold_5_4340647    "1|1"          "0/0"          "0/0"         
## HiC_scaffold_5_4435246    "1/1"          "0/0"          NA            
## HiC_scaffold_5_8868783    "1/1"          "0/0"          "1/1"         
## HiC_scaffold_50_4315969   "0/1"          "0/1"          NA            
## HiC_scaffold_50_11652296  "1/1"          "1|1"          "1/1"         
## HiC_scaffold_50_11657309  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_50_15521027  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_50_21050962  "0/1"          "1/1"          NA            
## HiC_scaffold_50_23686202  "0|1"          "0|1"          "1/1"         
## HiC_scaffold_50_27393462  "0/0"          "0/0"          NA            
## HiC_scaffold_50_42586883  "1|1"          "0/1"          NA            
## HiC_scaffold_50_45087211  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_50_49796550  "1/1"          NA             "1/1"         
## HiC_scaffold_50_54383367  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_50_63318678  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_51_3521000   "0/0"          "0/1"          "0/1"         
## HiC_scaffold_51_4681905   NA             "0/1"          "1/1"         
## HiC_scaffold_51_6305599   "0/1"          "1|1"          "2|2"         
## HiC_scaffold_51_8530818   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_51_11653312  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_51_13138547  "1/1"          "1/1"          "1|1"         
## HiC_scaffold_51_14457091  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_51_15512668  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_51_17816346  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_51_19997934  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_51_19997936  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_51_20870773  NA             "1/1"          "0/0"         
## HiC_scaffold_51_26660104  "0|1"          "1|1"          "0/0"         
## HiC_scaffold_51_40727521  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_51_40892841  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_51_41717519  "0/1"          "1/1"          "0/1"         
## HiC_scaffold_51_42547638  "1/1"          "1/1"          NA            
## HiC_scaffold_52_3335804   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_52_4149130   "1/1"          NA             "0/0"         
## HiC_scaffold_52_6893679   "1|1"          "1/1"          "1|1"         
## HiC_scaffold_52_13155416  "0/1"          "1/1"          NA            
## HiC_scaffold_52_13155437  "0|1"          "1|1"          NA            
## HiC_scaffold_52_13155442  "0|1"          "1|1"          NA            
## HiC_scaffold_52_14885688  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_52_14895078  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_52_15141791  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_52_15743051  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_52_15760201  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_52_15834589  "1|1"          NA             NA            
## HiC_scaffold_52_15841769  "0/0"          "1/1"          NA            
## HiC_scaffold_52_15862421  "1|1"          "0/0"          NA            
## HiC_scaffold_52_15970970  "0/0"          "0/2"          "0/1"         
## HiC_scaffold_52_16275237  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_52_16275240  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_52_16275290  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_52_16524164  "0|1"          "1|1"          "0/1"         
## HiC_scaffold_52_16524572  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_52_16525647  "0/1"          "0/1"          "0/0"         
## HiC_scaffold_52_16637047  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_52_17202127  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_52_17207724  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_52_17508820  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_52_17547593  "1/1"          "0/0"          NA            
## HiC_scaffold_52_17551239  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_52_17560696  "0|1"          "0|1"          NA            
## HiC_scaffold_52_17560699  "0|1"          "0|1"          NA            
## HiC_scaffold_52_17741250  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_52_17742260  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_52_18340578  "1/1"          "0/0"          NA            
## HiC_scaffold_52_18415911  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_52_22189517  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_52_22526592  "0/1"          "0/1"          NA            
## HiC_scaffold_52_26393471  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_52_26799380  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_52_31871931  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_52_31874283  "0|1"          "1|1"          "1|1"         
## HiC_scaffold_52_31874287  "0|1"          "1|1"          "1|1"         
## HiC_scaffold_52_32161053  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_52_33165557  "0/1"          "0/1"          NA            
## HiC_scaffold_52_33897620  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_52_34763156  "0|1"          "0/0"          "1|1"         
## HiC_scaffold_52_34763171  "0/1"          "0/0"          NA            
## HiC_scaffold_52_35174755  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_52_35608453  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_52_35608470  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_52_39464728  "1|1"          "0|1"          "0/0"         
## HiC_scaffold_52_42141354  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_52_44675725  "1/1"          "1/1"          "0|1"         
## HiC_scaffold_52_49935920  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_53_21789524  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_53_25168042  "0|1"          "1/1"          "0/0"         
## HiC_scaffold_53_26398989  "0/0"          NA             "0/0"         
## HiC_scaffold_53_26398992  "0/0"          NA             "0/0"         
## HiC_scaffold_53_26398994  "0/0"          NA             "0/0"         
## HiC_scaffold_53_26549665  "0/0"          "0/0"          NA            
## HiC_scaffold_53_29227676  "1|1"          "0/0"          "0|1"         
## HiC_scaffold_53_31250349  "1/1"          NA             "1/1"         
## HiC_scaffold_54_530581    NA             "1|1"          "0/0"         
## HiC_scaffold_54_794095    "0/0"          NA             "1|1"         
## HiC_scaffold_54_1171109   "0|1"          "1|1"          "1|1"         
## HiC_scaffold_54_1378956   "1/1"          "0|1"          "1/1"         
## HiC_scaffold_54_1380539   NA             "0/1"          "1/1"         
## HiC_scaffold_54_3045015   "0/1"          "1/1"          "0/0"         
## HiC_scaffold_54_3185987   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_54_4401098   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_54_5595903   "0/1"          "0/0"          NA            
## HiC_scaffold_54_5595921   "0/1"          NA             NA            
## HiC_scaffold_54_5595928   "0/0"          "0/0"          NA            
## HiC_scaffold_54_5595949   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_54_6649662   "0/1"          "1/1"          "1/1"         
## HiC_scaffold_54_8036734   "0|1"          "0/0"          "0|1"         
## HiC_scaffold_54_9206614   "0/1"          "0/0"          NA            
## HiC_scaffold_54_35913192  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_54_35913282  "0|1"          "0/1"          "0|1"         
## HiC_scaffold_54_35913283  "1/1"          "0|1"          "0|1"         
## HiC_scaffold_55_1260491   "0/1"          NA             "1/1"         
## HiC_scaffold_55_3254027   "1/1"          "0/1"          "0/0"         
## HiC_scaffold_55_3281985   "1|1"          "1|1"          NA            
## HiC_scaffold_55_5409544   NA             "0/0"          "0/0"         
## HiC_scaffold_55_5411094   "1|1"          "1|1"          NA            
## HiC_scaffold_55_5411115   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_55_18121799  "0/1"          "1/1"          "0/1"         
## HiC_scaffold_55_19605809  "0/0"          "0|1"          NA            
## HiC_scaffold_55_19605817  "1|1"          "0|1"          "0/0"         
## HiC_scaffold_55_19605821  "1|1"          "1/1"          "1/1"         
## HiC_scaffold_55_20195204  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_55_20886967  "0/0"          "0/1"          NA            
## HiC_scaffold_55_23222937  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_55_23626331  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_55_24539590  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_55_24585939  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_55_34174151  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_56_17874332  "0/0"          NA             "0/1"         
## HiC_scaffold_56_18635259  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_56_23654344  NA             "0/1"          "0/0"         
## HiC_scaffold_56_35850533  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_56_35850539  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_56_40813556  "0/0"          "1/1"          NA            
## HiC_scaffold_56_53211633  "0/1"          NA             "0/0"         
## HiC_scaffold_56_60070829  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_56_73286017  "1|1"          NA             "0/0"         
## HiC_scaffold_56_73829442  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_56_73829443  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_56_76060304  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_57_25306408  NA             "0/0"          "1/1"         
## HiC_scaffold_57_29222385  "0/0"          "0|1"          "0/0"         
## HiC_scaffold_57_29592432  NA             "0/0"          "0/0"         
## HiC_scaffold_57_31472698  "0/0"          NA             "0/0"         
## HiC_scaffold_57_32371742  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_57_36495072  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_57_37286264  "1/1"          "0/0"          NA            
## HiC_scaffold_57_38537415  "0/0"          NA             "0/1"         
## HiC_scaffold_57_45438854  "1|1"          "1|1"          "2|2"         
## HiC_scaffold_57_52856874  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_57_53575355  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_57_55856783  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_58_1362614   "0/1"          "0/0"          "1/1"         
## HiC_scaffold_58_1432845   "1/1"          "1|1"          "1/1"         
## HiC_scaffold_58_1541720   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_58_2777120   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_58_2973169   NA             NA             "1/1"         
## HiC_scaffold_58_3243043   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_58_4035282   "0/0"          "1/1"          "0/1"         
## HiC_scaffold_58_5442157   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_58_8004631   "0/0"          "1/1"          "0/1"         
## HiC_scaffold_58_8058998   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_58_8932837   "1/1"          "0/1"          "0/0"         
## HiC_scaffold_58_14814944  "1/1"          "0/0"          NA            
## HiC_scaffold_58_15639988  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_58_15707198  NA             "0/0"          "1/1"         
## HiC_scaffold_58_15707258  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_58_15710623  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_58_19155063  "0/0"          NA             NA            
## HiC_scaffold_58_20224050  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_58_38475355  NA             "1/1"          "1/1"         
## HiC_scaffold_59_3979055   "1/1"          "0/1"          "0/1"         
## HiC_scaffold_59_5071810   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_59_5349936   "1/1"          "1/1"          NA            
## HiC_scaffold_59_5350114   "0/1"          NA             "0/1"         
## HiC_scaffold_59_7738302   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_59_7738351   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_59_7958561   NA             "0/0"          "0/0"         
## HiC_scaffold_59_9273798   "0/0"          "0/1"          "0/0"         
## HiC_scaffold_59_50928099  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_59_52960060  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_6_10569023   NA             "0/0"          "0/0"         
## HiC_scaffold_6_10711445   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_6_13209200   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_6_13213107   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_6_13311684   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_6_15670783   "0/0"          NA             "1|1"         
## HiC_scaffold_6_19111232   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_6_32805498   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_6_38793174   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_6_41092101   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_6_41342933   "1/1"          NA             "0/1"         
## HiC_scaffold_6_47594508   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_60_70878     "1|1"          "1|1"          "0/0"         
## HiC_scaffold_60_99549     "0/0"          NA             NA            
## HiC_scaffold_60_201823    "1/1"          "1/1"          "1/1"         
## HiC_scaffold_60_712969    NA             "1|1"          "1|1"         
## HiC_scaffold_60_744783    NA             "1/1"          NA            
## HiC_scaffold_60_744788    NA             "1/1"          "0/0"         
## HiC_scaffold_60_22142128  NA             "1/1"          "1|1"         
## HiC_scaffold_60_27599770  NA             "1/1"          "1/1"         
## HiC_scaffold_60_30608878  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_60_32657324  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_60_32672580  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_60_38856893  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_60_39028335  "1/1"          "0/0"          NA            
## HiC_scaffold_60_40296869  "0/0"          "0/1"          NA            
## HiC_scaffold_60_42775723  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_60_44687906  "0/1"          "1/1"          NA            
## HiC_scaffold_60_44804601  NA             "0/0"          "0/0"         
## HiC_scaffold_60_53696867  "0|1"          "1|1"          "0/0"         
## HiC_scaffold_60_53696868  "0|1"          "1|1"          "0/0"         
## HiC_scaffold_60_60651515  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_60_70678462  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_61_2205328   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_61_2491706   "1/1"          "1|1"          "1|1"         
## HiC_scaffold_61_4009916   "0/0"          NA             "0/0"         
## HiC_scaffold_61_4062917   "0/0"          "0/0"          "2/2"         
## HiC_scaffold_61_4122763   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_61_4216461   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_61_4325053   "1/1"          "0/1"          "0/0"         
## HiC_scaffold_61_9004838   "1|1"          "1|1"          NA            
## HiC_scaffold_61_14635083  "0/0"          "1|1"          "1/1"         
## HiC_scaffold_62_1128608   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_62_11335200  "0/0"          "0|0"          "0|1"         
## HiC_scaffold_62_18828476  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_62_21548870  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_62_23103274  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_62_25793456  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_62_25887474  "0/1"          NA             "0/0"         
## HiC_scaffold_62_28516096  "0|1"          "1|1"          "0/0"         
## HiC_scaffold_62_28516099  "0|1"          "1|1"          "0/0"         
## HiC_scaffold_62_28818725  "1|1"          NA             "0|1"         
## HiC_scaffold_62_28818729  "0/0"          NA             "0/0"         
## HiC_scaffold_62_45207353  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_63_3092269   "1/1"          "1/1"          NA            
## HiC_scaffold_63_3977940   "0/0"          "0/0"          NA            
## HiC_scaffold_63_4084937   "1/1"          NA             "0/1"         
## HiC_scaffold_63_4196326   "1|1"          NA             "0|1"         
## HiC_scaffold_63_6262453   "0/1"          "0/1"          "0/0"         
## HiC_scaffold_63_6350204   "1/1"          "0/1"          "1/1"         
## HiC_scaffold_63_6458794   "0|1"          "0/1"          "0|1"         
## HiC_scaffold_64_9162978   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_64_16876561  "0/0"          NA             "0/0"         
## HiC_scaffold_64_17543009  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_64_18925356  "1/1"          "0/0"          NA            
## HiC_scaffold_64_19133050  "1|1"          "0/0"          NA            
## HiC_scaffold_64_19627769  "1|1"          NA             "1|1"         
## HiC_scaffold_64_20477250  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_64_22816677  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_64_22954654  "1|1"          NA             NA            
## HiC_scaffold_64_22954658  "1|1"          NA             NA            
## HiC_scaffold_64_22954682  "1/1"          NA             NA            
## HiC_scaffold_65_6829971   "1/1"          "0/0"          NA            
## HiC_scaffold_65_8071102   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_65_9023979   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_65_9839671   "0/0"          "0/0"          NA            
## HiC_scaffold_65_10404778  "0/0"          "0/0"          NA            
## HiC_scaffold_65_11327791  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_65_11332104  "1/1"          "0/0"          NA            
## HiC_scaffold_65_34823822  "1|1"          NA             NA            
## HiC_scaffold_65_51418017  "1/1"          "0/1"          "1|1"         
## HiC_scaffold_65_54053979  "1|1"          NA             "1|1"         
## HiC_scaffold_65_57110875  "0/0"          "1|1"          NA            
## HiC_scaffold_66_15615363  "1|1"          "0/0"          "1/1"         
## HiC_scaffold_66_15672090  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_66_17903445  "1|1"          NA             "0/0"         
## HiC_scaffold_66_18298629  "1|1"          NA             "0/0"         
## HiC_scaffold_66_19730676  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_66_23688768  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_66_26614535  NA             "0/0"          "0/0"         
## HiC_scaffold_66_27445665  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_66_29457165  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_66_29457180  "1|1"          "1|1"          "1/1"         
## HiC_scaffold_66_30116287  "1/1"          "1|1"          "1/1"         
## HiC_scaffold_66_31603503  NA             "0/0"          "0/0"         
## HiC_scaffold_66_33261460  "0|1"          "1/1"          "0/0"         
## HiC_scaffold_66_34138981  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_66_34139020  "0/1"          NA             "0|1"         
## HiC_scaffold_66_34142862  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_67_1404390   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_67_28493665  "0/0"          NA             "0/0"         
## HiC_scaffold_67_30243885  "0/0"          NA             "0/1"         
## HiC_scaffold_67_31511806  "0/0"          "0/0"          NA            
## HiC_scaffold_67_34638092  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_67_37534720  "0/1"          "0/1"          "1/1"         
## HiC_scaffold_67_39679546  "0/1"          NA             "0/0"         
## HiC_scaffold_67_39854918  "0/1"          "0/1"          "1|1"         
## HiC_scaffold_67_39860738  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_67_40331656  "0/0"          "0/0"          NA            
## HiC_scaffold_67_40824747  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_68_3438132   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_68_3438133   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_68_11206902  "0/0"          "0/0"          NA            
## HiC_scaffold_68_32770607  "1|1"          "1|1"          NA            
## HiC_scaffold_68_34016823  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_68_34020019  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_68_40296057  "0|1"          "0/0"          "1|1"         
## HiC_scaffold_68_40296059  "0|1"          "0/0"          "1|1"         
## HiC_scaffold_68_65001879  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_69_23311147  "1/1"          "0/0"          NA            
## HiC_scaffold_69_27351303  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_69_29437208  "1/1"          "0|1"          "0/0"         
## HiC_scaffold_69_33699381  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_69_40194698  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_69_48273575  "1/1"          "1/1"          NA            
## HiC_scaffold_69_48348026  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_69_48348034  "0/0"          "0|1"          "0/0"         
## HiC_scaffold_69_49563252  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_69_49593952  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_69_49859037  "1|1"          "1|1"          "0|1"         
## HiC_scaffold_69_51271238  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_69_51529836  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_69_57313650  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_69_57359194  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_6951_523650  "1/1"          NA             "1/1"         
## HiC_scaffold_6951_897126  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_6951_1134482 NA             "0/0"          "1|1"         
## HiC_scaffold_6951_2484960 "0/0"          "0/0"          "1/1"         
## HiC_scaffold_6951_3301273 "0/0"          "1|1"          "1/1"         
## HiC_scaffold_6951_3314609 "1/1"          NA             "1/1"         
## HiC_scaffold_6951_3945993 "0/0"          "1|1"          "0/0"         
## HiC_scaffold_6958_218293  "0/2"          "0/0"          "0|1"         
## HiC_scaffold_6958_449143  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_7_351023     "1/1"          "0/0"          NA            
## HiC_scaffold_7_488024     "0/0"          "0/0"          "1|1"         
## HiC_scaffold_7_492663     "0/1"          "0/1"          "0/0"         
## HiC_scaffold_7_693567     "0/0"          "0/0"          "0/0"         
## HiC_scaffold_7_2379128    "0/0"          "0/0"          "1/1"         
## HiC_scaffold_7_3087721    "1/1"          "0/1"          "1|1"         
## HiC_scaffold_7_3394880    "0/1"          "1/1"          "1/1"         
## HiC_scaffold_7_22247106   "0/0"          "0/1"          "0/0"         
## HiC_scaffold_70_4632611   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_70_14042778  "1/1"          NA             "0/0"         
## HiC_scaffold_71_410844    "0/0"          "0|1"          "0/0"         
## HiC_scaffold_71_1753451   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_71_2283682   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_71_3439685   "0|2"          NA             "0/1"         
## HiC_scaffold_71_17850462  "1/1"          "1|1"          "0/1"         
## HiC_scaffold_71_20588314  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_71_25465351  "1|1"          "0|1"          NA            
## HiC_scaffold_71_25465352  "1|1"          "0|1"          NA            
## HiC_scaffold_71_26356062  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_72_11785096  "0/1"          "0/1"          "1/1"         
## HiC_scaffold_72_17285854  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_72_23704999  NA             NA             "0/1"         
## HiC_scaffold_72_24465318  "0|1"          "0/0"          "0|1"         
## HiC_scaffold_72_30457277  NA             "1/1"          "0/0"         
## HiC_scaffold_72_32068649  NA             "0/0"          "0|1"         
## HiC_scaffold_72_35058295  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_72_36024997  "0|1"          "0/0"          "1|1"         
## HiC_scaffold_72_37135067  "0|1"          NA             "1|1"         
## HiC_scaffold_72_38410141  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_72_38448056  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_72_41412511  NA             "0/1"          "0/0"         
## HiC_scaffold_73_2192629   "1|1"          "0/0"          NA            
## HiC_scaffold_73_2920208   "0|1"          "0/0"          "0|1"         
## HiC_scaffold_73_4522493   NA             "1/1"          "1/1"         
## HiC_scaffold_73_4748625   "1/1"          "0/1"          "0/0"         
## HiC_scaffold_73_5839336   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_73_9338582   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_73_27393859  "0|1"          "0/0"          "0/1"         
## HiC_scaffold_74_14235619  "0/0"          "1/1"          NA            
## HiC_scaffold_74_14515598  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_74_15116121  "0|1"          "0/0"          "1|1"         
## HiC_scaffold_74_17233613  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_74_17725340  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_74_18418135  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_74_18418138  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_74_21254425  "1/1"          NA             "0/1"         
## HiC_scaffold_74_22261065  "0/0"          "0/0"          NA            
## HiC_scaffold_74_47132519  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_74_50979096  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_74_51060549  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_74_53256803  "1/1"          "1/1"          NA            
## HiC_scaffold_74_55464169  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_74_55515512  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_74_55999260  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_74_57404902  "0/1"          "0/1"          "0/0"         
## HiC_scaffold_74_58181927  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_74_58198600  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_74_63060195  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_75_5345466   NA             "0/1"          "0/0"         
## HiC_scaffold_75_5346522   "0/0"          "1/1"          NA            
## HiC_scaffold_75_5346535   "0/0"          "1/1"          NA            
## HiC_scaffold_75_9850973   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_76_27149820  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_76_31582908  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_76_31792815  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_76_35352820  NA             "1|1"          "0|1"         
## HiC_scaffold_76_57782171  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_76_59862401  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_76_61095594  "0/1"          "0/0"          NA            
## HiC_scaffold_76_65496128  "1/1"          "0/1"          NA            
## HiC_scaffold_76_68965847  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_76_68966411  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_76_69823482  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_76_73343841  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_77_3598274   "1|1"          NA             "0/0"         
## HiC_scaffold_77_6982137   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_77_11021994  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_77_13608165  NA             "0/0"          NA            
## HiC_scaffold_77_16888594  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_77_16888623  "0/0"          "0/0"          NA            
## HiC_scaffold_77_16889448  "1/1"          "0/1"          "0/1"         
## HiC_scaffold_77_39784685  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_77_44375866  "0/0"          "0/0"          NA            
## HiC_scaffold_77_45385370  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_78_5719919   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_78_11353297  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_78_27316392  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_78_48124809  "2/2"          "1/1"          "0/0"         
## HiC_scaffold_78_48124826  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_78_48126176  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_78_48279096  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_78_48434558  "0/0"          "1|1"          NA            
## HiC_scaffold_78_49759181  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_78_49759192  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_78_49759215  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_78_51364025  "1/1"          NA             "1/1"         
## HiC_scaffold_78_55395445  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_78_59610866  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_78_62136661  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_79_1643780   "0|1"          "0/0"          NA            
## HiC_scaffold_79_2519178   "0/0"          "1/1"          "1/1"         
## HiC_scaffold_79_2858100   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_79_3922454   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_79_4127878   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_79_4543693   "0/0"          "0/0"          NA            
## HiC_scaffold_79_11507678  "0/1"          "0/1"          "0/0"         
## HiC_scaffold_79_12618812  "0/0"          NA             "1/1"         
## HiC_scaffold_79_14185404  "1|1"          "0/1"          "1|1"         
## HiC_scaffold_79_17120237  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_79_17120254  "0/1"          "0/1"          "0/1"         
## HiC_scaffold_79_35551507  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_79_35551543  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_79_38927423  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_79_42623307  "0|1"          NA             "1|1"         
## HiC_scaffold_79_43179786  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_79_43180099  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_79_43828078  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_79_43872513  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_79_44627215  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_79_50772769  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_79_55468575  "0/1"          NA             NA            
## HiC_scaffold_79_55816114  "1/1"          NA             NA            
## HiC_scaffold_79_59915784  "1|1"          "0/0"          "0/1"         
## HiC_scaffold_79_60165298  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_79_60165305  "0|1"          "0/0"          NA            
## HiC_scaffold_79_69145556  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_79_70208305  "0|1"          NA             "0|1"         
## HiC_scaffold_79_73412292  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_79_73416663  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_79_73416688  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_79_76863102  "0/1"          "0/1"          "0/1"         
## HiC_scaffold_79_81279649  "0/0"          "0|1"          "0/0"         
## HiC_scaffold_79_81499990  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_79_82319836  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_79_82319849  "1|1"          "0/1"          "1|1"         
## HiC_scaffold_79_83163707  "0/1"          "0/1"          "1/1"         
## HiC_scaffold_79_86283512  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_79_87123758  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_79_88362889  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_79_88599431  "0/0"          "1/1"          NA            
## HiC_scaffold_79_89322919  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_79_89331918  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_79_91340958  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_8_13649836   "0|1"          "1|1"          "1/1"         
## HiC_scaffold_8_13650752   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_8_23818233   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_8_24123972   "1|1"          "0/0"          NA            
## HiC_scaffold_8_24230791   "0/1"          "0/0"          "0|1"         
## HiC_scaffold_8_24588423   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_8_25348483   "0/0"          "1/1"          NA            
## HiC_scaffold_8_25421933   "1/1"          "1/1"          "0/1"         
## HiC_scaffold_8_25772942   "1/1"          "0/1"          "0/0"         
## HiC_scaffold_8_26289589   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_8_27602740   "0/0"          "0/0"          "0|1"         
## HiC_scaffold_8_28159063   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_8_30829320   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_8_31044084   "0/0"          NA             "0/0"         
## HiC_scaffold_8_31415507   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_8_32594682   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_80_3617847   "1/1"          "0|1"          NA            
## HiC_scaffold_80_5758183   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_80_6760006   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_80_6760037   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_80_7772622   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_80_7919533   "0/0"          "2|2"          "0/0"         
## HiC_scaffold_80_8110052   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_80_8193366   NA             "1/1"          "1/1"         
## HiC_scaffold_80_8625784   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_80_8912846   "0/0"          "0/1"          "0/0"         
## HiC_scaffold_80_9544102   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_80_10770701  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_80_11590146  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_80_16953653  "0/1"          "0/1"          "0/1"         
## HiC_scaffold_80_18938832  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_80_19015946  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_80_19404001  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_80_25346708  "0/1"          "0/1"          "1|1"         
## HiC_scaffold_80_37479851  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_80_37507516  "1/1"          "0/1"          "0/1"         
## HiC_scaffold_81_1187192   "0/0"          "1/1"          "0/1"         
## HiC_scaffold_81_2689826   "0|1"          "0|1"          "1|1"         
## HiC_scaffold_81_2690751   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_81_6614123   "0/1"          "0/1"          "0/1"         
## HiC_scaffold_81_7836855   "0/1"          "0/0"          "0/1"         
## HiC_scaffold_81_10334868  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_81_10458752  "0/1"          NA             "1/1"         
## HiC_scaffold_81_17515538  "1|1"          "1/1"          NA            
## HiC_scaffold_81_40271282  NA             "0/0"          "0/0"         
## HiC_scaffold_81_40271294  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_81_41096427  "0|1"          "0/0"          "0|1"         
## HiC_scaffold_81_41096444  "0|1"          "0/0"          "0|1"         
## HiC_scaffold_81_43820595  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_81_43820732  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_81_43854278  "0/0"          NA             "0/1"         
## HiC_scaffold_81_44804862  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_81_45063428  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_81_45950590  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_81_46714752  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_81_46714759  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_81_47170397  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_81_47628201  "0|1"          NA             "1|1"         
## HiC_scaffold_81_48105216  "1|1"          NA             "0/0"         
## HiC_scaffold_81_48932070  "0/0"          "0/0"          NA            
## HiC_scaffold_81_54050146  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_82_5672063   "0/0"          "1/1"          "1/1"         
## HiC_scaffold_82_8796823   "0/0"          "0/1"          NA            
## HiC_scaffold_82_13450959  "0/1"          "0/1"          "0/0"         
## HiC_scaffold_82_26144442  "0/0"          "1/1"          NA            
## HiC_scaffold_82_26147011  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_82_28907834  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_82_34413793  "0|1"          "1/1"          "1|1"         
## HiC_scaffold_82_34413800  "0/0"          "1/1"          "1|1"         
## HiC_scaffold_82_36173035  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_82_40539273  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_82_41470256  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_83_23993605  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_83_35035961  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_83_43423618  "0/0"          "0/0"          NA            
## HiC_scaffold_83_46920654  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_83_46934197  "1|1"          "0/1"          "1/1"         
## HiC_scaffold_84_356301    "1|1"          "1|1"          "0/0"         
## HiC_scaffold_84_5761817   NA             "0/0"          "0/1"         
## HiC_scaffold_84_5769022   "0/0"          NA             "0/0"         
## HiC_scaffold_84_6288130   "0|1"          "0/0"          "0/0"         
## HiC_scaffold_84_6288141   "1/1"          "1|1"          "1/1"         
## HiC_scaffold_84_6288147   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_84_7069238   "0|1"          "0/0"          NA            
## HiC_scaffold_84_9131309   "1/1"          "1/1"          "0/1"         
## HiC_scaffold_84_10148442  NA             "0/1"          "0/1"         
## HiC_scaffold_84_14659391  "0|1"          "0|1"          "1/1"         
## HiC_scaffold_84_16302752  "2|2"          NA             "1/1"         
## HiC_scaffold_84_18463244  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_84_22909575  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_84_29275266  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_84_31184610  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_84_33093169  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_84_37675180  "0/1"          "0/0"          NA            
## HiC_scaffold_84_39501814  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_84_50169438  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_84_50169445  "1|1"          NA             "0/0"         
## HiC_scaffold_84_51231025  "0|1"          "0|1"          "0/0"         
## HiC_scaffold_85_9792207   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_85_11784233  "1|1"          "1/1"          "0/1"         
## HiC_scaffold_85_11911022  "0/1"          "0/1"          "1|1"         
## HiC_scaffold_85_11911142  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_85_11913828  NA             "0/0"          "0/0"         
## HiC_scaffold_85_11913831  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_85_12353081  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_85_12414551  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_85_13043967  "1|1"          "0|1"          NA            
## HiC_scaffold_85_13221888  "0/1"          NA             "1/1"         
## HiC_scaffold_85_27008863  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_85_28992264  "0|1"          "0/1"          "0/0"         
## HiC_scaffold_85_28992268  "0/1"          "0|1"          "0/1"         
## HiC_scaffold_85_64310850  "1|1"          "0/1"          "1|1"         
## HiC_scaffold_85_65135112  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_85_65563529  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_86_1949664   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_86_5340423   "0/1"          "0/1"          "1/1"         
## HiC_scaffold_86_5483991   "0/0"          "1|1"          "0/1"         
## HiC_scaffold_86_8928469   "0|1"          "1/1"          "0/0"         
## HiC_scaffold_86_23727924  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_86_24825818  "1|1"          "0/1"          NA            
## HiC_scaffold_86_25333718  "0/1"          NA             "0/0"         
## HiC_scaffold_86_29668168  "2/2"          "0/0"          NA            
## HiC_scaffold_86_30914243  "1|1"          "0/0"          NA            
## HiC_scaffold_86_32040320  "1|1"          "0|1"          "1|1"         
## HiC_scaffold_86_32040329  "1|1"          "0|1"          "1|1"         
## HiC_scaffold_86_32125061  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_86_32144758  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_86_32153692  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_86_32534129  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_86_32605768  "1|1"          "0/0"          NA            
## HiC_scaffold_86_36355399  "0/0"          NA             NA            
## HiC_scaffold_86_36357265  "1/1"          "1|1"          "1/1"         
## HiC_scaffold_87_1253643   "0/0"          "1/1"          "0/1"         
## HiC_scaffold_87_2137958   "0/0"          "0/1"          NA            
## HiC_scaffold_87_3980100   "1/1"          "0/1"          "1/1"         
## HiC_scaffold_87_4395923   "0/1"          "0/0"          "0/1"         
## HiC_scaffold_87_5489328   "0/1"          "1|1"          NA            
## HiC_scaffold_87_6300441   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_87_16306904  "0/1"          "1/1"          "0/1"         
## HiC_scaffold_87_44780945  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_88_5584327   "1/1"          "0|1"          "1/1"         
## HiC_scaffold_88_7104630   "0/0"          "0|1"          "1|1"         
## HiC_scaffold_88_7104631   "0/0"          "0|1"          "1|1"         
## HiC_scaffold_88_7104638   "1|1"          "1/1"          "1|1"         
## HiC_scaffold_88_7104639   "0/0"          "0/1"          "1|1"         
## HiC_scaffold_88_7104640   "1|1"          "0|1"          "1|1"         
## HiC_scaffold_88_7479340   "0|1"          "0/0"          "0/1"         
## HiC_scaffold_88_8773607   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_88_9883678   "1|1"          "1|1"          NA            
## HiC_scaffold_88_10878718  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_88_19365116  "0/1"          "1/1"          "0/1"         
## HiC_scaffold_88_20477349  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_88_20557885  "1/1"          "0|1"          "1/1"         
## HiC_scaffold_89_675045    "0/0"          "1/1"          "0/1"         
## HiC_scaffold_89_2815845   "0/0"          "2|2"          "0/0"         
## HiC_scaffold_89_2843940   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_89_3018830   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_89_13745506  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_89_30006907  "0/0"          NA             NA            
## HiC_scaffold_89_36509388  "1|1"          "1|1"          NA            
## HiC_scaffold_89_38703735  NA             "0/0"          "1/1"         
## HiC_scaffold_89_38764895  NA             NA             "1/1"         
## HiC_scaffold_89_42052609  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_89_42054991  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_89_44306958  "0/1"          "0/1"          "1/1"         
## HiC_scaffold_89_44338206  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_89_45298973  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_9_3529921    "1|1"          "0/0"          "0/0"         
## HiC_scaffold_9_5660454    "0/0"          "1|1"          "1|1"         
## HiC_scaffold_9_5660461    "1/1"          "1|1"          "1|1"         
## HiC_scaffold_9_5854070    "1/1"          "1/1"          "1/1"         
## HiC_scaffold_9_6142415    "0|1"          "0/0"          "1|1"         
## HiC_scaffold_9_6142436    "0|1"          "0/0"          "1|1"         
## HiC_scaffold_9_6143781    "0/1"          "0/0"          "1/1"         
## HiC_scaffold_9_6654825    "1/1"          "0/0"          "0/1"         
## HiC_scaffold_9_7094545    "1|1"          "1|1"          "1|1"         
## HiC_scaffold_9_7100208    "0/0"          "1|1"          "1|1"         
## HiC_scaffold_9_7109988    "1/1"          "0/1"          "0/0"         
## HiC_scaffold_9_7111922    "1|1"          "0/1"          NA            
## HiC_scaffold_9_8235781    NA             "0/1"          "0/0"         
## HiC_scaffold_9_8279558    "0/1"          "1/1"          "1/1"         
## HiC_scaffold_9_15679481   "1|1"          "0/0"          "0|1"         
## HiC_scaffold_9_18082611   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_9_18090830   "0/0"          NA             "1/1"         
## HiC_scaffold_9_30240531   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_90_10418696  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_90_11470224  "0/0"          "0/0"          NA            
## HiC_scaffold_90_13593319  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_90_16260161  "0/0"          "0/1"          NA            
## HiC_scaffold_90_22325499  "0/1"          "1/1"          NA            
## HiC_scaffold_90_23574204  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_90_23609908  "0/1"          "0/0"          "1|1"         
## HiC_scaffold_90_23623078  "0/1"          "1|1"          "0/0"         
## HiC_scaffold_90_23626883  NA             "0/0"          "0/0"         
## HiC_scaffold_90_23812663  NA             "1/1"          "1/1"         
## HiC_scaffold_90_25939283  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_90_25985714  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_90_30751272  "0/0"          NA             NA            
## HiC_scaffold_90_31232025  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_90_31245699  "1/1"          "0/0"          NA            
## HiC_scaffold_90_31527975  NA             "1/1"          "0/0"         
## HiC_scaffold_90_31546172  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_90_38511996  NA             "1|1"          "0/0"         
## HiC_scaffold_90_38511999  NA             "1|1"          "0/0"         
## HiC_scaffold_90_38517279  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_90_40624104  NA             "0/0"          NA            
## HiC_scaffold_91_5644765   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_91_5867214   "0/0"          "0|1"          NA            
## HiC_scaffold_91_5867226   "0/0"          "0|1"          NA            
## HiC_scaffold_91_7704263   "1|1"          "0/0"          "1|1"         
## HiC_scaffold_91_7871360   "0/0"          NA             "0/1"         
## HiC_scaffold_91_8538014   "1/1"          NA             NA            
## HiC_scaffold_91_13230485  "0/0"          "0/0"          NA            
## HiC_scaffold_91_28696118  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_91_28696625  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_91_42177482  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_91_46813640  NA             "1|2"          "0/0"         
## HiC_scaffold_92_23783035  "0/1"          "0/0"          "2|2"         
## HiC_scaffold_92_23783036  "0/1"          "0/0"          "2|2"         
## HiC_scaffold_92_24712793  "0/1"          "1/1"          "0/1"         
## HiC_scaffold_92_28698258  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_92_40691582  "0/0"          NA             "0/0"         
## HiC_scaffold_92_43967712  "1/1"          "1/1"          NA            
## HiC_scaffold_92_47147572  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_92_49042714  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_92_49042715  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_92_53634002  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_92_58211868  "0/1"          "0/1"          NA            
## HiC_scaffold_92_60114155  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_92_63603483  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_92_64797225  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_92_68367476  "0|2"          "0/0"          "0/1"         
## HiC_scaffold_93_1912167   "1|1"          NA             NA            
## HiC_scaffold_93_2485978   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_93_3227638   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_93_3227641   "0/0"          NA             "0|1"         
## HiC_scaffold_93_13971208  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_93_13987080  "1/1"          "0/1"          NA            
## HiC_scaffold_93_21125468  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_93_21845293  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_93_21845310  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_93_21846342  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_93_21846356  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_93_22589723  "0/0"          NA             "1/1"         
## HiC_scaffold_93_22619278  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_93_22631258  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_93_22631266  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_94_3110102   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_94_3205919   "1/1"          "0/0"          NA            
## HiC_scaffold_94_9023846   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_94_11572820  NA             "1/1"          "1/1"         
## HiC_scaffold_94_12368532  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_94_42179418  "1/1"          NA             "1/1"         
## HiC_scaffold_94_42179519  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_94_51646206  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_94_52781289  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_94_53790035  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_94_53792738  "0/1"          NA             "0/0"         
## HiC_scaffold_94_56768905  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_946_81276    "0/1"          "1/1"          "1/1"         
## HiC_scaffold_95_3189690   "0/1"          "0/0"          NA            
## HiC_scaffold_95_4397298   "1|1"          "1/1"          "1|1"         
## HiC_scaffold_95_9469157   "1|1"          "0|1"          "0/0"         
## HiC_scaffold_95_10641411  "1/1"          NA             NA            
## HiC_scaffold_95_10949821  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_95_12993394  "0|1"          "0|1"          "0/0"         
## HiC_scaffold_95_15515793  NA             "0|1"          "0/0"         
## HiC_scaffold_95_15608785  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_95_15609137  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_95_16295316  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_95_22656165  "0|1"          "0|1"          "1|1"         
## HiC_scaffold_95_25885727  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_96_10460019  "0/0"          NA             "1/1"         
## HiC_scaffold_96_27155785  NA             "0/1"          "0/1"         
## HiC_scaffold_96_37939434  "1/1"          "0|1"          "0/0"         
## HiC_scaffold_96_51115048  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_96_51116511  "0/1"          "1/1"          "0/1"         
## HiC_scaffold_96_51915040  "1|1"          NA             "1|1"         
## HiC_scaffold_96_52681287  "0/1"          "0/1"          "0/0"         
## HiC_scaffold_96_53276519  "0/1"          "0/0"          NA            
## HiC_scaffold_97_1736926   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_97_1736994   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_97_3863543   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_97_4200445   "0/0"          "0/1"          "1/1"         
## HiC_scaffold_97_4799162   "0/1"          "0/0"          "0/1"         
## HiC_scaffold_97_5027892   "0/1"          "0/1"          "1/1"         
## HiC_scaffold_97_8007933   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_97_17997210  "0/0"          "0|1"          "0/0"         
## HiC_scaffold_97_18604647  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_97_20239636  "0/0"          "0/1"          "0|1"         
## HiC_scaffold_98_15154096  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_98_22342667  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_98_22634293  NA             NA             "1|1"         
## HiC_scaffold_98_22634294  NA             NA             "1|1"         
## HiC_scaffold_98_22721138  NA             "0/1"          "1/1"         
## HiC_scaffold_98_22869378  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_98_24108405  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_98_27359592  "0|1"          NA             "0|1"         
## HiC_scaffold_98_28549834  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_98_28867520  "1|1"          "1|1"          "1/1"         
## HiC_scaffold_98_28867524  "1|1"          "1|1"          "1/2"         
## HiC_scaffold_98_29431717  "0/1"          "1|1"          "0/1"         
## HiC_scaffold_98_29675109  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_99_1163244   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_99_1451611   "0/0"          "0/1"          "0/1"         
## HiC_scaffold_99_2021961   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_99_5134392   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_99_5239109   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_99_6917738   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_99_11221970  "0/0"          "0/0"          NA            
## HiC_scaffold_99_25982503  "1/1"          "1/1"          "1/1"         
##                           Tank_18_Crab_1 Tank_18_Crab_2 Tank_18_Crab_3
## HiC_scaffold_1_2523394    "0/0"          NA             "0/0"         
## HiC_scaffold_1_2542157    "1/1"          NA             "0/0"         
## HiC_scaffold_1_2647806    "1/1"          "1/1"          "1/1"         
## HiC_scaffold_1_2970226    "0/0"          "0/0"          "0/1"         
## HiC_scaffold_1_3329447    "1|2"          "0/0"          "0/0"         
## HiC_scaffold_1_3795100    "1|1"          "0/0"          "1|1"         
## HiC_scaffold_10_2221345   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_10_2299490   "1/1"          "0/0"          "0/1"         
## HiC_scaffold_10_2565301   "0/0"          "1/1"          "1/1"         
## HiC_scaffold_10_3864355   NA             "0/1"          NA            
## HiC_scaffold_10_4319900   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_10_4319907   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_10_5404579   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_10_5843373   "0/0"          "0/1"          "1/1"         
## HiC_scaffold_100_854947   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_100_1070817  "1/1"          NA             "1/1"         
## HiC_scaffold_100_2002094  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_100_2002097  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_100_2010331  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_100_5186498  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_100_5828477  "1/1"          NA             "0/1"         
## HiC_scaffold_100_6470419  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_100_6739225  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_100_6739258  "1|1"          "1|1"          "0|1"         
## HiC_scaffold_100_6739264  "1|1"          "1|1"          "0|1"         
## HiC_scaffold_100_6907177  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_100_8384481  "0/0"          "1/1"          "1|1"         
## HiC_scaffold_100_8384495  "0/0"          "1/1"          "1|1"         
## HiC_scaffold_100_9451470  "0/1"          NA             "0/0"         
## HiC_scaffold_100_10464574 "1/1"          "0/0"          "1/1"         
## HiC_scaffold_100_11934792 "0|1"          "0/0"          "0/0"         
## HiC_scaffold_100_11980177 "1/1"          "0|1"          "1|1"         
## HiC_scaffold_100_18465760 "0|1"          "0|1"          "1|1"         
## HiC_scaffold_100_18465762 "0|1"          "0|1"          "1|1"         
## HiC_scaffold_100_18466205 NA             "0/0"          "2/2"         
## HiC_scaffold_100_31738115 "1/1"          NA             "0/1"         
## HiC_scaffold_100_44227362 "1/1"          "1/1"          "1/1"         
## HiC_scaffold_101_12808961 "0/0"          "0/0"          "0|1"         
## HiC_scaffold_101_13897149 NA             "0/0"          "1/1"         
## HiC_scaffold_101_18337279 "0/0"          "0/0"          "0/0"         
## HiC_scaffold_101_20800167 "1/1"          NA             "1/1"         
## HiC_scaffold_102_2260041  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_102_8734519  NA             NA             "0/1"         
## HiC_scaffold_102_10233999 "1|1"          "0/0"          "1|1"         
## HiC_scaffold_102_11446042 "1/1"          "0/0"          "1/1"         
## HiC_scaffold_102_15918694 "1/1"          NA             "0/1"         
## HiC_scaffold_102_15935667 NA             NA             "0/0"         
## HiC_scaffold_102_17442643 "1/1"          "1/1"          NA            
## HiC_scaffold_102_17608969 "0/0"          "1/1"          NA            
## HiC_scaffold_102_20180185 "1/1"          NA             "1/1"         
## HiC_scaffold_102_24788723 "0/1"          "0/0"          "1/1"         
## HiC_scaffold_102_25423729 "1|1"          "0/0"          "1|1"         
## HiC_scaffold_102_39755142 "0/1"          "1/1"          NA            
## HiC_scaffold_102_52046978 "1/1"          "0/0"          "1/1"         
## HiC_scaffold_1027_34152   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_103_601715   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_103_2891384  "0/0"          NA             "1/1"         
## HiC_scaffold_103_8191270  "0/0"          "0/0"          "0|2"         
## HiC_scaffold_103_9521272  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_103_14768909 NA             "1|1"          "1|1"         
## HiC_scaffold_103_19312119 "1/1"          "1|1"          "0/0"         
## HiC_scaffold_103_21284866 "0/0"          "0/0"          "1/1"         
## HiC_scaffold_103_31428453 "0/0"          "0|1"          "0/0"         
## HiC_scaffold_103_42567396 "0/1"          "0/0"          "0/1"         
## HiC_scaffold_103_45921571 "0/0"          "0/0"          "1|1"         
## HiC_scaffold_103_45921573 "0/0"          "0/0"          "1|1"         
## HiC_scaffold_103_49592022 "0/0"          NA             "0/1"         
## HiC_scaffold_103_49620132 NA             NA             "0/1"         
## HiC_scaffold_103_50440915 "1|1"          "0/0"          "0/0"         
## HiC_scaffold_103_51944137 "1/1"          NA             "0/0"         
## HiC_scaffold_103_54308582 "1|1"          "0/0"          "0/0"         
## HiC_scaffold_103_54424067 "0/1"          NA             "1|1"         
## HiC_scaffold_103_56932900 NA             "1/1"          "0/1"         
## HiC_scaffold_103_57470264 "0/0"          "1|1"          "1/1"         
## HiC_scaffold_104_7771140  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_104_9103028  NA             NA             "0/0"         
## HiC_scaffold_104_10633168 "0/0"          "0/0"          "0/0"         
## HiC_scaffold_104_18917031 "1/1"          "0|1"          "1|1"         
## HiC_scaffold_104_20851902 "1/1"          NA             "1/1"         
## HiC_scaffold_104_24451803 "1/1"          "0/0"          "0/0"         
## HiC_scaffold_104_28597688 "0|1"          NA             "0/1"         
## HiC_scaffold_104_40927999 "0/0"          "1/1"          "0/0"         
## HiC_scaffold_104_46490074 NA             "0/0"          "1/1"         
## HiC_scaffold_104_49759053 "1/1"          "0/0"          "0/0"         
## HiC_scaffold_104_57267896 "1/1"          NA             NA            
## HiC_scaffold_104_62570010 "0/0"          "1/1"          "0/1"         
## HiC_scaffold_11_32804173  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_11_34516508  NA             "1/1"          "1|1"         
## HiC_scaffold_11_35332996  "1/1"          NA             "0/1"         
## HiC_scaffold_11_35904027  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_11_41539793  "0/0"          "1|1"          "0/1"         
## HiC_scaffold_11_41604080  "1|1"          NA             "1/1"         
## HiC_scaffold_11_42855323  "1/1"          "0/0"          NA            
## HiC_scaffold_11_45339409  "0/0"          NA             "1/1"         
## HiC_scaffold_11_45339410  "1|1"          NA             "0/0"         
## HiC_scaffold_11_47544035  NA             NA             "1/1"         
## HiC_scaffold_12_7515164   "0/0"          NA             "0/0"         
## HiC_scaffold_12_12640100  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_12_12826705  "1|1"          NA             "0/0"         
## HiC_scaffold_12_14899285  "0/0"          NA             "0/1"         
## HiC_scaffold_12_17465672  "1/1"          NA             "1/1"         
## HiC_scaffold_12_22770710  "1|1"          "0/0"          NA            
## HiC_scaffold_12_32318964  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_12_35136373  "1|1"          NA             "0/0"         
## HiC_scaffold_12_40687860  "1|1"          "1|1"          NA            
## HiC_scaffold_13_2938168   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_13_20350974  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_13_27759554  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_13_28146828  "0/0"          "0/0"          "0|2"         
## HiC_scaffold_13_28146830  "0/0"          "0/0"          "0|2"         
## HiC_scaffold_13_28925343  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_13_31913129  "0/1"          NA             NA            
## HiC_scaffold_13_32078924  "0/0"          NA             "0/0"         
## HiC_scaffold_13_33864805  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_13_34892542  NA             NA             "0/1"         
## HiC_scaffold_13_34893103  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_13_35762551  "0|1"          "0|1"          "0|1"         
## HiC_scaffold_13_35881745  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_13_35881749  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_14_3843214   "0/0"          NA             "1/1"         
## HiC_scaffold_14_25884262  "0/2"          "0/0"          "0/2"         
## HiC_scaffold_14_27050415  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_14_27118495  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_14_27277222  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_14_29215814  "1|1"          NA             "1|1"         
## HiC_scaffold_15_2460398   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_15_2462980   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_15_2467289   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_15_5669141   "1/1"          "0/1"          "1/1"         
## HiC_scaffold_15_13700694  NA             "0/0"          "0/0"         
## HiC_scaffold_15_17825275  "0/0"          NA             "1|1"         
## HiC_scaffold_15_19938475  "0/1"          "1/1"          "0/1"         
## HiC_scaffold_15_23865956  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_15_28837774  "1|1"          NA             NA            
## HiC_scaffold_15_28837810  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_15_28837823  NA             "1|1"          "0/1"         
## HiC_scaffold_15_28837835  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_15_28837841  NA             "0/0"          "0/0"         
## HiC_scaffold_15_28837854  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_15_34827832  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_15_34893807  "0/1"          "1/1"          "0/1"         
## HiC_scaffold_15_35327348  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_15_42161112  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_15_42164926  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_15_42164946  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_15_46289572  "0/0"          "1/1"          "1|1"         
## HiC_scaffold_15_50591576  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_15_50759128  "0/1"          "1/1"          "0/1"         
## HiC_scaffold_15_51188336  "0/1"          "0/0"          "1|1"         
## HiC_scaffold_15_54726640  "1/1"          NA             "1/1"         
## HiC_scaffold_15_54788235  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_15_56162375  NA             NA             "0/0"         
## HiC_scaffold_15_61091106  "0/0"          NA             "1/1"         
## HiC_scaffold_15_61464359  NA             NA             "1/1"         
## HiC_scaffold_15_61510386  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_15_62309788  "1|1"          NA             "0/0"         
## HiC_scaffold_15_62309793  "1|1"          NA             "0/0"         
## HiC_scaffold_15_62771254  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_15_63493927  NA             "1/1"          "1/1"         
## HiC_scaffold_15_64997502  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_15_65007865  "1|1"          "1|1"          NA            
## HiC_scaffold_15_65007879  "0/0"          "1|1"          NA            
## HiC_scaffold_15_66038529  "0/0"          NA             "1/1"         
## HiC_scaffold_15_69811281  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_16_14205925  NA             NA             "0/1"         
## HiC_scaffold_16_30404047  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_16_57413288  "0|1"          "1|1"          "1|1"         
## HiC_scaffold_16_63687578  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_16_74138787  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_16_74140106  "0/0"          NA             "0/0"         
## HiC_scaffold_16_76276015  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_17_11390873  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_17_12551128  "0/1"          "1/1"          NA            
## HiC_scaffold_17_16615612  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_17_18838093  "0/0"          "0/1"          "1|1"         
## HiC_scaffold_17_22801072  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_17_23788599  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_17_29383895  NA             NA             NA            
## HiC_scaffold_17_29618771  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_17_29976139  "1/1"          NA             "1/1"         
## HiC_scaffold_17_31107213  "1/1"          NA             "0/1"         
## HiC_scaffold_17_32493792  "1/1"          NA             "0/0"         
## HiC_scaffold_17_33732050  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_17_33801314  "0/0"          NA             "0/1"         
## HiC_scaffold_17_34081889  "1/1"          NA             "1/1"         
## HiC_scaffold_18_227565    "1/1"          "0/0"          NA            
## HiC_scaffold_18_1213486   "0/1"          "1/1"          "1/1"         
## HiC_scaffold_18_1701312   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_18_3506437   "1/1"          NA             "1/1"         
## HiC_scaffold_18_6304978   NA             "0/0"          "1/1"         
## HiC_scaffold_18_6351493   "1/1"          "0/1"          "1/1"         
## HiC_scaffold_18_6358009   "1/1"          NA             "0/0"         
## HiC_scaffold_18_10770701  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_18_13342858  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_18_20045832  NA             NA             "0/0"         
## HiC_scaffold_18_22682683  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_18_26337790  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_18_48929148  "1|1"          "0/0"          "0/1"         
## HiC_scaffold_18_51490626  "0/0"          NA             "0/0"         
## HiC_scaffold_18_53723137  NA             NA             "0|1"         
## HiC_scaffold_18_54496637  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_18_55294388  "0/1"          "0/0"          NA            
## HiC_scaffold_19_279726    "1/1"          "0/0"          "0/0"         
## HiC_scaffold_19_6426572   NA             NA             "1/1"         
## HiC_scaffold_19_6575887   "1|1"          NA             "1|1"         
## HiC_scaffold_19_7755254   "0/0"          NA             "0/0"         
## HiC_scaffold_19_9301421   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_19_9357388   NA             "1|1"          "0|1"         
## HiC_scaffold_19_9778841   "1/1"          NA             "1/1"         
## HiC_scaffold_19_10928976  NA             "1|1"          "1/1"         
## HiC_scaffold_19_10928980  NA             "1|1"          "0/1"         
## HiC_scaffold_19_10928982  NA             "0/0"          "0/0"         
## HiC_scaffold_19_11106347  "0/1"          NA             "0/0"         
## HiC_scaffold_19_11590139  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_19_11665300  NA             NA             "1/1"         
## HiC_scaffold_19_14793640  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_19_22112743  NA             "1|1"          "1|1"         
## HiC_scaffold_19_25473671  NA             "1/1"          "1/1"         
## HiC_scaffold_19_25473692  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_19_28110829  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_19_28465002  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_19_28465167  "1/1"          NA             "0/0"         
## HiC_scaffold_19_30106869  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_19_52538858  "1/1"          NA             "1/1"         
## HiC_scaffold_19_52596196  "0/0"          NA             "0/0"         
## HiC_scaffold_19_53482993  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_19_54312637  "1/1"          NA             "1|1"         
## HiC_scaffold_19_59345841  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_2_3296144    "0/0"          NA             "1|1"         
## HiC_scaffold_2_3418589    "0/0"          "0/0"          "1/1"         
## HiC_scaffold_2_3864060    "1/1"          "1/1"          "1/1"         
## HiC_scaffold_2_4104755    "0/0"          "0|1"          "0/0"         
## HiC_scaffold_2_4104758    "0/0"          "0|1"          "0/0"         
## HiC_scaffold_2_8316721    "0/0"          "0/0"          "0/0"         
## HiC_scaffold_2_9098999    "1/1"          NA             "0/0"         
## HiC_scaffold_2_10457537   NA             "0/1"          "1/1"         
## HiC_scaffold_2_19048125   "0/1"          "0/0"          "1/1"         
## HiC_scaffold_2_21748201   "1/1"          NA             "1/1"         
## HiC_scaffold_2_33187764   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_2_33187770   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_2_33187959   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_2_41603929   "0/1"          "0/0"          "0/1"         
## HiC_scaffold_2_52233191   "1/1"          "0/1"          "0/0"         
## HiC_scaffold_2_52400748   "1/1"          "0/1"          "1/1"         
## HiC_scaffold_2_52403793   "1|1"          "1|1"          "1/1"         
## HiC_scaffold_2_52799130   NA             "1/1"          "1/1"         
## HiC_scaffold_20_10332897  "0/1"          NA             "0/0"         
## HiC_scaffold_20_17198418  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_20_17915398  NA             NA             "0/0"         
## HiC_scaffold_20_18872955  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_20_19055301  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_20_19150094  "0/0"          "1/1"          NA            
## HiC_scaffold_20_20651022  NA             "0/0"          "1|1"         
## HiC_scaffold_20_22651296  "0/1"          NA             "0/1"         
## HiC_scaffold_21_2009156   "0|1"          "1|1"          NA            
## HiC_scaffold_21_2435648   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_21_7164210   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_21_9786512   "0/1"          NA             NA            
## HiC_scaffold_21_12424922  "1/1"          NA             "1/1"         
## HiC_scaffold_21_17966833  "1/1"          NA             NA            
## HiC_scaffold_21_19025429  NA             "1/1"          "1/1"         
## HiC_scaffold_21_20058318  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_21_20562855  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_21_20661860  "1|1"          NA             "0/1"         
## HiC_scaffold_21_20895395  "0/0"          NA             "0/0"         
## HiC_scaffold_21_21158811  "2|2"          "0/0"          NA            
## HiC_scaffold_21_22250857  "0/1"          "1/1"          NA            
## HiC_scaffold_21_22250866  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_21_22257737  "0|1"          "1/1"          "1/1"         
## HiC_scaffold_21_22644667  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_21_22644673  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_21_22666888  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_21_23905416  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_21_23981651  NA             "0/0"          "0/0"         
## HiC_scaffold_21_24287068  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_21_30798434  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_21_35006232  "1/1"          NA             "1/1"         
## HiC_scaffold_21_35779294  "0/1"          "1|1"          "0/0"         
## HiC_scaffold_22_124910    "0/0"          "0/0"          "0/0"         
## HiC_scaffold_22_751023    "1/1"          NA             "1|1"         
## HiC_scaffold_22_1042644   "0|1"          "0/0"          "0/0"         
## HiC_scaffold_22_1044708   "0/0"          NA             NA            
## HiC_scaffold_22_2174911   "0/0"          "0/0"          NA            
## HiC_scaffold_22_3431122   "0/0"          NA             "0/0"         
## HiC_scaffold_22_3446787   "0|1"          "0/0"          "0|1"         
## HiC_scaffold_22_3451756   "1/1"          NA             "1/1"         
## HiC_scaffold_22_3720435   "0/0"          "1/1"          "0/1"         
## HiC_scaffold_22_4065466   NA             "0/0"          NA            
## HiC_scaffold_22_4739889   "0/0"          "0/0"          NA            
## HiC_scaffold_22_4918263   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_22_5750008   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_22_5769942   "1|1"          NA             "0|1"         
## HiC_scaffold_22_28264522  "1|1"          "1|1"          "0/1"         
## HiC_scaffold_22_28265115  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_22_29205851  NA             "1/2"          "1/1"         
## HiC_scaffold_22_29822340  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_22_30797357  "0/1"          "0|1"          "0/0"         
## HiC_scaffold_22_32042610  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_23_11215327  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_23_27081333  NA             "0/0"          "0/0"         
## HiC_scaffold_23_28672255  "0/0"          NA             "0/0"         
## HiC_scaffold_23_29218828  "1/1"          "0/1"          "0/1"         
## HiC_scaffold_23_32528768  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_23_32669383  "0/0"          NA             "0/1"         
## HiC_scaffold_23_33199663  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_23_33245843  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_23_40824545  "0/0"          NA             "1|1"         
## HiC_scaffold_23_41504669  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_24_16622654  "1/1"          NA             "1/1"         
## HiC_scaffold_24_16622681  NA             "1/1"          "1/1"         
## HiC_scaffold_24_19851560  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_24_20590563  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_24_27745754  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_24_28763699  "1|1"          "0/1"          "1|1"         
## HiC_scaffold_24_28763703  "1|1"          "1/1"          "1|1"         
## HiC_scaffold_25_4135969   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_25_4201677   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_25_5872831   "0/1"          NA             "1/1"         
## HiC_scaffold_25_6879627   "0/0"          NA             "1/1"         
## HiC_scaffold_25_8172813   "1|1"          NA             "1/1"         
## HiC_scaffold_25_9969507   "1|1"          "0|1"          "1|1"         
## HiC_scaffold_25_10691336  "0/1"          NA             "0/0"         
## HiC_scaffold_25_21286462  "0/0"          "1/1"          "1|1"         
## HiC_scaffold_26_4086662   "0/0"          NA             NA            
## HiC_scaffold_26_7539671   NA             "1|1"          "0/0"         
## HiC_scaffold_26_8348511   "1/1"          "0/0"          "0/1"         
## HiC_scaffold_26_9043748   "1|1"          "0/0"          "1|1"         
## HiC_scaffold_26_9045655   "0/0"          NA             "0/0"         
## HiC_scaffold_26_11253181  "0/0"          "0|1"          NA            
## HiC_scaffold_26_17828344  "1/1"          "0/0"          NA            
## HiC_scaffold_26_17932520  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_26_17941459  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_26_17960877  NA             "1/1"          "1/1"         
## HiC_scaffold_26_18284041  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_26_18288701  "1|1"          NA             "1|1"         
## HiC_scaffold_26_18294422  "0/1"          "1/1"          "0|0"         
## HiC_scaffold_26_21307365  "1|1"          "1/1"          "1/1"         
## HiC_scaffold_26_22159924  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_26_22161535  "1/1"          NA             "0/0"         
## HiC_scaffold_26_24794176  "0|1"          "1/1"          "1/1"         
## HiC_scaffold_26_28538113  "0/0"          "0/1"          "1|1"         
## HiC_scaffold_26_29031357  "1/1"          NA             "1/1"         
## HiC_scaffold_26_29163462  NA             "0/0"          "0/0"         
## HiC_scaffold_26_42631018  "0/0"          "1|1"          "1/1"         
## HiC_scaffold_26_42634814  "0/0"          "1/1"          NA            
## HiC_scaffold_26_43483190  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_26_49955889  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_26_58342510  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_27_1496120   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_27_1947057   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_27_2359058   "0|1"          "1|1"          "0/0"         
## HiC_scaffold_27_2699645   "0/0"          "1/1"          "0/1"         
## HiC_scaffold_27_4425475   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_27_7539469   "1|1"          NA             NA            
## HiC_scaffold_27_7777122   "0/0"          NA             "0/1"         
## HiC_scaffold_27_16657070  "1/1"          NA             "0/0"         
## HiC_scaffold_27_24539255  NA             NA             NA            
## HiC_scaffold_27_34642359  "0/0"          "1|1"          NA            
## HiC_scaffold_27_34647277  "0|1"          "0/0"          "1|1"         
## HiC_scaffold_27_35380535  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_27_35383230  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_28_21261390  "0/0"          NA             "0|1"         
## HiC_scaffold_28_24490442  "0/0"          NA             "1/1"         
## HiC_scaffold_28_25601927  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_28_31793968  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_28_32126687  "2/2"          "0/0"          "0/0"         
## HiC_scaffold_28_34779518  NA             "1/1"          "1/1"         
## HiC_scaffold_28_36042491  "0|1"          "1/1"          "1/1"         
## HiC_scaffold_28_36692361  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_28_38672993  "0/0"          NA             "0|1"         
## HiC_scaffold_28_39640526  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_28_40169242  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_28_41059640  NA             "1|1"          "1|1"         
## HiC_scaffold_28_42514830  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_28_42601570  "0/0"          NA             "0/0"         
## HiC_scaffold_28_42601585  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_28_43018803  "0/0"          NA             "1/1"         
## HiC_scaffold_28_43036165  "0/0"          NA             "0/0"         
## HiC_scaffold_29_344317    "0/0"          "1/1"          "0/0"         
## HiC_scaffold_29_3811176   "0/1"          NA             "0/1"         
## HiC_scaffold_29_6073993   "1/1"          NA             "0/0"         
## HiC_scaffold_29_6415222   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_29_8224424   NA             NA             "0/1"         
## HiC_scaffold_29_11153624  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_29_11153712  "1/1"          NA             "0/0"         
## HiC_scaffold_29_11167966  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_29_11491468  "0/1"          NA             "1/1"         
## HiC_scaffold_29_12103558  "1|1"          NA             "1|1"         
## HiC_scaffold_29_14279322  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_29_14913907  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_29_16378276  "1/1"          NA             NA            
## HiC_scaffold_29_20635937  NA             "0/0"          NA            
## HiC_scaffold_29_20636787  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_29_22560215  NA             "0/1"          "0/1"         
## HiC_scaffold_29_22561144  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_29_24017849  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_29_31603590  NA             "0/1"          "0/0"         
## HiC_scaffold_3_21670751   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_3_24747014   "0/1"          "0/1"          "0/1"         
## HiC_scaffold_3_27861792   NA             "0/0"          "0/1"         
## HiC_scaffold_3_28057869   NA             "1/1"          "0/0"         
## HiC_scaffold_3_28441436   "0/1"          "0/1"          "0/1"         
## HiC_scaffold_3_28694380   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_3_31361023   "1|1"          "0/0"          "0|1"         
## HiC_scaffold_3_31960572   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_3_32157169   "1/1"          "0/1"          NA            
## HiC_scaffold_3_32159152   "1/1"          "0/0"          "1|1"         
## HiC_scaffold_3_34124237   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_30_14199802  NA             "0/0"          "0/0"         
## HiC_scaffold_30_16052331  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_30_19914075  NA             NA             "1/1"         
## HiC_scaffold_30_20688783  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_30_21446076  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_30_21598563  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_30_22155728  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_31_687411    "0/0"          "0/0"          "1/1"         
## HiC_scaffold_31_3224722   "0/1"          NA             "0/1"         
## HiC_scaffold_31_3574854   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_31_5899551   "1/1"          "0/0"          NA            
## HiC_scaffold_31_5911491   "0/1"          NA             "0|1"         
## HiC_scaffold_31_6297680   "0/1"          "1/1"          "0/0"         
## HiC_scaffold_31_12394016  "1|1"          NA             NA            
## HiC_scaffold_31_12394040  "0/0"          NA             "0/0"         
## HiC_scaffold_31_18612650  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_32_4446859   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_32_5274796   "0/0"          NA             "0/0"         
## HiC_scaffold_32_5275108   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_32_5282358   "1/1"          "0/0"          "0/1"         
## HiC_scaffold_32_5450203   "1|1"          NA             "1|1"         
## HiC_scaffold_32_44200178  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_33_638523    "0/0"          "0/0"          "1|1"         
## HiC_scaffold_33_44489563  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_33_44489988  "0/0"          NA             "0/0"         
## HiC_scaffold_33_47080180  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_33_47495907  "1|1"          "0/0"          "1/1"         
## HiC_scaffold_33_51865876  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_34_1096982   "0/1"          "1/1"          "0/0"         
## HiC_scaffold_34_6091943   "1|1"          NA             "0|1"         
## HiC_scaffold_34_6100160   "0/0"          NA             "1|1"         
## HiC_scaffold_34_24368584  "0/1"          NA             "0/0"         
## HiC_scaffold_35_3233120   "1/1"          NA             NA            
## HiC_scaffold_35_3253574   "0/0"          "1/1"          NA            
## HiC_scaffold_35_5512296   "0/0"          "0/1"          "0/0"         
## HiC_scaffold_35_15114788  "1/1"          "0/1"          "0/1"         
## HiC_scaffold_35_21214090  "0/0"          NA             "1/1"         
## HiC_scaffold_35_21462564  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_35_22746783  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_35_22747085  "0/1"          "0/0"          "1|1"         
## HiC_scaffold_35_23059580  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_35_23158882  "1/1"          NA             "1/1"         
## HiC_scaffold_35_23261143  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_35_24403602  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_35_24403620  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_35_24993986  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_35_24993998  NA             "1|1"          "0|1"         
## HiC_scaffold_36_1538038   "1/1"          NA             "0/1"         
## HiC_scaffold_36_2464728   "1/1"          NA             NA            
## HiC_scaffold_36_5489050   "1/1"          "0/0"          NA            
## HiC_scaffold_36_9673981   "0/1"          "0/0"          NA            
## HiC_scaffold_36_9674127   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_36_9674756   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_36_9676329   "1/1"          "1/1"          "0|1"         
## HiC_scaffold_36_12304516  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_36_12515555  "1|1"          NA             "0|1"         
## HiC_scaffold_36_13092647  NA             "0/0"          NA            
## HiC_scaffold_36_13766994  "1/1"          NA             NA            
## HiC_scaffold_36_14567741  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_36_15530578  "1|1"          NA             "1|1"         
## HiC_scaffold_37_679894    "1/1"          "0/0"          "1/1"         
## HiC_scaffold_37_916693    "1|1"          NA             NA            
## HiC_scaffold_37_928146    "0/0"          "1/1"          NA            
## HiC_scaffold_37_1256768   NA             "1|1"          "1|1"         
## HiC_scaffold_37_1270034   "0/0"          "1/1"          "1/1"         
## HiC_scaffold_37_1770997   "0/0"          NA             "2/2"         
## HiC_scaffold_37_1798298   NA             "1/1"          "1/1"         
## HiC_scaffold_37_2010342   "1|1"          "0/1"          "0/0"         
## HiC_scaffold_37_2141526   "0/1"          NA             "0/0"         
## HiC_scaffold_37_3952190   "0/0"          "0/0"          "0|1"         
## HiC_scaffold_37_3952215   "0/0"          "0/0"          "0|1"         
## HiC_scaffold_37_9915037   "0/1"          "0/0"          "1/1"         
## HiC_scaffold_38_5383430   "0/0"          "0/1"          "0/1"         
## HiC_scaffold_38_5668363   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_38_5879849   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_38_5880155   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_38_10612790  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_38_11940240  "0/0"          "0|1"          "0/0"         
## HiC_scaffold_38_12878826  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_38_12959698  "1/1"          NA             "1|1"         
## HiC_scaffold_38_13087368  "1/1"          "1/1"          NA            
## HiC_scaffold_38_13480648  NA             "0|1"          "0/0"         
## HiC_scaffold_38_13965243  "1/1"          NA             "1/1"         
## HiC_scaffold_38_14089955  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_38_14408072  "1|1"          "1|1"          NA            
## HiC_scaffold_38_14931216  NA             "1/1"          "0/0"         
## HiC_scaffold_38_14978356  "1|1"          NA             "1|1"         
## HiC_scaffold_38_14978367  "1|1"          NA             "1|1"         
## HiC_scaffold_38_15292863  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_38_15306135  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_38_16077506  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_38_16138965  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_38_16226040  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_39_1393769   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_39_2014970   "0/0"          "0/1"          "0/1"         
## HiC_scaffold_39_2014982   "0/0"          "0|1"          "0|1"         
## HiC_scaffold_39_2014985   "0/0"          "0|1"          "0|1"         
## HiC_scaffold_39_2426443   NA             "0/0"          "0/0"         
## HiC_scaffold_39_2485330   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_39_3350506   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_39_5897388   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_39_17631133  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_4_12107187   "1/1"          NA             "0/0"         
## HiC_scaffold_4_18241670   "1|1"          "0/0"          "1|1"         
## HiC_scaffold_4_18241723   "1|1"          "1|1"          "1/1"         
## HiC_scaffold_4_22418566   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_4_27899990   "0/1"          "0/1"          "0/1"         
## HiC_scaffold_4_35575118   "0/0"          "0|1"          "0|1"         
## HiC_scaffold_4_38000967   "1/1"          NA             "0/1"         
## HiC_scaffold_4_50654021   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_40_2243415   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_40_3000572   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_40_3014177   "1|1"          "1/1"          "1/1"         
## HiC_scaffold_40_3027900   "1/1"          NA             "0/1"         
## HiC_scaffold_40_3143834   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_40_3843942   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_40_3847620   "1|1"          "0/0"          "1|1"         
## HiC_scaffold_40_3891007   "0/0"          NA             "0/0"         
## HiC_scaffold_40_3920667   "1|1"          NA             "1/1"         
## HiC_scaffold_40_4177963   "0/0"          NA             "0/0"         
## HiC_scaffold_40_4819107   "0/0"          NA             "1/1"         
## HiC_scaffold_40_4819834   "1/1"          "1|1"          "0|1"         
## HiC_scaffold_40_5788271   "0/0"          NA             "0/0"         
## HiC_scaffold_40_5965269   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_40_6204154   "0/1"          NA             "0/1"         
## HiC_scaffold_40_8387917   "0/1"          "1/1"          "1/1"         
## HiC_scaffold_41_3235384   "0/0"          NA             "0/1"         
## HiC_scaffold_41_3583000   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_41_5334504   NA             "1/1"          "1|1"         
## HiC_scaffold_41_5387631   "1|1"          "1|1"          "0/1"         
## HiC_scaffold_41_6423426   NA             "0/0"          "0/0"         
## HiC_scaffold_41_14359947  NA             NA             "0/1"         
## HiC_scaffold_41_24007593  "0/1"          "0/0"          "0|1"         
## HiC_scaffold_41_26225447  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_41_28626484  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_41_28660620  "0|1"          "1|1"          "1|1"         
## HiC_scaffold_41_31007688  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_42_1131084   "1/1"          NA             "1/1"         
## HiC_scaffold_42_1818523   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_42_2165002   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_42_2711332   "0/0"          NA             "1|1"         
## HiC_scaffold_42_6142699   "1/1"          NA             "0/0"         
## HiC_scaffold_42_6744976   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_42_8066919   "1|1"          NA             "0/0"         
## HiC_scaffold_42_8068292   "1|1"          "0/0"          NA            
## HiC_scaffold_42_12487888  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_42_41366687  "1/1"          NA             "1/1"         
## HiC_scaffold_42_47313337  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_42_47313338  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_42_50784971  "1|1"          NA             "0/0"         
## HiC_scaffold_42_50784977  "1|1"          NA             "0/0"         
## HiC_scaffold_42_50784981  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_42_51916989  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_43_3842003   "0/1"          NA             "1/1"         
## HiC_scaffold_43_14140861  "0/0"          NA             "0/1"         
## HiC_scaffold_43_15053605  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_43_17289945  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_43_29967704  "1/1"          NA             NA            
## HiC_scaffold_43_35745831  "0/0"          "0/1"          "1|1"         
## HiC_scaffold_43_37627949  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_43_37628126  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_43_44017118  NA             "0/0"          "0/0"         
## HiC_scaffold_43_55124138  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_43_60107326  "1|1"          NA             "1|1"         
## HiC_scaffold_43_61359386  "1/1"          NA             "1/1"         
## HiC_scaffold_43_61702593  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_43_61702606  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_43_61702721  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_43_61702738  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_43_62511703  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_43_64069457  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_43_64577269  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_44_1920144   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_44_2148035   "0/0"          NA             "0/0"         
## HiC_scaffold_44_2568167   NA             NA             "0/0"         
## HiC_scaffold_45_4180070   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_45_4797754   "0/0"          "0/2"          NA            
## HiC_scaffold_45_5911123   NA             NA             "0/0"         
## HiC_scaffold_45_6958990   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_45_8516216   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_45_10191213  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_45_12005885  "0/1"          "0/1"          NA            
## HiC_scaffold_45_12006766  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_45_24736172  "0/0"          NA             "0/0"         
## HiC_scaffold_45_24739830  NA             "1|1"          "0/0"         
## HiC_scaffold_46_9691567   NA             "0/0"          "0/1"         
## HiC_scaffold_46_17380257  "1/1"          NA             "0/0"         
## HiC_scaffold_46_18387147  "0|1"          NA             "0/0"         
## HiC_scaffold_46_37092355  "0/0"          "0|1"          "0/0"         
## HiC_scaffold_46_39183624  "1/1"          "1/1"          "0|1"         
## HiC_scaffold_46_39390547  "0|1"          "1|1"          "0/1"         
## HiC_scaffold_46_42964941  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_46_42986653  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_46_52074364  "1|1"          NA             "1|1"         
## HiC_scaffold_46_54255667  "1/1"          NA             "1/1"         
## HiC_scaffold_47_3750532   "0/0"          NA             "0/0"         
## HiC_scaffold_47_3751345   "0/0"          "1/1"          NA            
## HiC_scaffold_47_15400639  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_47_24072414  NA             NA             "1/1"         
## HiC_scaffold_47_25273825  "0/0"          NA             "0|1"         
## HiC_scaffold_48_8752752   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_48_10765920  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_48_16077918  "0|1"          NA             "0/0"         
## HiC_scaffold_48_16077940  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_48_16411609  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_48_19972580  NA             "0/0"          "0/1"         
## HiC_scaffold_48_23493079  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_48_23597210  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_48_24478493  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_48_24881148  "0/1"          NA             "0/1"         
## HiC_scaffold_48_25865723  "0/1"          "1/1"          NA            
## HiC_scaffold_48_25984068  "0/0"          "0|1"          "0/0"         
## HiC_scaffold_48_25989079  "0/0"          NA             "1|1"         
## HiC_scaffold_48_30601375  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_48_31662115  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_48_41971562  NA             "1/1"          "1/1"         
## HiC_scaffold_49_3392801   NA             "0/0"          NA            
## HiC_scaffold_49_6101692   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_49_7996315   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_49_9470474   "1/1"          NA             "1/1"         
## HiC_scaffold_49_9886007   "1/1"          NA             "0/0"         
## HiC_scaffold_49_12592113  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_49_12741575  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_49_15135019  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_49_25906219  "0/1"          "0/0"          NA            
## HiC_scaffold_49_26614199  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_49_26655554  "0/1"          "0|1"          "0/0"         
## HiC_scaffold_49_37568341  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_49_37568353  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_49_40002255  "1|1"          "0/0"          NA            
## HiC_scaffold_49_40003229  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_49_42966376  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_5_801252     NA             "1/1"          "0/0"         
## HiC_scaffold_5_1446603    "1|1"          "0/0"          "0/0"         
## HiC_scaffold_5_1446611    "1|1"          "0/0"          "0/0"         
## HiC_scaffold_5_1530759    "1/1"          NA             "1/1"         
## HiC_scaffold_5_1539275    "0/0"          "0/0"          "0/0"         
## HiC_scaffold_5_1789576    "0/0"          "1|1"          "0/0"         
## HiC_scaffold_5_1808197    "0/1"          NA             "1/1"         
## HiC_scaffold_5_1808204    "0/0"          NA             "0/0"         
## HiC_scaffold_5_1943895    "1|1"          "1|1"          "1|1"         
## HiC_scaffold_5_1944469    NA             "1/1"          "0/1"         
## HiC_scaffold_5_2857283    "0/0"          NA             "0/0"         
## HiC_scaffold_5_4061378    "1|1"          "1/1"          "1|1"         
## HiC_scaffold_5_4340647    "0/0"          "0/0"          "0/0"         
## HiC_scaffold_5_4435246    "1/1"          "1/1"          "1/1"         
## HiC_scaffold_5_8868783    "0/0"          "0/0"          "1/1"         
## HiC_scaffold_50_4315969   "1/1"          "0/0"          "0/1"         
## HiC_scaffold_50_11652296  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_50_11657309  "1/1"          NA             "0/0"         
## HiC_scaffold_50_15521027  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_50_21050962  "0/0"          "0/0"          NA            
## HiC_scaffold_50_23686202  "0|1"          NA             "0|1"         
## HiC_scaffold_50_27393462  "0/0"          NA             "1|1"         
## HiC_scaffold_50_42586883  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_50_45087211  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_50_49796550  "1/1"          NA             "1/1"         
## HiC_scaffold_50_54383367  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_50_63318678  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_51_3521000   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_51_4681905   "0/0"          "1/1"          "1/1"         
## HiC_scaffold_51_6305599   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_51_8530818   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_51_11653312  "0/0"          "1/1"          NA            
## HiC_scaffold_51_13138547  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_51_14457091  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_51_15512668  "0/1"          NA             "0/0"         
## HiC_scaffold_51_17816346  NA             NA             "1/1"         
## HiC_scaffold_51_19997934  "0/0"          NA             "1|1"         
## HiC_scaffold_51_19997936  "0/0"          NA             "1|1"         
## HiC_scaffold_51_20870773  NA             "0/0"          "0/1"         
## HiC_scaffold_51_26660104  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_51_40727521  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_51_40892841  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_51_41717519  NA             "1/1"          "1/1"         
## HiC_scaffold_51_42547638  NA             "1/1"          "1/1"         
## HiC_scaffold_52_3335804   NA             NA             "1/1"         
## HiC_scaffold_52_4149130   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_52_6893679   "1|1"          NA             "1|1"         
## HiC_scaffold_52_13155416  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_52_13155437  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_52_13155442  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_52_14885688  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_52_14895078  "1/1"          NA             "0/0"         
## HiC_scaffold_52_15141791  "1/1"          NA             "1/1"         
## HiC_scaffold_52_15743051  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_52_15760201  NA             NA             "0/0"         
## HiC_scaffold_52_15834589  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_52_15841769  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_52_15862421  NA             "0/0"          "0/0"         
## HiC_scaffold_52_15970970  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_52_16275237  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_52_16275240  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_52_16275290  "0/0"          NA             "0/0"         
## HiC_scaffold_52_16524164  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_52_16524572  "1/1"          NA             "1/1"         
## HiC_scaffold_52_16525647  "0/0"          NA             "0/0"         
## HiC_scaffold_52_16637047  "1/1"          NA             "0/0"         
## HiC_scaffold_52_17202127  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_52_17207724  "0/0"          "1/1"          NA            
## HiC_scaffold_52_17508820  "0/1"          NA             "0/0"         
## HiC_scaffold_52_17547593  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_52_17551239  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_52_17560696  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_52_17560699  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_52_17741250  "0/1"          NA             "1/1"         
## HiC_scaffold_52_17742260  "1|1"          NA             "0/0"         
## HiC_scaffold_52_18340578  "0/1"          "0/1"          "0/0"         
## HiC_scaffold_52_18415911  NA             "1/1"          "1/1"         
## HiC_scaffold_52_22189517  NA             "1/1"          "0/0"         
## HiC_scaffold_52_22526592  "0/1"          "0/0"          NA            
## HiC_scaffold_52_26393471  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_52_26799380  NA             "1/1"          "0/1"         
## HiC_scaffold_52_31871931  NA             "0/0"          "0/0"         
## HiC_scaffold_52_31874283  "1|1"          "1|1"          "0|1"         
## HiC_scaffold_52_31874287  "1|1"          "1|1"          "0|1"         
## HiC_scaffold_52_32161053  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_52_33165557  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_52_33897620  NA             NA             "1/1"         
## HiC_scaffold_52_34763156  NA             "0/0"          "0/0"         
## HiC_scaffold_52_34763171  "0/0"          NA             "1/1"         
## HiC_scaffold_52_35174755  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_52_35608453  "1/1"          NA             NA            
## HiC_scaffold_52_35608470  "1|1"          NA             NA            
## HiC_scaffold_52_39464728  "0/0"          NA             "1|1"         
## HiC_scaffold_52_42141354  "0/0"          NA             "1|1"         
## HiC_scaffold_52_44675725  NA             NA             "1/1"         
## HiC_scaffold_52_49935920  "1/1"          NA             "0/1"         
## HiC_scaffold_53_21789524  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_53_25168042  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_53_26398989  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_53_26398992  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_53_26398994  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_53_26549665  "1/1"          NA             "1/1"         
## HiC_scaffold_53_29227676  NA             "0|1"          "1|1"         
## HiC_scaffold_53_31250349  "1/1"          NA             NA            
## HiC_scaffold_54_530581    "1|1"          NA             NA            
## HiC_scaffold_54_794095    "1|1"          "1|1"          "1|1"         
## HiC_scaffold_54_1171109   "0|1"          "0/0"          "0/0"         
## HiC_scaffold_54_1378956   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_54_1380539   "1|1"          "1/1"          "1/1"         
## HiC_scaffold_54_3045015   NA             "1/1"          "1/1"         
## HiC_scaffold_54_3185987   "1/1"          "0/1"          "1/1"         
## HiC_scaffold_54_4401098   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_54_5595903   "0/0"          "0/1"          "0/0"         
## HiC_scaffold_54_5595921   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_54_5595928   "1|1"          "0/0"          "1|1"         
## HiC_scaffold_54_5595949   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_54_6649662   "0/1"          NA             "1/1"         
## HiC_scaffold_54_8036734   "0|1"          NA             NA            
## HiC_scaffold_54_9206614   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_54_35913192  "0/1"          "0/0"          NA            
## HiC_scaffold_54_35913282  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_54_35913283  "0/0"          "0/1"          "1|1"         
## HiC_scaffold_55_1260491   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_55_3254027   "0/0"          "1/1"          "0/1"         
## HiC_scaffold_55_3281985   NA             "0/0"          "1|1"         
## HiC_scaffold_55_5409544   "0/1"          NA             NA            
## HiC_scaffold_55_5411094   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_55_5411115   "1|1"          "1|1"          "0/1"         
## HiC_scaffold_55_18121799  "1/1"          "1/1"          NA            
## HiC_scaffold_55_19605809  "0|1"          "0/0"          "1|1"         
## HiC_scaffold_55_19605817  "0|1"          "1|1"          "1|1"         
## HiC_scaffold_55_19605821  "1/1"          "1|1"          "1|1"         
## HiC_scaffold_55_20195204  NA             "1/1"          "1/1"         
## HiC_scaffold_55_20886967  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_55_23222937  "1/1"          "1/1"          NA            
## HiC_scaffold_55_23626331  NA             "0/0"          "0/0"         
## HiC_scaffold_55_24539590  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_55_24585939  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_55_34174151  NA             "1/1"          "0/0"         
## HiC_scaffold_56_17874332  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_56_18635259  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_56_23654344  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_56_35850533  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_56_35850539  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_56_40813556  "0/0"          NA             "0/0"         
## HiC_scaffold_56_53211633  "1/1"          "0|1"          NA            
## HiC_scaffold_56_60070829  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_56_73286017  "0/1"          NA             "0|1"         
## HiC_scaffold_56_73829442  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_56_73829443  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_56_76060304  "0/0"          NA             "0/0"         
## HiC_scaffold_57_25306408  "0/0"          "0/0"          NA            
## HiC_scaffold_57_29222385  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_57_29592432  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_57_31472698  NA             "1|1"          "1|1"         
## HiC_scaffold_57_32371742  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_57_36495072  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_57_37286264  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_57_38537415  NA             "1|1"          NA            
## HiC_scaffold_57_45438854  "1/1"          "1/2"          "1|1"         
## HiC_scaffold_57_52856874  NA             "0/0"          "0/0"         
## HiC_scaffold_57_53575355  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_57_55856783  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_58_1362614   NA             "0/0"          NA            
## HiC_scaffold_58_1432845   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_58_1541720   NA             NA             "0/0"         
## HiC_scaffold_58_2777120   "0/0"          "0/1"          "0/0"         
## HiC_scaffold_58_2973169   NA             NA             "1/1"         
## HiC_scaffold_58_3243043   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_58_4035282   "0/1"          "1/1"          "0/0"         
## HiC_scaffold_58_5442157   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_58_8004631   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_58_8058998   "0|1"          "0/0"          "0/1"         
## HiC_scaffold_58_8932837   "1/1"          NA             NA            
## HiC_scaffold_58_14814944  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_58_15639988  NA             "0/0"          "1/1"         
## HiC_scaffold_58_15707198  "1/1"          NA             "0/0"         
## HiC_scaffold_58_15707258  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_58_15710623  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_58_19155063  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_58_20224050  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_58_38475355  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_59_3979055   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_59_5071810   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_59_5349936   "0/1"          "0/0"          NA            
## HiC_scaffold_59_5350114   "0/1"          "0/0"          "1/1"         
## HiC_scaffold_59_7738302   NA             "1/1"          "1/1"         
## HiC_scaffold_59_7738351   "0/1"          "1/1"          "1/1"         
## HiC_scaffold_59_7958561   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_59_9273798   "1/1"          NA             "1/1"         
## HiC_scaffold_59_50928099  "0/0"          NA             NA            
## HiC_scaffold_59_52960060  "0/0"          NA             "0/1"         
## HiC_scaffold_6_10569023   "1/1"          NA             "0/1"         
## HiC_scaffold_6_10711445   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_6_13209200   "0/0"          "0|1"          "0/1"         
## HiC_scaffold_6_13213107   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_6_13311684   "0/0"          "1/1"          "1|1"         
## HiC_scaffold_6_15670783   "1|1"          NA             "1|1"         
## HiC_scaffold_6_19111232   "0/0"          "0/0"          NA            
## HiC_scaffold_6_32805498   "0/0"          NA             "0/0"         
## HiC_scaffold_6_38793174   NA             "1|1"          "0/1"         
## HiC_scaffold_6_41092101   "0/0"          "1/1"          "1|1"         
## HiC_scaffold_6_41342933   "1/1"          "1/1"          "0/1"         
## HiC_scaffold_6_47594508   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_60_70878     NA             "1|1"          "1|1"         
## HiC_scaffold_60_99549     NA             "0/0"          "0/0"         
## HiC_scaffold_60_201823    "1/1"          "0/1"          "1/1"         
## HiC_scaffold_60_712969    "1|1"          "1|1"          "1|1"         
## HiC_scaffold_60_744783    "1/1"          NA             "1|1"         
## HiC_scaffold_60_744788    "0/0"          NA             "0/0"         
## HiC_scaffold_60_22142128  "0/0"          "0|1"          NA            
## HiC_scaffold_60_27599770  NA             "0/1"          "0/0"         
## HiC_scaffold_60_30608878  "1|1"          NA             NA            
## HiC_scaffold_60_32657324  NA             NA             "0/0"         
## HiC_scaffold_60_32672580  "0|1"          NA             "1/1"         
## HiC_scaffold_60_38856893  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_60_39028335  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_60_40296869  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_60_42775723  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_60_44687906  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_60_44804601  "0/0"          NA             "0/0"         
## HiC_scaffold_60_53696867  NA             "0|1"          "1|1"         
## HiC_scaffold_60_53696868  NA             "0|1"          "1|1"         
## HiC_scaffold_60_60651515  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_60_70678462  NA             NA             "1/1"         
## HiC_scaffold_61_2205328   "1/1"          NA             "1/1"         
## HiC_scaffold_61_2491706   NA             NA             NA            
## HiC_scaffold_61_4009916   "0/0"          NA             "0/0"         
## HiC_scaffold_61_4062917   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_61_4122763   "1|1"          "1|1"          NA            
## HiC_scaffold_61_4216461   "1/1"          NA             "1/1"         
## HiC_scaffold_61_4325053   NA             NA             "1/1"         
## HiC_scaffold_61_9004838   "1|1"          NA             "1|1"         
## HiC_scaffold_61_14635083  "0|1"          "0/1"          "0|1"         
## HiC_scaffold_62_1128608   "1/1"          "1/1"          NA            
## HiC_scaffold_62_11335200  "0/0"          "0|1"          "0|0"         
## HiC_scaffold_62_18828476  NA             "1/1"          "1/1"         
## HiC_scaffold_62_21548870  "1|1"          NA             "1|1"         
## HiC_scaffold_62_23103274  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_62_25793456  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_62_25887474  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_62_28516096  "0/0"          NA             "0/0"         
## HiC_scaffold_62_28516099  "0/0"          NA             "0/0"         
## HiC_scaffold_62_28818725  "1|1"          "1|1"          "0|1"         
## HiC_scaffold_62_28818729  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_62_45207353  "0/0"          NA             "1/1"         
## HiC_scaffold_63_3092269   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_63_3977940   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_63_4084937   "1/1"          NA             "0/0"         
## HiC_scaffold_63_4196326   "1|1"          "0/0"          "0/1"         
## HiC_scaffold_63_6262453   "0/0"          NA             "0/1"         
## HiC_scaffold_63_6350204   "1|1"          NA             "1/1"         
## HiC_scaffold_63_6458794   "0|1"          NA             "0|1"         
## HiC_scaffold_64_9162978   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_64_16876561  "1|1"          "0|1"          "0|1"         
## HiC_scaffold_64_17543009  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_64_18925356  "1/1"          NA             "1/1"         
## HiC_scaffold_64_19133050  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_64_19627769  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_64_20477250  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_64_22816677  "0/0"          NA             "0/1"         
## HiC_scaffold_64_22954654  "1|1"          "1|1"          NA            
## HiC_scaffold_64_22954658  "1|1"          "1|1"          NA            
## HiC_scaffold_64_22954682  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_65_6829971   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_65_8071102   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_65_9023979   "0/0"          NA             "0/0"         
## HiC_scaffold_65_9839671   "0/0"          "0/1"          "0/0"         
## HiC_scaffold_65_10404778  "0/0"          NA             "0|1"         
## HiC_scaffold_65_11327791  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_65_11332104  "1/1"          "0/0"          NA            
## HiC_scaffold_65_34823822  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_65_51418017  "1/1"          "1|1"          "1/1"         
## HiC_scaffold_65_54053979  NA             "1|1"          "1|1"         
## HiC_scaffold_65_57110875  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_66_15615363  "0/1"          "0/0"          "1|1"         
## HiC_scaffold_66_15672090  NA             "0/0"          "0/0"         
## HiC_scaffold_66_17903445  "0/0"          NA             "1|1"         
## HiC_scaffold_66_18298629  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_66_19730676  NA             NA             "0/0"         
## HiC_scaffold_66_23688768  NA             "0/0"          "0/0"         
## HiC_scaffold_66_26614535  NA             "0/0"          "0/0"         
## HiC_scaffold_66_27445665  "0/0"          "1|1"          "1/1"         
## HiC_scaffold_66_29457165  NA             "0/0"          "1/1"         
## HiC_scaffold_66_29457180  "0/0"          NA             "1/1"         
## HiC_scaffold_66_30116287  "1|1"          NA             "1|1"         
## HiC_scaffold_66_31603503  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_66_33261460  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_66_34138981  "1/1"          "0/1"          NA            
## HiC_scaffold_66_34139020  "0/0"          "0/0"          NA            
## HiC_scaffold_66_34142862  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_67_1404390   NA             "0/0"          "0/1"         
## HiC_scaffold_67_28493665  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_67_30243885  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_67_31511806  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_67_34638092  "0/1"          NA             "1/1"         
## HiC_scaffold_67_37534720  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_67_39679546  "1/1"          NA             "1/1"         
## HiC_scaffold_67_39854918  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_67_39860738  "1/1"          "0/1"          "0/1"         
## HiC_scaffold_67_40331656  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_67_40824747  "1|1"          NA             NA            
## HiC_scaffold_68_3438132   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_68_3438133   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_68_11206902  NA             "0/1"          "1/1"         
## HiC_scaffold_68_32770607  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_68_34016823  "2|2"          NA             "0/0"         
## HiC_scaffold_68_34020019  "0/0"          NA             "1/1"         
## HiC_scaffold_68_40296057  "0/0"          NA             "0/0"         
## HiC_scaffold_68_40296059  "0/0"          NA             "0/0"         
## HiC_scaffold_68_65001879  "1/1"          NA             "1/1"         
## HiC_scaffold_69_23311147  "0/0"          NA             "0|2"         
## HiC_scaffold_69_27351303  "0/0"          "0/0"          NA            
## HiC_scaffold_69_29437208  "1/1"          NA             "1|1"         
## HiC_scaffold_69_33699381  "1|1"          NA             NA            
## HiC_scaffold_69_40194698  "1/1"          NA             NA            
## HiC_scaffold_69_48273575  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_69_48348026  "0|1"          "1/1"          "0|1"         
## HiC_scaffold_69_48348034  "0|1"          "0/0"          "0/1"         
## HiC_scaffold_69_49563252  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_69_49593952  "0/0"          NA             "1/1"         
## HiC_scaffold_69_49859037  "1|1"          NA             "0/0"         
## HiC_scaffold_69_51271238  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_69_51529836  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_69_57313650  "0/0"          "1|1"          "1/1"         
## HiC_scaffold_69_57359194  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_6951_523650  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_6951_897126  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_6951_1134482 "0/0"          "1|1"          "1|1"         
## HiC_scaffold_6951_2484960 "0/0"          NA             "0/0"         
## HiC_scaffold_6951_3301273 "0/0"          "0/0"          "1|1"         
## HiC_scaffold_6951_3314609 "1/1"          "1/1"          "1/1"         
## HiC_scaffold_6951_3945993 "1|1"          "1|1"          "0/0"         
## HiC_scaffold_6958_218293  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_6958_449143  NA             "0/0"          "1/1"         
## HiC_scaffold_7_351023     "0/0"          NA             "0/0"         
## HiC_scaffold_7_488024     "0/0"          "0/0"          "1|1"         
## HiC_scaffold_7_492663     "0/0"          "0/1"          NA            
## HiC_scaffold_7_693567     "1|1"          "1|1"          "0/0"         
## HiC_scaffold_7_2379128    NA             NA             "0/1"         
## HiC_scaffold_7_3087721    "0/1"          "0/1"          "1/1"         
## HiC_scaffold_7_3394880    "0/0"          "0/0"          "1/1"         
## HiC_scaffold_7_22247106   "1|1"          "0/0"          "0/1"         
## HiC_scaffold_70_4632611   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_70_14042778  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_71_410844    NA             "0/0"          "0/0"         
## HiC_scaffold_71_1753451   "0/0"          "1/1"          NA            
## HiC_scaffold_71_2283682   "0/0"          "0/0"          NA            
## HiC_scaffold_71_3439685   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_71_17850462  "1/1"          NA             "0/0"         
## HiC_scaffold_71_20588314  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_71_25465351  "1|1"          NA             "0/0"         
## HiC_scaffold_71_25465352  "1|1"          NA             "0/0"         
## HiC_scaffold_71_26356062  NA             NA             "0/1"         
## HiC_scaffold_72_11785096  NA             NA             "1/1"         
## HiC_scaffold_72_17285854  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_72_23704999  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_72_24465318  "0/0"          "0|1"          "0|1"         
## HiC_scaffold_72_30457277  "0/0"          "0/0"          NA            
## HiC_scaffold_72_32068649  "0/0"          NA             "1/1"         
## HiC_scaffold_72_35058295  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_72_36024997  "0/1"          "1|1"          "0/0"         
## HiC_scaffold_72_37135067  NA             "0/0"          "0|1"         
## HiC_scaffold_72_38410141  "0/0"          NA             "0/0"         
## HiC_scaffold_72_38448056  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_72_41412511  "0/1"          "0/0"          NA            
## HiC_scaffold_73_2192629   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_73_2920208   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_73_4522493   NA             "1|1"          NA            
## HiC_scaffold_73_4748625   "0/0"          NA             "0/0"         
## HiC_scaffold_73_5839336   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_73_9338582   "1/1"          "0/0"          NA            
## HiC_scaffold_73_27393859  "0/0"          NA             "0/0"         
## HiC_scaffold_74_14235619  NA             "1/1"          "1/1"         
## HiC_scaffold_74_14515598  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_74_15116121  "0/0"          NA             "0/1"         
## HiC_scaffold_74_17233613  "0/0"          NA             "1/1"         
## HiC_scaffold_74_17725340  "0/0"          "1|1"          "0|1"         
## HiC_scaffold_74_18418135  "1|1"          NA             "0/0"         
## HiC_scaffold_74_18418138  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_74_21254425  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_74_22261065  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_74_47132519  "1|1"          NA             "0/0"         
## HiC_scaffold_74_50979096  NA             "0/0"          "1/1"         
## HiC_scaffold_74_51060549  NA             "0/0"          "0/0"         
## HiC_scaffold_74_53256803  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_74_55464169  "0/1"          NA             "0/1"         
## HiC_scaffold_74_55515512  "0/0"          NA             NA            
## HiC_scaffold_74_55999260  NA             "0/0"          "0/0"         
## HiC_scaffold_74_57404902  "1|1"          NA             "1|1"         
## HiC_scaffold_74_58181927  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_74_58198600  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_74_63060195  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_75_5345466   "1|1"          "0/0"          NA            
## HiC_scaffold_75_5346522   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_75_5346535   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_75_9850973   "1/1"          "1/1"          NA            
## HiC_scaffold_76_27149820  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_76_31582908  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_76_31792815  "1/1"          NA             "0/1"         
## HiC_scaffold_76_35352820  NA             "0/0"          "1/1"         
## HiC_scaffold_76_57782171  "0/1"          "1/1"          "0/1"         
## HiC_scaffold_76_59862401  NA             "1|1"          "0/0"         
## HiC_scaffold_76_61095594  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_76_65496128  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_76_68965847  "1/1"          NA             "1/1"         
## HiC_scaffold_76_68966411  "1/1"          NA             "1/1"         
## HiC_scaffold_76_69823482  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_76_73343841  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_77_3598274   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_77_6982137   NA             NA             "0/0"         
## HiC_scaffold_77_11021994  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_77_13608165  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_77_16888594  "0/1"          "1|1"          "0/0"         
## HiC_scaffold_77_16888623  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_77_16889448  NA             "0/0"          "1/1"         
## HiC_scaffold_77_39784685  "1|1"          "1|1"          NA            
## HiC_scaffold_77_44375866  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_77_45385370  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_78_5719919   NA             "0/1"          NA            
## HiC_scaffold_78_11353297  "1|1"          "0/0"          "0|1"         
## HiC_scaffold_78_27316392  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_78_48124809  "0/0"          "0/0"          "2|2"         
## HiC_scaffold_78_48124826  "1/1"          "1/1"          "1|1"         
## HiC_scaffold_78_48126176  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_78_48279096  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_78_48434558  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_78_49759181  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_78_49759192  "1|1"          NA             "0/0"         
## HiC_scaffold_78_49759215  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_78_51364025  "1/1"          "1/1"          NA            
## HiC_scaffold_78_55395445  "0/0"          NA             "0/1"         
## HiC_scaffold_78_59610866  "0/0"          "0/0"          NA            
## HiC_scaffold_78_62136661  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_79_1643780   NA             NA             "0/0"         
## HiC_scaffold_79_2519178   "0/1"          "1/1"          "1/1"         
## HiC_scaffold_79_2858100   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_79_3922454   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_79_4127878   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_79_4543693   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_79_11507678  NA             NA             "0/0"         
## HiC_scaffold_79_12618812  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_79_14185404  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_79_17120237  "0/0"          NA             "0/1"         
## HiC_scaffold_79_17120254  "0/0"          NA             "0/1"         
## HiC_scaffold_79_35551507  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_79_35551543  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_79_38927423  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_79_42623307  NA             "1|1"          NA            
## HiC_scaffold_79_43179786  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_79_43180099  "1/1"          NA             "1/1"         
## HiC_scaffold_79_43828078  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_79_43872513  "0/0"          NA             "0/0"         
## HiC_scaffold_79_44627215  NA             NA             "1/1"         
## HiC_scaffold_79_50772769  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_79_55468575  NA             NA             "1/1"         
## HiC_scaffold_79_55816114  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_79_59915784  NA             NA             "0/0"         
## HiC_scaffold_79_60165298  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_79_60165305  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_79_69145556  "0/2"          NA             "0/2"         
## HiC_scaffold_79_70208305  "0|1"          NA             "0|1"         
## HiC_scaffold_79_73412292  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_79_73416663  NA             "1|1"          "1|1"         
## HiC_scaffold_79_73416688  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_79_76863102  NA             NA             "0/0"         
## HiC_scaffold_79_81279649  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_79_81499990  "0/1"          "1/1"          "0/1"         
## HiC_scaffold_79_82319836  "1|1"          "1|1"          NA            
## HiC_scaffold_79_82319849  "1|1"          "1|1"          "1/1"         
## HiC_scaffold_79_83163707  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_79_86283512  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_79_87123758  NA             NA             "0/0"         
## HiC_scaffold_79_88362889  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_79_88599431  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_79_89322919  "0/0"          NA             "0/1"         
## HiC_scaffold_79_89331918  "0/0"          NA             "0/0"         
## HiC_scaffold_79_91340958  "0|1"          "1|1"          "0|1"         
## HiC_scaffold_8_13649836   NA             "1|1"          "0|1"         
## HiC_scaffold_8_13650752   "1|1"          NA             "1|1"         
## HiC_scaffold_8_23818233   "0/0"          NA             "0/1"         
## HiC_scaffold_8_24123972   "0/1"          NA             NA            
## HiC_scaffold_8_24230791   "0/1"          NA             "0/0"         
## HiC_scaffold_8_24588423   "0|2"          "0/0"          "0/0"         
## HiC_scaffold_8_25348483   "0/0"          "1/1"          "0/1"         
## HiC_scaffold_8_25421933   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_8_25772942   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_8_26289589   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_8_27602740   "0/0"          "0/1"          "0|1"         
## HiC_scaffold_8_28159063   "1/1"          NA             "0/1"         
## HiC_scaffold_8_30829320   NA             "1/1"          "0/0"         
## HiC_scaffold_8_31044084   "0/0"          "1|1"          "0/1"         
## HiC_scaffold_8_31415507   NA             "0/0"          "0/0"         
## HiC_scaffold_8_32594682   "0/0"          "0/0"          "0|1"         
## HiC_scaffold_80_3617847   "1/1"          "0/1"          "0/0"         
## HiC_scaffold_80_5758183   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_80_6760006   "0/0"          "0|1"          "1|1"         
## HiC_scaffold_80_6760037   "0/0"          "0/1"          "1/1"         
## HiC_scaffold_80_7772622   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_80_7919533   "0|2"          NA             "0/1"         
## HiC_scaffold_80_8110052   "0/1"          "1|1"          "0/0"         
## HiC_scaffold_80_8193366   "1/1"          NA             "1/1"         
## HiC_scaffold_80_8625784   "1/1"          "1/1"          NA            
## HiC_scaffold_80_8912846   "1/1"          NA             "1/1"         
## HiC_scaffold_80_9544102   NA             "1/1"          "1/1"         
## HiC_scaffold_80_10770701  "0/0"          "0/0"          NA            
## HiC_scaffold_80_11590146  "1/1"          NA             "1/1"         
## HiC_scaffold_80_16953653  NA             "0/0"          NA            
## HiC_scaffold_80_18938832  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_80_19015946  "1/1"          NA             "1/1"         
## HiC_scaffold_80_19404001  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_80_25346708  "0/0"          NA             "0/1"         
## HiC_scaffold_80_37479851  "0/0"          NA             "0/0"         
## HiC_scaffold_80_37507516  "0/0"          NA             "1/1"         
## HiC_scaffold_81_1187192   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_81_2689826   NA             NA             "1|1"         
## HiC_scaffold_81_2690751   "0/0"          NA             "1|1"         
## HiC_scaffold_81_6614123   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_81_7836855   "0/1"          "0/0"          "0/1"         
## HiC_scaffold_81_10334868  NA             "0/0"          "1/1"         
## HiC_scaffold_81_10458752  "0/0"          NA             "0/0"         
## HiC_scaffold_81_17515538  "1|1"          "1/1"          "1|1"         
## HiC_scaffold_81_40271282  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_81_40271294  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_81_41096427  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_81_41096444  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_81_43820595  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_81_43820732  NA             "1|1"          "0/0"         
## HiC_scaffold_81_43854278  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_81_44804862  "1/1"          NA             "0/0"         
## HiC_scaffold_81_45063428  NA             "0|1"          "0/0"         
## HiC_scaffold_81_45950590  "0/1"          NA             "0/1"         
## HiC_scaffold_81_46714752  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_81_46714759  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_81_47170397  "1|1"          NA             "1|1"         
## HiC_scaffold_81_47628201  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_81_48105216  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_81_48932070  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_81_54050146  NA             NA             "1/1"         
## HiC_scaffold_82_5672063   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_82_8796823   NA             NA             "1|1"         
## HiC_scaffold_82_13450959  "0/0"          NA             "0/0"         
## HiC_scaffold_82_26144442  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_82_26147011  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_82_28907834  NA             "0/0"          "0/0"         
## HiC_scaffold_82_34413793  "1/1"          "0|1"          "0/0"         
## HiC_scaffold_82_34413800  NA             "0|1"          "0/0"         
## HiC_scaffold_82_36173035  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_82_40539273  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_82_41470256  NA             "1/1"          "1/1"         
## HiC_scaffold_83_23993605  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_83_35035961  "0/0"          NA             "0/0"         
## HiC_scaffold_83_43423618  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_83_46920654  NA             "0/0"          NA            
## HiC_scaffold_83_46934197  "1|1"          "0/0"          NA            
## HiC_scaffold_84_356301    "1|1"          NA             "0/1"         
## HiC_scaffold_84_5761817   NA             NA             "0/0"         
## HiC_scaffold_84_5769022   "1|1"          "0/0"          NA            
## HiC_scaffold_84_6288130   "0/1"          "0/0"          "0/1"         
## HiC_scaffold_84_6288141   "1/1"          "1|1"          "0/0"         
## HiC_scaffold_84_6288147   "0/1"          "1|1"          "0/0"         
## HiC_scaffold_84_7069238   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_84_9131309   "1/1"          NA             "1/1"         
## HiC_scaffold_84_10148442  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_84_14659391  "1/1"          NA             "1/1"         
## HiC_scaffold_84_16302752  "2|2"          "1/1"          "0/0"         
## HiC_scaffold_84_18463244  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_84_22909575  NA             "1|1"          "0/0"         
## HiC_scaffold_84_29275266  "0/0"          NA             NA            
## HiC_scaffold_84_31184610  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_84_33093169  NA             "0/0"          "0/0"         
## HiC_scaffold_84_37675180  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_84_39501814  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_84_50169438  "0|1"          NA             "0/0"         
## HiC_scaffold_84_50169445  "0|1"          NA             "0/0"         
## HiC_scaffold_84_51231025  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_85_9792207   "1|1"          "1|1"          "0|1"         
## HiC_scaffold_85_11784233  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_85_11911022  "0/0"          "1|1"          NA            
## HiC_scaffold_85_11911142  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_85_11913828  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_85_11913831  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_85_12353081  "0/1"          "0/1"          "0/0"         
## HiC_scaffold_85_12414551  "0/0"          "0/2"          "0/0"         
## HiC_scaffold_85_13043967  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_85_13221888  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_85_27008863  "0/1"          NA             "0/1"         
## HiC_scaffold_85_28992264  "0|1"          "0/0"          "1/1"         
## HiC_scaffold_85_28992268  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_85_64310850  "0/0"          NA             "1|1"         
## HiC_scaffold_85_65135112  "0|2"          "0/0"          "0/0"         
## HiC_scaffold_85_65563529  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_86_1949664   "0/0"          "0/0"          "0|1"         
## HiC_scaffold_86_5340423   "0/0"          NA             "0/0"         
## HiC_scaffold_86_5483991   "0/0"          NA             "1|1"         
## HiC_scaffold_86_8928469   NA             "0/0"          "1/1"         
## HiC_scaffold_86_23727924  "0/0"          "0/0"          NA            
## HiC_scaffold_86_24825818  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_86_25333718  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_86_29668168  "0/0"          NA             "1|1"         
## HiC_scaffold_86_30914243  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_86_32040320  "0|1"          "0/0"          "0|1"         
## HiC_scaffold_86_32040329  "0|1"          "0/0"          "0|1"         
## HiC_scaffold_86_32125061  "0/0"          NA             "0/1"         
## HiC_scaffold_86_32144758  "0/0"          "1/1"          NA            
## HiC_scaffold_86_32153692  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_86_32534129  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_86_32605768  NA             NA             "1|1"         
## HiC_scaffold_86_36355399  NA             "0/0"          "0/0"         
## HiC_scaffold_86_36357265  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_87_1253643   "1/1"          "0/0"          "0/1"         
## HiC_scaffold_87_2137958   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_87_3980100   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_87_4395923   NA             NA             "0/0"         
## HiC_scaffold_87_5489328   "1|1"          "1|1"          "0/1"         
## HiC_scaffold_87_6300441   "1|1"          NA             "1/1"         
## HiC_scaffold_87_16306904  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_87_44780945  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_88_5584327   "1|1"          "1/1"          "0/1"         
## HiC_scaffold_88_7104630   "0/0"          NA             "0|1"         
## HiC_scaffold_88_7104631   "0/0"          NA             "1|1"         
## HiC_scaffold_88_7104638   "0|1"          NA             "1|1"         
## HiC_scaffold_88_7104639   "0|1"          NA             "1|1"         
## HiC_scaffold_88_7104640   "0|1"          NA             "0/1"         
## HiC_scaffold_88_7479340   "1/1"          NA             "0/1"         
## HiC_scaffold_88_8773607   "1/1"          "0/0"          "1|1"         
## HiC_scaffold_88_9883678   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_88_10878718  "0/0"          NA             "0/0"         
## HiC_scaffold_88_19365116  NA             "1/1"          "1/1"         
## HiC_scaffold_88_20477349  "0/1"          "1|1"          "0/0"         
## HiC_scaffold_88_20557885  "1/1"          "0/1"          "0/1"         
## HiC_scaffold_89_675045    NA             NA             "0/0"         
## HiC_scaffold_89_2815845   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_89_2843940   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_89_3018830   "1/1"          NA             "0/1"         
## HiC_scaffold_89_13745506  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_89_30006907  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_89_36509388  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_89_38703735  "0/0"          "1/1"          NA            
## HiC_scaffold_89_38764895  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_89_42052609  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_89_42054991  "1/1"          NA             "1/1"         
## HiC_scaffold_89_44306958  "0/1"          NA             "1/1"         
## HiC_scaffold_89_44338206  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_89_45298973  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_9_3529921    "0/0"          "1/1"          "0/0"         
## HiC_scaffold_9_5660454    "0/0"          "0|1"          "0/0"         
## HiC_scaffold_9_5660461    "1/1"          "1|1"          "1|1"         
## HiC_scaffold_9_5854070    "1/1"          NA             "1/1"         
## HiC_scaffold_9_6142415    "0|1"          "1|1"          NA            
## HiC_scaffold_9_6142436    "0|1"          "1|1"          NA            
## HiC_scaffold_9_6143781    "1/1"          NA             "1/1"         
## HiC_scaffold_9_6654825    "1/1"          "0/0"          "0/0"         
## HiC_scaffold_9_7094545    "1|1"          NA             "0/0"         
## HiC_scaffold_9_7100208    "1|1"          "0/0"          "0/0"         
## HiC_scaffold_9_7109988    "0/0"          "0/0"          "0/0"         
## HiC_scaffold_9_7111922    NA             "0/0"          "0/0"         
## HiC_scaffold_9_8235781    "1/1"          "1/1"          "1/1"         
## HiC_scaffold_9_8279558    NA             NA             NA            
## HiC_scaffold_9_15679481   "0/0"          NA             NA            
## HiC_scaffold_9_18082611   "0/0"          NA             "0/0"         
## HiC_scaffold_9_18090830   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_9_30240531   "1/1"          "0/1"          NA            
## HiC_scaffold_90_10418696  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_90_11470224  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_90_13593319  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_90_16260161  "1|1"          NA             "0/0"         
## HiC_scaffold_90_22325499  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_90_23574204  "1|1"          "0/0"          "0|1"         
## HiC_scaffold_90_23609908  "1|1"          NA             "0/1"         
## HiC_scaffold_90_23623078  "1|1"          NA             "1|1"         
## HiC_scaffold_90_23626883  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_90_23812663  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_90_25939283  "0/0"          NA             "0/1"         
## HiC_scaffold_90_25985714  NA             "0/0"          "0/1"         
## HiC_scaffold_90_30751272  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_90_31232025  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_90_31245699  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_90_31527975  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_90_31546172  "0|1"          "0/0"          "0/1"         
## HiC_scaffold_90_38511996  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_90_38511999  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_90_38517279  NA             NA             NA            
## HiC_scaffold_90_40624104  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_91_5644765   "0/0"          "0/0"          NA            
## HiC_scaffold_91_5867214   "1|1"          "1|1"          "0|1"         
## HiC_scaffold_91_5867226   "1|1"          "1|1"          "0|1"         
## HiC_scaffold_91_7704263   "0/0"          NA             "0/0"         
## HiC_scaffold_91_7871360   "1/1"          NA             "1/1"         
## HiC_scaffold_91_8538014   "1/1"          NA             "1/1"         
## HiC_scaffold_91_13230485  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_91_28696118  NA             NA             "1|1"         
## HiC_scaffold_91_28696625  "0/1"          NA             "0/0"         
## HiC_scaffold_91_42177482  "1|1"          "0/0"          NA            
## HiC_scaffold_91_46813640  NA             "0/1"          "0/0"         
## HiC_scaffold_92_23783035  "0|2"          NA             "0/1"         
## HiC_scaffold_92_23783036  "0|2"          NA             "0/1"         
## HiC_scaffold_92_24712793  "0/0"          "1|1"          NA            
## HiC_scaffold_92_28698258  NA             NA             "0/1"         
## HiC_scaffold_92_40691582  "2/2"          NA             "0/0"         
## HiC_scaffold_92_43967712  NA             "0/1"          "0|1"         
## HiC_scaffold_92_47147572  "0|1"          "0|1"          "1|1"         
## HiC_scaffold_92_49042714  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_92_49042715  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_92_53634002  "1|1"          "1/1"          "1/1"         
## HiC_scaffold_92_58211868  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_92_60114155  "1|1"          NA             NA            
## HiC_scaffold_92_63603483  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_92_64797225  "0/2"          NA             "0/2"         
## HiC_scaffold_92_68367476  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_93_1912167   "1|1"          "1/1"          "0/0"         
## HiC_scaffold_93_2485978   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_93_3227638   "1/1"          NA             "0/0"         
## HiC_scaffold_93_3227641   "0/0"          NA             "1|1"         
## HiC_scaffold_93_13971208  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_93_13987080  NA             "1/1"          "0/1"         
## HiC_scaffold_93_21125468  "0/0"          NA             "1/1"         
## HiC_scaffold_93_21845293  "0/0"          NA             "0/1"         
## HiC_scaffold_93_21845310  "1|1"          NA             "0/0"         
## HiC_scaffold_93_21846342  "0/0"          NA             "0|1"         
## HiC_scaffold_93_21846356  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_93_22589723  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_93_22619278  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_93_22631258  "0|1"          NA             "1|1"         
## HiC_scaffold_93_22631266  "0|1"          NA             "1|1"         
## HiC_scaffold_94_3110102   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_94_3205919   "0/0"          "1/1"          "1|1"         
## HiC_scaffold_94_9023846   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_94_11572820  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_94_12368532  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_94_42179418  NA             "0/0"          "1/1"         
## HiC_scaffold_94_42179519  NA             "0/1"          "0/0"         
## HiC_scaffold_94_51646206  "0/0"          NA             "0/0"         
## HiC_scaffold_94_52781289  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_94_53790035  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_94_53792738  "0/1"          NA             NA            
## HiC_scaffold_94_56768905  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_946_81276    "0/0"          NA             "1/1"         
## HiC_scaffold_95_3189690   "1/1"          "1/1"          NA            
## HiC_scaffold_95_4397298   NA             "0/0"          "1|1"         
## HiC_scaffold_95_9469157   "1|1"          "0/0"          "0|1"         
## HiC_scaffold_95_10641411  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_95_10949821  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_95_12993394  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_95_15515793  "1|1"          "0/0"          "0|1"         
## HiC_scaffold_95_15608785  "0|1"          "0/0"          "0|1"         
## HiC_scaffold_95_15609137  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_95_16295316  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_95_22656165  "0|1"          "0|0"          "0/0"         
## HiC_scaffold_95_25885727  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_96_10460019  "1/1"          NA             "0/0"         
## HiC_scaffold_96_27155785  NA             "0/1"          "0/0"         
## HiC_scaffold_96_37939434  "0|1"          "0/0"          NA            
## HiC_scaffold_96_51115048  "1|1"          NA             "1/1"         
## HiC_scaffold_96_51116511  "1/1"          NA             "0/1"         
## HiC_scaffold_96_51915040  "0|1"          NA             "1|1"         
## HiC_scaffold_96_52681287  NA             "0/0"          "0/0"         
## HiC_scaffold_96_53276519  NA             "0/1"          "0/0"         
## HiC_scaffold_97_1736926   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_97_1736994   "0/1"          NA             "0/0"         
## HiC_scaffold_97_3863543   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_97_4200445   NA             NA             "0/0"         
## HiC_scaffold_97_4799162   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_97_5027892   "1/1"          "1/1"          "0/1"         
## HiC_scaffold_97_8007933   NA             "0/0"          "0/0"         
## HiC_scaffold_97_17997210  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_97_18604647  "1/1"          NA             "1/1"         
## HiC_scaffold_97_20239636  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_98_15154096  "1|1"          NA             "0/1"         
## HiC_scaffold_98_22342667  NA             NA             "1/1"         
## HiC_scaffold_98_22634293  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_98_22634294  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_98_22721138  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_98_22869378  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_98_24108405  NA             "1|1"          "1|1"         
## HiC_scaffold_98_27359592  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_98_28549834  "0/0"          NA             "1/1"         
## HiC_scaffold_98_28867520  "0/1"          "0|1"          "0/1"         
## HiC_scaffold_98_28867524  "0/0"          "0|2"          "0/0"         
## HiC_scaffold_98_29431717  "1|1"          "0/1"          "1|1"         
## HiC_scaffold_98_29675109  "0/0"          NA             "0/0"         
## HiC_scaffold_99_1163244   "0/0"          "1/1"          "1/1"         
## HiC_scaffold_99_1451611   "0/0"          NA             "0/0"         
## HiC_scaffold_99_2021961   "0/0"          "2|2"          "1|1"         
## HiC_scaffold_99_5134392   "0/1"          NA             "0/0"         
## HiC_scaffold_99_5239109   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_99_6917738   "1|1"          NA             "1|1"         
## HiC_scaffold_99_11221970  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_99_25982503  "1/1"          NA             "0/0"         
##                           Tank_1_Crab_1 Tank_1_Crab_2 Tank_1_Crab_3
## HiC_scaffold_1_2523394    "0/0"         "0/0"         "0/0"        
## HiC_scaffold_1_2542157    "0/1"         NA            "0/0"        
## HiC_scaffold_1_2647806    "1/1"         "1/1"         "1/1"        
## HiC_scaffold_1_2970226    "0/0"         "1|1"         "0/0"        
## HiC_scaffold_1_3329447    NA            "0/0"         "0/0"        
## HiC_scaffold_1_3795100    NA            "0/0"         NA           
## HiC_scaffold_10_2221345   "0/0"         "1|1"         "1/1"        
## HiC_scaffold_10_2299490   "0/0"         "0/0"         "0|1"        
## HiC_scaffold_10_2565301   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_10_3864355   "1/1"         "0/1"         "0/1"        
## HiC_scaffold_10_4319900   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_10_4319907   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_10_5404579   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_10_5843373   NA            "1/1"         "0/0"        
## HiC_scaffold_100_854947   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_100_1070817  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_100_2002094  "0/0"         NA            "0/0"        
## HiC_scaffold_100_2002097  "0/0"         NA            "0/0"        
## HiC_scaffold_100_2010331  "1|1"         NA            "0/0"        
## HiC_scaffold_100_5186498  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_100_5828477  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_100_6470419  NA            "0/0"         "1|1"        
## HiC_scaffold_100_6739225  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_100_6739258  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_100_6739264  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_100_6907177  "0/0"         "0/0"         NA           
## HiC_scaffold_100_8384481  NA            NA            "0/0"        
## HiC_scaffold_100_8384495  NA            NA            "0/0"        
## HiC_scaffold_100_9451470  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_100_10464574 "0/1"         "0/1"         "0/0"        
## HiC_scaffold_100_11934792 "0/0"         NA            "0/0"        
## HiC_scaffold_100_11980177 "1/1"         NA            "1/1"        
## HiC_scaffold_100_18465760 "0/0"         "0/0"         "1|1"        
## HiC_scaffold_100_18465762 "0/0"         "0/0"         "1|1"        
## HiC_scaffold_100_18466205 "0/0"         "0/0"         "0/0"        
## HiC_scaffold_100_31738115 "1/1"         "0/0"         "0/0"        
## HiC_scaffold_100_44227362 "1|1"         NA            NA           
## HiC_scaffold_101_12808961 NA            "0/0"         "0/0"        
## HiC_scaffold_101_13897149 "1/1"         "0|1"         "0/0"        
## HiC_scaffold_101_18337279 "0/1"         NA            "0/0"        
## HiC_scaffold_101_20800167 NA            "1/1"         NA           
## HiC_scaffold_102_2260041  NA            "0/0"         NA           
## HiC_scaffold_102_8734519  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_102_10233999 NA            "0/0"         "1|1"        
## HiC_scaffold_102_11446042 NA            "0/1"         NA           
## HiC_scaffold_102_15918694 NA            "1|1"         "1/1"        
## HiC_scaffold_102_15935667 "0/0"         "1|1"         "1|1"        
## HiC_scaffold_102_17442643 "1/1"         NA            "0/1"        
## HiC_scaffold_102_17608969 "0/0"         "0/0"         "1/1"        
## HiC_scaffold_102_20180185 NA            NA            "1/1"        
## HiC_scaffold_102_24788723 "0/0"         NA            "0/0"        
## HiC_scaffold_102_25423729 "1|1"         "1|1"         NA           
## HiC_scaffold_102_39755142 "0/0"         "0/0"         "1/1"        
## HiC_scaffold_102_52046978 "1/1"         NA            "0/0"        
## HiC_scaffold_1027_34152   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_103_601715   "1/1"         "1/1"         "0/1"        
## HiC_scaffold_103_2891384  "1/1"         "0/0"         NA           
## HiC_scaffold_103_8191270  "0/0"         "1/1"         NA           
## HiC_scaffold_103_9521272  NA            "1/1"         NA           
## HiC_scaffold_103_14768909 NA            "0/0"         NA           
## HiC_scaffold_103_19312119 NA            "1|1"         "1/1"        
## HiC_scaffold_103_21284866 "0/0"         "0/0"         "0/0"        
## HiC_scaffold_103_31428453 "0/0"         "1|1"         "1|1"        
## HiC_scaffold_103_42567396 "1/1"         "1|1"         NA           
## HiC_scaffold_103_45921571 NA            "0/0"         "0/0"        
## HiC_scaffold_103_45921573 "0/0"         "0/0"         "0/0"        
## HiC_scaffold_103_49592022 "1|1"         "0/1"         "0/0"        
## HiC_scaffold_103_49620132 "0/0"         "0/0"         "1|1"        
## HiC_scaffold_103_50440915 "0/0"         NA            "0/0"        
## HiC_scaffold_103_51944137 "0/0"         "1/1"         "1/1"        
## HiC_scaffold_103_54308582 "0/0"         "0/0"         "1|1"        
## HiC_scaffold_103_54424067 "0/0"         "0/0"         "0/0"        
## HiC_scaffold_103_56932900 "1/1"         "1/1"         "1/1"        
## HiC_scaffold_103_57470264 "1|1"         "1|1"         NA           
## HiC_scaffold_104_7771140  NA            "1/1"         "1/1"        
## HiC_scaffold_104_9103028  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_104_10633168 NA            "1/1"         "0/0"        
## HiC_scaffold_104_18917031 NA            "0/1"         "0/0"        
## HiC_scaffold_104_20851902 "0/0"         NA            "0/0"        
## HiC_scaffold_104_24451803 NA            "0/1"         "0/1"        
## HiC_scaffold_104_28597688 "0/0"         "0/0"         NA           
## HiC_scaffold_104_40927999 "0/0"         "1/1"         "1/1"        
## HiC_scaffold_104_46490074 "0/0"         "0/0"         "0/0"        
## HiC_scaffold_104_49759053 NA            "1/1"         "0/0"        
## HiC_scaffold_104_57267896 NA            "1/1"         "0/0"        
## HiC_scaffold_104_62570010 "0/0"         NA            "0/0"        
## HiC_scaffold_11_32804173  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_11_34516508  "1/1"         "1|1"         "1/1"        
## HiC_scaffold_11_35332996  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_11_35904027  NA            "1|1"         "0/0"        
## HiC_scaffold_11_41539793  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_11_41604080  NA            "1/1"         NA           
## HiC_scaffold_11_42855323  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_11_45339409  "0|1"         "1/1"         "0/0"        
## HiC_scaffold_11_45339410  "0/1"         "0/0"         "1|1"        
## HiC_scaffold_11_47544035  "1|1"         "1/1"         "1/1"        
## HiC_scaffold_12_7515164   "0/0"         NA            "0/1"        
## HiC_scaffold_12_12640100  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_12_12826705  "0/0"         NA            "0/0"        
## HiC_scaffold_12_14899285  NA            "0/0"         NA           
## HiC_scaffold_12_17465672  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_12_22770710  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_12_32318964  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_12_35136373  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_12_40687860  NA            "1|1"         "1|1"        
## HiC_scaffold_13_2938168   "1/1"         "0/0"         NA           
## HiC_scaffold_13_20350974  NA            "1/1"         NA           
## HiC_scaffold_13_27759554  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_13_28146828  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_13_28146830  "0/0"         NA            "0/0"        
## HiC_scaffold_13_28925343  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_13_31913129  "0/0"         "0/0"         NA           
## HiC_scaffold_13_32078924  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_13_33864805  "1/1"         "1/1"         NA           
## HiC_scaffold_13_34892542  "0/0"         "1/1"         NA           
## HiC_scaffold_13_34893103  NA            "0/0"         NA           
## HiC_scaffold_13_35762551  NA            "0/0"         NA           
## HiC_scaffold_13_35881745  NA            "1/1"         "1/1"        
## HiC_scaffold_13_35881749  NA            "0/0"         "0/0"        
## HiC_scaffold_14_3843214   NA            "0/0"         "0/0"        
## HiC_scaffold_14_25884262  "0/0"         "0/0"         NA           
## HiC_scaffold_14_27050415  "1/1"         "1/1"         NA           
## HiC_scaffold_14_27118495  "0/1"         NA            NA           
## HiC_scaffold_14_27277222  "0/0"         "0/0"         "0|2"        
## HiC_scaffold_14_29215814  "0/0"         "1|1"         NA           
## HiC_scaffold_15_2460398   "0|1"         "1|1"         "1|1"        
## HiC_scaffold_15_2462980   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_15_2467289   NA            "1/1"         "1/1"        
## HiC_scaffold_15_5669141   "1/1"         NA            NA           
## HiC_scaffold_15_13700694  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_15_17825275  "0|1"         "1|1"         "0/0"        
## HiC_scaffold_15_19938475  "0/0"         "1/1"         "1|1"        
## HiC_scaffold_15_23865956  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_15_28837774  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_15_28837810  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_15_28837823  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_15_28837835  "1|1"         "0|1"         "1|1"        
## HiC_scaffold_15_28837841  "1|1"         "0|1"         "1|1"        
## HiC_scaffold_15_28837854  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_15_34827832  NA            "1/1"         "1/1"        
## HiC_scaffold_15_34893807  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_15_35327348  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_15_42161112  "0/0"         "1|1"         NA           
## HiC_scaffold_15_42164926  NA            "0/0"         "0/0"        
## HiC_scaffold_15_42164946  NA            "0/0"         "0/0"        
## HiC_scaffold_15_46289572  NA            NA            "1/1"        
## HiC_scaffold_15_50591576  NA            NA            NA           
## HiC_scaffold_15_50759128  NA            NA            NA           
## HiC_scaffold_15_51188336  "1|1"         NA            "0/0"        
## HiC_scaffold_15_54726640  "1/1"         NA            NA           
## HiC_scaffold_15_54788235  NA            NA            "0/0"        
## HiC_scaffold_15_56162375  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_15_61091106  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_15_61464359  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_15_61510386  NA            "0/0"         NA           
## HiC_scaffold_15_62309788  "1|1"         "1|1"         NA           
## HiC_scaffold_15_62309793  "1|1"         "1|1"         NA           
## HiC_scaffold_15_62771254  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_15_63493927  NA            "0/1"         "0/1"        
## HiC_scaffold_15_64997502  "1/1"         "0/0"         NA           
## HiC_scaffold_15_65007865  "1/1"         "0|1"         "1/1"        
## HiC_scaffold_15_65007879  "0/0"         "0|1"         "0/0"        
## HiC_scaffold_15_66038529  "0/0"         NA            "1/1"        
## HiC_scaffold_15_69811281  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_16_14205925  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_16_30404047  "0/1"         "0|1"         NA           
## HiC_scaffold_16_57413288  "0/0"         "0/0"         NA           
## HiC_scaffold_16_63687578  NA            "1|1"         "0/0"        
## HiC_scaffold_16_74138787  "1/1"         NA            "0/0"        
## HiC_scaffold_16_74140106  "0/1"         "0/0"         NA           
## HiC_scaffold_16_76276015  "1/1"         "0/1"         "0/0"        
## HiC_scaffold_17_11390873  NA            "0/0"         NA           
## HiC_scaffold_17_12551128  NA            NA            "1/1"        
## HiC_scaffold_17_16615612  "0/0"         NA            "0/0"        
## HiC_scaffold_17_18838093  "0|1"         "1|1"         "1|1"        
## HiC_scaffold_17_22801072  "0/0"         NA            "1/1"        
## HiC_scaffold_17_23788599  "1/1"         NA            NA           
## HiC_scaffold_17_29383895  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_17_29618771  NA            NA            "0/1"        
## HiC_scaffold_17_29976139  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_17_31107213  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_17_32493792  "1|1"         NA            "0/0"        
## HiC_scaffold_17_33732050  "0|1"         "0/1"         "0/0"        
## HiC_scaffold_17_33801314  "0/0"         NA            "0/0"        
## HiC_scaffold_17_34081889  "1/1"         "1/1"         NA           
## HiC_scaffold_18_227565    "0/1"         "0/1"         "0/0"        
## HiC_scaffold_18_1213486   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_18_1701312   "0/0"         "0/0"         NA           
## HiC_scaffold_18_3506437   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_18_6304978   NA            "1/1"         NA           
## HiC_scaffold_18_6351493   "1/1"         NA            "1/1"        
## HiC_scaffold_18_6358009   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_18_10770701  NA            "0/0"         "1/1"        
## HiC_scaffold_18_13342858  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_18_20045832  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_18_22682683  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_18_26337790  NA            NA            NA           
## HiC_scaffold_18_48929148  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_18_51490626  NA            "1/1"         "1/1"        
## HiC_scaffold_18_53723137  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_18_54496637  "0/0"         NA            "0/0"        
## HiC_scaffold_18_55294388  NA            "1/1"         "0/1"        
## HiC_scaffold_19_279726    "0/0"         "0/1"         "0/0"        
## HiC_scaffold_19_6426572   "1/1"         NA            "0/1"        
## HiC_scaffold_19_6575887   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_19_7755254   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_19_9301421   "0/1"         NA            "0/0"        
## HiC_scaffold_19_9357388   "0/0"         "1|1"         "0/0"        
## HiC_scaffold_19_9778841   NA            "0/0"         "0/0"        
## HiC_scaffold_19_10928976  "0|1"         NA            "0/0"        
## HiC_scaffold_19_10928980  "0|1"         NA            "0/0"        
## HiC_scaffold_19_10928982  "0|1"         NA            NA           
## HiC_scaffold_19_11106347  NA            "0/0"         NA           
## HiC_scaffold_19_11590139  NA            "1/1"         NA           
## HiC_scaffold_19_11665300  NA            "1/1"         "1/1"        
## HiC_scaffold_19_14793640  "0/0"         NA            "1/1"        
## HiC_scaffold_19_22112743  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_19_25473671  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_19_25473692  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_19_28110829  "0/0"         NA            "0/0"        
## HiC_scaffold_19_28465002  "1/1"         NA            "1/1"        
## HiC_scaffold_19_28465167  NA            "0|1"         "1|1"        
## HiC_scaffold_19_30106869  "0/0"         NA            "0/0"        
## HiC_scaffold_19_52538858  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_19_52596196  NA            "0/1"         "0/0"        
## HiC_scaffold_19_53482993  "1/1"         "0/1"         "0/0"        
## HiC_scaffold_19_54312637  "1/1"         NA            "1/1"        
## HiC_scaffold_19_59345841  "1|1"         "0/0"         NA           
## HiC_scaffold_2_3296144    "1|1"         "1|1"         "1|1"        
## HiC_scaffold_2_3418589    "1/1"         NA            "0/0"        
## HiC_scaffold_2_3864060    "0/1"         "1|1"         "1/1"        
## HiC_scaffold_2_4104755    "0/0"         "0/0"         NA           
## HiC_scaffold_2_4104758    "0/0"         "0/0"         NA           
## HiC_scaffold_2_8316721    "0/1"         "1/1"         "0|1"        
## HiC_scaffold_2_9098999    "0/1"         "0/1"         "0/0"        
## HiC_scaffold_2_10457537   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_2_19048125   NA            "0/0"         NA           
## HiC_scaffold_2_21748201   NA            NA            "1/1"        
## HiC_scaffold_2_33187764   "0/0"         NA            "0/0"        
## HiC_scaffold_2_33187770   "0/0"         NA            "0/0"        
## HiC_scaffold_2_33187959   "1/1"         "0/0"         NA           
## HiC_scaffold_2_41603929   "0/0"         NA            "0/1"        
## HiC_scaffold_2_52233191   "1/1"         "1|1"         "0/0"        
## HiC_scaffold_2_52400748   NA            "1/1"         NA           
## HiC_scaffold_2_52403793   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_2_52799130   "1/1"         "0/1"         NA           
## HiC_scaffold_20_10332897  NA            "0/0"         NA           
## HiC_scaffold_20_17198418  NA            "1|1"         "0/0"        
## HiC_scaffold_20_17915398  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_20_18872955  NA            "1/1"         NA           
## HiC_scaffold_20_19055301  NA            "1/1"         "1/1"        
## HiC_scaffold_20_19150094  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_20_20651022  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_20_22651296  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_21_2009156   "0/0"         NA            "1|1"        
## HiC_scaffold_21_2435648   "1/1"         NA            "0/0"        
## HiC_scaffold_21_7164210   NA            NA            NA           
## HiC_scaffold_21_9786512   "0/0"         "0/1"         "0/0"        
## HiC_scaffold_21_12424922  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_21_17966833  NA            "1/1"         NA           
## HiC_scaffold_21_19025429  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_21_20058318  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_21_20562855  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_21_20661860  NA            NA            "0/0"        
## HiC_scaffold_21_20895395  NA            "1|1"         "0/0"        
## HiC_scaffold_21_21158811  "1/2"         "0/0"         "0/0"        
## HiC_scaffold_21_22250857  NA            "0/1"         "1/1"        
## HiC_scaffold_21_22250866  NA            "0/1"         "0/0"        
## HiC_scaffold_21_22257737  NA            NA            "0/1"        
## HiC_scaffold_21_22644667  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_21_22644673  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_21_22666888  NA            NA            "1/1"        
## HiC_scaffold_21_23905416  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_21_23981651  "1|1"         "0/0"         "1/1"        
## HiC_scaffold_21_24287068  NA            "0/0"         "1|1"        
## HiC_scaffold_21_30798434  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_21_35006232  NA            "1/1"         "0/0"        
## HiC_scaffold_21_35779294  "0/1"         "0/1"         "0/1"        
## HiC_scaffold_22_124910    "0/0"         NA            "1/1"        
## HiC_scaffold_22_751023    "1/1"         NA            "1|1"        
## HiC_scaffold_22_1042644   "0/0"         NA            NA           
## HiC_scaffold_22_1044708   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_22_2174911   "0/0"         "1/1"         NA           
## HiC_scaffold_22_3431122   NA            "1|1"         "0/0"        
## HiC_scaffold_22_3446787   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_22_3451756   "1/1"         "1|1"         NA           
## HiC_scaffold_22_3720435   NA            "1/1"         NA           
## HiC_scaffold_22_4065466   "1|1"         "0/0"         "1|1"        
## HiC_scaffold_22_4739889   "0/0"         "0/0"         NA           
## HiC_scaffold_22_4918263   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_22_5750008   "1/1"         "0/1"         "1/1"        
## HiC_scaffold_22_5769942   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_22_28264522  "1|1"         NA            "1|1"        
## HiC_scaffold_22_28265115  "1/1"         "1/1"         NA           
## HiC_scaffold_22_29205851  "1/1"         "1/1"         NA           
## HiC_scaffold_22_29822340  NA            "1/1"         NA           
## HiC_scaffold_22_30797357  "1/1"         NA            "0/0"        
## HiC_scaffold_22_32042610  NA            "1|1"         "1|1"        
## HiC_scaffold_23_11215327  "0/0"         "0/0"         NA           
## HiC_scaffold_23_27081333  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_23_28672255  "0/1"         "1/1"         "0/1"        
## HiC_scaffold_23_29218828  NA            NA            NA           
## HiC_scaffold_23_32528768  NA            "0/1"         "1|1"        
## HiC_scaffold_23_32669383  NA            "0|1"         "1/1"        
## HiC_scaffold_23_33199663  NA            "0/0"         "0/0"        
## HiC_scaffold_23_33245843  "0/1"         "0/0"         NA           
## HiC_scaffold_23_40824545  "0|1"         "0/0"         "1|1"        
## HiC_scaffold_23_41504669  NA            NA            "0/0"        
## HiC_scaffold_24_16622654  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_24_16622681  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_24_19851560  NA            "1/1"         "1|1"        
## HiC_scaffold_24_20590563  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_24_27745754  NA            "1/1"         "0/0"        
## HiC_scaffold_24_28763699  NA            "0|1"         NA           
## HiC_scaffold_24_28763703  NA            "0|1"         NA           
## HiC_scaffold_25_4135969   "1/1"         "0/0"         NA           
## HiC_scaffold_25_4201677   "0/0"         NA            "0/0"        
## HiC_scaffold_25_5872831   "0/1"         "0/0"         "0/1"        
## HiC_scaffold_25_6879627   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_25_8172813   NA            "1/1"         "1/1"        
## HiC_scaffold_25_9969507   NA            NA            "1|1"        
## HiC_scaffold_25_10691336  "0/0"         "1/1"         NA           
## HiC_scaffold_25_21286462  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_26_4086662   "0/0"         "1/1"         NA           
## HiC_scaffold_26_7539671   "1|1"         "0/0"         NA           
## HiC_scaffold_26_8348511   "1/1"         "0/1"         "1/1"        
## HiC_scaffold_26_9043748   "0/0"         "0|1"         "1|1"        
## HiC_scaffold_26_9045655   "1|1"         "1|1"         "0/0"        
## HiC_scaffold_26_11253181  NA            "0/0"         "1|1"        
## HiC_scaffold_26_17828344  "1/1"         "0/1"         NA           
## HiC_scaffold_26_17932520  "0/1"         "1/1"         "1|1"        
## HiC_scaffold_26_17941459  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_26_17960877  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_26_18284041  NA            NA            NA           
## HiC_scaffold_26_18288701  "1|1"         NA            "1|1"        
## HiC_scaffold_26_18294422  "0/0"         NA            "1|1"        
## HiC_scaffold_26_21307365  "0/0"         NA            "1/1"        
## HiC_scaffold_26_22159924  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_26_22161535  "0/1"         "1/1"         "2|2"        
## HiC_scaffold_26_24794176  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_26_28538113  "1|1"         "0/0"         NA           
## HiC_scaffold_26_29031357  "1|1"         NA            "1/1"        
## HiC_scaffold_26_29163462  NA            NA            "0/0"        
## HiC_scaffold_26_42631018  "0/1"         NA            "1|1"        
## HiC_scaffold_26_42634814  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_26_43483190  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_26_49955889  "0/0"         NA            "1/1"        
## HiC_scaffold_26_58342510  "1/1"         "1|1"         NA           
## HiC_scaffold_27_1496120   "0/0"         NA            NA           
## HiC_scaffold_27_1947057   "0/0"         NA            NA           
## HiC_scaffold_27_2359058   "1|1"         NA            "0/0"        
## HiC_scaffold_27_2699645   "0/0"         "0/0"         NA           
## HiC_scaffold_27_4425475   NA            "0/0"         "0/0"        
## HiC_scaffold_27_7539469   "0/0"         "0/1"         "0/0"        
## HiC_scaffold_27_7777122   NA            "0/1"         NA           
## HiC_scaffold_27_16657070  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_27_24539255  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_27_34642359  "0/0"         "1|1"         NA           
## HiC_scaffold_27_34647277  NA            "0/0"         "0/0"        
## HiC_scaffold_27_35380535  NA            "1/1"         "1/1"        
## HiC_scaffold_27_35383230  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_28_21261390  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_28_24490442  NA            "0/0"         "0/0"        
## HiC_scaffold_28_25601927  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_28_31793968  "0/0"         NA            NA           
## HiC_scaffold_28_32126687  NA            "0/0"         NA           
## HiC_scaffold_28_34779518  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_28_36042491  "0|1"         "1/1"         "1/1"        
## HiC_scaffold_28_36692361  NA            NA            "1/1"        
## HiC_scaffold_28_38672993  NA            "0/0"         "1|1"        
## HiC_scaffold_28_39640526  NA            "0/0"         "0/0"        
## HiC_scaffold_28_40169242  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_28_41059640  "1|1"         NA            "0/0"        
## HiC_scaffold_28_42514830  "1/1"         "0/1"         "0/0"        
## HiC_scaffold_28_42601570  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_28_42601585  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_28_43018803  "1/1"         NA            "0/1"        
## HiC_scaffold_28_43036165  NA            "0/0"         "0/0"        
## HiC_scaffold_29_344317    NA            "0/0"         "0/0"        
## HiC_scaffold_29_3811176   "1/1"         "0/0"         "1/1"        
## HiC_scaffold_29_6073993   "0/0"         "1/1"         NA           
## HiC_scaffold_29_6415222   NA            "0/0"         "0/0"        
## HiC_scaffold_29_8224424   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_29_11153624  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_29_11153712  NA            "0/0"         "0/0"        
## HiC_scaffold_29_11167966  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_29_11491468  NA            "0/0"         NA           
## HiC_scaffold_29_12103558  "1|1"         "0/1"         "0/0"        
## HiC_scaffold_29_14279322  "0/0"         NA            "0/1"        
## HiC_scaffold_29_14913907  "0/0"         "0/0"         NA           
## HiC_scaffold_29_16378276  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_29_20635937  "0/0"         NA            NA           
## HiC_scaffold_29_20636787  NA            "0/0"         NA           
## HiC_scaffold_29_22560215  "0/1"         "0/1"         "1/1"        
## HiC_scaffold_29_22561144  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_29_24017849  "0/0"         "0/0"         NA           
## HiC_scaffold_29_31603590  "0/0"         "0/0"         NA           
## HiC_scaffold_3_21670751   "1/1"         NA            "1/1"        
## HiC_scaffold_3_24747014   NA            "1/1"         NA           
## HiC_scaffold_3_27861792   "0/0"         NA            "0/0"        
## HiC_scaffold_3_28057869   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_3_28441436   "1/1"         "1|1"         "0/0"        
## HiC_scaffold_3_28694380   NA            "1|1"         "0/0"        
## HiC_scaffold_3_31361023   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_3_31960572   NA            "0/0"         "0/0"        
## HiC_scaffold_3_32157169   "0/0"         "0/0"         "0/1"        
## HiC_scaffold_3_32159152   "1|1"         "1|1"         "0/1"        
## HiC_scaffold_3_34124237   NA            "0/0"         NA           
## HiC_scaffold_30_14199802  "0/0"         "1/1"         NA           
## HiC_scaffold_30_16052331  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_30_19914075  NA            "1/1"         "0/0"        
## HiC_scaffold_30_20688783  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_30_21446076  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_30_21598563  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_30_22155728  "0/0"         NA            "0/0"        
## HiC_scaffold_31_687411    "0/0"         "0/0"         NA           
## HiC_scaffold_31_3224722   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_31_3574854   "0/0"         "0/0"         NA           
## HiC_scaffold_31_5899551   NA            "1/1"         "0/0"        
## HiC_scaffold_31_5911491   "0|1"         "1|1"         "1|1"        
## HiC_scaffold_31_6297680   "0/0"         "0/1"         "0/0"        
## HiC_scaffold_31_12394016  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_31_12394040  "1|1"         "1|1"         NA           
## HiC_scaffold_31_18612650  "1/1"         "0/0"         NA           
## HiC_scaffold_32_4446859   "0/1"         "1/1"         NA           
## HiC_scaffold_32_5274796   "0/0"         "0/0"         "0/1"        
## HiC_scaffold_32_5275108   NA            NA            "0/0"        
## HiC_scaffold_32_5282358   "0/1"         "1/1"         "0/0"        
## HiC_scaffold_32_5450203   "1|1"         "1|1"         NA           
## HiC_scaffold_32_44200178  NA            "0/0"         NA           
## HiC_scaffold_33_638523    "1/1"         NA            "0/0"        
## HiC_scaffold_33_44489563  NA            "1/1"         NA           
## HiC_scaffold_33_44489988  NA            NA            "1/1"        
## HiC_scaffold_33_47080180  "0/0"         NA            "0/0"        
## HiC_scaffold_33_47495907  NA            "0/0"         "0/0"        
## HiC_scaffold_33_51865876  NA            NA            "0/0"        
## HiC_scaffold_34_1096982   "0/1"         NA            "1/1"        
## HiC_scaffold_34_6091943   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_34_6100160   "1|1"         NA            "1|1"        
## HiC_scaffold_34_24368584  "0/0"         NA            "0/0"        
## HiC_scaffold_35_3233120   "0/0"         "0/1"         "0/0"        
## HiC_scaffold_35_3253574   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_35_5512296   NA            "0/0"         "0/0"        
## HiC_scaffold_35_15114788  "1/1"         "0/0"         NA           
## HiC_scaffold_35_21214090  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_35_21462564  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_35_22746783  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_35_22747085  "1|1"         NA            "0/0"        
## HiC_scaffold_35_23059580  NA            NA            "0/0"        
## HiC_scaffold_35_23158882  NA            "0/0"         "0/1"        
## HiC_scaffold_35_23261143  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_35_24403602  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_35_24403620  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_35_24993986  NA            NA            "1/1"        
## HiC_scaffold_35_24993998  NA            "0/0"         "1|1"        
## HiC_scaffold_36_1538038   NA            "0/0"         "1/1"        
## HiC_scaffold_36_2464728   "1|1"         NA            "1/1"        
## HiC_scaffold_36_5489050   "0/0"         NA            "0/0"        
## HiC_scaffold_36_9673981   "0/1"         "0/1"         "0/0"        
## HiC_scaffold_36_9674127   NA            NA            NA           
## HiC_scaffold_36_9674756   "1/1"         NA            NA           
## HiC_scaffold_36_9676329   "0/1"         "1/1"         "1/1"        
## HiC_scaffold_36_12304516  NA            NA            "1/1"        
## HiC_scaffold_36_12515555  "0/0"         "1|1"         "0|1"        
## HiC_scaffold_36_13092647  NA            "1|1"         "0/0"        
## HiC_scaffold_36_13766994  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_36_14567741  "0/1"         "0/1"         "0/1"        
## HiC_scaffold_36_15530578  "1|1"         NA            "1|1"        
## HiC_scaffold_37_679894    NA            "0/0"         "0/0"        
## HiC_scaffold_37_916693    NA            "0/0"         "0/0"        
## HiC_scaffold_37_928146    NA            "0/0"         "0/0"        
## HiC_scaffold_37_1256768   "0/0"         "0/0"         "0|1"        
## HiC_scaffold_37_1270034   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_37_1770997   NA            "0|2"         NA           
## HiC_scaffold_37_1798298   "1/1"         "0/0"         "0/1"        
## HiC_scaffold_37_2010342   "0/0"         "0/0"         NA           
## HiC_scaffold_37_2141526   "0/0"         "0/0"         NA           
## HiC_scaffold_37_3952190   "0/0"         "0/0"         "0|1"        
## HiC_scaffold_37_3952215   "0/0"         "0/0"         "0|1"        
## HiC_scaffold_37_9915037   NA            "0/0"         NA           
## HiC_scaffold_38_5383430   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_38_5668363   "0/0"         NA            "0/0"        
## HiC_scaffold_38_5879849   NA            "0/1"         "0/0"        
## HiC_scaffold_38_5880155   "0/0"         "0/1"         "1/1"        
## HiC_scaffold_38_10612790  "1/1"         "0/0"         NA           
## HiC_scaffold_38_11940240  "2|2"         NA            "0/0"        
## HiC_scaffold_38_12878826  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_38_12959698  NA            "0/0"         "0/1"        
## HiC_scaffold_38_13087368  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_38_13480648  "1|1"         NA            "0/0"        
## HiC_scaffold_38_13965243  NA            "1/1"         "1/1"        
## HiC_scaffold_38_14089955  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_38_14408072  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_38_14931216  NA            "1/1"         "1/1"        
## HiC_scaffold_38_14978356  "1|1"         "0/0"         NA           
## HiC_scaffold_38_14978367  "1|1"         "0/0"         NA           
## HiC_scaffold_38_15292863  "1/1"         "0/0"         NA           
## HiC_scaffold_38_15306135  NA            "1|1"         "1|1"        
## HiC_scaffold_38_16077506  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_38_16138965  "0/1"         "0/1"         "1/1"        
## HiC_scaffold_38_16226040  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_39_1393769   "0/0"         "1|1"         "1|1"        
## HiC_scaffold_39_2014970   "1|1"         "1|1"         NA           
## HiC_scaffold_39_2014982   "1|1"         "1|1"         NA           
## HiC_scaffold_39_2014985   "1|1"         "1|1"         NA           
## HiC_scaffold_39_2426443   NA            "1/1"         "1/1"        
## HiC_scaffold_39_2485330   "1/1"         "0/0"         NA           
## HiC_scaffold_39_3350506   "0/0"         "1|1"         NA           
## HiC_scaffold_39_5897388   NA            NA            "0/0"        
## HiC_scaffold_39_17631133  NA            NA            NA           
## HiC_scaffold_4_12107187   "0/0"         "1/1"         "1/1"        
## HiC_scaffold_4_18241670   "1|1"         "0|1"         "0/0"        
## HiC_scaffold_4_18241723   "1/1"         "0|1"         "0/0"        
## HiC_scaffold_4_22418566   "0/0"         NA            "1|1"        
## HiC_scaffold_4_27899990   "0/0"         "0/1"         "1|1"        
## HiC_scaffold_4_35575118   "0/0"         "0/0"         NA           
## HiC_scaffold_4_38000967   NA            "1/1"         "1/1"        
## HiC_scaffold_4_50654021   "1|1"         "0|1"         NA           
## HiC_scaffold_40_2243415   "0/0"         NA            NA           
## HiC_scaffold_40_3000572   "1/1"         "0/1"         "0/0"        
## HiC_scaffold_40_3014177   "1|1"         "1/1"         "0|1"        
## HiC_scaffold_40_3027900   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_40_3143834   "0/0"         NA            "1/1"        
## HiC_scaffold_40_3843942   "0/0"         NA            "1|1"        
## HiC_scaffold_40_3847620   "0/0"         "0/0"         NA           
## HiC_scaffold_40_3891007   "0/0"         "1|1"         "1/1"        
## HiC_scaffold_40_3920667   "2/2"         "2/2"         "0/0"        
## HiC_scaffold_40_4177963   NA            NA            "1/1"        
## HiC_scaffold_40_4819107   NA            "0/0"         NA           
## HiC_scaffold_40_4819834   NA            "1|1"         NA           
## HiC_scaffold_40_5788271   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_40_5965269   "1|1"         "0/0"         "0/1"        
## HiC_scaffold_40_6204154   "0/0"         "1/1"         NA           
## HiC_scaffold_40_8387917   NA            "0/0"         "1/1"        
## HiC_scaffold_41_3235384   "2/2"         "0/0"         NA           
## HiC_scaffold_41_3583000   NA            NA            "1/1"        
## HiC_scaffold_41_5334504   "0/0"         "1|1"         NA           
## HiC_scaffold_41_5387631   "1|1"         "0/0"         "1|1"        
## HiC_scaffold_41_6423426   "0/0"         "0|1"         "0/1"        
## HiC_scaffold_41_14359947  "0/0"         "1/1"         NA           
## HiC_scaffold_41_24007593  "0/0"         NA            NA           
## HiC_scaffold_41_26225447  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_41_28626484  NA            "1/1"         "1/1"        
## HiC_scaffold_41_28660620  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_41_31007688  "0/1"         NA            NA           
## HiC_scaffold_42_1131084   "0/0"         "1/1"         "1/1"        
## HiC_scaffold_42_1818523   "0/1"         "0/0"         NA           
## HiC_scaffold_42_2165002   "0/2"         "0/0"         "0/0"        
## HiC_scaffold_42_2711332   NA            NA            NA           
## HiC_scaffold_42_6142699   "1/1"         "0/0"         NA           
## HiC_scaffold_42_6744976   "0/1"         "1/1"         "1/1"        
## HiC_scaffold_42_8066919   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_42_8068292   "0/0"         "0|1"         "0|1"        
## HiC_scaffold_42_12487888  "1/1"         "0|1"         "0/0"        
## HiC_scaffold_42_41366687  NA            "0/0"         "0/0"        
## HiC_scaffold_42_47313337  "0/0"         NA            "0/0"        
## HiC_scaffold_42_47313338  "0/0"         NA            "0/0"        
## HiC_scaffold_42_50784971  NA            "0/0"         "0/0"        
## HiC_scaffold_42_50784977  NA            "0/0"         "0/0"        
## HiC_scaffold_42_50784981  NA            "1/1"         "1/1"        
## HiC_scaffold_42_51916989  NA            "1/1"         "1/1"        
## HiC_scaffold_43_3842003   "1/1"         "1/1"         "0/1"        
## HiC_scaffold_43_14140861  "0/0"         NA            "0/0"        
## HiC_scaffold_43_15053605  NA            NA            NA           
## HiC_scaffold_43_17289945  NA            NA            NA           
## HiC_scaffold_43_29967704  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_43_35745831  "1|1"         "0|1"         "0|1"        
## HiC_scaffold_43_37627949  "0/1"         "0|1"         NA           
## HiC_scaffold_43_37628126  NA            "0/0"         "0/0"        
## HiC_scaffold_43_44017118  NA            "0/0"         "0/0"        
## HiC_scaffold_43_55124138  NA            "1|1"         "0/0"        
## HiC_scaffold_43_60107326  NA            "0/0"         NA           
## HiC_scaffold_43_61359386  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_43_61702593  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_43_61702606  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_43_61702721  "0/0"         NA            NA           
## HiC_scaffold_43_61702738  "0/0"         NA            "0/0"        
## HiC_scaffold_43_62511703  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_43_64069457  "0/0"         "0/0"         NA           
## HiC_scaffold_43_64577269  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_44_1920144   "1|1"         "0/0"         "1|1"        
## HiC_scaffold_44_2148035   "0/0"         "0/0"         "0/1"        
## HiC_scaffold_44_2568167   "0/0"         NA            "0/0"        
## HiC_scaffold_45_4180070   "1/1"         "0/1"         "1/1"        
## HiC_scaffold_45_4797754   "0/0"         "2/2"         "0/2"        
## HiC_scaffold_45_5911123   "0/0"         "0|1"         NA           
## HiC_scaffold_45_6958990   NA            "1/1"         NA           
## HiC_scaffold_45_8516216   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_45_10191213  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_45_12005885  "0/1"         NA            NA           
## HiC_scaffold_45_12006766  NA            "0/1"         "0/1"        
## HiC_scaffold_45_24736172  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_45_24739830  "0/0"         "0/0"         NA           
## HiC_scaffold_46_9691567   "0/0"         "0|1"         "0/0"        
## HiC_scaffold_46_17380257  "0/1"         NA            "1/1"        
## HiC_scaffold_46_18387147  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_46_37092355  NA            "0|1"         NA           
## HiC_scaffold_46_39183624  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_46_39390547  "1/1"         "1/1"         "0|1"        
## HiC_scaffold_46_42964941  "0/0"         NA            "0/0"        
## HiC_scaffold_46_42986653  "0/0"         NA            NA           
## HiC_scaffold_46_52074364  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_46_54255667  "1/1"         NA            "1/1"        
## HiC_scaffold_47_3750532   NA            "1/1"         "1/1"        
## HiC_scaffold_47_3751345   "1|1"         "1|1"         NA           
## HiC_scaffold_47_15400639  NA            "1|1"         "0/0"        
## HiC_scaffold_47_24072414  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_47_25273825  "0/0"         NA            "1|1"        
## HiC_scaffold_48_8752752   NA            "2|2"         "1/1"        
## HiC_scaffold_48_10765920  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_48_16077918  "1|1"         "1|1"         NA           
## HiC_scaffold_48_16077940  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_48_16411609  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_48_19972580  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_48_23493079  "0/0"         "1|1"         "0|1"        
## HiC_scaffold_48_23597210  "1|1"         "0/0"         NA           
## HiC_scaffold_48_24478493  NA            NA            "0/0"        
## HiC_scaffold_48_24881148  NA            "0/0"         "1/1"        
## HiC_scaffold_48_25865723  NA            "1/1"         "1/1"        
## HiC_scaffold_48_25984068  NA            NA            "1|1"        
## HiC_scaffold_48_25989079  "0/1"         NA            "1/1"        
## HiC_scaffold_48_30601375  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_48_31662115  "0/0"         "1/1"         NA           
## HiC_scaffold_48_41971562  "1/1"         "0/1"         "0/1"        
## HiC_scaffold_49_3392801   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_49_6101692   "1/1"         NA            "1/1"        
## HiC_scaffold_49_7996315   NA            "0/0"         NA           
## HiC_scaffold_49_9470474   "1/1"         "0/0"         "1/1"        
## HiC_scaffold_49_9886007   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_49_12592113  "0/0"         NA            "1/1"        
## HiC_scaffold_49_12741575  "0/0"         NA            "1/1"        
## HiC_scaffold_49_15135019  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_49_25906219  NA            "0/0"         "1|1"        
## HiC_scaffold_49_26614199  "0/0"         NA            "0/0"        
## HiC_scaffold_49_26655554  NA            "0|1"         "0/1"        
## HiC_scaffold_49_37568341  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_49_37568353  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_49_40002255  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_49_40003229  "0/1"         "1|1"         NA           
## HiC_scaffold_49_42966376  NA            "0/0"         "1|1"        
## HiC_scaffold_5_801252     "1/1"         "1/1"         "1/1"        
## HiC_scaffold_5_1446603    "0/0"         "1|1"         "0/0"        
## HiC_scaffold_5_1446611    "0/0"         "1|1"         "0/0"        
## HiC_scaffold_5_1530759    "1/1"         "1/1"         NA           
## HiC_scaffold_5_1539275    "0/0"         "0/0"         "0/0"        
## HiC_scaffold_5_1789576    "0/0"         NA            "1/1"        
## HiC_scaffold_5_1808197    "1/1"         "0/0"         "0/0"        
## HiC_scaffold_5_1808204    "0/0"         "1/1"         "1/1"        
## HiC_scaffold_5_1943895    "1|1"         "1|1"         NA           
## HiC_scaffold_5_1944469    NA            "1/1"         "1/1"        
## HiC_scaffold_5_2857283    NA            "1/1"         "1/1"        
## HiC_scaffold_5_4061378    "0/0"         "0/0"         "1/1"        
## HiC_scaffold_5_4340647    "0/0"         "0/0"         NA           
## HiC_scaffold_5_4435246    "1/1"         "0/0"         NA           
## HiC_scaffold_5_8868783    "0/0"         "0/0"         "1/1"        
## HiC_scaffold_50_4315969   NA            "1/1"         "0/0"        
## HiC_scaffold_50_11652296  "1/1"         "0/1"         NA           
## HiC_scaffold_50_11657309  NA            NA            "0/1"        
## HiC_scaffold_50_15521027  "0/0"         "0/0"         NA           
## HiC_scaffold_50_21050962  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_50_23686202  "1|1"         NA            "1|1"        
## HiC_scaffold_50_27393462  "1|1"         "0/0"         "0|1"        
## HiC_scaffold_50_42586883  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_50_45087211  "0/0"         NA            NA           
## HiC_scaffold_50_49796550  NA            "1/1"         "1/1"        
## HiC_scaffold_50_54383367  "1|1"         NA            "1|1"        
## HiC_scaffold_50_63318678  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_51_3521000   "1/1"         "0/0"         NA           
## HiC_scaffold_51_4681905   NA            NA            "0/1"        
## HiC_scaffold_51_6305599   NA            "0/0"         NA           
## HiC_scaffold_51_8530818   "0/0"         "1|1"         "0/0"        
## HiC_scaffold_51_11653312  "0/0"         "0|1"         "0/1"        
## HiC_scaffold_51_13138547  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_51_14457091  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_51_15512668  "0/0"         NA            "1/1"        
## HiC_scaffold_51_17816346  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_51_19997934  "1|1"         NA            "1|1"        
## HiC_scaffold_51_19997936  "1|1"         NA            "1|1"        
## HiC_scaffold_51_20870773  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_51_26660104  "1|1"         NA            "1|1"        
## HiC_scaffold_51_40727521  "1|1"         "1|1"         NA           
## HiC_scaffold_51_40892841  "1/1"         NA            "0/0"        
## HiC_scaffold_51_41717519  "1/1"         NA            "1/1"        
## HiC_scaffold_51_42547638  NA            "0/0"         "1/1"        
## HiC_scaffold_52_3335804   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_52_4149130   NA            "1/1"         "1/1"        
## HiC_scaffold_52_6893679   NA            "0/0"         NA           
## HiC_scaffold_52_13155416  NA            "1/1"         "0/0"        
## HiC_scaffold_52_13155437  NA            "1|1"         "0/0"        
## HiC_scaffold_52_13155442  NA            "1|1"         "0/0"        
## HiC_scaffold_52_14885688  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_52_14895078  "1/1"         "1/1"         NA           
## HiC_scaffold_52_15141791  "1/1"         NA            "1/1"        
## HiC_scaffold_52_15743051  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_52_15760201  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_52_15834589  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_52_15841769  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_52_15862421  "0/0"         "0/0"         NA           
## HiC_scaffold_52_15970970  "0/2"         NA            "0/0"        
## HiC_scaffold_52_16275237  NA            "0/0"         "0/0"        
## HiC_scaffold_52_16275240  "0/0"         "1|1"         NA           
## HiC_scaffold_52_16275290  "0/0"         NA            "1|1"        
## HiC_scaffold_52_16524164  "0/0"         NA            "0/0"        
## HiC_scaffold_52_16524572  NA            "1/1"         "1/1"        
## HiC_scaffold_52_16525647  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_52_16637047  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_52_17202127  NA            NA            "0/1"        
## HiC_scaffold_52_17207724  "1|1"         "1/1"         "1/1"        
## HiC_scaffold_52_17508820  "0/0"         NA            "0/0"        
## HiC_scaffold_52_17547593  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_52_17551239  NA            "1/1"         "1/1"        
## HiC_scaffold_52_17560696  "0/0"         "0|1"         "0/0"        
## HiC_scaffold_52_17560699  "0/0"         "0|1"         "0/0"        
## HiC_scaffold_52_17741250  NA            "1/1"         "1/1"        
## HiC_scaffold_52_17742260  "0/0"         "0|1"         "0/0"        
## HiC_scaffold_52_18340578  "0/0"         NA            "0/0"        
## HiC_scaffold_52_18415911  "0/0"         NA            "1/1"        
## HiC_scaffold_52_22189517  "1/1"         "0/1"         NA           
## HiC_scaffold_52_22526592  "0/0"         "0/0"         NA           
## HiC_scaffold_52_26393471  "0/0"         "0/0"         NA           
## HiC_scaffold_52_26799380  NA            "0/0"         "1/1"        
## HiC_scaffold_52_31871931  "0/1"         "1|1"         "1/1"        
## HiC_scaffold_52_31874283  NA            "1/1"         "0|1"        
## HiC_scaffold_52_31874287  NA            "0/0"         "0|1"        
## HiC_scaffold_52_32161053  "1|1"         "0|1"         "1|1"        
## HiC_scaffold_52_33165557  "0/0"         "0/1"         NA           
## HiC_scaffold_52_33897620  NA            "0/0"         "1/1"        
## HiC_scaffold_52_34763156  NA            "1|1"         "0/0"        
## HiC_scaffold_52_34763171  NA            "0/1"         "0/0"        
## HiC_scaffold_52_35174755  "0/0"         "1|1"         NA           
## HiC_scaffold_52_35608453  NA            NA            "1/1"        
## HiC_scaffold_52_35608470  NA            NA            "1|1"        
## HiC_scaffold_52_39464728  NA            "1|1"         "0|1"        
## HiC_scaffold_52_42141354  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_52_44675725  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_52_49935920  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_53_21789524  NA            "0/0"         NA           
## HiC_scaffold_53_25168042  "0/0"         NA            "1/1"        
## HiC_scaffold_53_26398989  NA            "0|1"         "1|1"        
## HiC_scaffold_53_26398992  NA            "0|1"         "1|1"        
## HiC_scaffold_53_26398994  NA            "0|1"         "1|1"        
## HiC_scaffold_53_26549665  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_53_29227676  NA            NA            "0|1"        
## HiC_scaffold_53_31250349  "1|1"         "1|1"         "1/1"        
## HiC_scaffold_54_530581    NA            "1|1"         "1|1"        
## HiC_scaffold_54_794095    "1|1"         "1|1"         "1|1"        
## HiC_scaffold_54_1171109   "0/0"         "0/0"         NA           
## HiC_scaffold_54_1378956   NA            "0/1"         "0/0"        
## HiC_scaffold_54_1380539   "1/1"         "0/1"         "1/1"        
## HiC_scaffold_54_3045015   NA            "1/1"         NA           
## HiC_scaffold_54_3185987   "1/1"         "1/1"         "0/0"        
## HiC_scaffold_54_4401098   "0/1"         "0/0"         NA           
## HiC_scaffold_54_5595903   "1|1"         "0/0"         NA           
## HiC_scaffold_54_5595921   "1|1"         "1|1"         "0/0"        
## HiC_scaffold_54_5595928   "1|1"         "1|1"         "0/0"        
## HiC_scaffold_54_5595949   "1/1"         "1/1"         "0/0"        
## HiC_scaffold_54_6649662   "0/0"         NA            "0/0"        
## HiC_scaffold_54_8036734   "1|1"         NA            "1|1"        
## HiC_scaffold_54_9206614   NA            "1/1"         "1/1"        
## HiC_scaffold_54_35913192  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_54_35913282  NA            NA            "0|1"        
## HiC_scaffold_54_35913283  NA            NA            "0|1"        
## HiC_scaffold_55_1260491   NA            "1/1"         NA           
## HiC_scaffold_55_3254027   "0/0"         "0/1"         NA           
## HiC_scaffold_55_3281985   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_55_5409544   "1/1"         NA            "1/1"        
## HiC_scaffold_55_5411094   "1|1"         NA            "1|1"        
## HiC_scaffold_55_5411115   "1/1"         NA            "1|1"        
## HiC_scaffold_55_18121799  "1/1"         NA            "1/1"        
## HiC_scaffold_55_19605809  "1|1"         "0/1"         NA           
## HiC_scaffold_55_19605817  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_55_19605821  "1|1"         "1|1"         NA           
## HiC_scaffold_55_20195204  NA            "1/1"         NA           
## HiC_scaffold_55_20886967  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_55_23222937  "0/1"         "0/0"         NA           
## HiC_scaffold_55_23626331  "0/0"         "0/0"         NA           
## HiC_scaffold_55_24539590  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_55_24585939  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_55_34174151  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_56_17874332  NA            "0/0"         "0/0"        
## HiC_scaffold_56_18635259  "0/0"         NA            NA           
## HiC_scaffold_56_23654344  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_56_35850533  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_56_35850539  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_56_40813556  "1/1"         "0/0"         NA           
## HiC_scaffold_56_53211633  "0/0"         NA            "0/0"        
## HiC_scaffold_56_60070829  "0/0"         NA            "0/0"        
## HiC_scaffold_56_73286017  NA            NA            "1/1"        
## HiC_scaffold_56_73829442  "0/0"         "0/0"         NA           
## HiC_scaffold_56_73829443  "0/0"         "0/0"         NA           
## HiC_scaffold_56_76060304  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_57_25306408  "1/1"         NA            "0/0"        
## HiC_scaffold_57_29222385  "1/1"         "0/1"         "0|0"        
## HiC_scaffold_57_29592432  "1/1"         "0/0"         NA           
## HiC_scaffold_57_31472698  "1|1"         NA            "0/0"        
## HiC_scaffold_57_32371742  "0/0"         NA            "0/0"        
## HiC_scaffold_57_36495072  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_57_37286264  NA            "0/0"         "0/0"        
## HiC_scaffold_57_38537415  NA            "0/1"         "1|1"        
## HiC_scaffold_57_45438854  "1|1"         "1/2"         "1|1"        
## HiC_scaffold_57_52856874  "0/1"         NA            "1/1"        
## HiC_scaffold_57_53575355  "0/1"         "0/1"         "0/0"        
## HiC_scaffold_57_55856783  "1/1"         NA            "1/1"        
## HiC_scaffold_58_1362614   "1/1"         "0/0"         "1/1"        
## HiC_scaffold_58_1432845   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_58_1541720   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_58_2777120   "1/1"         "1/1"         "0/1"        
## HiC_scaffold_58_2973169   NA            "1/1"         "1/1"        
## HiC_scaffold_58_3243043   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_58_4035282   "0/0"         "0/0"         NA           
## HiC_scaffold_58_5442157   "0/0"         "0/1"         "0/0"        
## HiC_scaffold_58_8004631   "0/0"         "0/1"         "0/0"        
## HiC_scaffold_58_8058998   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_58_8932837   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_58_14814944  NA            "0/0"         "0/0"        
## HiC_scaffold_58_15639988  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_58_15707198  NA            NA            "0/1"        
## HiC_scaffold_58_15707258  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_58_15710623  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_58_19155063  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_58_20224050  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_58_38475355  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_59_3979055   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_59_5071810   "0/1"         NA            NA           
## HiC_scaffold_59_5349936   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_59_5350114   NA            NA            "0/0"        
## HiC_scaffold_59_7738302   "1/1"         "0/0"         NA           
## HiC_scaffold_59_7738351   "1/1"         "0/0"         "1/1"        
## HiC_scaffold_59_7958561   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_59_9273798   "1/1"         "1|1"         "0/0"        
## HiC_scaffold_59_50928099  NA            "0/0"         "0/0"        
## HiC_scaffold_59_52960060  "0/0"         NA            "0/0"        
## HiC_scaffold_6_10569023   NA            "1/1"         "0/0"        
## HiC_scaffold_6_10711445   NA            NA            "0/0"        
## HiC_scaffold_6_13209200   "1|1"         "0/0"         "1|1"        
## HiC_scaffold_6_13213107   "0/0"         "1/1"         "1/1"        
## HiC_scaffold_6_13311684   NA            "0/0"         "0/0"        
## HiC_scaffold_6_15670783   NA            "1|1"         "1|1"        
## HiC_scaffold_6_19111232   "0/0"         "0/0"         NA           
## HiC_scaffold_6_32805498   "1/1"         NA            "0/0"        
## HiC_scaffold_6_38793174   "0/0"         "0/0"         NA           
## HiC_scaffold_6_41092101   "0/0"         "0/1"         "1|1"        
## HiC_scaffold_6_41342933   "0/0"         "1/1"         "0/1"        
## HiC_scaffold_6_47594508   NA            "0/0"         "0/0"        
## HiC_scaffold_60_70878     "1|1"         NA            "1|1"        
## HiC_scaffold_60_99549     "1|1"         NA            NA           
## HiC_scaffold_60_201823    NA            NA            "1/1"        
## HiC_scaffold_60_712969    "1|1"         "1|1"         "1|1"        
## HiC_scaffold_60_744783    "1/1"         "1|1"         "0/0"        
## HiC_scaffold_60_744788    "0/0"         "0/0"         "1/1"        
## HiC_scaffold_60_22142128  "0/0"         "0/0"         NA           
## HiC_scaffold_60_27599770  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_60_30608878  NA            "0/0"         "0/0"        
## HiC_scaffold_60_32657324  "0/0"         NA            "1/1"        
## HiC_scaffold_60_32672580  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_60_38856893  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_60_39028335  NA            "1/1"         NA           
## HiC_scaffold_60_40296869  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_60_42775723  "1/1"         "0/0"         "1|1"        
## HiC_scaffold_60_44687906  NA            "0/0"         "0/0"        
## HiC_scaffold_60_44804601  NA            "1/1"         "0/1"        
## HiC_scaffold_60_53696867  NA            "0/0"         "0/0"        
## HiC_scaffold_60_53696868  NA            "0/0"         "0/0"        
## HiC_scaffold_60_60651515  "0|1"         "0/0"         "0/0"        
## HiC_scaffold_60_70678462  "0|0"         "1/1"         "1/1"        
## HiC_scaffold_61_2205328   NA            NA            "0/0"        
## HiC_scaffold_61_2491706   NA            "1/1"         "1|1"        
## HiC_scaffold_61_4009916   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_61_4062917   NA            "0/0"         "0/0"        
## HiC_scaffold_61_4122763   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_61_4216461   "0/0"         "1/1"         "1/1"        
## HiC_scaffold_61_4325053   "1/1"         NA            "0/0"        
## HiC_scaffold_61_9004838   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_61_14635083  NA            NA            "0/0"        
## HiC_scaffold_62_1128608   NA            "1/1"         "1/1"        
## HiC_scaffold_62_11335200  "2|2"         "0|1"         NA           
## HiC_scaffold_62_18828476  "0/0"         NA            NA           
## HiC_scaffold_62_21548870  NA            NA            NA           
## HiC_scaffold_62_23103274  NA            NA            NA           
## HiC_scaffold_62_25793456  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_62_25887474  "0/0"         "1/1"         NA           
## HiC_scaffold_62_28516096  "1|1"         "1|1"         "0|1"        
## HiC_scaffold_62_28516099  "1|1"         "1|1"         "0|1"        
## HiC_scaffold_62_28818725  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_62_28818729  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_62_45207353  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_63_3092269   NA            "1/1"         NA           
## HiC_scaffold_63_3977940   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_63_4084937   "0/0"         NA            "1/1"        
## HiC_scaffold_63_4196326   "0/1"         "0/0"         NA           
## HiC_scaffold_63_6262453   NA            NA            "0/0"        
## HiC_scaffold_63_6350204   "1/1"         "1/1"         "0/0"        
## HiC_scaffold_63_6458794   "0/0"         NA            "0/0"        
## HiC_scaffold_64_9162978   "0/0"         "0/0"         "2/2"        
## HiC_scaffold_64_16876561  "0/1"         "0|1"         "0/0"        
## HiC_scaffold_64_17543009  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_64_18925356  NA            NA            NA           
## HiC_scaffold_64_19133050  "1|1"         NA            "0/0"        
## HiC_scaffold_64_19627769  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_64_20477250  "0/0"         NA            "0/0"        
## HiC_scaffold_64_22816677  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_64_22954654  "0/0"         "0|1"         "1|1"        
## HiC_scaffold_64_22954658  "0/0"         "0|1"         "1|1"        
## HiC_scaffold_64_22954682  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_65_6829971   NA            "0/0"         "1/1"        
## HiC_scaffold_65_8071102   "1|1"         "0/0"         NA           
## HiC_scaffold_65_9023979   NA            "0/0"         "0/1"        
## HiC_scaffold_65_9839671   "0/0"         NA            "0/0"        
## HiC_scaffold_65_10404778  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_65_11327791  NA            NA            "1/1"        
## HiC_scaffold_65_11332104  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_65_34823822  NA            "0/0"         "0/0"        
## HiC_scaffold_65_51418017  NA            NA            "1/1"        
## HiC_scaffold_65_54053979  NA            "0/1"         "0/0"        
## HiC_scaffold_65_57110875  "1|1"         "0/0"         NA           
## HiC_scaffold_66_15615363  "1|1"         NA            "0/0"        
## HiC_scaffold_66_15672090  "0/0"         NA            "1/1"        
## HiC_scaffold_66_17903445  "0/0"         "0/0"         "0|1"        
## HiC_scaffold_66_18298629  NA            NA            NA           
## HiC_scaffold_66_19730676  "1|1"         "0/1"         NA           
## HiC_scaffold_66_23688768  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_66_26614535  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_66_27445665  "1/1"         "1/1"         NA           
## HiC_scaffold_66_29457165  NA            "0|1"         "1|1"        
## HiC_scaffold_66_29457180  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_66_30116287  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_66_31603503  "0/0"         NA            "0/0"        
## HiC_scaffold_66_33261460  NA            "1|1"         NA           
## HiC_scaffold_66_34138981  "0/0"         "0/0"         NA           
## HiC_scaffold_66_34139020  NA            "1/1"         NA           
## HiC_scaffold_66_34142862  "1/1"         NA            "1/1"        
## HiC_scaffold_67_1404390   "0/0"         "1/1"         NA           
## HiC_scaffold_67_28493665  "0/0"         "0/0"         NA           
## HiC_scaffold_67_30243885  NA            "0/0"         "0/0"        
## HiC_scaffold_67_31511806  "0/0"         NA            "0/0"        
## HiC_scaffold_67_34638092  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_67_37534720  "1/1"         NA            "1|1"        
## HiC_scaffold_67_39679546  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_67_39854918  "0|1"         "1/1"         "0/0"        
## HiC_scaffold_67_39860738  NA            "1/1"         "0/0"        
## HiC_scaffold_67_40331656  "1/1"         NA            "0/0"        
## HiC_scaffold_67_40824747  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_68_3438132   NA            NA            "1|1"        
## HiC_scaffold_68_3438133   NA            NA            "1|1"        
## HiC_scaffold_68_11206902  "0/0"         NA            "0/1"        
## HiC_scaffold_68_32770607  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_68_34016823  "0/0"         NA            NA           
## HiC_scaffold_68_34020019  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_68_40296057  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_68_40296059  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_68_65001879  NA            NA            NA           
## HiC_scaffold_69_23311147  "1|1"         "2|2"         "0/0"        
## HiC_scaffold_69_27351303  NA            "0/0"         "0/0"        
## HiC_scaffold_69_29437208  NA            "1|1"         NA           
## HiC_scaffold_69_33699381  "1|1"         NA            "1|1"        
## HiC_scaffold_69_40194698  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_69_48273575  NA            "1/1"         "0/0"        
## HiC_scaffold_69_48348026  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_69_48348034  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_69_49563252  "0/0"         "1|1"         "0/1"        
## HiC_scaffold_69_49593952  NA            NA            "0/0"        
## HiC_scaffold_69_49859037  "0/0"         NA            NA           
## HiC_scaffold_69_51271238  "1/1"         NA            "0/0"        
## HiC_scaffold_69_51529836  "1/1"         NA            NA           
## HiC_scaffold_69_57313650  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_69_57359194  NA            "0/0"         NA           
## HiC_scaffold_6951_523650  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_6951_897126  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_6951_1134482 "0/1"         "1|1"         NA           
## HiC_scaffold_6951_2484960 NA            "0/0"         "0/1"        
## HiC_scaffold_6951_3301273 "0/0"         "0/0"         "0/0"        
## HiC_scaffold_6951_3314609 NA            NA            "0/1"        
## HiC_scaffold_6951_3945993 NA            "1|1"         NA           
## HiC_scaffold_6958_218293  "0/0"         "0/0"         NA           
## HiC_scaffold_6958_449143  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_7_351023     "0/0"         "0/0"         "0/0"        
## HiC_scaffold_7_488024     "0/0"         "0/0"         "0|1"        
## HiC_scaffold_7_492663     "0/0"         "1/1"         "1/1"        
## HiC_scaffold_7_693567     "0/0"         "1|1"         "1|1"        
## HiC_scaffold_7_2379128    "0/0"         "0/0"         NA           
## HiC_scaffold_7_3087721    "0/0"         NA            "0/0"        
## HiC_scaffold_7_3394880    NA            "0/0"         "0/1"        
## HiC_scaffold_7_22247106   NA            NA            "0/0"        
## HiC_scaffold_70_4632611   "0/0"         NA            "1|1"        
## HiC_scaffold_70_14042778  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_71_410844    NA            "0/0"         "0/0"        
## HiC_scaffold_71_1753451   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_71_2283682   "0/0"         NA            "0|1"        
## HiC_scaffold_71_3439685   NA            "0/0"         "0|2"        
## HiC_scaffold_71_17850462  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_71_20588314  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_71_25465351  "1|1"         "0|1"         "0/0"        
## HiC_scaffold_71_25465352  "1|1"         "0|1"         "0/0"        
## HiC_scaffold_71_26356062  NA            "1/1"         "0/0"        
## HiC_scaffold_72_11785096  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_72_17285854  NA            NA            "1/1"        
## HiC_scaffold_72_23704999  NA            "0/0"         NA           
## HiC_scaffold_72_24465318  "0/0"         "0/1"         NA           
## HiC_scaffold_72_30457277  NA            "0/0"         "0/1"        
## HiC_scaffold_72_32068649  NA            "0/0"         NA           
## HiC_scaffold_72_35058295  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_72_36024997  "1|1"         NA            NA           
## HiC_scaffold_72_37135067  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_72_38410141  "1|1"         NA            "0/0"        
## HiC_scaffold_72_38448056  "1|1"         NA            NA           
## HiC_scaffold_72_41412511  "1/1"         NA            NA           
## HiC_scaffold_73_2192629   "1|1"         NA            "1|1"        
## HiC_scaffold_73_2920208   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_73_4522493   "1/1"         NA            "1/1"        
## HiC_scaffold_73_4748625   NA            "0/0"         "1/1"        
## HiC_scaffold_73_5839336   "1/1"         "1/1"         NA           
## HiC_scaffold_73_9338582   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_73_27393859  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_74_14235619  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_74_14515598  "1|1"         "1/1"         NA           
## HiC_scaffold_74_15116121  "0/0"         "0/0"         "0|1"        
## HiC_scaffold_74_17233613  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_74_17725340  "0/0"         NA            NA           
## HiC_scaffold_74_18418135  NA            "0/0"         "0/0"        
## HiC_scaffold_74_18418138  NA            "0/0"         "0/0"        
## HiC_scaffold_74_21254425  NA            NA            "1/1"        
## HiC_scaffold_74_22261065  NA            "1/1"         "1/1"        
## HiC_scaffold_74_47132519  "0|1"         "1|1"         "0/0"        
## HiC_scaffold_74_50979096  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_74_51060549  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_74_53256803  NA            NA            "0/0"        
## HiC_scaffold_74_55464169  "0/0"         NA            "1/1"        
## HiC_scaffold_74_55515512  NA            "0/0"         NA           
## HiC_scaffold_74_55999260  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_74_57404902  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_74_58181927  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_74_58198600  NA            "0/0"         NA           
## HiC_scaffold_74_63060195  "0/0"         NA            NA           
## HiC_scaffold_75_5345466   NA            "1|1"         "1|1"        
## HiC_scaffold_75_5346522   "0/0"         "0/0"         NA           
## HiC_scaffold_75_5346535   "0/0"         "0/0"         NA           
## HiC_scaffold_75_9850973   NA            "1/1"         "1/1"        
## HiC_scaffold_76_27149820  NA            "0|1"         "0/0"        
## HiC_scaffold_76_31582908  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_76_31792815  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_76_35352820  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_76_57782171  NA            "1/1"         NA           
## HiC_scaffold_76_59862401  "1|1"         NA            NA           
## HiC_scaffold_76_61095594  "0/0"         NA            NA           
## HiC_scaffold_76_65496128  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_76_68965847  NA            "0/0"         "1/1"        
## HiC_scaffold_76_68966411  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_76_69823482  "0/0"         "1|1"         NA           
## HiC_scaffold_76_73343841  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_77_3598274   "0/0"         NA            "1/1"        
## HiC_scaffold_77_6982137   "0/1"         "1/1"         "1/1"        
## HiC_scaffold_77_11021994  "1/1"         "1/1"         NA           
## HiC_scaffold_77_13608165  "0/0"         NA            "0/0"        
## HiC_scaffold_77_16888594  "0/0"         "0|1"         "0/0"        
## HiC_scaffold_77_16888623  "1|1"         "0/1"         "0|1"        
## HiC_scaffold_77_16889448  "0/1"         "0/1"         NA           
## HiC_scaffold_77_39784685  "1|1"         "0/0"         NA           
## HiC_scaffold_77_44375866  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_77_45385370  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_78_5719919   "1/1"         "1/1"         "0/0"        
## HiC_scaffold_78_11353297  NA            NA            "0/0"        
## HiC_scaffold_78_27316392  NA            "1/1"         "0/0"        
## HiC_scaffold_78_48124809  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_78_48124826  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_78_48126176  "0/0"         NA            "0/0"        
## HiC_scaffold_78_48279096  "1/1"         "1/1"         NA           
## HiC_scaffold_78_48434558  NA            "0/1"         NA           
## HiC_scaffold_78_49759181  "1|1"         NA            "0/1"        
## HiC_scaffold_78_49759192  "0/0"         NA            "0/0"        
## HiC_scaffold_78_49759215  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_78_51364025  NA            "1/1"         "1/1"        
## HiC_scaffold_78_55395445  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_78_59610866  "0/0"         NA            "1/1"        
## HiC_scaffold_78_62136661  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_79_1643780   NA            "0/0"         "0/0"        
## HiC_scaffold_79_2519178   NA            "1/1"         "1/1"        
## HiC_scaffold_79_2858100   NA            "1/1"         NA           
## HiC_scaffold_79_3922454   NA            "0/0"         "0/0"        
## HiC_scaffold_79_4127878   "1|1"         NA            "1|1"        
## HiC_scaffold_79_4543693   "0/1"         "0/1"         "1/1"        
## HiC_scaffold_79_11507678  "0/0"         "0/1"         NA           
## HiC_scaffold_79_12618812  "1|1"         NA            NA           
## HiC_scaffold_79_14185404  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_79_17120237  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_79_17120254  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_79_35551507  NA            "0/0"         "0/0"        
## HiC_scaffold_79_35551543  NA            "0/0"         "0/0"        
## HiC_scaffold_79_38927423  NA            NA            NA           
## HiC_scaffold_79_42623307  NA            "1|1"         "1|1"        
## HiC_scaffold_79_43179786  "0/0"         NA            NA           
## HiC_scaffold_79_43180099  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_79_43828078  NA            "0/0"         "1|1"        
## HiC_scaffold_79_43872513  "1/1"         NA            "1/1"        
## HiC_scaffold_79_44627215  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_79_50772769  NA            "0|1"         "0|1"        
## HiC_scaffold_79_55468575  NA            "0/0"         "1/1"        
## HiC_scaffold_79_55816114  "0/0"         NA            "0/0"        
## HiC_scaffold_79_59915784  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_79_60165298  "0/0"         "1/1"         NA           
## HiC_scaffold_79_60165305  NA            "0/0"         "0/0"        
## HiC_scaffold_79_69145556  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_79_70208305  "0/0"         NA            "1|1"        
## HiC_scaffold_79_73412292  "0/0"         NA            NA           
## HiC_scaffold_79_73416663  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_79_73416688  "0/0"         "1|1"         NA           
## HiC_scaffold_79_76863102  "0/0"         "0/1"         NA           
## HiC_scaffold_79_81279649  "0/0"         NA            "0/0"        
## HiC_scaffold_79_81499990  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_79_82319836  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_79_82319849  "1|1"         "1|1"         NA           
## HiC_scaffold_79_83163707  NA            NA            "0/0"        
## HiC_scaffold_79_86283512  "0/0"         "1/1"         NA           
## HiC_scaffold_79_87123758  NA            NA            "1|1"        
## HiC_scaffold_79_88362889  NA            "0/1"         "0/1"        
## HiC_scaffold_79_88599431  NA            NA            "1/1"        
## HiC_scaffold_79_89322919  "0/0"         NA            "0/0"        
## HiC_scaffold_79_89331918  "0/0"         "0/0"         NA           
## HiC_scaffold_79_91340958  "0/0"         "1|1"         NA           
## HiC_scaffold_8_13649836   "1/1"         "1/1"         NA           
## HiC_scaffold_8_13650752   NA            "0/0"         NA           
## HiC_scaffold_8_23818233   "0/1"         "1/1"         "0/0"        
## HiC_scaffold_8_24123972   "1|1"         NA            NA           
## HiC_scaffold_8_24230791   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_8_24588423   NA            NA            "2|2"        
## HiC_scaffold_8_25348483   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_8_25421933   "0/0"         NA            "0/0"        
## HiC_scaffold_8_25772942   "0/0"         "1/1"         "1/1"        
## HiC_scaffold_8_26289589   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_8_27602740   "0/0"         "0|1"         NA           
## HiC_scaffold_8_28159063   "1/1"         "1/1"         NA           
## HiC_scaffold_8_30829320   "0/0"         "0/1"         "1|1"        
## HiC_scaffold_8_31044084   NA            "0/0"         "0/0"        
## HiC_scaffold_8_31415507   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_8_32594682   "1|1"         "1|1"         "0/0"        
## HiC_scaffold_80_3617847   "1/1"         "0/0"         "1/1"        
## HiC_scaffold_80_5758183   NA            "1|1"         "0/0"        
## HiC_scaffold_80_6760006   "1|1"         "0/0"         NA           
## HiC_scaffold_80_6760037   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_80_7772622   "1/1"         "1/1"         NA           
## HiC_scaffold_80_7919533   "0/1"         "0/0"         "1/1"        
## HiC_scaffold_80_8110052   "1|1"         "1|1"         "0/0"        
## HiC_scaffold_80_8193366   NA            "1/1"         "1/1"        
## HiC_scaffold_80_8625784   "1/1"         NA            "1/1"        
## HiC_scaffold_80_8912846   "1/1"         NA            "0/1"        
## HiC_scaffold_80_9544102   NA            "1/1"         "0|1"        
## HiC_scaffold_80_10770701  "0/0"         "1/1"         NA           
## HiC_scaffold_80_11590146  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_80_16953653  NA            "0/0"         "0/1"        
## HiC_scaffold_80_18938832  "1|1"         NA            "1|1"        
## HiC_scaffold_80_19015946  NA            "1/1"         "1/1"        
## HiC_scaffold_80_19404001  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_80_25346708  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_80_37479851  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_80_37507516  "0/0"         "1/1"         NA           
## HiC_scaffold_81_1187192   "0/0"         "0/0"         NA           
## HiC_scaffold_81_2689826   "0|1"         NA            "1|1"        
## HiC_scaffold_81_2690751   "0/0"         "1|1"         "1|1"        
## HiC_scaffold_81_6614123   "1/1"         "1/1"         "0/1"        
## HiC_scaffold_81_7836855   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_81_10334868  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_81_10458752  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_81_17515538  "1|1"         "1/1"         "1/1"        
## HiC_scaffold_81_40271282  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_81_40271294  NA            "1/1"         NA           
## HiC_scaffold_81_41096427  NA            "0/0"         "1|1"        
## HiC_scaffold_81_41096444  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_81_43820595  NA            "1/1"         "1|1"        
## HiC_scaffold_81_43820732  "0/1"         NA            "1|1"        
## HiC_scaffold_81_43854278  "0/0"         "0/1"         NA           
## HiC_scaffold_81_44804862  "0/0"         "0/0"         NA           
## HiC_scaffold_81_45063428  "1|1"         NA            "1|1"        
## HiC_scaffold_81_45950590  "0/0"         NA            "1|1"        
## HiC_scaffold_81_46714752  "1|1"         "1|1"         NA           
## HiC_scaffold_81_46714759  "1|1"         "1|1"         NA           
## HiC_scaffold_81_47170397  NA            NA            "1|1"        
## HiC_scaffold_81_47628201  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_81_48105216  "1|1"         "1|1"         "0/1"        
## HiC_scaffold_81_48932070  "1/1"         NA            "0/0"        
## HiC_scaffold_81_54050146  NA            NA            "1/1"        
## HiC_scaffold_82_5672063   NA            "0/0"         "0/0"        
## HiC_scaffold_82_8796823   "0|1"         NA            "0/0"        
## HiC_scaffold_82_13450959  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_82_26144442  NA            "1/1"         "1/1"        
## HiC_scaffold_82_26147011  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_82_28907834  NA            "0/0"         NA           
## HiC_scaffold_82_34413793  "0/0"         NA            "0/0"        
## HiC_scaffold_82_34413800  "1/1"         NA            NA           
## HiC_scaffold_82_36173035  NA            "0/1"         NA           
## HiC_scaffold_82_40539273  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_82_41470256  "1/1"         "0/1"         NA           
## HiC_scaffold_83_23993605  "0/1"         NA            "0/0"        
## HiC_scaffold_83_35035961  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_83_43423618  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_83_46920654  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_83_46934197  "1/1"         "1|1"         "0|1"        
## HiC_scaffold_84_356301    "1/1"         "0/0"         NA           
## HiC_scaffold_84_5761817   NA            "0/1"         "0/0"        
## HiC_scaffold_84_5769022   NA            "0/0"         "1|1"        
## HiC_scaffold_84_6288130   "0/0"         "0/0"         NA           
## HiC_scaffold_84_6288141   "1|1"         NA            NA           
## HiC_scaffold_84_6288147   "1|1"         NA            NA           
## HiC_scaffold_84_7069238   NA            "1|1"         "1|1"        
## HiC_scaffold_84_9131309   NA            "1/1"         "0/0"        
## HiC_scaffold_84_10148442  "0/0"         NA            "0/0"        
## HiC_scaffold_84_14659391  "1/1"         NA            "1/1"        
## HiC_scaffold_84_16302752  "0/1"         "0/1"         "2|2"        
## HiC_scaffold_84_18463244  NA            "0/1"         "0/0"        
## HiC_scaffold_84_22909575  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_84_29275266  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_84_31184610  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_84_33093169  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_84_37675180  NA            NA            "0/0"        
## HiC_scaffold_84_39501814  NA            NA            "0/1"        
## HiC_scaffold_84_50169438  "0/0"         "0/0"         NA           
## HiC_scaffold_84_50169445  "0/0"         "0/0"         NA           
## HiC_scaffold_84_51231025  NA            "0/0"         NA           
## HiC_scaffold_85_9792207   "0|1"         "0/0"         "0/0"        
## HiC_scaffold_85_11784233  NA            "0/1"         NA           
## HiC_scaffold_85_11911022  "1|1"         "0/0"         NA           
## HiC_scaffold_85_11911142  "0/1"         NA            NA           
## HiC_scaffold_85_11913828  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_85_11913831  NA            "1/1"         "0/0"        
## HiC_scaffold_85_12353081  NA            "1/1"         "0/1"        
## HiC_scaffold_85_12414551  "0/0"         NA            "2/2"        
## HiC_scaffold_85_13043967  NA            "0/0"         "0/0"        
## HiC_scaffold_85_13221888  "1/1"         NA            NA           
## HiC_scaffold_85_27008863  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_85_28992264  NA            "0/0"         "1|1"        
## HiC_scaffold_85_28992268  NA            "1|1"         "1|1"        
## HiC_scaffold_85_64310850  "1|1"         "1|1"         NA           
## HiC_scaffold_85_65135112  NA            NA            "0/0"        
## HiC_scaffold_85_65563529  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_86_1949664   "1|1"         "1|1"         "0/0"        
## HiC_scaffold_86_5340423   "0/1"         "1/1"         NA           
## HiC_scaffold_86_5483991   "0/0"         "1|1"         NA           
## HiC_scaffold_86_8928469   "1/1"         NA            NA           
## HiC_scaffold_86_23727924  NA            NA            "1|1"        
## HiC_scaffold_86_24825818  NA            NA            NA           
## HiC_scaffold_86_25333718  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_86_29668168  "0/0"         NA            "0/2"        
## HiC_scaffold_86_30914243  NA            "1|1"         NA           
## HiC_scaffold_86_32040320  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_86_32040329  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_86_32125061  "0/1"         "1/1"         NA           
## HiC_scaffold_86_32144758  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_86_32153692  "1/1"         "1/1"         NA           
## HiC_scaffold_86_32534129  "1/1"         NA            "1/1"        
## HiC_scaffold_86_32605768  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_86_36355399  NA            "0/0"         "1/1"        
## HiC_scaffold_86_36357265  "1/1"         NA            NA           
## HiC_scaffold_87_1253643   "0/0"         NA            "0/1"        
## HiC_scaffold_87_2137958   "1/1"         "1/1"         "0|1"        
## HiC_scaffold_87_3980100   NA            "1/1"         "1/1"        
## HiC_scaffold_87_4395923   NA            "0/0"         "0/0"        
## HiC_scaffold_87_5489328   "0/0"         "1|1"         "1|1"        
## HiC_scaffold_87_6300441   "0/0"         "0/1"         "0/1"        
## HiC_scaffold_87_16306904  "0/1"         NA            "1/1"        
## HiC_scaffold_87_44780945  NA            "1|1"         "0/0"        
## HiC_scaffold_88_5584327   NA            "1|1"         "1/1"        
## HiC_scaffold_88_7104630   "0/0"         "1|1"         "1|1"        
## HiC_scaffold_88_7104631   "0/0"         "1|1"         "1|1"        
## HiC_scaffold_88_7104638   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_88_7104639   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_88_7104640   "0/0"         "1|1"         "1|1"        
## HiC_scaffold_88_7479340   NA            "0/0"         "0|1"        
## HiC_scaffold_88_8773607   "1|1"         NA            "0/0"        
## HiC_scaffold_88_9883678   NA            "1|1"         "1|1"        
## HiC_scaffold_88_10878718  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_88_19365116  NA            "1/1"         "0/0"        
## HiC_scaffold_88_20477349  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_88_20557885  NA            "0/0"         NA           
## HiC_scaffold_89_675045    "0/0"         "0/0"         "1/1"        
## HiC_scaffold_89_2815845   NA            NA            "0/0"        
## HiC_scaffold_89_2843940   "0/0"         "1/1"         NA           
## HiC_scaffold_89_3018830   "1/1"         "1/1"         NA           
## HiC_scaffold_89_13745506  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_89_30006907  "0/0"         "0/0"         NA           
## HiC_scaffold_89_36509388  "0/0"         NA            NA           
## HiC_scaffold_89_38703735  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_89_38764895  NA            NA            "0/0"        
## HiC_scaffold_89_42052609  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_89_42054991  "0/0"         "0/0"         NA           
## HiC_scaffold_89_44306958  "1/1"         "1|1"         "0/1"        
## HiC_scaffold_89_44338206  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_89_45298973  "0/0"         NA            NA           
## HiC_scaffold_9_3529921    "1/1"         "1/1"         "1/1"        
## HiC_scaffold_9_5660454    NA            "1|1"         "0/0"        
## HiC_scaffold_9_5660461    NA            "1|1"         "1|1"        
## HiC_scaffold_9_5854070    NA            NA            "0/0"        
## HiC_scaffold_9_6142415    "0/0"         "0/0"         "0/0"        
## HiC_scaffold_9_6142436    "0/0"         "0/0"         "0/0"        
## HiC_scaffold_9_6143781    "0/1"         "0/1"         "0/0"        
## HiC_scaffold_9_6654825    "0/0"         "0/0"         "0/0"        
## HiC_scaffold_9_7094545    NA            "1|1"         NA           
## HiC_scaffold_9_7100208    NA            "0/0"         "0/0"        
## HiC_scaffold_9_7109988    "1/1"         "0/0"         "1/1"        
## HiC_scaffold_9_7111922    "1|1"         "0/0"         "1|1"        
## HiC_scaffold_9_8235781    "1/1"         "1/1"         "1/1"        
## HiC_scaffold_9_8279558    "1/1"         "0/1"         "1/1"        
## HiC_scaffold_9_15679481   NA            "0/0"         "0/0"        
## HiC_scaffold_9_18082611   "0/0"         "0/0"         "2/2"        
## HiC_scaffold_9_18090830   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_9_30240531   NA            "1/1"         "1|1"        
## HiC_scaffold_90_10418696  NA            "1/1"         "1/1"        
## HiC_scaffold_90_11470224  "1/1"         NA            "1|1"        
## HiC_scaffold_90_13593319  "0/1"         "0/1"         "0/1"        
## HiC_scaffold_90_16260161  "1|1"         "0/0"         NA           
## HiC_scaffold_90_22325499  "0/0"         NA            "0/0"        
## HiC_scaffold_90_23574204  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_90_23609908  NA            "1|1"         NA           
## HiC_scaffold_90_23623078  "0/0"         NA            "1|1"        
## HiC_scaffold_90_23626883  NA            "0/0"         NA           
## HiC_scaffold_90_23812663  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_90_25939283  "0/0"         NA            "0/1"        
## HiC_scaffold_90_25985714  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_90_30751272  "0/1"         NA            "0/0"        
## HiC_scaffold_90_31232025  "1|1"         "1|1"         NA           
## HiC_scaffold_90_31245699  "1/1"         "0/1"         NA           
## HiC_scaffold_90_31527975  NA            NA            "0/0"        
## HiC_scaffold_90_31546172  NA            NA            "0|1"        
## HiC_scaffold_90_38511996  "0/0"         "0|1"         "0|0"        
## HiC_scaffold_90_38511999  "0/0"         "0|1"         "0|0"        
## HiC_scaffold_90_38517279  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_90_40624104  "0/0"         "0/0"         NA           
## HiC_scaffold_91_5644765   NA            "0|1"         NA           
## HiC_scaffold_91_5867214   NA            "1|1"         "1|1"        
## HiC_scaffold_91_5867226   NA            "1|1"         "1|1"        
## HiC_scaffold_91_7704263   "0|1"         "1|1"         NA           
## HiC_scaffold_91_7871360   "0/0"         "0/1"         "0/0"        
## HiC_scaffold_91_8538014   "1/1"         "1/1"         "0/0"        
## HiC_scaffold_91_13230485  "1|1"         "0/0"         NA           
## HiC_scaffold_91_28696118  NA            NA            "0/0"        
## HiC_scaffold_91_28696625  "0/0"         NA            "0|1"        
## HiC_scaffold_91_42177482  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_91_46813640  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_92_23783035  "0/0"         "0/0"         NA           
## HiC_scaffold_92_23783036  "0/0"         "0/0"         NA           
## HiC_scaffold_92_24712793  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_92_28698258  "0/0"         "1/1"         "1|1"        
## HiC_scaffold_92_40691582  "2/2"         "1/1"         NA           
## HiC_scaffold_92_43967712  NA            "0/0"         NA           
## HiC_scaffold_92_47147572  "0/0"         NA            NA           
## HiC_scaffold_92_49042714  "0|1"         "1|1"         NA           
## HiC_scaffold_92_49042715  "0|1"         "1|1"         NA           
## HiC_scaffold_92_53634002  NA            "1/1"         "1/1"        
## HiC_scaffold_92_58211868  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_92_60114155  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_92_63603483  NA            "0/0"         NA           
## HiC_scaffold_92_64797225  NA            "1|1"         "0/0"        
## HiC_scaffold_92_68367476  "0|1"         "0/0"         NA           
## HiC_scaffold_93_1912167   "0/1"         "1/1"         "0/0"        
## HiC_scaffold_93_2485978   NA            "0/0"         "0/0"        
## HiC_scaffold_93_3227638   NA            "0/0"         NA           
## HiC_scaffold_93_3227641   "0/0"         "1|1"         NA           
## HiC_scaffold_93_13971208  NA            "1/1"         "1/1"        
## HiC_scaffold_93_13987080  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_93_21125468  NA            NA            "0/1"        
## HiC_scaffold_93_21845293  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_93_21845310  "0/0"         "1|1"         "1/1"        
## HiC_scaffold_93_21846342  NA            NA            "0/0"        
## HiC_scaffold_93_21846356  NA            NA            NA           
## HiC_scaffold_93_22589723  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_93_22619278  "1|1"         NA            "0/0"        
## HiC_scaffold_93_22631258  "1|1"         "0|1"         "0/0"        
## HiC_scaffold_93_22631266  "1|1"         "0|1"         "0/0"        
## HiC_scaffold_94_3110102   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_94_3205919   "0/1"         "0|0"         "0/0"        
## HiC_scaffold_94_9023846   "0/0"         "0/0"         NA           
## HiC_scaffold_94_11572820  NA            "0/0"         "1/1"        
## HiC_scaffold_94_12368532  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_94_42179418  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_94_42179519  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_94_51646206  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_94_52781289  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_94_53790035  NA            "0/1"         "1/1"        
## HiC_scaffold_94_53792738  "1|1"         "1/1"         NA           
## HiC_scaffold_94_56768905  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_946_81276    NA            "0/0"         "0/0"        
## HiC_scaffold_95_3189690   NA            "1/1"         "1/1"        
## HiC_scaffold_95_4397298   "1|1"         NA            "0/0"        
## HiC_scaffold_95_9469157   NA            "0/0"         "0/0"        
## HiC_scaffold_95_10641411  "0/0"         NA            "0/0"        
## HiC_scaffold_95_10949821  NA            NA            "0/0"        
## HiC_scaffold_95_12993394  "0|1"         NA            NA           
## HiC_scaffold_95_15515793  "0/0"         NA            "0/0"        
## HiC_scaffold_95_15608785  NA            "0/0"         "0/0"        
## HiC_scaffold_95_15609137  NA            NA            "0/0"        
## HiC_scaffold_95_16295316  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_95_22656165  "0/0"         NA            NA           
## HiC_scaffold_95_25885727  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_96_10460019  "0/0"         NA            "0/1"        
## HiC_scaffold_96_27155785  NA            "0/1"         "0/0"        
## HiC_scaffold_96_37939434  "0|1"         "0/1"         "0/0"        
## HiC_scaffold_96_51115048  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_96_51116511  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_96_51915040  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_96_52681287  NA            "0/0"         "0/0"        
## HiC_scaffold_96_53276519  "0/1"         "0/0"         NA           
## HiC_scaffold_97_1736926   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_97_1736994   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_97_3863543   "1/1"         "1/1"         "0/0"        
## HiC_scaffold_97_4200445   "0/1"         "0/0"         "0/1"        
## HiC_scaffold_97_4799162   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_97_5027892   "1/1"         NA            NA           
## HiC_scaffold_97_8007933   "0/0"         NA            "0/0"        
## HiC_scaffold_97_17997210  "0/0"         NA            NA           
## HiC_scaffold_97_18604647  "0/0"         "1/1"         NA           
## HiC_scaffold_97_20239636  NA            "0/0"         "0/0"        
## HiC_scaffold_98_15154096  "0/0"         NA            "0/0"        
## HiC_scaffold_98_22342667  "1|1"         "0/0"         "0|1"        
## HiC_scaffold_98_22634293  NA            "1|1"         "1|1"        
## HiC_scaffold_98_22634294  NA            "1|1"         "1|1"        
## HiC_scaffold_98_22721138  "1/1"         NA            "1|1"        
## HiC_scaffold_98_22869378  "0/1"         NA            "0/0"        
## HiC_scaffold_98_24108405  "1|1"         "0/0"         NA           
## HiC_scaffold_98_27359592  "1|1"         "0/0"         "1/1"        
## HiC_scaffold_98_28549834  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_98_28867520  "1|1"         "0|1"         "1|1"        
## HiC_scaffold_98_28867524  "1|1"         "0|2"         "1|1"        
## HiC_scaffold_98_29431717  NA            "1|1"         "1/1"        
## HiC_scaffold_98_29675109  NA            NA            "0/0"        
## HiC_scaffold_99_1163244   NA            "1/1"         "1/1"        
## HiC_scaffold_99_1451611   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_99_2021961   NA            "0/0"         "0/0"        
## HiC_scaffold_99_5134392   "1/1"         NA            "0/1"        
## HiC_scaffold_99_5239109   "1/1"         "1/1"         NA           
## HiC_scaffold_99_6917738   NA            "0/0"         NA           
## HiC_scaffold_99_11221970  NA            NA            NA           
## HiC_scaffold_99_25982503  "1/1"         "0/1"         "0/1"        
##                           Tank_20_Crab_1 Tank_20_Crab_2 Tank_20_Crab_3
## HiC_scaffold_1_2523394    "0/1"          "0/0"          "0/0"         
## HiC_scaffold_1_2542157    NA             "0/1"          "0/0"         
## HiC_scaffold_1_2647806    "1/1"          NA             "0/0"         
## HiC_scaffold_1_2970226    "1|1"          "0/1"          "0/0"         
## HiC_scaffold_1_3329447    "0/0"          "0/0"          "2|2"         
## HiC_scaffold_1_3795100    NA             "1|1"          "0/0"         
## HiC_scaffold_10_2221345   NA             "0/0"          "1/1"         
## HiC_scaffold_10_2299490   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_10_2565301   "0/0"          "0/1"          "1/1"         
## HiC_scaffold_10_3864355   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_10_4319900   NA             "0/0"          "0/0"         
## HiC_scaffold_10_4319907   NA             "0/0"          "0/0"         
## HiC_scaffold_10_5404579   "0/0"          "1/1"          "0/1"         
## HiC_scaffold_10_5843373   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_100_854947   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_100_1070817  "0|1"          "1/1"          "0/0"         
## HiC_scaffold_100_2002094  "0/0"          "2|2"          "0/0"         
## HiC_scaffold_100_2002097  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_100_2010331  "1|1"          "0/1"          NA            
## HiC_scaffold_100_5186498  NA             "1/1"          "1/1"         
## HiC_scaffold_100_5828477  NA             "0/0"          "0/0"         
## HiC_scaffold_100_6470419  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_100_6739225  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_100_6739258  NA             "1|1"          "0/0"         
## HiC_scaffold_100_6739264  NA             "1|1"          "0/0"         
## HiC_scaffold_100_6907177  "1|1"          "0/0"          "1/1"         
## HiC_scaffold_100_8384481  "0/0"          "1|1"          NA            
## HiC_scaffold_100_8384495  "0/0"          "1/1"          NA            
## HiC_scaffold_100_9451470  NA             "0/2"          "0/0"         
## HiC_scaffold_100_10464574 "1/1"          "0/0"          "1/1"         
## HiC_scaffold_100_11934792 "1|1"          "1/1"          "1|1"         
## HiC_scaffold_100_11980177 "1|1"          "1/1"          "1/1"         
## HiC_scaffold_100_18465760 "0/0"          "0/0"          "0|1"         
## HiC_scaffold_100_18465762 "0/0"          "0/0"          "0|1"         
## HiC_scaffold_100_18466205 NA             "0/0"          NA            
## HiC_scaffold_100_31738115 "1/1"          NA             NA            
## HiC_scaffold_100_44227362 "0/0"          "0/0"          "0/0"         
## HiC_scaffold_101_12808961 "0|1"          "1|1"          "1|1"         
## HiC_scaffold_101_13897149 NA             "1/1"          "1/1"         
## HiC_scaffold_101_18337279 "0/0"          "1/1"          NA            
## HiC_scaffold_101_20800167 "1/1"          "0/1"          "1/1"         
## HiC_scaffold_102_2260041  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_102_8734519  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_102_10233999 NA             "0/0"          "0/0"         
## HiC_scaffold_102_11446042 "1/1"          "0/0"          "0/0"         
## HiC_scaffold_102_15918694 "0/1"          "0/1"          NA            
## HiC_scaffold_102_15935667 "0/0"          "0/0"          "1/1"         
## HiC_scaffold_102_17442643 "1/1"          "0|1"          "1/1"         
## HiC_scaffold_102_17608969 "0/0"          "0/0"          "0/0"         
## HiC_scaffold_102_20180185 "1/1"          "0/1"          "1/1"         
## HiC_scaffold_102_24788723 "1/1"          "0/1"          "0/0"         
## HiC_scaffold_102_25423729 "1|1"          "1|1"          "1|1"         
## HiC_scaffold_102_39755142 "0/1"          "1/1"          "1/1"         
## HiC_scaffold_102_52046978 "0/1"          "0/0"          "1/1"         
## HiC_scaffold_1027_34152   "0/1"          "1/1"          "0/0"         
## HiC_scaffold_103_601715   NA             "0/1"          NA            
## HiC_scaffold_103_2891384  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_103_8191270  "2|2"          "0/1"          "0/1"         
## HiC_scaffold_103_9521272  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_103_14768909 "1|1"          "1|1"          "0/0"         
## HiC_scaffold_103_19312119 "1|1"          "1|1"          NA            
## HiC_scaffold_103_21284866 "0/0"          "1/1"          "1/1"         
## HiC_scaffold_103_31428453 "1|1"          "1|1"          "1|1"         
## HiC_scaffold_103_42567396 "0/1"          "0/1"          "0/1"         
## HiC_scaffold_103_45921571 "0/0"          "0/0"          NA            
## HiC_scaffold_103_45921573 "0/0"          "0/0"          NA            
## HiC_scaffold_103_49592022 NA             "1|1"          "0/1"         
## HiC_scaffold_103_49620132 "0|1"          "1|1"          "0/0"         
## HiC_scaffold_103_50440915 "0/0"          "1|1"          "1/1"         
## HiC_scaffold_103_51944137 "0/1"          "0/0"          "1/1"         
## HiC_scaffold_103_54308582 "0/0"          "0/1"          "0/0"         
## HiC_scaffold_103_54424067 "0/0"          "1|1"          "0/0"         
## HiC_scaffold_103_56932900 NA             "1/1"          "1/1"         
## HiC_scaffold_103_57470264 "1|1"          "0|1"          "1|1"         
## HiC_scaffold_104_7771140  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_104_9103028  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_104_10633168 "0/0"          "1/1"          "1/1"         
## HiC_scaffold_104_18917031 "1/1"          NA             "0/0"         
## HiC_scaffold_104_20851902 "1/1"          "1/1"          "0/0"         
## HiC_scaffold_104_24451803 "1/1"          "0/1"          NA            
## HiC_scaffold_104_28597688 "0/1"          "0/1"          "1/1"         
## HiC_scaffold_104_40927999 "0/0"          "0/0"          "1/1"         
## HiC_scaffold_104_46490074 "0/1"          NA             "0/0"         
## HiC_scaffold_104_49759053 "0/1"          "0/0"          "0/0"         
## HiC_scaffold_104_57267896 "0/1"          "0/1"          NA            
## HiC_scaffold_104_62570010 "0/0"          "0/1"          "0/0"         
## HiC_scaffold_11_32804173  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_11_34516508  "0|1"          "1|1"          "1|1"         
## HiC_scaffold_11_35332996  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_11_35904027  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_11_41539793  NA             "1/1"          "0/0"         
## HiC_scaffold_11_41604080  "1|1"          "1/1"          "1|1"         
## HiC_scaffold_11_42855323  NA             "1/1"          "0/0"         
## HiC_scaffold_11_45339409  "0|1"          NA             "0/0"         
## HiC_scaffold_11_45339410  "0/1"          NA             "0/0"         
## HiC_scaffold_11_47544035  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_12_7515164   NA             "1/1"          NA            
## HiC_scaffold_12_12640100  NA             "0/0"          "0/0"         
## HiC_scaffold_12_12826705  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_12_14899285  "1/1"          "0/0"          NA            
## HiC_scaffold_12_17465672  "0/1"          "0/0"          NA            
## HiC_scaffold_12_22770710  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_12_32318964  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_12_35136373  "0|1"          "0/0"          "1|1"         
## HiC_scaffold_12_40687860  "0/0"          "0/0"          NA            
## HiC_scaffold_13_2938168   "0/1"          "1/1"          "1/1"         
## HiC_scaffold_13_20350974  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_13_27759554  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_13_28146828  "0|0"          "0/0"          "0/0"         
## HiC_scaffold_13_28146830  "0|0"          "0/0"          "0/0"         
## HiC_scaffold_13_28925343  NA             "1/1"          NA            
## HiC_scaffold_13_31913129  "1/1"          "0/0"          NA            
## HiC_scaffold_13_32078924  NA             "1|1"          "1|1"         
## HiC_scaffold_13_33864805  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_13_34892542  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_13_34893103  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_13_35762551  "0|1"          "0/0"          "0|1"         
## HiC_scaffold_13_35881745  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_13_35881749  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_14_3843214   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_14_25884262  "0/0"          NA             "0/2"         
## HiC_scaffold_14_27050415  "1/1"          "1/1"          NA            
## HiC_scaffold_14_27118495  "1/1"          NA             "1/1"         
## HiC_scaffold_14_27277222  "0|2"          "1/1"          "0/0"         
## HiC_scaffold_14_29215814  "0/0"          "1|1"          "0/1"         
## HiC_scaffold_15_2460398   "1|1"          "0|1"          NA            
## HiC_scaffold_15_2462980   "1/1"          "0/1"          "0/0"         
## HiC_scaffold_15_2467289   "1|1"          "1/1"          "0/1"         
## HiC_scaffold_15_5669141   "1/1"          "0/1"          "0/1"         
## HiC_scaffold_15_13700694  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_15_17825275  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_15_19938475  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_15_23865956  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_15_28837774  "1|1"          "0/1"          NA            
## HiC_scaffold_15_28837810  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_15_28837823  "0/0"          NA             "1/1"         
## HiC_scaffold_15_28837835  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_15_28837841  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_15_28837854  "1/1"          "1|1"          "1|1"         
## HiC_scaffold_15_34827832  "0/0"          "0/1"          NA            
## HiC_scaffold_15_34893807  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_15_35327348  "0/1"          NA             NA            
## HiC_scaffold_15_42161112  "0|1"          "0/0"          "1|1"         
## HiC_scaffold_15_42164926  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_15_42164946  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_15_46289572  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_15_50591576  "0|1"          "1|1"          "0/0"         
## HiC_scaffold_15_50759128  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_15_51188336  "1|1"          "1|1"          NA            
## HiC_scaffold_15_54726640  NA             "0/0"          "1/1"         
## HiC_scaffold_15_54788235  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_15_56162375  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_15_61091106  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_15_61464359  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_15_61510386  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_15_62309788  "1|1"          "0/0"          NA            
## HiC_scaffold_15_62309793  "1|1"          "0/0"          NA            
## HiC_scaffold_15_62771254  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_15_63493927  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_15_64997502  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_15_65007865  NA             "1|1"          "1|1"         
## HiC_scaffold_15_65007879  NA             "1|1"          "1|1"         
## HiC_scaffold_15_66038529  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_15_69811281  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_16_14205925  "1/1"          "0/0"          NA            
## HiC_scaffold_16_30404047  "0/0"          NA             NA            
## HiC_scaffold_16_57413288  "0/0"          "0|1"          NA            
## HiC_scaffold_16_63687578  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_16_74138787  "0/1"          "0/0"          NA            
## HiC_scaffold_16_74140106  NA             "0/0"          "1/1"         
## HiC_scaffold_16_76276015  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_17_11390873  "0/0"          "0|1"          "1|1"         
## HiC_scaffold_17_12551128  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_17_16615612  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_17_18838093  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_17_22801072  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_17_23788599  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_17_29383895  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_17_29618771  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_17_29976139  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_17_31107213  NA             "1/1"          "1/1"         
## HiC_scaffold_17_32493792  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_17_33732050  NA             "0/1"          "0/1"         
## HiC_scaffold_17_33801314  NA             "1|1"          "0/0"         
## HiC_scaffold_17_34081889  NA             "0/1"          NA            
## HiC_scaffold_18_227565    "1|1"          "0/0"          "0/0"         
## HiC_scaffold_18_1213486   "0/1"          "1/1"          "1/1"         
## HiC_scaffold_18_1701312   NA             NA             "0/0"         
## HiC_scaffold_18_3506437   "1/1"          "0/1"          "1/1"         
## HiC_scaffold_18_6304978   NA             "1/1"          NA            
## HiC_scaffold_18_6351493   "0/0"          "1/1"          "1/1"         
## HiC_scaffold_18_6358009   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_18_10770701  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_18_13342858  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_18_20045832  "0/0"          "2|2"          "0/0"         
## HiC_scaffold_18_22682683  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_18_26337790  "1|1"          "0/0"          NA            
## HiC_scaffold_18_48929148  "0/0"          NA             "0/0"         
## HiC_scaffold_18_51490626  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_18_53723137  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_18_54496637  "1|1"          "1|1"          NA            
## HiC_scaffold_18_55294388  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_19_279726    "0/1"          NA             NA            
## HiC_scaffold_19_6426572   "0/0"          "1/1"          "1/1"         
## HiC_scaffold_19_6575887   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_19_7755254   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_19_9301421   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_19_9357388   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_19_9778841   "1|1"          "1/1"          "1/1"         
## HiC_scaffold_19_10928976  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_19_10928980  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_19_10928982  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_19_11106347  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_19_11590139  "0/1"          "0/0"          NA            
## HiC_scaffold_19_11665300  "0/1"          "0/1"          "1/1"         
## HiC_scaffold_19_14793640  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_19_22112743  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_19_25473671  "1/1"          NA             "1/1"         
## HiC_scaffold_19_25473692  "0/1"          NA             "1/1"         
## HiC_scaffold_19_28110829  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_19_28465002  NA             "1/1"          "1/1"         
## HiC_scaffold_19_28465167  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_19_30106869  "1|1"          "1|1"          NA            
## HiC_scaffold_19_52538858  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_19_52596196  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_19_53482993  "1/1"          "0/1"          NA            
## HiC_scaffold_19_54312637  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_19_59345841  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_2_3296144    "1|1"          "1|1"          "1|1"         
## HiC_scaffold_2_3418589    "1/1"          NA             "0/0"         
## HiC_scaffold_2_3864060    NA             "0|1"          "1/1"         
## HiC_scaffold_2_4104755    "0|1"          "0/0"          "0|2"         
## HiC_scaffold_2_4104758    "0/0"          "0/0"          "0|2"         
## HiC_scaffold_2_8316721    "0/1"          "0/0"          "0/1"         
## HiC_scaffold_2_9098999    "1/1"          "0/1"          "0/0"         
## HiC_scaffold_2_10457537   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_2_19048125   "0/1"          "0/1"          "1/1"         
## HiC_scaffold_2_21748201   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_2_33187764   "1|1"          "0/0"          "1|1"         
## HiC_scaffold_2_33187770   "1|1"          "0/0"          "1|1"         
## HiC_scaffold_2_33187959   "1/1"          "0/1"          "1/1"         
## HiC_scaffold_2_41603929   "0/0"          "0/1"          NA            
## HiC_scaffold_2_52233191   NA             "1/1"          "0/0"         
## HiC_scaffold_2_52400748   "1/1"          "1|1"          "1/1"         
## HiC_scaffold_2_52403793   "0|1"          "0/1"          "1/1"         
## HiC_scaffold_2_52799130   "0/0"          NA             "0/1"         
## HiC_scaffold_20_10332897  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_20_17198418  NA             NA             "0/0"         
## HiC_scaffold_20_17915398  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_20_18872955  "1/1"          NA             NA            
## HiC_scaffold_20_19055301  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_20_19150094  NA             "0/1"          "0/0"         
## HiC_scaffold_20_20651022  "0/1"          "0/0"          "1|1"         
## HiC_scaffold_20_22651296  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_21_2009156   NA             "1|1"          NA            
## HiC_scaffold_21_2435648   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_21_7164210   NA             "0/0"          "0/0"         
## HiC_scaffold_21_9786512   "1/1"          "0/1"          NA            
## HiC_scaffold_21_12424922  "0|1"          "1/1"          "1/1"         
## HiC_scaffold_21_17966833  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_21_19025429  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_21_20058318  "0/0"          "0/1"          "0|1"         
## HiC_scaffold_21_20562855  "0|1"          "0|1"          NA            
## HiC_scaffold_21_20661860  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_21_20895395  "0/0"          NA             "1|1"         
## HiC_scaffold_21_21158811  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_21_22250857  "1/1"          "0/1"          "0/1"         
## HiC_scaffold_21_22250866  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_21_22257737  "1/1"          "1/1"          "1|1"         
## HiC_scaffold_21_22644667  "0|1"          "1|1"          "1|1"         
## HiC_scaffold_21_22644673  "0|1"          "1|1"          "1|1"         
## HiC_scaffold_21_22666888  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_21_23905416  "1|1"          NA             "0/0"         
## HiC_scaffold_21_23981651  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_21_24287068  "0/1"          "0/0"          "1|1"         
## HiC_scaffold_21_30798434  "0/1"          "1|1"          "0/0"         
## HiC_scaffold_21_35006232  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_21_35779294  "0/1"          "0/1"          "0/0"         
## HiC_scaffold_22_124910    "1/1"          "1/1"          "0/1"         
## HiC_scaffold_22_751023    "1|1"          "1/1"          "0/0"         
## HiC_scaffold_22_1042644   "1|1"          "0|1"          "0|1"         
## HiC_scaffold_22_1044708   "1/1"          "1/1"          NA            
## HiC_scaffold_22_2174911   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_22_3431122   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_22_3446787   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_22_3451756   "0/0"          "1/1"          "0|1"         
## HiC_scaffold_22_3720435   "0/1"          "1/1"          "1/1"         
## HiC_scaffold_22_4065466   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_22_4739889   "0/0"          "2/2"          "0/0"         
## HiC_scaffold_22_4918263   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_22_5750008   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_22_5769942   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_22_28264522  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_22_28265115  "1/1"          NA             "0/0"         
## HiC_scaffold_22_29205851  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_22_29822340  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_22_30797357  NA             "0/1"          "0|1"         
## HiC_scaffold_22_32042610  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_23_11215327  "1/1"          "1/1"          NA            
## HiC_scaffold_23_27081333  "0/0"          "1/1"          "0|1"         
## HiC_scaffold_23_28672255  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_23_29218828  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_23_32528768  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_23_32669383  NA             "0/0"          "0/0"         
## HiC_scaffold_23_33199663  "0/1"          "0/1"          "1/1"         
## HiC_scaffold_23_33245843  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_23_40824545  "0|1"          "0|1"          "0|1"         
## HiC_scaffold_23_41504669  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_24_16622654  "1/1"          "0/1"          NA            
## HiC_scaffold_24_16622681  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_24_19851560  "0/0"          "0|1"          NA            
## HiC_scaffold_24_20590563  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_24_27745754  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_24_28763699  "1|1"          "1|1"          NA            
## HiC_scaffold_24_28763703  "1|1"          "0/1"          NA            
## HiC_scaffold_25_4135969   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_25_4201677   NA             "0/0"          "0/0"         
## HiC_scaffold_25_5872831   NA             "1/1"          NA            
## HiC_scaffold_25_6879627   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_25_8172813   NA             NA             "0/0"         
## HiC_scaffold_25_9969507   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_25_10691336  NA             "0/0"          NA            
## HiC_scaffold_25_21286462  "0/1"          "0/0"          NA            
## HiC_scaffold_26_4086662   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_26_7539671   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_26_8348511   "1/1"          "1/1"          NA            
## HiC_scaffold_26_9043748   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_26_9045655   "0/0"          "0/1"          "0/0"         
## HiC_scaffold_26_11253181  "0|1"          "0/1"          NA            
## HiC_scaffold_26_17828344  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_26_17932520  NA             "1/1"          "1/1"         
## HiC_scaffold_26_17941459  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_26_17960877  "1/1"          NA             "0/1"         
## HiC_scaffold_26_18284041  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_26_18288701  "0|1"          "1|1"          NA            
## HiC_scaffold_26_18294422  "0/0"          "1|1"          "1/1"         
## HiC_scaffold_26_21307365  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_26_22159924  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_26_22161535  "1/1"          "1|2"          "0/0"         
## HiC_scaffold_26_24794176  "0/1"          "0/1"          "1/1"         
## HiC_scaffold_26_28538113  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_26_29031357  "0|1"          "1/1"          "0/1"         
## HiC_scaffold_26_29163462  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_26_42631018  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_26_42634814  "1/1"          "1/1"          NA            
## HiC_scaffold_26_43483190  NA             "0/1"          "0/0"         
## HiC_scaffold_26_49955889  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_26_58342510  "1|1"          NA             "0/0"         
## HiC_scaffold_27_1496120   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_27_1947057   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_27_2359058   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_27_2699645   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_27_4425475   "1|1"          "0|1"          "0/0"         
## HiC_scaffold_27_7539469   NA             "1|1"          "1|1"         
## HiC_scaffold_27_7777122   "1|1"          "0/0"          "0/1"         
## HiC_scaffold_27_16657070  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_27_24539255  "0/0"          NA             NA            
## HiC_scaffold_27_34642359  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_27_34647277  "0/0"          NA             "2|2"         
## HiC_scaffold_27_35380535  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_27_35383230  "0/0"          NA             "1|1"         
## HiC_scaffold_28_21261390  NA             "0/0"          "1|1"         
## HiC_scaffold_28_24490442  NA             "0/0"          "0/0"         
## HiC_scaffold_28_25601927  NA             "1/1"          "0/1"         
## HiC_scaffold_28_31793968  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_28_32126687  "0/0"          NA             "0/0"         
## HiC_scaffold_28_34779518  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_28_36042491  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_28_36692361  "0/0"          "0/0"          NA            
## HiC_scaffold_28_38672993  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_28_39640526  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_28_40169242  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_28_41059640  NA             "1|1"          "1|1"         
## HiC_scaffold_28_42514830  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_28_42601570  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_28_42601585  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_28_43018803  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_28_43036165  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_29_344317    "0/0"          "1/1"          "0/0"         
## HiC_scaffold_29_3811176   "1/1"          "1/1"          "1|1"         
## HiC_scaffold_29_6073993   "0|1"          "0|1"          "1/1"         
## HiC_scaffold_29_6415222   "0/0"          "2/2"          "0/0"         
## HiC_scaffold_29_8224424   NA             "0/1"          "0/1"         
## HiC_scaffold_29_11153624  NA             "0/1"          "1/1"         
## HiC_scaffold_29_11153712  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_29_11167966  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_29_11491468  NA             "0/1"          "0/0"         
## HiC_scaffold_29_12103558  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_29_14279322  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_29_14913907  "0/0"          NA             "0/0"         
## HiC_scaffold_29_16378276  "1/1"          "1/1"          NA            
## HiC_scaffold_29_20635937  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_29_20636787  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_29_22560215  "1/1"          "1/1"          NA            
## HiC_scaffold_29_22561144  "1/1"          "0/1"          "0/1"         
## HiC_scaffold_29_24017849  "0/0"          "1/1"          "2|2"         
## HiC_scaffold_29_31603590  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_3_21670751   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_3_24747014   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_3_27861792   "0/1"          "1/1"          "0/0"         
## HiC_scaffold_3_28057869   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_3_28441436   "0|1"          "0/1"          "0/1"         
## HiC_scaffold_3_28694380   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_3_31361023   "1|1"          "0/0"          NA            
## HiC_scaffold_3_31960572   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_3_32157169   "0/1"          "1/1"          "1/1"         
## HiC_scaffold_3_32159152   "0/0"          "0/0"          NA            
## HiC_scaffold_3_34124237   NA             "0/0"          "1/1"         
## HiC_scaffold_30_14199802  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_30_16052331  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_30_19914075  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_30_20688783  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_30_21446076  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_30_21598563  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_30_22155728  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_31_687411    "0/0"          "1/1"          NA            
## HiC_scaffold_31_3224722   "0/0"          "0/1"          "1/1"         
## HiC_scaffold_31_3574854   NA             NA             "0/0"         
## HiC_scaffold_31_5899551   "1/1"          NA             "1/1"         
## HiC_scaffold_31_5911491   "0/0"          "1|1"          "0|1"         
## HiC_scaffold_31_6297680   "1/1"          "0/0"          NA            
## HiC_scaffold_31_12394016  NA             "1|1"          "0/0"         
## HiC_scaffold_31_12394040  NA             "0/0"          "1|1"         
## HiC_scaffold_31_18612650  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_32_4446859   NA             "0/0"          "0/0"         
## HiC_scaffold_32_5274796   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_32_5275108   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_32_5282358   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_32_5450203   "1|1"          "0/0"          "1|1"         
## HiC_scaffold_32_44200178  "0/1"          "1/1"          "0/1"         
## HiC_scaffold_33_638523    "0/0"          "1/1"          "0/0"         
## HiC_scaffold_33_44489563  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_33_44489988  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_33_47080180  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_33_47495907  "1|1"          "1|1"          NA            
## HiC_scaffold_33_51865876  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_34_1096982   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_34_6091943   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_34_6100160   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_34_24368584  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_35_3233120   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_35_3253574   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_35_5512296   "0/0"          "0/1"          "0/0"         
## HiC_scaffold_35_15114788  "1/1"          NA             "1/1"         
## HiC_scaffold_35_21214090  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_35_21462564  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_35_22746783  "0/0"          NA             "1/1"         
## HiC_scaffold_35_22747085  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_35_23059580  "0/0"          NA             "0/0"         
## HiC_scaffold_35_23158882  "1|1"          "1/1"          "1/1"         
## HiC_scaffold_35_23261143  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_35_24403602  "1/1"          "0/0"          "1|1"         
## HiC_scaffold_35_24403620  "1/1"          "1/1"          "1|1"         
## HiC_scaffold_35_24993986  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_35_24993998  "0/1"          "0/0"          "0|1"         
## HiC_scaffold_36_1538038   "1/1"          NA             "1/1"         
## HiC_scaffold_36_2464728   "1/1"          "0/1"          "0/0"         
## HiC_scaffold_36_5489050   "0/0"          "0/1"          "0/1"         
## HiC_scaffold_36_9673981   NA             "0/0"          "0/1"         
## HiC_scaffold_36_9674127   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_36_9674756   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_36_9676329   "1/1"          NA             "1/1"         
## HiC_scaffold_36_12304516  NA             "1|1"          "1/1"         
## HiC_scaffold_36_12515555  "0|1"          NA             "0/0"         
## HiC_scaffold_36_13092647  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_36_13766994  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_36_14567741  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_36_15530578  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_37_679894    "1/1"          "1/1"          "1/1"         
## HiC_scaffold_37_916693    "1|1"          "0|1"          "1/1"         
## HiC_scaffold_37_928146    "0/1"          "0/1"          "0/0"         
## HiC_scaffold_37_1256768   "0/0"          "0/0"          "0|1"         
## HiC_scaffold_37_1270034   NA             "1/1"          "0/1"         
## HiC_scaffold_37_1770997   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_37_1798298   "1/1"          "0/1"          NA            
## HiC_scaffold_37_2010342   "0/0"          "1|1"          NA            
## HiC_scaffold_37_2141526   "0/1"          "0/1"          "1/1"         
## HiC_scaffold_37_3952190   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_37_3952215   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_37_9915037   "0/1"          "0/0"          "0/0"         
## HiC_scaffold_38_5383430   "1/1"          NA             "0/0"         
## HiC_scaffold_38_5668363   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_38_5879849   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_38_5880155   "1/1"          "0/1"          NA            
## HiC_scaffold_38_10612790  "0/0"          "1/1"          "1|1"         
## HiC_scaffold_38_11940240  "0/1"          NA             "2|2"         
## HiC_scaffold_38_12878826  "1/1"          "0/0"          NA            
## HiC_scaffold_38_12959698  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_38_13087368  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_38_13480648  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_38_13965243  "1|1"          NA             "1|1"         
## HiC_scaffold_38_14089955  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_38_14408072  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_38_14931216  "1/1"          "0|1"          "0/0"         
## HiC_scaffold_38_14978356  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_38_14978367  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_38_15292863  "0/1"          NA             NA            
## HiC_scaffold_38_15306135  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_38_16077506  "0/1"          NA             "0/0"         
## HiC_scaffold_38_16138965  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_38_16226040  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_39_1393769   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_39_2014970   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_39_2014982   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_39_2014985   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_39_2426443   "0/0"          NA             "0/0"         
## HiC_scaffold_39_2485330   NA             "1/1"          "1/1"         
## HiC_scaffold_39_3350506   "1|1"          NA             "0/0"         
## HiC_scaffold_39_5897388   "0/0"          "0/0"          "0|1"         
## HiC_scaffold_39_17631133  NA             "0/0"          "0/0"         
## HiC_scaffold_4_12107187   "0/0"          NA             "0/0"         
## HiC_scaffold_4_18241670   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_4_18241723   "1/1"          "1|1"          "1|1"         
## HiC_scaffold_4_22418566   "1|1"          "0/0"          "1|1"         
## HiC_scaffold_4_27899990   "0/1"          "1|1"          NA            
## HiC_scaffold_4_35575118   "1/1"          NA             "0/0"         
## HiC_scaffold_4_38000967   "0|1"          "0/0"          "1/1"         
## HiC_scaffold_4_50654021   NA             NA             "1|1"         
## HiC_scaffold_40_2243415   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_40_3000572   "0/0"          "0/1"          "0/0"         
## HiC_scaffold_40_3014177   "1|1"          "1|1"          NA            
## HiC_scaffold_40_3027900   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_40_3143834   "0/0"          "0/1"          "0/0"         
## HiC_scaffold_40_3843942   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_40_3847620   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_40_3891007   "0/0"          "0/0"          NA            
## HiC_scaffold_40_3920667   "2/2"          "2/2"          "2/2"         
## HiC_scaffold_40_4177963   "1/1"          "0|1"          "0/0"         
## HiC_scaffold_40_4819107   "0/1"          NA             "0/1"         
## HiC_scaffold_40_4819834   NA             "0/0"          "0/0"         
## HiC_scaffold_40_5788271   "1/1"          "0|1"          "0/1"         
## HiC_scaffold_40_5965269   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_40_6204154   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_40_8387917   "0/0"          "0/0"          "1|1"         
## HiC_scaffold_41_3235384   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_41_3583000   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_41_5334504   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_41_5387631   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_41_6423426   "0/0"          "0/1"          NA            
## HiC_scaffold_41_14359947  "1/1"          "1/1"          NA            
## HiC_scaffold_41_24007593  "0/0"          "1|1"          NA            
## HiC_scaffold_41_26225447  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_41_28626484  "0/0"          "0/1"          NA            
## HiC_scaffold_41_28660620  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_41_31007688  "0/1"          "1/1"          NA            
## HiC_scaffold_42_1131084   "0/0"          "1/1"          "0/1"         
## HiC_scaffold_42_1818523   "0/1"          "0/1"          "1/1"         
## HiC_scaffold_42_2165002   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_42_2711332   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_42_6142699   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_42_6744976   "0/1"          "0/1"          NA            
## HiC_scaffold_42_8066919   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_42_8068292   "0|1"          "0/1"          "1/1"         
## HiC_scaffold_42_12487888  "1|1"          "0/1"          NA            
## HiC_scaffold_42_41366687  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_42_47313337  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_42_47313338  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_42_50784971  "0|1"          "0/0"          "1|1"         
## HiC_scaffold_42_50784977  "0|1"          "0/0"          "1|1"         
## HiC_scaffold_42_50784981  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_42_51916989  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_43_3842003   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_43_14140861  "0/0"          "0/1"          NA            
## HiC_scaffold_43_15053605  "0|1"          "1|1"          "1/1"         
## HiC_scaffold_43_17289945  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_43_29967704  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_43_35745831  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_43_37627949  "1|1"          "1/1"          "0|1"         
## HiC_scaffold_43_37628126  "1/1"          "0/1"          NA            
## HiC_scaffold_43_44017118  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_43_55124138  "0|1"          "0|1"          "1|1"         
## HiC_scaffold_43_60107326  NA             "0/1"          "1|1"         
## HiC_scaffold_43_61359386  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_43_61702593  "0/0"          "0|1"          "0|1"         
## HiC_scaffold_43_61702606  "0/0"          "0|1"          "0|1"         
## HiC_scaffold_43_61702721  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_43_61702738  "0/0"          NA             "0/0"         
## HiC_scaffold_43_62511703  "1|1"          "1|1"          NA            
## HiC_scaffold_43_64069457  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_43_64577269  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_44_1920144   "1|1"          "0/0"          "1|1"         
## HiC_scaffold_44_2148035   "1/1"          "0/1"          NA            
## HiC_scaffold_44_2568167   "1/1"          "1/1"          "0/1"         
## HiC_scaffold_45_4180070   "0/1"          "1/1"          NA            
## HiC_scaffold_45_4797754   "2/2"          "2/2"          "0/0"         
## HiC_scaffold_45_5911123   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_45_6958990   "1/1"          "1/1"          NA            
## HiC_scaffold_45_8516216   NA             "1/1"          "0/0"         
## HiC_scaffold_45_10191213  NA             "0/1"          "0/1"         
## HiC_scaffold_45_12005885  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_45_12006766  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_45_24736172  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_45_24739830  "0/0"          "0|1"          "0/0"         
## HiC_scaffold_46_9691567   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_46_17380257  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_46_18387147  "0/1"          "0/0"          NA            
## HiC_scaffold_46_37092355  "0/0"          "0|1"          "1/1"         
## HiC_scaffold_46_39183624  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_46_39390547  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_46_42964941  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_46_42986653  NA             "1/1"          NA            
## HiC_scaffold_46_52074364  NA             "0/1"          "1|1"         
## HiC_scaffold_46_54255667  "0/1"          "1/1"          "0/1"         
## HiC_scaffold_47_3750532   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_47_3751345   "0/0"          NA             "0/0"         
## HiC_scaffold_47_15400639  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_47_24072414  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_47_25273825  NA             "0/0"          "0/0"         
## HiC_scaffold_48_8752752   NA             "0/0"          "0/0"         
## HiC_scaffold_48_10765920  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_48_16077918  NA             "0/0"          "0/0"         
## HiC_scaffold_48_16077940  NA             "1/1"          "1/1"         
## HiC_scaffold_48_16411609  "0/0"          NA             "0/1"         
## HiC_scaffold_48_19972580  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_48_23493079  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_48_23597210  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_48_24478493  "0/0"          NA             "0/0"         
## HiC_scaffold_48_24881148  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_48_25865723  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_48_25984068  "1|1"          "0/0"          NA            
## HiC_scaffold_48_25989079  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_48_30601375  "0/0"          NA             "0/0"         
## HiC_scaffold_48_31662115  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_48_41971562  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_49_3392801   NA             "0/0"          "0/0"         
## HiC_scaffold_49_6101692   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_49_7996315   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_49_9470474   "0/0"          NA             "1/1"         
## HiC_scaffold_49_9886007   "0/1"          "0/0"          "1/1"         
## HiC_scaffold_49_12592113  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_49_12741575  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_49_15135019  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_49_25906219  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_49_26614199  "1/1"          NA             "0/1"         
## HiC_scaffold_49_26655554  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_49_37568341  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_49_37568353  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_49_40002255  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_49_40003229  NA             "0/0"          "1|1"         
## HiC_scaffold_49_42966376  NA             "0/0"          "0/0"         
## HiC_scaffold_5_801252     "0/1"          "0/1"          "0/1"         
## HiC_scaffold_5_1446603    "1|1"          "0|1"          "1|1"         
## HiC_scaffold_5_1446611    "1|1"          "0|1"          "1|1"         
## HiC_scaffold_5_1530759    "0/0"          "1/1"          "0/0"         
## HiC_scaffold_5_1539275    "0/0"          "0/0"          "0/0"         
## HiC_scaffold_5_1789576    "1|1"          "0/0"          "0/0"         
## HiC_scaffold_5_1808197    "1/1"          "0/1"          "1/1"         
## HiC_scaffold_5_1808204    "0/0"          "0/1"          "0/0"         
## HiC_scaffold_5_1943895    NA             "0/1"          "1|1"         
## HiC_scaffold_5_1944469    "0/0"          "1/1"          NA            
## HiC_scaffold_5_2857283    "0/0"          "1/1"          "1/1"         
## HiC_scaffold_5_4061378    "1/1"          "0/0"          "0/0"         
## HiC_scaffold_5_4340647    "0/0"          "0/1"          "0/1"         
## HiC_scaffold_5_4435246    "0/0"          "1/1"          NA            
## HiC_scaffold_5_8868783    "1/1"          "1/1"          "0/0"         
## HiC_scaffold_50_4315969   "1/1"          "0/1"          "1/1"         
## HiC_scaffold_50_11652296  "1/1"          "1/1"          "1|1"         
## HiC_scaffold_50_11657309  "0/1"          "1/1"          "0/1"         
## HiC_scaffold_50_15521027  "0/1"          "0/1"          "0/1"         
## HiC_scaffold_50_21050962  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_50_23686202  "1|1"          NA             NA            
## HiC_scaffold_50_27393462  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_50_42586883  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_50_45087211  "0/1"          "0/1"          "0/1"         
## HiC_scaffold_50_49796550  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_50_54383367  "0/0"          NA             "1|1"         
## HiC_scaffold_50_63318678  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_51_3521000   "0/1"          "0/1"          "0/1"         
## HiC_scaffold_51_4681905   "0/1"          "1/1"          "0/1"         
## HiC_scaffold_51_6305599   "0/1"          "0/1"          "2|2"         
## HiC_scaffold_51_8530818   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_51_11653312  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_51_13138547  "0/0"          "1|1"          "1/1"         
## HiC_scaffold_51_14457091  NA             "1|1"          "1|1"         
## HiC_scaffold_51_15512668  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_51_17816346  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_51_19997934  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_51_19997936  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_51_20870773  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_51_26660104  "0|1"          "0|1"          "1|1"         
## HiC_scaffold_51_40727521  NA             "0/0"          "1|1"         
## HiC_scaffold_51_40892841  NA             NA             "0/1"         
## HiC_scaffold_51_41717519  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_51_42547638  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_52_3335804   "1/1"          "0/1"          "0/0"         
## HiC_scaffold_52_4149130   "1/1"          "0/1"          "0/1"         
## HiC_scaffold_52_6893679   "1|1"          "1|1"          NA            
## HiC_scaffold_52_13155416  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_52_13155437  "1|1"          "0|1"          "1|1"         
## HiC_scaffold_52_13155442  "1|1"          "0|1"          "1|1"         
## HiC_scaffold_52_14885688  "0/0"          "0/0"          NA            
## HiC_scaffold_52_14895078  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_52_15141791  "0/1"          "0/1"          NA            
## HiC_scaffold_52_15743051  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_52_15760201  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_52_15834589  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_52_15841769  "0/0"          NA             "0/1"         
## HiC_scaffold_52_15862421  NA             "1|1"          "1/1"         
## HiC_scaffold_52_15970970  "0/0"          "0|1"          "0/0"         
## HiC_scaffold_52_16275237  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_52_16275240  NA             "0|1"          "0/0"         
## HiC_scaffold_52_16275290  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_52_16524164  "1|1"          "0/1"          "0/0"         
## HiC_scaffold_52_16524572  NA             "1/1"          "1/1"         
## HiC_scaffold_52_16525647  NA             "0/0"          "1|1"         
## HiC_scaffold_52_16637047  "1/1"          "0/0"          "0/1"         
## HiC_scaffold_52_17202127  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_52_17207724  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_52_17508820  NA             "0/0"          "1|1"         
## HiC_scaffold_52_17547593  "0/1"          "0/1"          "0/1"         
## HiC_scaffold_52_17551239  NA             "0/1"          "0/0"         
## HiC_scaffold_52_17560696  "0/0"          "0|1"          "1|1"         
## HiC_scaffold_52_17560699  "0/0"          "0|1"          "1|1"         
## HiC_scaffold_52_17741250  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_52_17742260  "0/0"          "1|1"          "0/1"         
## HiC_scaffold_52_18340578  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_52_18415911  NA             "1/1"          "1/1"         
## HiC_scaffold_52_22189517  "1/1"          "0/1"          "0/1"         
## HiC_scaffold_52_22526592  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_52_26393471  "0/1"          "0/1"          "0/1"         
## HiC_scaffold_52_26799380  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_52_31871931  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_52_31874283  "0/0"          "1|1"          "0/1"         
## HiC_scaffold_52_31874287  "0/0"          "0|1"          "0/0"         
## HiC_scaffold_52_32161053  "0|1"          "1|1"          NA            
## HiC_scaffold_52_33165557  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_52_33897620  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_52_34763156  NA             "0/1"          "1|1"         
## HiC_scaffold_52_34763171  NA             "0/1"          "1|1"         
## HiC_scaffold_52_35174755  NA             "0/1"          "0/0"         
## HiC_scaffold_52_35608453  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_52_35608470  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_52_39464728  NA             "0/0"          "0/0"         
## HiC_scaffold_52_42141354  "0/0"          "1|1"          NA            
## HiC_scaffold_52_44675725  "1/1"          "0/1"          "1|1"         
## HiC_scaffold_52_49935920  "0/0"          "1/1"          "1|1"         
## HiC_scaffold_53_21789524  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_53_25168042  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_53_26398989  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_53_26398992  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_53_26398994  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_53_26549665  "0/1"          "1|1"          "0/1"         
## HiC_scaffold_53_29227676  "0|1"          "0|1"          "0|1"         
## HiC_scaffold_53_31250349  "1/1"          "1|1"          "1/1"         
## HiC_scaffold_54_530581    "1|1"          "1|1"          "1|1"         
## HiC_scaffold_54_794095    "0/0"          "1|1"          "1|1"         
## HiC_scaffold_54_1171109   "0/0"          "0|1"          "1|1"         
## HiC_scaffold_54_1378956   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_54_1380539   "0/1"          "0|1"          "0/1"         
## HiC_scaffold_54_3045015   NA             "1/1"          "1/1"         
## HiC_scaffold_54_3185987   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_54_4401098   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_54_5595903   "1/1"          "1/1"          "0/1"         
## HiC_scaffold_54_5595921   "0/1"          "0/1"          "0/1"         
## HiC_scaffold_54_5595928   "0|1"          "0/1"          "0/0"         
## HiC_scaffold_54_5595949   "1/1"          "1/1"          "0/1"         
## HiC_scaffold_54_6649662   "0/0"          "1/1"          "0/1"         
## HiC_scaffold_54_8036734   "0|1"          "0|1"          NA            
## HiC_scaffold_54_9206614   "1|1"          "0/1"          NA            
## HiC_scaffold_54_35913192  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_54_35913282  "0/1"          NA             "0|1"         
## HiC_scaffold_54_35913283  "1/1"          NA             "0|1"         
## HiC_scaffold_55_1260491   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_55_3254027   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_55_3281985   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_55_5409544   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_55_5411094   "1|1"          "0/1"          "1|1"         
## HiC_scaffold_55_5411115   "1/1"          "0/1"          "1/1"         
## HiC_scaffold_55_18121799  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_55_19605809  NA             "1|1"          "1|1"         
## HiC_scaffold_55_19605817  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_55_19605821  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_55_20195204  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_55_20886967  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_55_23222937  "1/1"          "1/1"          NA            
## HiC_scaffold_55_23626331  "1/1"          "0/0"          NA            
## HiC_scaffold_55_24539590  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_55_24585939  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_55_34174151  "0/0"          "0/1"          "1|1"         
## HiC_scaffold_56_17874332  NA             "1/1"          "0/0"         
## HiC_scaffold_56_18635259  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_56_23654344  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_56_35850533  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_56_35850539  NA             "0/1"          "0/0"         
## HiC_scaffold_56_40813556  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_56_53211633  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_56_60070829  "1/1"          "1/1"          "1|1"         
## HiC_scaffold_56_73286017  "0/1"          "0/1"          "1|1"         
## HiC_scaffold_56_73829442  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_56_73829443  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_56_76060304  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_57_25306408  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_57_29222385  "0/0"          NA             "0/0"         
## HiC_scaffold_57_29592432  "0/1"          "0/1"          "0/1"         
## HiC_scaffold_57_31472698  "0/0"          NA             "0/0"         
## HiC_scaffold_57_32371742  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_57_36495072  "0/0"          "0/0"          NA            
## HiC_scaffold_57_37286264  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_57_38537415  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_57_45438854  "2|2"          NA             NA            
## HiC_scaffold_57_52856874  NA             "0/1"          "0/0"         
## HiC_scaffold_57_53575355  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_57_55856783  "0/0"          NA             "0/0"         
## HiC_scaffold_58_1362614   "0/1"          "1/1"          "0/0"         
## HiC_scaffold_58_1432845   "1/1"          "1/1"          NA            
## HiC_scaffold_58_1541720   "0/0"          "2|2"          "2/2"         
## HiC_scaffold_58_2777120   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_58_2973169   "0/0"          "1/1"          "1/1"         
## HiC_scaffold_58_3243043   NA             "0/0"          "1/1"         
## HiC_scaffold_58_4035282   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_58_5442157   "1|1"          "0|1"          "0/0"         
## HiC_scaffold_58_8004631   "1/1"          NA             "0/0"         
## HiC_scaffold_58_8058998   "1|1"          "0/0"          "0/0"         
## HiC_scaffold_58_8932837   "1/1"          "0/0"          NA            
## HiC_scaffold_58_14814944  "0/0"          "0|1"          "0/1"         
## HiC_scaffold_58_15639988  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_58_15707198  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_58_15707258  "1/1"          "1/1"          NA            
## HiC_scaffold_58_15710623  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_58_19155063  "1|1"          "0/1"          "1|1"         
## HiC_scaffold_58_20224050  "0/0"          "1/1"          NA            
## HiC_scaffold_58_38475355  "1/1"          NA             "1/1"         
## HiC_scaffold_59_3979055   "1/1"          "0/1"          "1/1"         
## HiC_scaffold_59_5071810   "0/1"          "1|1"          "0/0"         
## HiC_scaffold_59_5349936   "0/0"          "0/1"          "0/0"         
## HiC_scaffold_59_5350114   NA             "0/1"          "0/0"         
## HiC_scaffold_59_7738302   "0/0"          "0/0"          "0/1"         
## HiC_scaffold_59_7738351   NA             "0/0"          "0/0"         
## HiC_scaffold_59_7958561   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_59_9273798   "0/1"          "0/0"          NA            
## HiC_scaffold_59_50928099  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_59_52960060  "0/0"          "0|1"          "0/1"         
## HiC_scaffold_6_10569023   "0/0"          "0/1"          "0/1"         
## HiC_scaffold_6_10711445   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_6_13209200   "1|1"          "0/1"          "1|1"         
## HiC_scaffold_6_13213107   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_6_13311684   "0/0"          "0/0"          NA            
## HiC_scaffold_6_15670783   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_6_19111232   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_6_32805498   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_6_38793174   "0|1"          NA             "0|1"         
## HiC_scaffold_6_41092101   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_6_41342933   NA             "0/0"          "0/1"         
## HiC_scaffold_6_47594508   "0/0"          "0/1"          "1/1"         
## HiC_scaffold_60_70878     NA             "1|1"          "1|1"         
## HiC_scaffold_60_99549     "0/0"          "0/0"          "0/0"         
## HiC_scaffold_60_201823    NA             "0/1"          "1/1"         
## HiC_scaffold_60_712969    "1|1"          NA             "1|1"         
## HiC_scaffold_60_744783    "1/1"          NA             "1|1"         
## HiC_scaffold_60_744788    "0/1"          NA             "0|0"         
## HiC_scaffold_60_22142128  "0/1"          "0/0"          "0/1"         
## HiC_scaffold_60_27599770  "1/1"          NA             "1/1"         
## HiC_scaffold_60_30608878  "0/1"          NA             "1|1"         
## HiC_scaffold_60_32657324  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_60_32672580  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_60_38856893  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_60_39028335  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_60_40296869  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_60_42775723  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_60_44687906  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_60_44804601  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_60_53696867  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_60_53696868  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_60_60651515  "0/1"          "0/0"          NA            
## HiC_scaffold_60_70678462  "1/1"          "1/1"          NA            
## HiC_scaffold_61_2205328   "0/0"          NA             "0/0"         
## HiC_scaffold_61_2491706   "1|1"          "1/1"          "1/1"         
## HiC_scaffold_61_4009916   "0/0"          "2/2"          "0/0"         
## HiC_scaffold_61_4062917   "0/0"          "0/2"          "0/0"         
## HiC_scaffold_61_4122763   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_61_4216461   NA             "1/1"          "1/1"         
## HiC_scaffold_61_4325053   "0/0"          "0/0"          NA            
## HiC_scaffold_61_9004838   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_61_14635083  "0/1"          "0/1"          "0/1"         
## HiC_scaffold_62_1128608   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_62_11335200  "0/0"          "0|0"          NA            
## HiC_scaffold_62_18828476  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_62_21548870  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_62_23103274  "0/0"          "0/0"          NA            
## HiC_scaffold_62_25793456  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_62_25887474  "1/1"          "0/0"          NA            
## HiC_scaffold_62_28516096  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_62_28516099  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_62_28818725  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_62_28818729  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_62_45207353  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_63_3092269   "1/1"          "0/1"          "1/1"         
## HiC_scaffold_63_3977940   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_63_4084937   "0/0"          "0|1"          "1/1"         
## HiC_scaffold_63_4196326   "0/1"          "0|1"          "1/1"         
## HiC_scaffold_63_6262453   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_63_6350204   "1|1"          "1/1"          "1/1"         
## HiC_scaffold_63_6458794   "0/0"          "0/1"          "0|1"         
## HiC_scaffold_64_9162978   "0/0"          "0/1"          "0/0"         
## HiC_scaffold_64_16876561  NA             "0/0"          "1|1"         
## HiC_scaffold_64_17543009  NA             "0/1"          "0/0"         
## HiC_scaffold_64_18925356  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_64_19133050  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_64_19627769  "1|1"          "0|1"          "0/0"         
## HiC_scaffold_64_20477250  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_64_22816677  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_64_22954654  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_64_22954658  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_64_22954682  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_65_6829971   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_65_8071102   "1|1"          "0/0"          NA            
## HiC_scaffold_65_9023979   "0/0"          "0/1"          NA            
## HiC_scaffold_65_9839671   "0/0"          "0|1"          "0/0"         
## HiC_scaffold_65_10404778  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_65_11327791  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_65_11332104  "1/1"          NA             "0/0"         
## HiC_scaffold_65_34823822  "0/0"          "1/1"          "1|1"         
## HiC_scaffold_65_51418017  "1/1"          "1|1"          "1/1"         
## HiC_scaffold_65_54053979  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_65_57110875  NA             NA             "1/1"         
## HiC_scaffold_66_15615363  NA             "1|1"          "0/0"         
## HiC_scaffold_66_15672090  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_66_17903445  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_66_18298629  "0|1"          "0|1"          "1|1"         
## HiC_scaffold_66_19730676  "0/1"          "1|1"          "1|1"         
## HiC_scaffold_66_23688768  "0/1"          "0/1"          "0/1"         
## HiC_scaffold_66_26614535  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_66_27445665  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_66_29457165  NA             "0|1"          "1|1"         
## HiC_scaffold_66_29457180  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_66_30116287  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_66_31603503  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_66_33261460  "0/1"          "0/1"          "0/0"         
## HiC_scaffold_66_34138981  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_66_34139020  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_66_34142862  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_67_1404390   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_67_28493665  NA             "0/0"          NA            
## HiC_scaffold_67_30243885  "0/0"          "1|1"          NA            
## HiC_scaffold_67_31511806  NA             "0|1"          "1|1"         
## HiC_scaffold_67_34638092  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_67_37534720  "0/1"          "1/1"          NA            
## HiC_scaffold_67_39679546  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_67_39854918  NA             "0/0"          NA            
## HiC_scaffold_67_39860738  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_67_40331656  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_67_40824747  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_68_3438132   "0|1"          "1|1"          "1|1"         
## HiC_scaffold_68_3438133   "0|1"          "1|1"          "1|1"         
## HiC_scaffold_68_11206902  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_68_32770607  "0/0"          "0|1"          "0/1"         
## HiC_scaffold_68_34016823  "1/1"          "0/0"          "2|2"         
## HiC_scaffold_68_34020019  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_68_40296057  "1|1"          NA             NA            
## HiC_scaffold_68_40296059  "1|1"          NA             NA            
## HiC_scaffold_68_65001879  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_69_23311147  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_69_27351303  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_69_29437208  "1/1"          "0|1"          "1|1"         
## HiC_scaffold_69_33699381  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_69_40194698  NA             "1/1"          NA            
## HiC_scaffold_69_48273575  NA             "1/1"          "1/1"         
## HiC_scaffold_69_48348026  "0|1"          "0/0"          NA            
## HiC_scaffold_69_48348034  "0|1"          "1|1"          NA            
## HiC_scaffold_69_49563252  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_69_49593952  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_69_49859037  "0/0"          "1|1"          "0|1"         
## HiC_scaffold_69_51271238  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_69_51529836  "0/0"          "1/1"          NA            
## HiC_scaffold_69_57313650  "0|1"          "1/1"          "1/1"         
## HiC_scaffold_69_57359194  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_6951_523650  "0/1"          NA             "0/0"         
## HiC_scaffold_6951_897126  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_6951_1134482 NA             "0/1"          "1|1"         
## HiC_scaffold_6951_2484960 "0/0"          "1/1"          "0/0"         
## HiC_scaffold_6951_3301273 "1|1"          NA             "1/1"         
## HiC_scaffold_6951_3314609 NA             NA             "1/1"         
## HiC_scaffold_6951_3945993 "0/0"          "1|1"          "0/0"         
## HiC_scaffold_6958_218293  "0/2"          "0/0"          "0/0"         
## HiC_scaffold_6958_449143  NA             "1/1"          "1/1"         
## HiC_scaffold_7_351023     "0/0"          "0/0"          "1/1"         
## HiC_scaffold_7_488024     "0/0"          "1|1"          "0/0"         
## HiC_scaffold_7_492663     "1/1"          "1/1"          "1/1"         
## HiC_scaffold_7_693567     "1|1"          "0/0"          NA            
## HiC_scaffold_7_2379128    "0/1"          "1/1"          NA            
## HiC_scaffold_7_3087721    "1/1"          "0/1"          NA            
## HiC_scaffold_7_3394880    "0/0"          "1/1"          "0/0"         
## HiC_scaffold_7_22247106   "0/0"          "1|1"          NA            
## HiC_scaffold_70_4632611   "0/1"          "0|1"          "0/0"         
## HiC_scaffold_70_14042778  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_71_410844    "0/0"          "1|1"          "0|1"         
## HiC_scaffold_71_1753451   "0/1"          "1/1"          "0/0"         
## HiC_scaffold_71_2283682   "1|1"          "0|1"          NA            
## HiC_scaffold_71_3439685   "1/2"          "0/0"          "0/0"         
## HiC_scaffold_71_17850462  "1/1"          "1/1"          NA            
## HiC_scaffold_71_20588314  "0|1"          "0/0"          "1|1"         
## HiC_scaffold_71_25465351  "0|1"          NA             "1|1"         
## HiC_scaffold_71_25465352  "0|1"          NA             "1|1"         
## HiC_scaffold_71_26356062  NA             "0/0"          "0/1"         
## HiC_scaffold_72_11785096  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_72_17285854  "1/1"          "0/0"          NA            
## HiC_scaffold_72_23704999  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_72_24465318  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_72_30457277  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_72_32068649  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_72_35058295  "0/0"          "1/1"          "0/1"         
## HiC_scaffold_72_36024997  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_72_37135067  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_72_38410141  NA             "1/1"          "1/1"         
## HiC_scaffold_72_38448056  "0/0"          "0/0"          NA            
## HiC_scaffold_72_41412511  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_73_2192629   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_73_2920208   "1|1"          NA             "0/0"         
## HiC_scaffold_73_4522493   "0/0"          "1/1"          "1/1"         
## HiC_scaffold_73_4748625   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_73_5839336   "1/1"          "1/1"          NA            
## HiC_scaffold_73_9338582   "0/1"          "0/1"          NA            
## HiC_scaffold_73_27393859  "0/1"          "0/1"          NA            
## HiC_scaffold_74_14235619  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_74_14515598  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_74_15116121  NA             NA             NA            
## HiC_scaffold_74_17233613  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_74_17725340  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_74_18418135  "0/0"          NA             NA            
## HiC_scaffold_74_18418138  "0/0"          "0/0"          NA            
## HiC_scaffold_74_21254425  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_74_22261065  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_74_47132519  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_74_50979096  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_74_51060549  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_74_53256803  NA             "1/1"          "0/0"         
## HiC_scaffold_74_55464169  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_74_55515512  "0/1"          "0/1"          "1/1"         
## HiC_scaffold_74_55999260  NA             "0/0"          "1|1"         
## HiC_scaffold_74_57404902  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_74_58181927  "1|1"          "0/1"          "0/0"         
## HiC_scaffold_74_58198600  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_74_63060195  NA             "1/1"          "1/1"         
## HiC_scaffold_75_5345466   "0/0"          NA             "1|1"         
## HiC_scaffold_75_5346522   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_75_5346535   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_75_9850973   "0/0"          "1/1"          "1|1"         
## HiC_scaffold_76_27149820  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_76_31582908  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_76_31792815  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_76_35352820  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_76_57782171  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_76_59862401  NA             "1|1"          "0/0"         
## HiC_scaffold_76_61095594  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_76_65496128  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_76_68965847  "0/1"          "0/1"          "1/1"         
## HiC_scaffold_76_68966411  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_76_69823482  "0/1"          "1/1"          "0/0"         
## HiC_scaffold_76_73343841  "1/1"          "0/0"          NA            
## HiC_scaffold_77_3598274   NA             "0/0"          "0|1"         
## HiC_scaffold_77_6982137   "0/0"          "0/1"          "0/0"         
## HiC_scaffold_77_11021994  "1/1"          "0/1"          "0/1"         
## HiC_scaffold_77_13608165  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_77_16888594  NA             "0/1"          "0/1"         
## HiC_scaffold_77_16888623  NA             "0/0"          "0|1"         
## HiC_scaffold_77_16889448  NA             "0/1"          "0/0"         
## HiC_scaffold_77_39784685  "0|1"          "0/0"          "1|1"         
## HiC_scaffold_77_44375866  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_77_45385370  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_78_5719919   NA             "1/1"          "0/1"         
## HiC_scaffold_78_11353297  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_78_27316392  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_78_48124809  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_78_48124826  "1/1"          NA             "0/0"         
## HiC_scaffold_78_48126176  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_78_48279096  "1|1"          "0/0"          NA            
## HiC_scaffold_78_48434558  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_78_49759181  NA             "1|1"          "0|1"         
## HiC_scaffold_78_49759192  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_78_49759215  NA             NA             "1/1"         
## HiC_scaffold_78_51364025  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_78_55395445  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_78_59610866  "0/1"          "0/1"          "1/1"         
## HiC_scaffold_78_62136661  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_79_1643780   "0/1"          "0/1"          "1/1"         
## HiC_scaffold_79_2519178   "0/0"          "1/1"          "1|1"         
## HiC_scaffold_79_2858100   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_79_3922454   "1/1"          "0/0"          NA            
## HiC_scaffold_79_4127878   "0/0"          NA             "0/0"         
## HiC_scaffold_79_4543693   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_79_11507678  "1|1"          "1/1"          "0/0"         
## HiC_scaffold_79_12618812  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_79_14185404  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_79_17120237  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_79_17120254  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_79_35551507  NA             "1|1"          "1|1"         
## HiC_scaffold_79_35551543  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_79_38927423  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_79_42623307  "0/1"          "1|1"          "1|1"         
## HiC_scaffold_79_43179786  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_79_43180099  "1/1"          "0/0"          NA            
## HiC_scaffold_79_43828078  "0|1"          NA             "0/0"         
## HiC_scaffold_79_43872513  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_79_44627215  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_79_50772769  "0/0"          "0|1"          NA            
## HiC_scaffold_79_55468575  NA             "0/1"          "0/0"         
## HiC_scaffold_79_55816114  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_79_59915784  "1/1"          "0/1"          "0/1"         
## HiC_scaffold_79_60165298  NA             "0|1"          "0/0"         
## HiC_scaffold_79_60165305  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_79_69145556  "0/0"          "0/2"          "0/0"         
## HiC_scaffold_79_70208305  "0|1"          "0|1"          "0/0"         
## HiC_scaffold_79_73412292  "0/0"          "0/0"          "2/2"         
## HiC_scaffold_79_73416663  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_79_73416688  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_79_76863102  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_79_81279649  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_79_81499990  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_79_82319836  "0/0"          "0|1"          "1|1"         
## HiC_scaffold_79_82319849  "1/1"          "0|1"          "1|1"         
## HiC_scaffold_79_83163707  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_79_86283512  "1/1"          "0/0"          NA            
## HiC_scaffold_79_87123758  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_79_88362889  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_79_88599431  NA             "0/1"          NA            
## HiC_scaffold_79_89322919  NA             "1/1"          "0/0"         
## HiC_scaffold_79_89331918  NA             "0/0"          "1|1"         
## HiC_scaffold_79_91340958  NA             "0/0"          "1/1"         
## HiC_scaffold_8_13649836   "1|1"          "0/1"          "1|1"         
## HiC_scaffold_8_13650752   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_8_23818233   NA             "0/1"          "0/1"         
## HiC_scaffold_8_24123972   "0/1"          "1|1"          "1|1"         
## HiC_scaffold_8_24230791   "0/0"          "1|1"          "0/1"         
## HiC_scaffold_8_24588423   "0/0"          "0|2"          "0|2"         
## HiC_scaffold_8_25348483   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_8_25421933   "0|1"          "1/1"          "0/0"         
## HiC_scaffold_8_25772942   "0/1"          "0/0"          NA            
## HiC_scaffold_8_26289589   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_8_27602740   NA             "0/1"          NA            
## HiC_scaffold_8_28159063   NA             "1/1"          "0/0"         
## HiC_scaffold_8_30829320   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_8_31044084   NA             "0/1"          "1|1"         
## HiC_scaffold_8_31415507   "0/0"          "0/1"          "0/0"         
## HiC_scaffold_8_32594682   "1|1"          "0/0"          "1|1"         
## HiC_scaffold_80_3617847   "1/1"          "1|1"          "1|1"         
## HiC_scaffold_80_5758183   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_80_6760006   "1|1"          "0/0"          "1|1"         
## HiC_scaffold_80_6760037   "1/1"          "0/0"          "1/1"         
## HiC_scaffold_80_7772622   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_80_7919533   "0/1"          "0/0"          "0/1"         
## HiC_scaffold_80_8110052   "1|1"          "0/1"          "0/1"         
## HiC_scaffold_80_8193366   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_80_8625784   NA             "1/1"          "1/1"         
## HiC_scaffold_80_8912846   "0/1"          "0/0"          "1/1"         
## HiC_scaffold_80_9544102   NA             "0/0"          "1/1"         
## HiC_scaffold_80_10770701  "0/1"          "0/1"          "1/1"         
## HiC_scaffold_80_11590146  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_80_16953653  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_80_18938832  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_80_19015946  "1/1"          "0/0"          NA            
## HiC_scaffold_80_19404001  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_80_25346708  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_80_37479851  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_80_37507516  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_81_1187192   "0/0"          "1/1"          "0/1"         
## HiC_scaffold_81_2689826   NA             "0/0"          "1|1"         
## HiC_scaffold_81_2690751   NA             "0/0"          "0/0"         
## HiC_scaffold_81_6614123   "0/0"          "0/1"          "0/1"         
## HiC_scaffold_81_7836855   "1/1"          "0/0"          "0/0"         
## HiC_scaffold_81_10334868  "0/0"          "0/0"          NA            
## HiC_scaffold_81_10458752  "0/1"          "1/1"          "0/1"         
## HiC_scaffold_81_17515538  "1|1"          "0/1"          "1/1"         
## HiC_scaffold_81_40271282  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_81_40271294  "0|1"          "1/1"          "1/1"         
## HiC_scaffold_81_41096427  "0/0"          "0|1"          "0/0"         
## HiC_scaffold_81_41096444  NA             "0|1"          "0/0"         
## HiC_scaffold_81_43820595  NA             "0/0"          "0/0"         
## HiC_scaffold_81_43820732  NA             "0/0"          "0/0"         
## HiC_scaffold_81_43854278  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_81_44804862  NA             "1/1"          "0/0"         
## HiC_scaffold_81_45063428  "0/0"          "0/0"          NA            
## HiC_scaffold_81_45950590  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_81_46714752  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_81_46714759  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_81_47170397  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_81_47628201  "0|1"          "1|1"          "0/0"         
## HiC_scaffold_81_48105216  "1|1"          NA             "0/0"         
## HiC_scaffold_81_48932070  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_81_54050146  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_82_5672063   "1/1"          "1/1"          "1|1"         
## HiC_scaffold_82_8796823   "1|1"          "1|1"          "0|1"         
## HiC_scaffold_82_13450959  "1/1"          "0/1"          "1/1"         
## HiC_scaffold_82_26144442  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_82_26147011  "1|1"          "1|1"          NA            
## HiC_scaffold_82_28907834  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_82_34413793  "0|1"          "1|1"          "0/0"         
## HiC_scaffold_82_34413800  "0|1"          "1|1"          "1/1"         
## HiC_scaffold_82_36173035  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_82_40539273  "1/1"          NA             "0/0"         
## HiC_scaffold_82_41470256  "0/0"          NA             "1/1"         
## HiC_scaffold_83_23993605  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_83_35035961  "0/1"          NA             "0/0"         
## HiC_scaffold_83_43423618  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_83_46920654  "0/1"          "0/1"          "1/1"         
## HiC_scaffold_83_46934197  "1/1"          "0/1"          "1|1"         
## HiC_scaffold_84_356301    "0/1"          "0/0"          "0/0"         
## HiC_scaffold_84_5761817   "0/0"          "0/1"          "0/1"         
## HiC_scaffold_84_5769022   "0/1"          "0/1"          "0/0"         
## HiC_scaffold_84_6288130   "0|1"          "0/0"          "0|1"         
## HiC_scaffold_84_6288141   "1/1"          "1|1"          "0|1"         
## HiC_scaffold_84_6288147   "0/1"          "1|1"          "0/1"         
## HiC_scaffold_84_7069238   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_84_9131309   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_84_10148442  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_84_14659391  "0|1"          "0|1"          "1/1"         
## HiC_scaffold_84_16302752  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_84_18463244  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_84_22909575  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_84_29275266  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_84_31184610  NA             NA             NA            
## HiC_scaffold_84_33093169  NA             "1|1"          "0/0"         
## HiC_scaffold_84_37675180  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_84_39501814  "0/1"          "0/0"          NA            
## HiC_scaffold_84_50169438  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_84_50169445  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_84_51231025  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_85_9792207   "0/0"          "0|1"          "0|1"         
## HiC_scaffold_85_11784233  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_85_11911022  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_85_11911142  "1/1"          "1/1"          "0/1"         
## HiC_scaffold_85_11913828  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_85_11913831  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_85_12353081  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_85_12414551  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_85_13043967  "1|1"          "0/0"          "0|1"         
## HiC_scaffold_85_13221888  NA             "1/1"          "0/1"         
## HiC_scaffold_85_27008863  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_85_28992264  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_85_28992268  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_85_64310850  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_85_65135112  NA             NA             "0/0"         
## HiC_scaffold_85_65563529  "0/1"          "0/0"          "1/1"         
## HiC_scaffold_86_1949664   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_86_5340423   "1/1"          "0/1"          "0/0"         
## HiC_scaffold_86_5483991   "0/1"          "0/0"          "0/1"         
## HiC_scaffold_86_8928469   "1|1"          NA             "1/1"         
## HiC_scaffold_86_23727924  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_86_24825818  "1|1"          "0/1"          "1|1"         
## HiC_scaffold_86_25333718  "1/1"          NA             "1/1"         
## HiC_scaffold_86_29668168  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_86_30914243  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_86_32040320  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_86_32040329  "0|1"          "0/0"          "0/0"         
## HiC_scaffold_86_32125061  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_86_32144758  NA             "0/0"          "1/1"         
## HiC_scaffold_86_32153692  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_86_32534129  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_86_32605768  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_86_36355399  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_86_36357265  "0/1"          "1/1"          NA            
## HiC_scaffold_87_1253643   NA             "1/1"          "0/0"         
## HiC_scaffold_87_2137958   "0/1"          "1/1"          "0/1"         
## HiC_scaffold_87_3980100   NA             "1/1"          "0/0"         
## HiC_scaffold_87_4395923   "0/1"          "0/1"          "0/0"         
## HiC_scaffold_87_5489328   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_87_6300441   "0|1"          "0/1"          "0|1"         
## HiC_scaffold_87_16306904  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_87_44780945  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_88_5584327   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_88_7104630   "1|1"          "0/1"          "0/1"         
## HiC_scaffold_88_7104631   "1|1"          "1|1"          "0/1"         
## HiC_scaffold_88_7104638   "1|1"          "1|1"          "0/1"         
## HiC_scaffold_88_7104639   "1|1"          "1|1"          "1/1"         
## HiC_scaffold_88_7104640   "0/1"          "1|1"          "0/1"         
## HiC_scaffold_88_7479340   "0/0"          "0|1"          "0|1"         
## HiC_scaffold_88_8773607   "0/0"          "1|1"          "1/1"         
## HiC_scaffold_88_9883678   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_88_10878718  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_88_19365116  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_88_20477349  NA             "1/1"          "1/1"         
## HiC_scaffold_88_20557885  "1|1"          "0/1"          "1/1"         
## HiC_scaffold_89_675045    "1/1"          "1/1"          "0/0"         
## HiC_scaffold_89_2815845   "0/0"          "0/0"          "0|2"         
## HiC_scaffold_89_2843940   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_89_3018830   "1/1"          "1|1"          "1|1"         
## HiC_scaffold_89_13745506  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_89_30006907  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_89_36509388  "0/0"          "1|1"          "0/1"         
## HiC_scaffold_89_38703735  "0/0"          NA             NA            
## HiC_scaffold_89_38764895  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_89_42052609  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_89_42054991  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_89_44306958  "0/1"          "1/1"          "0/1"         
## HiC_scaffold_89_44338206  "1/1"          "0/1"          "0/0"         
## HiC_scaffold_89_45298973  "1/1"          NA             "1/1"         
## HiC_scaffold_9_3529921    "1/1"          "0/0"          "1|1"         
## HiC_scaffold_9_5660454    "0|1"          "0|1"          "0/0"         
## HiC_scaffold_9_5660461    "1|1"          "1/1"          "1/1"         
## HiC_scaffold_9_5854070    "1/1"          "1/1"          "1/1"         
## HiC_scaffold_9_6142415    "0|1"          "1|1"          "0|1"         
## HiC_scaffold_9_6142436    "0|1"          "1|1"          "0|1"         
## HiC_scaffold_9_6143781    "1/1"          "1/1"          "0/1"         
## HiC_scaffold_9_6654825    "1/1"          "0/0"          "1/1"         
## HiC_scaffold_9_7094545    "0/1"          NA             "1|1"         
## HiC_scaffold_9_7100208    "0/0"          "1|1"          "1|1"         
## HiC_scaffold_9_7109988    NA             "0/0"          "1/1"         
## HiC_scaffold_9_7111922    NA             "1|1"          "1|1"         
## HiC_scaffold_9_8235781    "0/0"          "1/1"          "1/1"         
## HiC_scaffold_9_8279558    "1/1"          "1/1"          "1/1"         
## HiC_scaffold_9_15679481   "0/1"          "1|1"          "0/0"         
## HiC_scaffold_9_18082611   "0/0"          "0/0"          NA            
## HiC_scaffold_9_18090830   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_9_30240531   NA             "1/1"          "1/1"         
## HiC_scaffold_90_10418696  NA             "0/0"          "0/0"         
## HiC_scaffold_90_11470224  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_90_13593319  "0/0"          "0/0"          "0/1"         
## HiC_scaffold_90_16260161  "0/0"          "0/1"          "0/1"         
## HiC_scaffold_90_22325499  NA             "0/1"          "1|1"         
## HiC_scaffold_90_23574204  "0/0"          NA             "0/0"         
## HiC_scaffold_90_23609908  "1|1"          "0/0"          "0/1"         
## HiC_scaffold_90_23623078  "0/1"          "0/1"          "1|1"         
## HiC_scaffold_90_23626883  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_90_23812663  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_90_25939283  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_90_25985714  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_90_30751272  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_90_31232025  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_90_31245699  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_90_31527975  NA             "0/0"          "0/1"         
## HiC_scaffold_90_31546172  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_90_38511996  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_90_38511999  "1|1"          "0/0"          "1|1"         
## HiC_scaffold_90_38517279  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_90_40624104  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_91_5644765   "1|1"          "1|1"          "0/0"         
## HiC_scaffold_91_5867214   "0|1"          "0/0"          "0/0"         
## HiC_scaffold_91_5867226   "0|1"          "0/0"          "0/0"         
## HiC_scaffold_91_7704263   "0/0"          "1|1"          "1|1"         
## HiC_scaffold_91_7871360   "1/1"          "0/0"          NA            
## HiC_scaffold_91_8538014   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_91_13230485  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_91_28696118  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_91_28696625  "1|1"          "1/1"          "1|1"         
## HiC_scaffold_91_42177482  "1|1"          NA             "0/0"         
## HiC_scaffold_91_46813640  "0/0"          "0|2"          "2|2"         
## HiC_scaffold_92_23783035  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_92_23783036  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_92_24712793  "0/0"          "0/1"          NA            
## HiC_scaffold_92_28698258  "0/0"          NA             "0|1"         
## HiC_scaffold_92_40691582  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_92_43967712  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_92_47147572  "1|1"          "0|1"          "0/0"         
## HiC_scaffold_92_49042714  "0/0"          "0|0"          "1|1"         
## HiC_scaffold_92_49042715  "0/0"          "0|0"          "1|1"         
## HiC_scaffold_92_53634002  "0/1"          "1/1"          "1|1"         
## HiC_scaffold_92_58211868  "0/1"          "1|1"          NA            
## HiC_scaffold_92_60114155  "0/1"          "0/0"          "0/0"         
## HiC_scaffold_92_63603483  "1/1"          "0|1"          "0/0"         
## HiC_scaffold_92_64797225  NA             "0/0"          NA            
## HiC_scaffold_92_68367476  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_93_1912167   NA             NA             "0/0"         
## HiC_scaffold_93_2485978   "0/0"          "0/1"          NA            
## HiC_scaffold_93_3227638   "0/0"          "0/0"          "1/1"         
## HiC_scaffold_93_3227641   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_93_13971208  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_93_13987080  "1/1"          "0/0"          "1/1"         
## HiC_scaffold_93_21125468  "0/1"          NA             NA            
## HiC_scaffold_93_21845293  NA             "0/0"          "0/1"         
## HiC_scaffold_93_21845310  NA             "1|1"          "0/0"         
## HiC_scaffold_93_21846342  "0/0"          "0/0"          "1|1"         
## HiC_scaffold_93_21846356  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_93_22589723  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_93_22619278  "0/0"          "1/1"          NA            
## HiC_scaffold_93_22631258  NA             "0/0"          "1|1"         
## HiC_scaffold_93_22631266  NA             "0/0"          "1|1"         
## HiC_scaffold_94_3110102   "0/1"          "1/1"          "1/1"         
## HiC_scaffold_94_3205919   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_94_9023846   "0/0"          "0/1"          "1/1"         
## HiC_scaffold_94_11572820  "1/1"          NA             "1/1"         
## HiC_scaffold_94_12368532  "1/1"          "1/1"          "0/0"         
## HiC_scaffold_94_42179418  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_94_42179519  NA             "0/0"          "0/0"         
## HiC_scaffold_94_51646206  "0/0"          "0/1"          "0/0"         
## HiC_scaffold_94_52781289  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_94_53790035  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_94_53792738  "0/0"          "0/0"          "0/0"         
## HiC_scaffold_94_56768905  "0/0"          "1|1"          "1|1"         
## HiC_scaffold_946_81276    "0/0"          "1/1"          "1/1"         
## HiC_scaffold_95_3189690   "1/1"          "1/1"          "0/1"         
## HiC_scaffold_95_4397298   "1|1"          "1|1"          "1|1"         
## HiC_scaffold_95_9469157   "1|1"          "0|1"          "0/0"         
## HiC_scaffold_95_10641411  "0/0"          "0/1"          "1/1"         
## HiC_scaffold_95_10949821  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_95_12993394  "0/0"          "0|1"          "0/0"         
## HiC_scaffold_95_15515793  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_95_15608785  "1|1"          "0/0"          "0/0"         
## HiC_scaffold_95_15609137  "1/1"          "0/0"          "0/0"         
## HiC_scaffold_95_16295316  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_95_22656165  "0|1"          "0/0"          "0|1"         
## HiC_scaffold_95_25885727  "0/1"          "0/1"          "0/1"         
## HiC_scaffold_96_10460019  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_96_27155785  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_96_37939434  "0/0"          "0|1"          "0/0"         
## HiC_scaffold_96_51115048  "0/0"          "1/1"          "1/1"         
## HiC_scaffold_96_51116511  NA             "1/1"          "1/1"         
## HiC_scaffold_96_51915040  "0/0"          "0|1"          "0/0"         
## HiC_scaffold_96_52681287  "0/0"          "0/1"          NA            
## HiC_scaffold_96_53276519  "0/1"          "0/1"          "0/0"         
## HiC_scaffold_97_1736926   "0/0"          "0|1"          "1|1"         
## HiC_scaffold_97_1736994   "0/0"          "0/1"          "1|1"         
## HiC_scaffold_97_3863543   "0/0"          "1/1"          "0/0"         
## HiC_scaffold_97_4200445   "0/0"          "0/1"          "0/0"         
## HiC_scaffold_97_4799162   "1/1"          "1/1"          "0/0"         
## HiC_scaffold_97_5027892   "0/0"          "1/1"          "1/1"         
## HiC_scaffold_97_8007933   "0/0"          "1|1"          "0/0"         
## HiC_scaffold_97_17997210  "0/0"          "0/0"          "0|1"         
## HiC_scaffold_97_18604647  "1/1"          "1/1"          "1/1"         
## HiC_scaffold_97_20239636  "0/1"          "0/1"          "0/1"         
## HiC_scaffold_98_15154096  "0/0"          NA             "0/0"         
## HiC_scaffold_98_22342667  "0/0"          "1|1"          "0/0"         
## HiC_scaffold_98_22634293  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_98_22634294  "1|1"          "1|1"          "0/0"         
## HiC_scaffold_98_22721138  "0|1"          "1/1"          "1/1"         
## HiC_scaffold_98_22869378  "0/0"          "0/0"          "1/1"         
## HiC_scaffold_98_24108405  "0/0"          "0/0"          NA            
## HiC_scaffold_98_27359592  "0/1"          "1/1"          "1/1"         
## HiC_scaffold_98_28549834  "0/1"          "0/1"          "1/1"         
## HiC_scaffold_98_28867520  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_98_28867524  "1|1"          "1|1"          "1|1"         
## HiC_scaffold_98_29431717  "0/1"          "0/1"          "1|1"         
## HiC_scaffold_98_29675109  "0/0"          "1/1"          "0/0"         
## HiC_scaffold_99_1163244   "0/0"          "0/0"          NA            
## HiC_scaffold_99_1451611   "0/0"          "0/1"          "0/0"         
## HiC_scaffold_99_2021961   "0/0"          "0/0"          "0/0"         
## HiC_scaffold_99_5134392   "0/1"          "0/1"          "1/1"         
## HiC_scaffold_99_5239109   "1/1"          "1/1"          "1/1"         
## HiC_scaffold_99_6917738   "1|1"          "0/0"          "1|1"         
## HiC_scaffold_99_11221970  "0/0"          "0|1"          "0/0"         
## HiC_scaffold_99_25982503  "0/0"          "1/1"          "1/1"         
##                           Tank_2_Crab_1 Tank_2_Crab_2 Tank_2_Crab_3
## HiC_scaffold_1_2523394    "1/1"         "0/1"         "0/0"        
## HiC_scaffold_1_2542157    "0/1"         NA            "1/1"        
## HiC_scaffold_1_2647806    "1/1"         "1/1"         "1/1"        
## HiC_scaffold_1_2970226    NA            NA            "0/0"        
## HiC_scaffold_1_3329447    "2|2"         "0/0"         "0/0"        
## HiC_scaffold_1_3795100    "0/0"         NA            NA           
## HiC_scaffold_10_2221345   "1|1"         NA            NA           
## HiC_scaffold_10_2299490   "0|1"         NA            "1|1"        
## HiC_scaffold_10_2565301   NA            "0/0"         "1/1"        
## HiC_scaffold_10_3864355   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_10_4319900   "1|1"         NA            "1|1"        
## HiC_scaffold_10_4319907   "1|1"         NA            "1|1"        
## HiC_scaffold_10_5404579   NA            "0/0"         "1/1"        
## HiC_scaffold_10_5843373   NA            "0/0"         "0/0"        
## HiC_scaffold_100_854947   "0/0"         NA            "0/0"        
## HiC_scaffold_100_1070817  "0/0"         NA            "0/0"        
## HiC_scaffold_100_2002094  "0/0"         "0/0"         "2|2"        
## HiC_scaffold_100_2002097  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_100_2010331  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_100_5186498  NA            NA            "1/1"        
## HiC_scaffold_100_5828477  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_100_6470419  NA            NA            "0/0"        
## HiC_scaffold_100_6739225  "0/1"         "1/1"         NA           
## HiC_scaffold_100_6739258  "0/0"         "1/1"         "1|1"        
## HiC_scaffold_100_6739264  "0/0"         "1/1"         "1|1"        
## HiC_scaffold_100_6907177  NA            "0/0"         "0/0"        
## HiC_scaffold_100_8384481  "0/0"         "1/1"         "0|1"        
## HiC_scaffold_100_8384495  "0/0"         "0/0"         "0|1"        
## HiC_scaffold_100_9451470  "0/0"         "0/0"         NA           
## HiC_scaffold_100_10464574 "1/1"         NA            "0/0"        
## HiC_scaffold_100_11934792 NA            "1|1"         "0/0"        
## HiC_scaffold_100_11980177 "0|1"         "1/1"         "1/1"        
## HiC_scaffold_100_18465760 "0/0"         "0/0"         "0/0"        
## HiC_scaffold_100_18465762 "0/0"         "0/0"         "0/0"        
## HiC_scaffold_100_18466205 "0/0"         "2/2"         "0/0"        
## HiC_scaffold_100_31738115 NA            "0/0"         NA           
## HiC_scaffold_100_44227362 "1/1"         "0/0"         "0/1"        
## HiC_scaffold_101_12808961 "0/0"         "0/0"         NA           
## HiC_scaffold_101_13897149 NA            "1/1"         "0/0"        
## HiC_scaffold_101_18337279 "1|1"         "0/0"         "1|1"        
## HiC_scaffold_101_20800167 NA            NA            NA           
## HiC_scaffold_102_2260041  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_102_8734519  "0/0"         NA            "1|1"        
## HiC_scaffold_102_10233999 "1|1"         "0/0"         "1|1"        
## HiC_scaffold_102_11446042 "0/0"         "0/0"         "0/0"        
## HiC_scaffold_102_15918694 NA            "1/1"         "1/1"        
## HiC_scaffold_102_15935667 NA            "0/0"         "0/0"        
## HiC_scaffold_102_17442643 "1/1"         "1/1"         "0/1"        
## HiC_scaffold_102_17608969 "0/0"         "1/1"         NA           
## HiC_scaffold_102_20180185 NA            NA            "1/1"        
## HiC_scaffold_102_24788723 "0/1"         NA            "0/0"        
## HiC_scaffold_102_25423729 NA            "1|1"         "0/0"        
## HiC_scaffold_102_39755142 "1/1"         "0/0"         "0/0"        
## HiC_scaffold_102_52046978 "1/1"         NA            "0/0"        
## HiC_scaffold_1027_34152   NA            "0/0"         "0/0"        
## HiC_scaffold_103_601715   "1/1"         "1/1"         "0/0"        
## HiC_scaffold_103_2891384  NA            "1/1"         "1/1"        
## HiC_scaffold_103_8191270  "0/0"         "0/1"         NA           
## HiC_scaffold_103_9521272  NA            "0/0"         NA           
## HiC_scaffold_103_14768909 "0|1"         "1|1"         NA           
## HiC_scaffold_103_19312119 NA            "1|1"         NA           
## HiC_scaffold_103_21284866 "0/0"         "1/1"         "0/0"        
## HiC_scaffold_103_31428453 "1|1"         "1|1"         "1|1"        
## HiC_scaffold_103_42567396 NA            "0/0"         "1/1"        
## HiC_scaffold_103_45921571 NA            "0/0"         NA           
## HiC_scaffold_103_45921573 "0/0"         "0/0"         NA           
## HiC_scaffold_103_49592022 "1|1"         "0/0"         NA           
## HiC_scaffold_103_49620132 NA            "1|1"         "0/0"        
## HiC_scaffold_103_50440915 "0/0"         "0/0"         "0/0"        
## HiC_scaffold_103_51944137 "1/1"         NA            "0/0"        
## HiC_scaffold_103_54308582 "1|1"         "1|1"         "1|1"        
## HiC_scaffold_103_54424067 "1|1"         NA            "0/0"        
## HiC_scaffold_103_56932900 "1/1"         "1/1"         NA           
## HiC_scaffold_103_57470264 "1|1"         "1|1"         NA           
## HiC_scaffold_104_7771140  NA            NA            "1/1"        
## HiC_scaffold_104_9103028  NA            "0/0"         "1/1"        
## HiC_scaffold_104_10633168 "0/1"         "0/1"         "0/0"        
## HiC_scaffold_104_18917031 "0/1"         NA            "0/0"        
## HiC_scaffold_104_20851902 "0/1"         "0/0"         NA           
## HiC_scaffold_104_24451803 "1/1"         "0/0"         NA           
## HiC_scaffold_104_28597688 "0/1"         "1/1"         NA           
## HiC_scaffold_104_40927999 "0/1"         NA            NA           
## HiC_scaffold_104_46490074 NA            "1/1"         "0/0"        
## HiC_scaffold_104_49759053 "0/0"         "0/0"         NA           
## HiC_scaffold_104_57267896 "1/1"         "0/0"         "1/1"        
## HiC_scaffold_104_62570010 NA            "1/1"         NA           
## HiC_scaffold_11_32804173  NA            NA            "0/0"        
## HiC_scaffold_11_34516508  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_11_35332996  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_11_35904027  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_11_41539793  "0/0"         "0/0"         NA           
## HiC_scaffold_11_41604080  "1/1"         NA            "1/1"        
## HiC_scaffold_11_42855323  NA            "0/0"         "0/1"        
## HiC_scaffold_11_45339409  "1/1"         NA            "0/0"        
## HiC_scaffold_11_45339410  "0/0"         NA            "0/0"        
## HiC_scaffold_11_47544035  "1/1"         "1/1"         "1|1"        
## HiC_scaffold_12_7515164   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_12_12640100  "1/1"         NA            "0/0"        
## HiC_scaffold_12_12826705  "0/0"         "0/1"         NA           
## HiC_scaffold_12_14899285  "0/0"         "0/0"         NA           
## HiC_scaffold_12_17465672  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_12_22770710  "0/0"         "0/0"         NA           
## HiC_scaffold_12_32318964  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_12_35136373  "0|1"         NA            "0/0"        
## HiC_scaffold_12_40687860  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_13_2938168   "0/1"         NA            "1/1"        
## HiC_scaffold_13_20350974  "1/1"         NA            NA           
## HiC_scaffold_13_27759554  "1/1"         "1/1"         NA           
## HiC_scaffold_13_28146828  "0|2"         "0|1"         "0/0"        
## HiC_scaffold_13_28146830  "0|2"         "0|0"         "0/0"        
## HiC_scaffold_13_28925343  "1/1"         "0/2"         "1/1"        
## HiC_scaffold_13_31913129  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_13_32078924  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_13_33864805  NA            NA            "1/1"        
## HiC_scaffold_13_34892542  "0/0"         "0/0"         NA           
## HiC_scaffold_13_34893103  "1|1"         NA            NA           
## HiC_scaffold_13_35762551  "0|1"         NA            "0|1"        
## HiC_scaffold_13_35881745  "1|1"         "1|1"         NA           
## HiC_scaffold_13_35881749  "1|1"         "1|1"         NA           
## HiC_scaffold_14_3843214   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_14_25884262  "0/1"         "1|2"         "0/2"        
## HiC_scaffold_14_27050415  NA            "1/1"         "1/1"        
## HiC_scaffold_14_27118495  "0/0"         NA            "1/1"        
## HiC_scaffold_14_27277222  NA            "2|2"         "0/0"        
## HiC_scaffold_14_29215814  NA            "0/0"         NA           
## HiC_scaffold_15_2460398   "1|1"         "0|1"         "1|1"        
## HiC_scaffold_15_2462980   NA            NA            NA           
## HiC_scaffold_15_2467289   "0/0"         NA            "1/1"        
## HiC_scaffold_15_5669141   NA            "0/0"         "0/0"        
## HiC_scaffold_15_13700694  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_15_17825275  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_15_19938475  NA            "1/1"         "1/1"        
## HiC_scaffold_15_23865956  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_15_28837774  "1|1"         "1/1"         "0/0"        
## HiC_scaffold_15_28837810  "0/0"         "0/0"         NA           
## HiC_scaffold_15_28837823  "0/0"         "0/0"         NA           
## HiC_scaffold_15_28837835  "0/0"         "0/0"         NA           
## HiC_scaffold_15_28837841  "0/0"         "0/0"         NA           
## HiC_scaffold_15_28837854  "1/1"         NA            NA           
## HiC_scaffold_15_34827832  "0/0"         NA            NA           
## HiC_scaffold_15_34893807  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_15_35327348  NA            "0/0"         "0/0"        
## HiC_scaffold_15_42161112  "0/0"         NA            NA           
## HiC_scaffold_15_42164926  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_15_42164946  NA            "0/0"         "0/1"        
## HiC_scaffold_15_46289572  NA            NA            "0/0"        
## HiC_scaffold_15_50591576  "0/0"         "1|1"         NA           
## HiC_scaffold_15_50759128  "0/0"         "0/0"         NA           
## HiC_scaffold_15_51188336  "1|1"         NA            NA           
## HiC_scaffold_15_54726640  NA            NA            "1/1"        
## HiC_scaffold_15_54788235  NA            NA            "0/1"        
## HiC_scaffold_15_56162375  "0/0"         NA            "0/0"        
## HiC_scaffold_15_61091106  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_15_61464359  "0/0"         "1/1"         NA           
## HiC_scaffold_15_61510386  "0/0"         NA            "1/1"        
## HiC_scaffold_15_62309788  "0/0"         "0|1"         "1|1"        
## HiC_scaffold_15_62309793  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_15_62771254  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_15_63493927  NA            "1/1"         "1/1"        
## HiC_scaffold_15_64997502  "1/1"         NA            "0/0"        
## HiC_scaffold_15_65007865  "1|1"         "1|1"         NA           
## HiC_scaffold_15_65007879  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_15_66038529  "0/0"         NA            "1/1"        
## HiC_scaffold_15_69811281  "1/1"         NA            "0/0"        
## HiC_scaffold_16_14205925  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_16_30404047  "0|1"         "0/0"         NA           
## HiC_scaffold_16_57413288  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_16_63687578  "0/0"         NA            "0/0"        
## HiC_scaffold_16_74138787  NA            "1/1"         "0/0"        
## HiC_scaffold_16_74140106  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_16_76276015  NA            "1/1"         "0/0"        
## HiC_scaffold_17_11390873  "1|1"         "0/0"         "1/1"        
## HiC_scaffold_17_12551128  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_17_16615612  "0/1"         NA            "0/0"        
## HiC_scaffold_17_18838093  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_17_22801072  "0/1"         "1/1"         NA           
## HiC_scaffold_17_23788599  "0/0"         NA            "0/0"        
## HiC_scaffold_17_29383895  "0|0"         "0/0"         NA           
## HiC_scaffold_17_29618771  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_17_29976139  "0/0"         NA            "1/1"        
## HiC_scaffold_17_31107213  NA            NA            "1/1"        
## HiC_scaffold_17_32493792  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_17_33732050  "1|1"         "1|1"         "1/1"        
## HiC_scaffold_17_33801314  "0/0"         "1|1"         NA           
## HiC_scaffold_17_34081889  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_18_227565    "1/1"         "1/1"         "0/0"        
## HiC_scaffold_18_1213486   "1/1"         NA            "1/1"        
## HiC_scaffold_18_1701312   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_18_3506437   "1/1"         "1/1"         NA           
## HiC_scaffold_18_6304978   "1/1"         "1/1"         "0/0"        
## HiC_scaffold_18_6351493   "1/1"         "1/1"         "0/1"        
## HiC_scaffold_18_6358009   NA            "0/0"         "1|1"        
## HiC_scaffold_18_10770701  "0/0"         NA            "1/1"        
## HiC_scaffold_18_13342858  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_18_20045832  NA            "0/0"         "0/0"        
## HiC_scaffold_18_22682683  "0/1"         "0/0"         "0/1"        
## HiC_scaffold_18_26337790  NA            "1|1"         "0/0"        
## HiC_scaffold_18_48929148  "0/0"         NA            "0/0"        
## HiC_scaffold_18_51490626  "0/0"         NA            "1/1"        
## HiC_scaffold_18_53723137  "0/0"         "1/1"         NA           
## HiC_scaffold_18_54496637  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_18_55294388  "0/0"         NA            "0|1"        
## HiC_scaffold_19_279726    "0/0"         "0/1"         NA           
## HiC_scaffold_19_6426572   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_19_6575887   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_19_7755254   "0/0"         "0/0"         "0/1"        
## HiC_scaffold_19_9301421   "0/0"         NA            "0/1"        
## HiC_scaffold_19_9357388   NA            "1|1"         "1|1"        
## HiC_scaffold_19_9778841   "1/1"         NA            "0/0"        
## HiC_scaffold_19_10928976  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_19_10928980  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_19_10928982  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_19_11106347  "0|1"         "0/0"         "0/0"        
## HiC_scaffold_19_11590139  NA            "0/0"         NA           
## HiC_scaffold_19_11665300  "0/1"         NA            NA           
## HiC_scaffold_19_14793640  "0/0"         "0/0"         NA           
## HiC_scaffold_19_22112743  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_19_25473671  NA            NA            "1/1"        
## HiC_scaffold_19_25473692  NA            NA            "0/1"        
## HiC_scaffold_19_28110829  "0/0"         NA            "1|1"        
## HiC_scaffold_19_28465002  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_19_28465167  "0|1"         "1|1"         "1/1"        
## HiC_scaffold_19_30106869  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_19_52538858  NA            "1/1"         "1/1"        
## HiC_scaffold_19_52596196  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_19_53482993  "0/1"         "0/0"         NA           
## HiC_scaffold_19_54312637  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_19_59345841  "1|1"         NA            "0/0"        
## HiC_scaffold_2_3296144    "1|1"         "1|1"         "1|1"        
## HiC_scaffold_2_3418589    "0/0"         "0/0"         "1/1"        
## HiC_scaffold_2_3864060    "0/0"         "1/1"         "1/1"        
## HiC_scaffold_2_4104755    NA            "0/0"         NA           
## HiC_scaffold_2_4104758    NA            "0/0"         NA           
## HiC_scaffold_2_8316721    "0|0"         NA            NA           
## HiC_scaffold_2_9098999    "0/0"         NA            NA           
## HiC_scaffold_2_10457537   "0/0"         NA            NA           
## HiC_scaffold_2_19048125   "0/0"         NA            NA           
## HiC_scaffold_2_21748201   "1|1"         "1/1"         NA           
## HiC_scaffold_2_33187764   NA            "0/0"         "0/0"        
## HiC_scaffold_2_33187770   NA            "0/0"         "0/0"        
## HiC_scaffold_2_33187959   "0/0"         "0/0"         NA           
## HiC_scaffold_2_41603929   "0/1"         NA            NA           
## HiC_scaffold_2_52233191   "1/1"         "0/0"         NA           
## HiC_scaffold_2_52400748   NA            "0/0"         "1/1"        
## HiC_scaffold_2_52403793   "1|1"         "1|1"         NA           
## HiC_scaffold_2_52799130   "1/1"         "1/1"         "0/0"        
## HiC_scaffold_20_10332897  "1/1"         NA            "0/0"        
## HiC_scaffold_20_17198418  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_20_17915398  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_20_18872955  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_20_19055301  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_20_19150094  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_20_20651022  NA            "1|1"         "0/1"        
## HiC_scaffold_20_22651296  NA            "1/1"         NA           
## HiC_scaffold_21_2009156   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_21_2435648   "0/0"         "0/0"         NA           
## HiC_scaffold_21_7164210   "1|1"         NA            NA           
## HiC_scaffold_21_9786512   "1/1"         "0/0"         NA           
## HiC_scaffold_21_12424922  "1|1"         NA            "1/1"        
## HiC_scaffold_21_17966833  "1/1"         "1/1"         NA           
## HiC_scaffold_21_19025429  "0/1"         NA            "0/0"        
## HiC_scaffold_21_20058318  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_21_20562855  "1|1"         "1|1"         "0|1"        
## HiC_scaffold_21_20661860  "0/1"         "0/0"         NA           
## HiC_scaffold_21_20895395  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_21_21158811  "2|2"         "1|1"         "0/0"        
## HiC_scaffold_21_22250857  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_21_22250866  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_21_22257737  "0/1"         "1|1"         "0/0"        
## HiC_scaffold_21_22644667  "0|1"         NA            "0/0"        
## HiC_scaffold_21_22644673  "0|1"         NA            "0/0"        
## HiC_scaffold_21_22666888  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_21_23905416  "0/0"         NA            "0/0"        
## HiC_scaffold_21_23981651  "0/0"         NA            "0/1"        
## HiC_scaffold_21_24287068  NA            "0/0"         "0/0"        
## HiC_scaffold_21_30798434  "0|1"         "0/0"         "0/1"        
## HiC_scaffold_21_35006232  NA            "1/1"         NA           
## HiC_scaffold_21_35779294  "0/1"         NA            NA           
## HiC_scaffold_22_124910    "0/1"         "0/0"         NA           
## HiC_scaffold_22_751023    NA            "0/0"         "0/0"        
## HiC_scaffold_22_1042644   "0/0"         "0/0"         NA           
## HiC_scaffold_22_1044708   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_22_2174911   NA            "1/1"         "0/0"        
## HiC_scaffold_22_3431122   "0/0"         NA            "0|1"        
## HiC_scaffold_22_3446787   "0|1"         NA            NA           
## HiC_scaffold_22_3451756   "1/1"         "1|1"         "0/0"        
## HiC_scaffold_22_3720435   "0/1"         "0/1"         NA           
## HiC_scaffold_22_4065466   "0/0"         "1|1"         "0/0"        
## HiC_scaffold_22_4739889   "2|2"         "0/0"         NA           
## HiC_scaffold_22_4918263   NA            "1|1"         NA           
## HiC_scaffold_22_5750008   "1/1"         NA            "0/0"        
## HiC_scaffold_22_5769942   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_22_28264522  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_22_28265115  "0/0"         NA            "1/1"        
## HiC_scaffold_22_29205851  "1/2"         "1/1"         "1/1"        
## HiC_scaffold_22_29822340  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_22_30797357  "0/0"         NA            NA           
## HiC_scaffold_22_32042610  NA            NA            "0/0"        
## HiC_scaffold_23_11215327  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_23_27081333  "0/1"         NA            "0/0"        
## HiC_scaffold_23_28672255  "0/1"         NA            NA           
## HiC_scaffold_23_29218828  "0/0"         "0/0"         NA           
## HiC_scaffold_23_32528768  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_23_32669383  "0/1"         NA            "0/1"        
## HiC_scaffold_23_33199663  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_23_33245843  "1/1"         NA            NA           
## HiC_scaffold_23_40824545  "0/0"         "1|1"         "0|1"        
## HiC_scaffold_23_41504669  "0|1"         NA            "1/1"        
## HiC_scaffold_24_16622654  "1/1"         "1/1"         NA           
## HiC_scaffold_24_16622681  "1/1"         "1/1"         NA           
## HiC_scaffold_24_19851560  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_24_20590563  "0/1"         NA            "0/0"        
## HiC_scaffold_24_27745754  "0/1"         NA            "0/0"        
## HiC_scaffold_24_28763699  "1|1"         "1|1"         NA           
## HiC_scaffold_24_28763703  "1|1"         "1|1"         NA           
## HiC_scaffold_25_4135969   "1/1"         NA            "0/0"        
## HiC_scaffold_25_4201677   "0/1"         "1/1"         "0/0"        
## HiC_scaffold_25_5872831   NA            "0/0"         "0/1"        
## HiC_scaffold_25_6879627   NA            "0/0"         "0/0"        
## HiC_scaffold_25_8172813   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_25_9969507   "0/1"         "0|1"         "0/0"        
## HiC_scaffold_25_10691336  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_25_21286462  "0/0"         NA            "1/1"        
## HiC_scaffold_26_4086662   NA            "0/0"         NA           
## HiC_scaffold_26_7539671   "0/0"         NA            NA           
## HiC_scaffold_26_8348511   NA            NA            "0/0"        
## HiC_scaffold_26_9043748   "1|1"         NA            "1|1"        
## HiC_scaffold_26_9045655   NA            "1|1"         "1|1"        
## HiC_scaffold_26_11253181  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_26_17828344  NA            "1/1"         "1/1"        
## HiC_scaffold_26_17932520  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_26_17941459  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_26_17960877  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_26_18284041  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_26_18288701  "1/1"         "1|1"         NA           
## HiC_scaffold_26_18294422  "0/1"         "0|1"         "0/0"        
## HiC_scaffold_26_21307365  NA            "1|1"         NA           
## HiC_scaffold_26_22159924  "0/0"         NA            "1/1"        
## HiC_scaffold_26_22161535  "1/1"         NA            NA           
## HiC_scaffold_26_24794176  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_26_28538113  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_26_29031357  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_26_29163462  "0/1"         "0/0"         NA           
## HiC_scaffold_26_42631018  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_26_42634814  "0/1"         NA            "0/0"        
## HiC_scaffold_26_43483190  "0/0"         NA            "0/1"        
## HiC_scaffold_26_49955889  NA            NA            "1/1"        
## HiC_scaffold_26_58342510  "0/0"         "1|1"         "0/1"        
## HiC_scaffold_27_1496120   "0/0"         "1|1"         "1|1"        
## HiC_scaffold_27_1947057   "0/0"         "1|1"         "0/0"        
## HiC_scaffold_27_2359058   NA            "0/1"         NA           
## HiC_scaffold_27_2699645   NA            NA            "0/0"        
## HiC_scaffold_27_4425475   "0/0"         "1|1"         "1/1"        
## HiC_scaffold_27_7539469   "0/0"         NA            "2|2"        
## HiC_scaffold_27_7777122   NA            NA            "0/0"        
## HiC_scaffold_27_16657070  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_27_24539255  "0/0"         "0/1"         "1|1"        
## HiC_scaffold_27_34642359  NA            "0/0"         "1|1"        
## HiC_scaffold_27_34647277  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_27_35380535  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_27_35383230  NA            "0/0"         NA           
## HiC_scaffold_28_21261390  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_28_24490442  NA            "1/1"         "0/0"        
## HiC_scaffold_28_25601927  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_28_31793968  "0/0"         NA            NA           
## HiC_scaffold_28_32126687  NA            "0/0"         "0/0"        
## HiC_scaffold_28_34779518  "1/1"         NA            NA           
## HiC_scaffold_28_36042491  "0/1"         NA            "1/1"        
## HiC_scaffold_28_36692361  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_28_38672993  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_28_39640526  "0/0"         NA            "0/0"        
## HiC_scaffold_28_40169242  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_28_41059640  "1|1"         NA            "1|1"        
## HiC_scaffold_28_42514830  "0/1"         "1/1"         "0/1"        
## HiC_scaffold_28_42601570  "1/1"         NA            "0/1"        
## HiC_scaffold_28_42601585  "0/0"         NA            "0/0"        
## HiC_scaffold_28_43018803  "0/1"         "0/0"         "0/1"        
## HiC_scaffold_28_43036165  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_29_344317    NA            "0/1"         "0/0"        
## HiC_scaffold_29_3811176   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_29_6073993   NA            NA            "0/0"        
## HiC_scaffold_29_6415222   "0/0"         "0/0"         NA           
## HiC_scaffold_29_8224424   "0/0"         NA            "0/0"        
## HiC_scaffold_29_11153624  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_29_11153712  "1/1"         NA            "0/0"        
## HiC_scaffold_29_11167966  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_29_11491468  "0/0"         "1/1"         NA           
## HiC_scaffold_29_12103558  "0/0"         "1|1"         NA           
## HiC_scaffold_29_14279322  "0/1"         NA            NA           
## HiC_scaffold_29_14913907  "0|1"         NA            "0|1"        
## HiC_scaffold_29_16378276  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_29_20635937  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_29_20636787  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_29_22560215  "1/1"         NA            "0/0"        
## HiC_scaffold_29_22561144  NA            "1/1"         "1/1"        
## HiC_scaffold_29_24017849  NA            NA            "0/0"        
## HiC_scaffold_29_31603590  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_3_21670751   "0/0"         NA            "1/1"        
## HiC_scaffold_3_24747014   NA            "0/1"         "0/0"        
## HiC_scaffold_3_27861792   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_3_28057869   "0/0"         "0/0"         NA           
## HiC_scaffold_3_28441436   "0/0"         NA            NA           
## HiC_scaffold_3_28694380   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_3_31361023   "0/1"         NA            "0/0"        
## HiC_scaffold_3_31960572   NA            NA            "0/0"        
## HiC_scaffold_3_32157169   "0/0"         NA            NA           
## HiC_scaffold_3_32159152   "0/0"         "1/1"         NA           
## HiC_scaffold_3_34124237   NA            "0/0"         "0/0"        
## HiC_scaffold_30_14199802  "0/0"         NA            "0/0"        
## HiC_scaffold_30_16052331  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_30_19914075  NA            "0/1"         "0/1"        
## HiC_scaffold_30_20688783  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_30_21446076  NA            "0/2"         "0/0"        
## HiC_scaffold_30_21598563  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_30_22155728  "0|1"         "0/0"         "0/0"        
## HiC_scaffold_31_687411    "0/0"         "0/1"         "0/0"        
## HiC_scaffold_31_3224722   "0|1"         "0/0"         NA           
## HiC_scaffold_31_3574854   NA            "0/0"         "0/0"        
## HiC_scaffold_31_5899551   NA            "1/1"         "1/1"        
## HiC_scaffold_31_5911491   "0/0"         NA            NA           
## HiC_scaffold_31_6297680   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_31_12394016  "0/1"         "1|1"         "0/0"        
## HiC_scaffold_31_12394040  "0|1"         "0/0"         "1|1"        
## HiC_scaffold_31_18612650  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_32_4446859   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_32_5274796   "0/0"         "0/1"         "0/0"        
## HiC_scaffold_32_5275108   "1/1"         NA            "0/0"        
## HiC_scaffold_32_5282358   "0/0"         "1/1"         NA           
## HiC_scaffold_32_5450203   NA            "0/0"         "1|1"        
## HiC_scaffold_32_44200178  NA            NA            "1/1"        
## HiC_scaffold_33_638523    NA            "0/0"         NA           
## HiC_scaffold_33_44489563  "0|0"         "0/0"         NA           
## HiC_scaffold_33_44489988  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_33_47080180  "0/0"         NA            NA           
## HiC_scaffold_33_47495907  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_33_51865876  NA            "0/0"         "0/0"        
## HiC_scaffold_34_1096982   NA            NA            NA           
## HiC_scaffold_34_6091943   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_34_6100160   "0/0"         "1|1"         NA           
## HiC_scaffold_34_24368584  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_35_3233120   "0/1"         "0/0"         "1/1"        
## HiC_scaffold_35_3253574   "0/1"         "1/1"         "1/1"        
## HiC_scaffold_35_5512296   NA            NA            NA           
## HiC_scaffold_35_15114788  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_35_21214090  "0/0"         NA            "0/0"        
## HiC_scaffold_35_21462564  "0/1"         "0/0"         NA           
## HiC_scaffold_35_22746783  "0/1"         "0/1"         "1/1"        
## HiC_scaffold_35_22747085  "0|1"         "0/0"         "0/0"        
## HiC_scaffold_35_23059580  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_35_23158882  NA            "0/0"         "0/0"        
## HiC_scaffold_35_23261143  NA            "1/1"         "1|1"        
## HiC_scaffold_35_24403602  "1|1"         "1/1"         "0/0"        
## HiC_scaffold_35_24403620  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_35_24993986  "1|1"         NA            NA           
## HiC_scaffold_35_24993998  "1|1"         NA            NA           
## HiC_scaffold_36_1538038   "1/1"         NA            "0/0"        
## HiC_scaffold_36_2464728   "1/1"         "0|1"         NA           
## HiC_scaffold_36_5489050   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_36_9673981   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_36_9674127   "0/0"         "1/1"         "1/1"        
## HiC_scaffold_36_9674756   NA            NA            NA           
## HiC_scaffold_36_9676329   "1/1"         "1/1"         NA           
## HiC_scaffold_36_12304516  NA            "1/1"         "0/1"        
## HiC_scaffold_36_12515555  NA            NA            "1|1"        
## HiC_scaffold_36_13092647  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_36_13766994  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_36_14567741  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_36_15530578  "1|1"         NA            NA           
## HiC_scaffold_37_679894    "1/1"         "1/1"         NA           
## HiC_scaffold_37_916693    "0/0"         "0/0"         "0/0"        
## HiC_scaffold_37_928146    "0/0"         NA            NA           
## HiC_scaffold_37_1256768   "1|1"         NA            NA           
## HiC_scaffold_37_1270034   NA            "1/1"         NA           
## HiC_scaffold_37_1770997   "0/0"         NA            "0/0"        
## HiC_scaffold_37_1798298   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_37_2010342   NA            "0/0"         "0/0"        
## HiC_scaffold_37_2141526   NA            "0/0"         "1/1"        
## HiC_scaffold_37_3952190   "0/0"         "1|1"         "0/0"        
## HiC_scaffold_37_3952215   "0/0"         "1|1"         "0/0"        
## HiC_scaffold_37_9915037   NA            NA            "0/0"        
## HiC_scaffold_38_5383430   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_38_5668363   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_38_5879849   NA            NA            NA           
## HiC_scaffold_38_5880155   NA            NA            "0/1"        
## HiC_scaffold_38_10612790  "0/0"         NA            "0/0"        
## HiC_scaffold_38_11940240  "1/1"         NA            "2|2"        
## HiC_scaffold_38_12878826  "0/0"         NA            "1|1"        
## HiC_scaffold_38_12959698  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_38_13087368  NA            "1/1"         NA           
## HiC_scaffold_38_13480648  "0/0"         NA            NA           
## HiC_scaffold_38_13965243  "1/1"         "0/0"         NA           
## HiC_scaffold_38_14089955  NA            "0/0"         NA           
## HiC_scaffold_38_14408072  "0/0"         "0/0"         NA           
## HiC_scaffold_38_14931216  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_38_14978356  NA            "0/0"         "0/0"        
## HiC_scaffold_38_14978367  NA            "0/0"         "0/0"        
## HiC_scaffold_38_15292863  NA            "0/0"         "0/0"        
## HiC_scaffold_38_15306135  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_38_16077506  NA            NA            "0/0"        
## HiC_scaffold_38_16138965  "1/1"         "0/1"         NA           
## HiC_scaffold_38_16226040  NA            NA            "1/1"        
## HiC_scaffold_39_1393769   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_39_2014970   "1|1"         "0/0"         NA           
## HiC_scaffold_39_2014982   "1|1"         "0/0"         NA           
## HiC_scaffold_39_2014985   "1|1"         "0/0"         NA           
## HiC_scaffold_39_2426443   NA            "0/0"         "0/0"        
## HiC_scaffold_39_2485330   NA            "1/1"         "0/0"        
## HiC_scaffold_39_3350506   NA            NA            "1|1"        
## HiC_scaffold_39_5897388   NA            NA            "0/0"        
## HiC_scaffold_39_17631133  "0/0"         NA            NA           
## HiC_scaffold_4_12107187   NA            "0/0"         "1/1"        
## HiC_scaffold_4_18241670   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_4_18241723   "1/1"         "1|1"         "1|1"        
## HiC_scaffold_4_22418566   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_4_27899990   "1|1"         NA            "0/0"        
## HiC_scaffold_4_35575118   NA            NA            NA           
## HiC_scaffold_4_38000967   NA            "1/1"         "1/1"        
## HiC_scaffold_4_50654021   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_40_2243415   "0/1"         "0/0"         "1/1"        
## HiC_scaffold_40_3000572   "0/0"         "0/0"         NA           
## HiC_scaffold_40_3014177   "0/0"         NA            "1/1"        
## HiC_scaffold_40_3027900   "0/0"         NA            "0/0"        
## HiC_scaffold_40_3143834   "0/0"         NA            "1/1"        
## HiC_scaffold_40_3843942   "0/0"         "0/1"         "0/0"        
## HiC_scaffold_40_3847620   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_40_3891007   "0/1"         "0/1"         "1/1"        
## HiC_scaffold_40_3920667   NA            NA            "2/2"        
## HiC_scaffold_40_4177963   "0/0"         "0/0"         NA           
## HiC_scaffold_40_4819107   "1/1"         "1/1"         "0/0"        
## HiC_scaffold_40_4819834   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_40_5788271   "0/0"         "0/0"         NA           
## HiC_scaffold_40_5965269   "0/0"         NA            "0/0"        
## HiC_scaffold_40_6204154   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_40_8387917   "0/0"         "1|1"         "0/0"        
## HiC_scaffold_41_3235384   "0/0"         "0/1"         "0/0"        
## HiC_scaffold_41_3583000   "0/1"         "0/0"         "1/1"        
## HiC_scaffold_41_5334504   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_41_5387631   "0/0"         "1|1"         NA           
## HiC_scaffold_41_6423426   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_41_14359947  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_41_24007593  NA            "0/0"         NA           
## HiC_scaffold_41_26225447  "1|1"         NA            NA           
## HiC_scaffold_41_28626484  "0/0"         NA            "1/1"        
## HiC_scaffold_41_28660620  "1|1"         "0/0"         NA           
## HiC_scaffold_41_31007688  "0/0"         NA            "0/0"        
## HiC_scaffold_42_1131084   "0/0"         NA            "0/1"        
## HiC_scaffold_42_1818523   "0/1"         "1/1"         "0/0"        
## HiC_scaffold_42_2165002   "1/2"         "0/0"         "0/0"        
## HiC_scaffold_42_2711332   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_42_6142699   "1/1"         NA            "0/1"        
## HiC_scaffold_42_6744976   "1/1"         NA            "1/1"        
## HiC_scaffold_42_8066919   "0/0"         "0/0"         NA           
## HiC_scaffold_42_8068292   "0/0"         "1|1"         "0/1"        
## HiC_scaffold_42_12487888  "0/0"         NA            NA           
## HiC_scaffold_42_41366687  "0/0"         "1/1"         NA           
## HiC_scaffold_42_47313337  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_42_47313338  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_42_50784971  NA            "1|1"         "0/0"        
## HiC_scaffold_42_50784977  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_42_50784981  NA            "0/0"         "1/1"        
## HiC_scaffold_42_51916989  NA            "1/1"         "1/1"        
## HiC_scaffold_43_3842003   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_43_14140861  "1|1"         "0/1"         "0/0"        
## HiC_scaffold_43_15053605  "1/1"         "1|1"         "1/1"        
## HiC_scaffold_43_17289945  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_43_29967704  "1/1"         NA            NA           
## HiC_scaffold_43_35745831  "1|1"         "0|1"         "0/0"        
## HiC_scaffold_43_37627949  NA            "0/0"         "0/0"        
## HiC_scaffold_43_37628126  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_43_44017118  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_43_55124138  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_43_60107326  NA            "1|1"         NA           
## HiC_scaffold_43_61359386  "1/1"         "0/0"         NA           
## HiC_scaffold_43_61702593  "1|1"         "0|1"         NA           
## HiC_scaffold_43_61702606  "1|1"         "0|1"         NA           
## HiC_scaffold_43_61702721  NA            "1|1"         NA           
## HiC_scaffold_43_61702738  "1/1"         "0/0"         NA           
## HiC_scaffold_43_62511703  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_43_64069457  NA            NA            "0/0"        
## HiC_scaffold_43_64577269  "1/1"         NA            "1/1"        
## HiC_scaffold_44_1920144   NA            "0/1"         "0/0"        
## HiC_scaffold_44_2148035   "0/0"         "0/0"         "0/1"        
## HiC_scaffold_44_2568167   "0/0"         "0/0"         NA           
## HiC_scaffold_45_4180070   NA            "1|1"         "1/1"        
## HiC_scaffold_45_4797754   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_45_5911123   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_45_6958990   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_45_8516216   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_45_10191213  "1/1"         "1/1"         NA           
## HiC_scaffold_45_12005885  "1/1"         "1/1"         NA           
## HiC_scaffold_45_12006766  "0|1"         "1|1"         NA           
## HiC_scaffold_45_24736172  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_45_24739830  "1|1"         "0|1"         "1|1"        
## HiC_scaffold_46_9691567   NA            "0/0"         "0|1"        
## HiC_scaffold_46_17380257  "0/1"         "0/1"         NA           
## HiC_scaffold_46_18387147  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_46_37092355  "0|0"         "0/0"         NA           
## HiC_scaffold_46_39183624  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_46_39390547  "0/0"         NA            "1|1"        
## HiC_scaffold_46_42964941  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_46_42986653  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_46_52074364  NA            "1|1"         NA           
## HiC_scaffold_46_54255667  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_47_3750532   NA            NA            "1/1"        
## HiC_scaffold_47_3751345   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_47_15400639  "1|1"         "1|1"         NA           
## HiC_scaffold_47_24072414  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_47_25273825  "0|1"         "0/0"         "0|1"        
## HiC_scaffold_48_8752752   "0/0"         NA            NA           
## HiC_scaffold_48_10765920  "1/1"         "1|1"         "0/0"        
## HiC_scaffold_48_16077918  NA            "0/0"         "1|1"        
## HiC_scaffold_48_16077940  "0/0"         "1/1"         "1|1"        
## HiC_scaffold_48_16411609  "0/0"         NA            "1/1"        
## HiC_scaffold_48_19972580  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_48_23493079  NA            NA            NA           
## HiC_scaffold_48_23597210  "0/0"         "0/1"         NA           
## HiC_scaffold_48_24478493  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_48_24881148  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_48_25865723  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_48_25984068  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_48_25989079  "0|1"         NA            "0/0"        
## HiC_scaffold_48_30601375  "0|1"         "0/0"         NA           
## HiC_scaffold_48_31662115  NA            "1/1"         "1/1"        
## HiC_scaffold_48_41971562  NA            "0/0"         "0/0"        
## HiC_scaffold_49_3392801   NA            "0/0"         "0/0"        
## HiC_scaffold_49_6101692   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_49_7996315   "0/1"         "1/1"         "0/0"        
## HiC_scaffold_49_9470474   "1/1"         "1/1"         NA           
## HiC_scaffold_49_9886007   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_49_12592113  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_49_12741575  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_49_15135019  NA            "1/1"         NA           
## HiC_scaffold_49_25906219  "1|1"         "0/0"         NA           
## HiC_scaffold_49_26614199  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_49_26655554  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_49_37568341  "0/0"         NA            "1|1"        
## HiC_scaffold_49_37568353  "0/0"         NA            "1|1"        
## HiC_scaffold_49_40002255  NA            "0/0"         "1|1"        
## HiC_scaffold_49_40003229  "1|1"         "1|1"         NA           
## HiC_scaffold_49_42966376  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_5_801252     "1/1"         "0/0"         "0/0"        
## HiC_scaffold_5_1446603    NA            "0/0"         "0/0"        
## HiC_scaffold_5_1446611    NA            "0/0"         "0/0"        
## HiC_scaffold_5_1530759    "0/0"         NA            "0|1"        
## HiC_scaffold_5_1539275    "0/0"         "0/0"         "2|2"        
## HiC_scaffold_5_1789576    "0/1"         NA            NA           
## HiC_scaffold_5_1808197    "1/1"         NA            "0/0"        
## HiC_scaffold_5_1808204    "0/0"         "0/0"         "1/1"        
## HiC_scaffold_5_1943895    "0/0"         NA            "0/0"        
## HiC_scaffold_5_1944469    "0/0"         "0/0"         "0/0"        
## HiC_scaffold_5_2857283    "0/1"         "0/0"         "0/0"        
## HiC_scaffold_5_4061378    NA            "0/0"         "0/1"        
## HiC_scaffold_5_4340647    NA            NA            "0/0"        
## HiC_scaffold_5_4435246    NA            "1/1"         "1/1"        
## HiC_scaffold_5_8868783    "1/1"         NA            "1/1"        
## HiC_scaffold_50_4315969   "1/1"         "0/0"         "0/1"        
## HiC_scaffold_50_11652296  NA            NA            "1|1"        
## HiC_scaffold_50_11657309  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_50_15521027  "0/0"         NA            NA           
## HiC_scaffold_50_21050962  "0/0"         "1/1"         NA           
## HiC_scaffold_50_23686202  "1|1"         "1|1"         "1/1"        
## HiC_scaffold_50_27393462  "0/0"         NA            "0/0"        
## HiC_scaffold_50_42586883  "0/0"         NA            "0/0"        
## HiC_scaffold_50_45087211  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_50_49796550  "1/1"         "1/1"         NA           
## HiC_scaffold_50_54383367  NA            "0/0"         "0/0"        
## HiC_scaffold_50_63318678  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_51_3521000   "0/1"         NA            NA           
## HiC_scaffold_51_4681905   "1/1"         "1/1"         NA           
## HiC_scaffold_51_6305599   "0|2"         "0/0"         NA           
## HiC_scaffold_51_8530818   NA            NA            "1|1"        
## HiC_scaffold_51_11653312  "1/1"         "0/0"         NA           
## HiC_scaffold_51_13138547  "0/1"         NA            NA           
## HiC_scaffold_51_14457091  NA            NA            NA           
## HiC_scaffold_51_15512668  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_51_17816346  "1/1"         NA            "1/1"        
## HiC_scaffold_51_19997934  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_51_19997936  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_51_20870773  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_51_26660104  "0/0"         "0/1"         NA           
## HiC_scaffold_51_40727521  "1|1"         "0/0"         NA           
## HiC_scaffold_51_40892841  "0/1"         "0/1"         "0/1"        
## HiC_scaffold_51_41717519  NA            "0/0"         "0/0"        
## HiC_scaffold_51_42547638  "1/1"         NA            NA           
## HiC_scaffold_52_3335804   NA            "0/0"         "0/0"        
## HiC_scaffold_52_4149130   "0/0"         "0/0"         NA           
## HiC_scaffold_52_6893679   "0/1"         "1|1"         "0|1"        
## HiC_scaffold_52_13155416  "1/1"         NA            NA           
## HiC_scaffold_52_13155437  "1|1"         NA            NA           
## HiC_scaffold_52_13155442  "1|1"         NA            NA           
## HiC_scaffold_52_14885688  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_52_14895078  "1/1"         NA            "0/1"        
## HiC_scaffold_52_15141791  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_52_15743051  NA            "1|1"         "0/0"        
## HiC_scaffold_52_15760201  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_52_15834589  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_52_15841769  "0/0"         NA            "0/1"        
## HiC_scaffold_52_15862421  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_52_15970970  "2/2"         "0/0"         NA           
## HiC_scaffold_52_16275237  NA            "0/1"         "0/0"        
## HiC_scaffold_52_16275240  "0/0"         "0/0"         NA           
## HiC_scaffold_52_16275290  NA            "0/0"         NA           
## HiC_scaffold_52_16524164  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_52_16524572  "1/1"         NA            "1/1"        
## HiC_scaffold_52_16525647  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_52_16637047  "0/0"         "0/0"         NA           
## HiC_scaffold_52_17202127  NA            "0/0"         NA           
## HiC_scaffold_52_17207724  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_52_17508820  NA            "1|1"         "1|1"        
## HiC_scaffold_52_17547593  NA            "1/1"         NA           
## HiC_scaffold_52_17551239  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_52_17560696  "0/0"         NA            "0/0"        
## HiC_scaffold_52_17560699  "0/0"         NA            "0/0"        
## HiC_scaffold_52_17741250  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_52_17742260  NA            "0/0"         "0/0"        
## HiC_scaffold_52_18340578  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_52_18415911  NA            "0/0"         "1/1"        
## HiC_scaffold_52_22189517  "0/0"         "1/1"         NA           
## HiC_scaffold_52_22526592  "1|1"         "1/1"         "1/1"        
## HiC_scaffold_52_26393471  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_52_26799380  NA            "0/0"         "0/0"        
## HiC_scaffold_52_31871931  "0/0"         "0/1"         NA           
## HiC_scaffold_52_31874283  NA            "1|1"         "1/1"        
## HiC_scaffold_52_31874287  NA            "1|1"         "0/0"        
## HiC_scaffold_52_32161053  "1|1"         "0|1"         "0|1"        
## HiC_scaffold_52_33165557  "0/0"         NA            NA           
## HiC_scaffold_52_33897620  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_52_34763156  "1|1"         "0/1"         "0/1"        
## HiC_scaffold_52_34763171  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_52_35174755  "0/0"         NA            "1|1"        
## HiC_scaffold_52_35608453  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_52_35608470  "0/1"         "0/0"         "1|1"        
## HiC_scaffold_52_39464728  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_52_42141354  "0/1"         NA            "0/1"        
## HiC_scaffold_52_44675725  NA            NA            NA           
## HiC_scaffold_52_49935920  "1/1"         "0/0"         NA           
## HiC_scaffold_53_21789524  NA            "0/0"         "0/0"        
## HiC_scaffold_53_25168042  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_53_26398989  NA            NA            "1|1"        
## HiC_scaffold_53_26398992  NA            NA            "1|1"        
## HiC_scaffold_53_26398994  NA            NA            "1|1"        
## HiC_scaffold_53_26549665  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_53_29227676  "0/0"         "0|1"         NA           
## HiC_scaffold_53_31250349  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_54_530581    "1|1"         "1|1"         "1|1"        
## HiC_scaffold_54_794095    "0/0"         NA            "1|1"        
## HiC_scaffold_54_1171109   "0/0"         NA            "0/0"        
## HiC_scaffold_54_1378956   "0/0"         "1/1"         "0/1"        
## HiC_scaffold_54_1380539   "1/1"         "0/0"         NA           
## HiC_scaffold_54_3045015   NA            "1/1"         "1/1"        
## HiC_scaffold_54_3185987   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_54_4401098   "1|1"         NA            "0/0"        
## HiC_scaffold_54_5595903   NA            "0/0"         "0/0"        
## HiC_scaffold_54_5595921   NA            "0/0"         "0/0"        
## HiC_scaffold_54_5595928   NA            "0/0"         "0/0"        
## HiC_scaffold_54_5595949   NA            "0/0"         "0/0"        
## HiC_scaffold_54_6649662   "0/0"         NA            NA           
## HiC_scaffold_54_8036734   "0/1"         "1|1"         "0/0"        
## HiC_scaffold_54_9206614   NA            NA            "0/0"        
## HiC_scaffold_54_35913192  NA            "0/0"         "0/0"        
## HiC_scaffold_54_35913282  "1|1"         "0|1"         "0/0"        
## HiC_scaffold_54_35913283  "1|1"         "0/1"         "0/0"        
## HiC_scaffold_55_1260491   "1/1"         NA            "1/1"        
## HiC_scaffold_55_3254027   "1/1"         "0/0"         "1/1"        
## HiC_scaffold_55_3281985   NA            "0/0"         "0/0"        
## HiC_scaffold_55_5409544   "0/0"         NA            "1/1"        
## HiC_scaffold_55_5411094   "1|1"         NA            "1|1"        
## HiC_scaffold_55_5411115   "0/1"         "1/1"         "1/1"        
## HiC_scaffold_55_18121799  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_55_19605809  "1/1"         "0|1"         "1/1"        
## HiC_scaffold_55_19605817  NA            "1|1"         "0|1"        
## HiC_scaffold_55_19605821  "1/1"         "1|1"         "0|1"        
## HiC_scaffold_55_20195204  "0/0"         "0/0"         NA           
## HiC_scaffold_55_20886967  NA            "1/1"         NA           
## HiC_scaffold_55_23222937  "1|1"         NA            "0/0"        
## HiC_scaffold_55_23626331  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_55_24539590  "1/1"         NA            "1/1"        
## HiC_scaffold_55_24585939  NA            "0/0"         "1/1"        
## HiC_scaffold_55_34174151  NA            NA            "0|1"        
## HiC_scaffold_56_17874332  NA            "1/1"         NA           
## HiC_scaffold_56_18635259  NA            "1|1"         "0/0"        
## HiC_scaffold_56_23654344  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_56_35850533  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_56_35850539  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_56_40813556  "1/1"         "0/1"         "0/0"        
## HiC_scaffold_56_53211633  "0/0"         "1/1"         NA           
## HiC_scaffold_56_60070829  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_56_73286017  "0/1"         "1|1"         "0/0"        
## HiC_scaffold_56_73829442  NA            NA            "0/0"        
## HiC_scaffold_56_73829443  NA            NA            "0/0"        
## HiC_scaffold_56_76060304  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_57_25306408  "0/1"         NA            "0/0"        
## HiC_scaffold_57_29222385  "0|1"         "0/0"         "0|1"        
## HiC_scaffold_57_29592432  NA            NA            "0/0"        
## HiC_scaffold_57_31472698  "0|1"         "1/1"         "0/0"        
## HiC_scaffold_57_32371742  "1/1"         NA            "1/1"        
## HiC_scaffold_57_36495072  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_57_37286264  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_57_38537415  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_57_45438854  "0|1"         NA            NA           
## HiC_scaffold_57_52856874  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_57_53575355  NA            NA            NA           
## HiC_scaffold_57_55856783  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_58_1362614   NA            NA            "0/1"        
## HiC_scaffold_58_1432845   "0/1"         "1/1"         "1|1"        
## HiC_scaffold_58_1541720   "0/0"         "0/0"         NA           
## HiC_scaffold_58_2777120   "1/1"         NA            "0/0"        
## HiC_scaffold_58_2973169   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_58_3243043   "0/0"         "0/1"         "1/1"        
## HiC_scaffold_58_4035282   "0/0"         "0/0"         NA           
## HiC_scaffold_58_5442157   NA            NA            NA           
## HiC_scaffold_58_8004631   "0/0"         NA            NA           
## HiC_scaffold_58_8058998   "0/0"         NA            "0/0"        
## HiC_scaffold_58_8932837   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_58_14814944  "1/1"         "0/0"         NA           
## HiC_scaffold_58_15639988  "1/1"         "0/1"         "0/0"        
## HiC_scaffold_58_15707198  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_58_15707258  "0/1"         NA            "1/1"        
## HiC_scaffold_58_15710623  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_58_19155063  "1|1"         NA            NA           
## HiC_scaffold_58_20224050  "0/0"         "0/0"         NA           
## HiC_scaffold_58_38475355  "1/1"         "1/1"         NA           
## HiC_scaffold_59_3979055   NA            "0/0"         "0/0"        
## HiC_scaffold_59_5071810   NA            "0/0"         "0/1"        
## HiC_scaffold_59_5349936   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_59_5350114   NA            NA            NA           
## HiC_scaffold_59_7738302   NA            "0/0"         "1/1"        
## HiC_scaffold_59_7738351   NA            "0/0"         "1/1"        
## HiC_scaffold_59_7958561   NA            "0/0"         "1|1"        
## HiC_scaffold_59_9273798   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_59_50928099  "0/0"         NA            "0/0"        
## HiC_scaffold_59_52960060  NA            "0/0"         NA           
## HiC_scaffold_6_10569023   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_6_10711445   NA            NA            "0/0"        
## HiC_scaffold_6_13209200   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_6_13213107   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_6_13311684   "1|1"         "1|1"         "0/0"        
## HiC_scaffold_6_15670783   "0/0"         "1|1"         "1|1"        
## HiC_scaffold_6_19111232   NA            "0/0"         "0/0"        
## HiC_scaffold_6_32805498   "1/1"         "1/1"         "0/0"        
## HiC_scaffold_6_38793174   "1|1"         NA            NA           
## HiC_scaffold_6_41092101   "1|1"         "0/1"         "1|1"        
## HiC_scaffold_6_41342933   "1/1"         "1/1"         "0/0"        
## HiC_scaffold_6_47594508   NA            NA            NA           
## HiC_scaffold_60_70878     NA            "1|1"         "1|1"        
## HiC_scaffold_60_99549     "0/0"         NA            "1|1"        
## HiC_scaffold_60_201823    "0/0"         "0/0"         "1/1"        
## HiC_scaffold_60_712969    "0/0"         "1|1"         NA           
## HiC_scaffold_60_744783    "1/1"         "0/0"         "0|0"        
## HiC_scaffold_60_744788    "0/0"         NA            "0/0"        
## HiC_scaffold_60_22142128  "0/0"         "0|1"         "1|1"        
## HiC_scaffold_60_27599770  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_60_30608878  "0/0"         "1/1"         "1|1"        
## HiC_scaffold_60_32657324  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_60_32672580  "1/1"         "1/1"         NA           
## HiC_scaffold_60_38856893  "0/1"         NA            "0/0"        
## HiC_scaffold_60_39028335  NA            "1/1"         "1/1"        
## HiC_scaffold_60_40296869  "0/0"         "1/1"         NA           
## HiC_scaffold_60_42775723  "1|1"         NA            "1/1"        
## HiC_scaffold_60_44687906  "0/0"         NA            "0/0"        
## HiC_scaffold_60_44804601  "0/0"         "0/0"         NA           
## HiC_scaffold_60_53696867  NA            "0/0"         "0/0"        
## HiC_scaffold_60_53696868  NA            "0/0"         "0/0"        
## HiC_scaffold_60_60651515  "1/1"         "1|1"         "0|1"        
## HiC_scaffold_60_70678462  NA            "1/1"         "1/1"        
## HiC_scaffold_61_2205328   "0/1"         "0/0"         NA           
## HiC_scaffold_61_2491706   "1|1"         "1/1"         "1|1"        
## HiC_scaffold_61_4009916   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_61_4062917   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_61_4122763   NA            "1|1"         NA           
## HiC_scaffold_61_4216461   "1/1"         NA            "1/1"        
## HiC_scaffold_61_4325053   "0/0"         NA            "0/0"        
## HiC_scaffold_61_9004838   NA            "1|1"         "1|1"        
## HiC_scaffold_61_14635083  NA            NA            "0/0"        
## HiC_scaffold_62_1128608   NA            "1/1"         "1/1"        
## HiC_scaffold_62_11335200  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_62_18828476  "0/0"         "1/1"         NA           
## HiC_scaffold_62_21548870  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_62_23103274  "0/0"         NA            "1/1"        
## HiC_scaffold_62_25793456  "0/0"         "0/0"         NA           
## HiC_scaffold_62_25887474  "0/0"         NA            "0/0"        
## HiC_scaffold_62_28516096  "1|1"         "1|1"         NA           
## HiC_scaffold_62_28516099  "1|1"         "1|1"         NA           
## HiC_scaffold_62_28818725  "0/0"         "0/0"         NA           
## HiC_scaffold_62_28818729  "1/1"         "1/1"         NA           
## HiC_scaffold_62_45207353  NA            "0/0"         NA           
## HiC_scaffold_63_3092269   "0/0"         NA            "1/1"        
## HiC_scaffold_63_3977940   "0/0"         "0/0"         "0/1"        
## HiC_scaffold_63_4084937   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_63_4196326   "1/1"         "1/1"         NA           
## HiC_scaffold_63_6262453   "0/1"         "1/1"         "1/1"        
## HiC_scaffold_63_6350204   "1/1"         "0/0"         NA           
## HiC_scaffold_63_6458794   "0/0"         NA            "1|1"        
## HiC_scaffold_64_9162978   NA            NA            "2/2"        
## HiC_scaffold_64_16876561  "0/0"         NA            NA           
## HiC_scaffold_64_17543009  "0/0"         NA            "0/0"        
## HiC_scaffold_64_18925356  NA            "0/0"         "0/0"        
## HiC_scaffold_64_19133050  "0/0"         NA            "0/0"        
## HiC_scaffold_64_19627769  "1|1"         NA            "0/1"        
## HiC_scaffold_64_20477250  NA            NA            "0/0"        
## HiC_scaffold_64_22816677  "0/0"         "0/0"         NA           
## HiC_scaffold_64_22954654  "0|1"         "1|1"         "1|1"        
## HiC_scaffold_64_22954658  "0|1"         "1|1"         "1|1"        
## HiC_scaffold_64_22954682  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_65_6829971   NA            NA            "0/0"        
## HiC_scaffold_65_8071102   NA            NA            "0/0"        
## HiC_scaffold_65_9023979   "0/1"         "1/1"         "0/0"        
## HiC_scaffold_65_9839671   NA            NA            NA           
## HiC_scaffold_65_10404778  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_65_11327791  NA            "1/1"         "0/0"        
## HiC_scaffold_65_11332104  "0/0"         NA            NA           
## HiC_scaffold_65_34823822  NA            "1/1"         "0/0"        
## HiC_scaffold_65_51418017  "1/1"         NA            "1/1"        
## HiC_scaffold_65_54053979  NA            "1|1"         "1|1"        
## HiC_scaffold_65_57110875  "1|1"         "1|1"         NA           
## HiC_scaffold_66_15615363  "0/0"         "0/0"         "0|1"        
## HiC_scaffold_66_15672090  NA            "0/0"         "1/1"        
## HiC_scaffold_66_17903445  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_66_18298629  NA            "0/0"         "0/0"        
## HiC_scaffold_66_19730676  "1|1"         "0/0"         NA           
## HiC_scaffold_66_23688768  "0/1"         "1/1"         "0/1"        
## HiC_scaffold_66_26614535  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_66_27445665  "0/1"         "0/0"         NA           
## HiC_scaffold_66_29457165  "0/1"         "0/1"         "0|1"        
## HiC_scaffold_66_29457180  "0/1"         "0/1"         "1/1"        
## HiC_scaffold_66_30116287  "1|1"         "1|1"         "1/1"        
## HiC_scaffold_66_31603503  "0/0"         NA            "1|1"        
## HiC_scaffold_66_33261460  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_66_34138981  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_66_34139020  "0/0"         "0/0"         NA           
## HiC_scaffold_66_34142862  "0/0"         NA            "1/1"        
## HiC_scaffold_67_1404390   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_67_28493665  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_67_30243885  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_67_31511806  NA            "0/0"         "0|1"        
## HiC_scaffold_67_34638092  "0/0"         "1/1"         NA           
## HiC_scaffold_67_37534720  "0/1"         NA            NA           
## HiC_scaffold_67_39679546  "0/0"         "1/1"         NA           
## HiC_scaffold_67_39854918  NA            "1|1"         "0/0"        
## HiC_scaffold_67_39860738  NA            "1/1"         "0/1"        
## HiC_scaffold_67_40331656  "0/0"         NA            "0/0"        
## HiC_scaffold_67_40824747  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_68_3438132   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_68_3438133   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_68_11206902  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_68_32770607  NA            "1|1"         NA           
## HiC_scaffold_68_34016823  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_68_34020019  "0/1"         "0/1"         "0/1"        
## HiC_scaffold_68_40296057  NA            "0/0"         "0/0"        
## HiC_scaffold_68_40296059  NA            "0/0"         "0/0"        
## HiC_scaffold_68_65001879  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_69_23311147  NA            NA            "0/0"        
## HiC_scaffold_69_27351303  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_69_29437208  NA            "0/0"         NA           
## HiC_scaffold_69_33699381  NA            "0/0"         "1|1"        
## HiC_scaffold_69_40194698  "0/1"         NA            "1/1"        
## HiC_scaffold_69_48273575  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_69_48348026  NA            NA            "0/1"        
## HiC_scaffold_69_48348034  NA            NA            "0/1"        
## HiC_scaffold_69_49563252  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_69_49593952  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_69_49859037  "0|1"         NA            "0/0"        
## HiC_scaffold_69_51271238  "1|1"         NA            "0/0"        
## HiC_scaffold_69_51529836  NA            NA            "0/0"        
## HiC_scaffold_69_57313650  NA            NA            NA           
## HiC_scaffold_69_57359194  NA            "1/1"         "1/1"        
## HiC_scaffold_6951_523650  "0/0"         NA            "0/0"        
## HiC_scaffold_6951_897126  "0/0"         NA            NA           
## HiC_scaffold_6951_1134482 NA            NA            "1|1"        
## HiC_scaffold_6951_2484960 "0/0"         NA            "0/1"        
## HiC_scaffold_6951_3301273 "1/1"         NA            NA           
## HiC_scaffold_6951_3314609 "0/0"         "0/0"         "0/1"        
## HiC_scaffold_6951_3945993 "0/0"         "0/0"         NA           
## HiC_scaffold_6958_218293  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_6958_449143  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_7_351023     "1/1"         NA            "0/1"        
## HiC_scaffold_7_488024     NA            "0/0"         "0|1"        
## HiC_scaffold_7_492663     "1/1"         NA            NA           
## HiC_scaffold_7_693567     "0/0"         NA            NA           
## HiC_scaffold_7_2379128    "0/1"         "0/0"         "0/0"        
## HiC_scaffold_7_3087721    "0/1"         "0/1"         "1/1"        
## HiC_scaffold_7_3394880    "0/0"         "1/1"         "0/1"        
## HiC_scaffold_7_22247106   "0/0"         NA            "0/0"        
## HiC_scaffold_70_4632611   NA            NA            "0/0"        
## HiC_scaffold_70_14042778  "0/1"         "1|1"         "0/0"        
## HiC_scaffold_71_410844    "1/1"         "1|1"         NA           
## HiC_scaffold_71_1753451   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_71_2283682   "0|1"         NA            "0/0"        
## HiC_scaffold_71_3439685   "0/0"         "2|2"         NA           
## HiC_scaffold_71_17850462  "0/1"         "0/1"         "0/0"        
## HiC_scaffold_71_20588314  "0/0"         NA            "1|1"        
## HiC_scaffold_71_25465351  "0/0"         "0|1"         "0/0"        
## HiC_scaffold_71_25465352  "0/0"         "0|1"         "0/0"        
## HiC_scaffold_71_26356062  NA            "0/1"         NA           
## HiC_scaffold_72_11785096  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_72_17285854  "0/1"         "1/1"         NA           
## HiC_scaffold_72_23704999  NA            "1/1"         "0/1"        
## HiC_scaffold_72_24465318  NA            NA            NA           
## HiC_scaffold_72_30457277  "0/1"         NA            "1/1"        
## HiC_scaffold_72_32068649  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_72_35058295  NA            "1/1"         NA           
## HiC_scaffold_72_36024997  NA            NA            "1|1"        
## HiC_scaffold_72_37135067  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_72_38410141  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_72_38448056  NA            NA            NA           
## HiC_scaffold_72_41412511  "0/0"         NA            "1/1"        
## HiC_scaffold_73_2192629   "0/1"         "0/0"         "1|1"        
## HiC_scaffold_73_2920208   "0/0"         "0|1"         "0/0"        
## HiC_scaffold_73_4522493   NA            "1/1"         "1/1"        
## HiC_scaffold_73_4748625   "0/0"         NA            "0/0"        
## HiC_scaffold_73_5839336   NA            NA            NA           
## HiC_scaffold_73_9338582   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_73_27393859  "1|1"         "0/0"         "0/1"        
## HiC_scaffold_74_14235619  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_74_14515598  "1/1"         NA            NA           
## HiC_scaffold_74_15116121  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_74_17233613  "1/1"         "1/1"         NA           
## HiC_scaffold_74_17725340  NA            "1|1"         "1|1"        
## HiC_scaffold_74_18418135  "1/1"         "1|1"         "0/0"        
## HiC_scaffold_74_18418138  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_74_21254425  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_74_22261065  NA            "0/0"         "1/1"        
## HiC_scaffold_74_47132519  NA            NA            "0/0"        
## HiC_scaffold_74_50979096  NA            "1/1"         "0/0"        
## HiC_scaffold_74_51060549  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_74_53256803  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_74_55464169  NA            "1/1"         NA           
## HiC_scaffold_74_55515512  NA            "1/1"         "0/0"        
## HiC_scaffold_74_55999260  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_74_57404902  "0/0"         NA            "1|1"        
## HiC_scaffold_74_58181927  NA            NA            "0/0"        
## HiC_scaffold_74_58198600  "1/1"         NA            NA           
## HiC_scaffold_74_63060195  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_75_5345466   "0/0"         "0/0"         "0/1"        
## HiC_scaffold_75_5346522   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_75_5346535   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_75_9850973   "0/0"         "1|1"         "1/1"        
## HiC_scaffold_76_27149820  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_76_31582908  "1/1"         NA            "0/0"        
## HiC_scaffold_76_31792815  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_76_35352820  "0/0"         NA            "0/0"        
## HiC_scaffold_76_57782171  "0/1"         "1/1"         NA           
## HiC_scaffold_76_59862401  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_76_61095594  NA            NA            NA           
## HiC_scaffold_76_65496128  NA            NA            "1/1"        
## HiC_scaffold_76_68965847  NA            "1/1"         "0/1"        
## HiC_scaffold_76_68966411  "1/1"         "1/1"         NA           
## HiC_scaffold_76_69823482  "1|1"         NA            "1|1"        
## HiC_scaffold_76_73343841  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_77_3598274   "0/0"         NA            NA           
## HiC_scaffold_77_6982137   NA            "1/1"         "1/1"        
## HiC_scaffold_77_11021994  NA            "1/1"         "1/1"        
## HiC_scaffold_77_13608165  "0/0"         NA            NA           
## HiC_scaffold_77_16888594  "0/0"         "0/0"         NA           
## HiC_scaffold_77_16888623  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_77_16889448  "0/1"         "0/1"         "0/1"        
## HiC_scaffold_77_39784685  "1|1"         NA            NA           
## HiC_scaffold_77_44375866  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_77_45385370  NA            "0/0"         NA           
## HiC_scaffold_78_5719919   NA            "0/0"         "0/0"        
## HiC_scaffold_78_11353297  "0/0"         NA            NA           
## HiC_scaffold_78_27316392  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_78_48124809  "0/2"         "0/0"         "0/0"        
## HiC_scaffold_78_48124826  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_78_48126176  "1/1"         "0/0"         NA           
## HiC_scaffold_78_48279096  NA            "0/0"         NA           
## HiC_scaffold_78_48434558  "1|1"         NA            "1|1"        
## HiC_scaffold_78_49759181  "1|1"         "0|1"         "0/0"        
## HiC_scaffold_78_49759192  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_78_49759215  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_78_51364025  "1/1"         NA            NA           
## HiC_scaffold_78_55395445  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_78_59610866  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_78_62136661  NA            NA            "1/1"        
## HiC_scaffold_79_1643780   NA            "1/1"         "0/0"        
## HiC_scaffold_79_2519178   NA            "1/1"         "1/1"        
## HiC_scaffold_79_2858100   "0/0"         "1/1"         "1/1"        
## HiC_scaffold_79_3922454   NA            "1/1"         "0/0"        
## HiC_scaffold_79_4127878   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_79_4543693   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_79_11507678  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_79_12618812  "0/0"         NA            "0/0"        
## HiC_scaffold_79_14185404  "1|1"         "0|1"         "1|1"        
## HiC_scaffold_79_17120237  "0/0"         "1/1"         NA           
## HiC_scaffold_79_17120254  "0/0"         "1/1"         NA           
## HiC_scaffold_79_35551507  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_79_35551543  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_79_38927423  NA            "1|1"         "0/0"        
## HiC_scaffold_79_42623307  "1|1"         "0/0"         NA           
## HiC_scaffold_79_43179786  NA            NA            NA           
## HiC_scaffold_79_43180099  "0/0"         NA            "0/0"        
## HiC_scaffold_79_43828078  "0/0"         NA            "0/0"        
## HiC_scaffold_79_43872513  "0/0"         "0/0"         NA           
## HiC_scaffold_79_44627215  "0/1"         "1/1"         NA           
## HiC_scaffold_79_50772769  "1|1"         "1|1"         NA           
## HiC_scaffold_79_55468575  "1/1"         "0/1"         "0/0"        
## HiC_scaffold_79_55816114  "0/0"         "1/1"         NA           
## HiC_scaffold_79_59915784  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_79_60165298  "0/0"         "1|1"         NA           
## HiC_scaffold_79_60165305  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_79_69145556  "0/1"         NA            NA           
## HiC_scaffold_79_70208305  "1|1"         NA            "0/0"        
## HiC_scaffold_79_73412292  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_79_73416663  "1|1"         "1|1"         NA           
## HiC_scaffold_79_73416688  "1|1"         "0|1"         NA           
## HiC_scaffold_79_76863102  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_79_81279649  NA            "0/0"         "0/0"        
## HiC_scaffold_79_81499990  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_79_82319836  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_79_82319849  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_79_83163707  NA            "0/0"         "0/0"        
## HiC_scaffold_79_86283512  "0/0"         "1/1"         NA           
## HiC_scaffold_79_87123758  "1|1"         "1|1"         NA           
## HiC_scaffold_79_88362889  NA            NA            "0/0"        
## HiC_scaffold_79_88599431  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_79_89322919  NA            "1/1"         "0/0"        
## HiC_scaffold_79_89331918  NA            "1|1"         "0/0"        
## HiC_scaffold_79_91340958  "1|1"         "0/0"         "1/1"        
## HiC_scaffold_8_13649836   "1|1"         "1/1"         "0|1"        
## HiC_scaffold_8_13650752   NA            "1|1"         "1|1"        
## HiC_scaffold_8_23818233   NA            "1/1"         "1/1"        
## HiC_scaffold_8_24123972   "0/0"         "0/1"         "0/0"        
## HiC_scaffold_8_24230791   "0/0"         "1|1"         NA           
## HiC_scaffold_8_24588423   NA            NA            "0/0"        
## HiC_scaffold_8_25348483   "0/0"         NA            "1/1"        
## HiC_scaffold_8_25421933   NA            NA            "0/0"        
## HiC_scaffold_8_25772942   NA            NA            "0/0"        
## HiC_scaffold_8_26289589   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_8_27602740   "0/0"         "0|0"         "0/0"        
## HiC_scaffold_8_28159063   NA            "0/0"         "1|1"        
## HiC_scaffold_8_30829320   NA            NA            "0/1"        
## HiC_scaffold_8_31044084   "0/0"         "1|1"         "0/0"        
## HiC_scaffold_8_31415507   "0/0"         NA            "1|1"        
## HiC_scaffold_8_32594682   "0/1"         NA            "0/1"        
## HiC_scaffold_80_3617847   NA            NA            "1|1"        
## HiC_scaffold_80_5758183   "0/0"         "1|1"         NA           
## HiC_scaffold_80_6760006   "0/0"         "0/0"         "0|1"        
## HiC_scaffold_80_6760037   "0/0"         NA            "0/0"        
## HiC_scaffold_80_7772622   "1/1"         "0/0"         "1/1"        
## HiC_scaffold_80_7919533   "0/0"         "1/1"         NA           
## HiC_scaffold_80_8110052   NA            "0/0"         "1|1"        
## HiC_scaffold_80_8193366   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_80_8625784   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_80_8912846   "0/1"         "0/0"         NA           
## HiC_scaffold_80_9544102   "0/1"         NA            "0/0"        
## HiC_scaffold_80_10770701  NA            NA            "0/1"        
## HiC_scaffold_80_11590146  "1/1"         NA            "0/0"        
## HiC_scaffold_80_16953653  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_80_18938832  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_80_19015946  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_80_19404001  NA            "0/0"         "1/1"        
## HiC_scaffold_80_25346708  "0/0"         NA            "0/0"        
## HiC_scaffold_80_37479851  NA            NA            "1/1"        
## HiC_scaffold_80_37507516  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_81_1187192   "0/0"         NA            NA           
## HiC_scaffold_81_2689826   "0|1"         "0/0"         "1|1"        
## HiC_scaffold_81_2690751   NA            "0/0"         "1|1"        
## HiC_scaffold_81_6614123   "0/0"         "1/1"         NA           
## HiC_scaffold_81_7836855   NA            "0/0"         NA           
## HiC_scaffold_81_10334868  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_81_10458752  "0/1"         NA            "0/0"        
## HiC_scaffold_81_17515538  "1/1"         NA            "1/1"        
## HiC_scaffold_81_40271282  "1/1"         NA            "0/0"        
## HiC_scaffold_81_40271294  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_81_41096427  NA            NA            "0/0"        
## HiC_scaffold_81_41096444  NA            NA            "0/0"        
## HiC_scaffold_81_43820595  NA            "0/0"         "1/1"        
## HiC_scaffold_81_43820732  NA            NA            "1|1"        
## HiC_scaffold_81_43854278  "1/1"         NA            "0/1"        
## HiC_scaffold_81_44804862  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_81_45063428  "0/1"         NA            "0/0"        
## HiC_scaffold_81_45950590  NA            "0/0"         "0/0"        
## HiC_scaffold_81_46714752  "0/0"         "0/0"         NA           
## HiC_scaffold_81_46714759  "0/0"         "0/0"         NA           
## HiC_scaffold_81_47170397  NA            "0/0"         "1|1"        
## HiC_scaffold_81_47628201  NA            "0/0"         "0/0"        
## HiC_scaffold_81_48105216  "1|1"         "0/1"         NA           
## HiC_scaffold_81_48932070  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_81_54050146  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_82_5672063   "0/1"         NA            NA           
## HiC_scaffold_82_8796823   NA            "1|1"         "0/0"        
## HiC_scaffold_82_13450959  "1/1"         "0/0"         NA           
## HiC_scaffold_82_26144442  NA            "0|1"         "0/1"        
## HiC_scaffold_82_26147011  "1|1"         "0/1"         "0/0"        
## HiC_scaffold_82_28907834  "1/1"         "0/0"         NA           
## HiC_scaffold_82_34413793  "0/0"         NA            "1|1"        
## HiC_scaffold_82_34413800  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_82_36173035  "0/1"         "1|1"         "1/1"        
## HiC_scaffold_82_40539273  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_82_41470256  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_83_23993605  "0/0"         NA            "0/0"        
## HiC_scaffold_83_35035961  "0/0"         NA            "0/0"        
## HiC_scaffold_83_43423618  NA            NA            "1|1"        
## HiC_scaffold_83_46920654  NA            NA            "0/1"        
## HiC_scaffold_83_46934197  "1/1"         "1|1"         "0/0"        
## HiC_scaffold_84_356301    NA            "1|1"         "0/1"        
## HiC_scaffold_84_5761817   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_84_5769022   "0/0"         "1|1"         "0/0"        
## HiC_scaffold_84_6288130   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_84_6288141   "0|0"         "1/1"         "1|1"        
## HiC_scaffold_84_6288147   "0|0"         "0/0"         "0/0"        
## HiC_scaffold_84_7069238   "0/0"         NA            NA           
## HiC_scaffold_84_9131309   NA            "0/0"         NA           
## HiC_scaffold_84_10148442  NA            "0/0"         NA           
## HiC_scaffold_84_14659391  "1/1"         NA            NA           
## HiC_scaffold_84_16302752  NA            "1/1"         "0/1"        
## HiC_scaffold_84_18463244  NA            "1/1"         "0/0"        
## HiC_scaffold_84_22909575  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_84_29275266  "0/0"         "1/1"         NA           
## HiC_scaffold_84_31184610  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_84_33093169  "0|1"         "1|1"         "0/0"        
## HiC_scaffold_84_37675180  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_84_39501814  "0/0"         NA            "0/1"        
## HiC_scaffold_84_50169438  NA            "0/0"         "1|1"        
## HiC_scaffold_84_50169445  NA            "0/0"         "1|1"        
## HiC_scaffold_84_51231025  "0/0"         NA            "0/0"        
## HiC_scaffold_85_9792207   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_85_11784233  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_85_11911022  "1|1"         NA            NA           
## HiC_scaffold_85_11911142  "0/0"         NA            NA           
## HiC_scaffold_85_11913828  "0/1"         "0|1"         "0/0"        
## HiC_scaffold_85_11913831  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_85_12353081  "0/0"         NA            NA           
## HiC_scaffold_85_12414551  NA            "0/0"         "2/2"        
## HiC_scaffold_85_13043967  NA            NA            "0/0"        
## HiC_scaffold_85_13221888  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_85_27008863  NA            NA            "0/0"        
## HiC_scaffold_85_28992264  "0|1"         "0/0"         "0/0"        
## HiC_scaffold_85_28992268  "0|1"         NA            "1/1"        
## HiC_scaffold_85_64310850  NA            NA            "1|1"        
## HiC_scaffold_85_65135112  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_85_65563529  "0/1"         "1/1"         NA           
## HiC_scaffold_86_1949664   "0/1"         "1|1"         NA           
## HiC_scaffold_86_5340423   "0/0"         "1|1"         "1/1"        
## HiC_scaffold_86_5483991   "1|1"         NA            "0/0"        
## HiC_scaffold_86_8928469   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_86_23727924  "0/0"         NA            NA           
## HiC_scaffold_86_24825818  "1|1"         "1|1"         NA           
## HiC_scaffold_86_25333718  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_86_29668168  "0/0"         "0|1"         NA           
## HiC_scaffold_86_30914243  "1|1"         NA            "1|1"        
## HiC_scaffold_86_32040320  "0|1"         NA            NA           
## HiC_scaffold_86_32040329  "0|1"         NA            NA           
## HiC_scaffold_86_32125061  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_86_32144758  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_86_32153692  "0/0"         NA            "1/1"        
## HiC_scaffold_86_32534129  NA            "0/1"         NA           
## HiC_scaffold_86_32605768  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_86_36355399  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_86_36357265  "1/1"         "1/1"         NA           
## HiC_scaffold_87_1253643   NA            NA            "0/0"        
## HiC_scaffold_87_2137958   "0/0"         NA            "0/1"        
## HiC_scaffold_87_3980100   "0/0"         "1/1"         "1/1"        
## HiC_scaffold_87_4395923   "0/0"         NA            "1/1"        
## HiC_scaffold_87_5489328   "0/1"         NA            NA           
## HiC_scaffold_87_6300441   "0/1"         "1|1"         NA           
## HiC_scaffold_87_16306904  NA            "0/0"         "1/1"        
## HiC_scaffold_87_44780945  NA            NA            "1|1"        
## HiC_scaffold_88_5584327   "1/1"         "1|1"         NA           
## HiC_scaffold_88_7104630   "0/0"         "0|1"         "1|1"        
## HiC_scaffold_88_7104631   "0|1"         "0|1"         "1|1"        
## HiC_scaffold_88_7104638   "0/1"         "0|1"         "1|1"        
## HiC_scaffold_88_7104639   "0|1"         "1|1"         "0/1"        
## HiC_scaffold_88_7104640   "0|1"         "0/0"         "1|1"        
## HiC_scaffold_88_7479340   "0/0"         NA            NA           
## HiC_scaffold_88_8773607   "1|1"         "1|1"         NA           
## HiC_scaffold_88_9883678   "1|1"         NA            NA           
## HiC_scaffold_88_10878718  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_88_19365116  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_88_20477349  "1/1"         NA            NA           
## HiC_scaffold_88_20557885  "1/1"         NA            NA           
## HiC_scaffold_89_675045    "0/0"         "0/0"         "1/1"        
## HiC_scaffold_89_2815845   "0/1"         NA            "0/0"        
## HiC_scaffold_89_2843940   "0/0"         NA            "1/1"        
## HiC_scaffold_89_3018830   "0/1"         NA            "1/1"        
## HiC_scaffold_89_13745506  NA            "0/0"         "0/0"        
## HiC_scaffold_89_30006907  "0/0"         NA            NA           
## HiC_scaffold_89_36509388  "1|1"         "0/0"         NA           
## HiC_scaffold_89_38703735  NA            "0/1"         "0/1"        
## HiC_scaffold_89_38764895  NA            "1/1"         "0/0"        
## HiC_scaffold_89_42052609  "0/0"         NA            "0/0"        
## HiC_scaffold_89_42054991  "0/0"         "0/1"         NA           
## HiC_scaffold_89_44306958  "1/1"         "1|1"         "0/0"        
## HiC_scaffold_89_44338206  "0/1"         "0/1"         "1/1"        
## HiC_scaffold_89_45298973  "1/1"         "1/1"         NA           
## HiC_scaffold_9_3529921    "1/1"         "1/1"         "1/1"        
## HiC_scaffold_9_5660454    "0/0"         "1|1"         NA           
## HiC_scaffold_9_5660461    "1/1"         "0/0"         NA           
## HiC_scaffold_9_5854070    NA            "1/1"         NA           
## HiC_scaffold_9_6142415    "0/0"         NA            "0/0"        
## HiC_scaffold_9_6142436    "0/0"         NA            "0/0"        
## HiC_scaffold_9_6143781    "0/0"         "0/0"         NA           
## HiC_scaffold_9_6654825    "0/0"         "0/1"         "0/0"        
## HiC_scaffold_9_7094545    NA            "1|1"         NA           
## HiC_scaffold_9_7100208    NA            "0/0"         "1|1"        
## HiC_scaffold_9_7109988    NA            NA            NA           
## HiC_scaffold_9_7111922    "0/0"         "0/0"         "1|1"        
## HiC_scaffold_9_8235781    NA            NA            NA           
## HiC_scaffold_9_8279558    "1/1"         NA            "1/1"        
## HiC_scaffold_9_15679481   "1|1"         "0/0"         "1|1"        
## HiC_scaffold_9_18082611   "0/0"         NA            "0/0"        
## HiC_scaffold_9_18090830   NA            "0/0"         "1/1"        
## HiC_scaffold_9_30240531   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_90_10418696  NA            "1/1"         "1/1"        
## HiC_scaffold_90_11470224  NA            "1/1"         "0/0"        
## HiC_scaffold_90_13593319  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_90_16260161  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_90_22325499  "0/1"         "1/1"         NA           
## HiC_scaffold_90_23574204  NA            "0/0"         "1|1"        
## HiC_scaffold_90_23609908  "0/0"         "0/0"         "0|1"        
## HiC_scaffold_90_23623078  NA            "1|1"         NA           
## HiC_scaffold_90_23626883  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_90_23812663  "1/1"         "1/1"         NA           
## HiC_scaffold_90_25939283  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_90_25985714  NA            "1/1"         "0/0"        
## HiC_scaffold_90_30751272  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_90_31232025  "1|1"         NA            "1|1"        
## HiC_scaffold_90_31245699  "1/1"         NA            "0/1"        
## HiC_scaffold_90_31527975  NA            "0/0"         "1/1"        
## HiC_scaffold_90_31546172  "0/0"         NA            "0/0"        
## HiC_scaffold_90_38511996  "0/0"         "0|1"         "0/0"        
## HiC_scaffold_90_38511999  "0/0"         "0|1"         "0/0"        
## HiC_scaffold_90_38517279  "0/0"         NA            NA           
## HiC_scaffold_90_40624104  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_91_5644765   "1|1"         NA            "0/0"        
## HiC_scaffold_91_5867214   NA            "1|1"         "1|1"        
## HiC_scaffold_91_5867226   "0/0"         "1|1"         "1|1"        
## HiC_scaffold_91_7704263   "1|1"         "0/0"         NA           
## HiC_scaffold_91_7871360   NA            "1/1"         "0/0"        
## HiC_scaffold_91_8538014   "1/1"         NA            "0/0"        
## HiC_scaffold_91_13230485  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_91_28696118  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_91_28696625  "0/1"         NA            "0/0"        
## HiC_scaffold_91_42177482  "1/1"         "1|1"         "0/0"        
## HiC_scaffold_91_46813640  NA            "0/0"         NA           
## HiC_scaffold_92_23783035  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_92_23783036  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_92_24712793  "0/1"         NA            "1/1"        
## HiC_scaffold_92_28698258  "0/1"         "1|1"         "1/1"        
## HiC_scaffold_92_40691582  NA            "0/0"         "1/1"        
## HiC_scaffold_92_43967712  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_92_47147572  "1|1"         "1|1"         NA           
## HiC_scaffold_92_49042714  NA            NA            "1|1"        
## HiC_scaffold_92_49042715  NA            NA            "1|1"        
## HiC_scaffold_92_53634002  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_92_58211868  "0/0"         NA            NA           
## HiC_scaffold_92_60114155  "0/0"         NA            "0/0"        
## HiC_scaffold_92_63603483  NA            "0/0"         NA           
## HiC_scaffold_92_64797225  NA            "0/0"         NA           
## HiC_scaffold_92_68367476  "0|1"         "2|2"         "0/0"        
## HiC_scaffold_93_1912167   "0/0"         "0/1"         "0/0"        
## HiC_scaffold_93_2485978   "1/1"         NA            "0/0"        
## HiC_scaffold_93_3227638   NA            NA            NA           
## HiC_scaffold_93_3227641   NA            "0/0"         "0/0"        
## HiC_scaffold_93_13971208  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_93_13987080  "0/0"         NA            NA           
## HiC_scaffold_93_21125468  "1/1"         NA            "1/1"        
## HiC_scaffold_93_21845293  NA            "0/0"         NA           
## HiC_scaffold_93_21845310  NA            "1|1"         "0/0"        
## HiC_scaffold_93_21846342  NA            NA            "0/0"        
## HiC_scaffold_93_21846356  NA            NA            "1/1"        
## HiC_scaffold_93_22589723  NA            "0/1"         "0/1"        
## HiC_scaffold_93_22619278  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_93_22631258  "0/0"         "0/0"         NA           
## HiC_scaffold_93_22631266  "0/0"         "0/0"         NA           
## HiC_scaffold_94_3110102   "1/1"         "1/1"         NA           
## HiC_scaffold_94_3205919   "0/0"         NA            NA           
## HiC_scaffold_94_9023846   "0/0"         NA            NA           
## HiC_scaffold_94_11572820  NA            "1/1"         "0/0"        
## HiC_scaffold_94_12368532  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_94_42179418  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_94_42179519  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_94_51646206  NA            NA            "0/0"        
## HiC_scaffold_94_52781289  "1/1"         "0|1"         NA           
## HiC_scaffold_94_53790035  "0/0"         NA            NA           
## HiC_scaffold_94_53792738  "1|1"         "0/0"         "1/1"        
## HiC_scaffold_94_56768905  "0/0"         NA            "1|1"        
## HiC_scaffold_946_81276    NA            "0/0"         "0/0"        
## HiC_scaffold_95_3189690   "1/1"         NA            "1/1"        
## HiC_scaffold_95_4397298   NA            NA            "0/1"        
## HiC_scaffold_95_9469157   "0/0"         "1|1"         "1/1"        
## HiC_scaffold_95_10641411  NA            "1/1"         "0/0"        
## HiC_scaffold_95_10949821  "0/0"         "1/1"         NA           
## HiC_scaffold_95_12993394  "0/0"         "0|1"         NA           
## HiC_scaffold_95_15515793  "0/0"         NA            NA           
## HiC_scaffold_95_15608785  "0/0"         "0|1"         "0/0"        
## HiC_scaffold_95_15609137  NA            NA            "0/0"        
## HiC_scaffold_95_16295316  "0/0"         "0/0"         NA           
## HiC_scaffold_95_22656165  "0/0"         NA            NA           
## HiC_scaffold_95_25885727  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_96_10460019  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_96_27155785  "0/0"         "0/1"         NA           
## HiC_scaffold_96_37939434  NA            "0/0"         NA           
## HiC_scaffold_96_51115048  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_96_51116511  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_96_51915040  "0/0"         NA            "0/0"        
## HiC_scaffold_96_52681287  "1/1"         NA            NA           
## HiC_scaffold_96_53276519  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_97_1736926   NA            "1|1"         "0/0"        
## HiC_scaffold_97_1736994   "1|1"         NA            "0/0"        
## HiC_scaffold_97_3863543   "0/0"         "1/1"         "1/1"        
## HiC_scaffold_97_4200445   NA            "0/0"         "0/1"        
## HiC_scaffold_97_4799162   "0/0"         "0/0"         NA           
## HiC_scaffold_97_5027892   "1/1"         "0/0"         NA           
## HiC_scaffold_97_8007933   NA            "1/1"         "1|1"        
## HiC_scaffold_97_17997210  NA            "0/0"         "1|1"        
## HiC_scaffold_97_18604647  NA            "1/1"         NA           
## HiC_scaffold_97_20239636  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_98_15154096  "0/0"         "0/0"         NA           
## HiC_scaffold_98_22342667  "1/1"         NA            "1|1"        
## HiC_scaffold_98_22634293  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_98_22634294  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_98_22721138  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_98_22869378  "0/0"         NA            "0/0"        
## HiC_scaffold_98_24108405  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_98_27359592  "0|1"         NA            "0/0"        
## HiC_scaffold_98_28549834  NA            "1/1"         "0/0"        
## HiC_scaffold_98_28867520  NA            "0/0"         "0|1"        
## HiC_scaffold_98_28867524  NA            "0/0"         "0|1"        
## HiC_scaffold_98_29431717  NA            NA            "0/0"        
## HiC_scaffold_98_29675109  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_99_1163244   "0/0"         "0/0"         NA           
## HiC_scaffold_99_1451611   "1/1"         NA            NA           
## HiC_scaffold_99_2021961   "0/0"         "0/0"         NA           
## HiC_scaffold_99_5134392   NA            "0/0"         "0/0"        
## HiC_scaffold_99_5239109   NA            NA            "1/1"        
## HiC_scaffold_99_6917738   "0/0"         NA            NA           
## HiC_scaffold_99_11221970  NA            NA            "0|1"        
## HiC_scaffold_99_25982503  "1/1"         NA            "1|1"        
##                           Tank_3_Crab_1 Tank_3_Crab_2 Tank_3_Crab_3
## HiC_scaffold_1_2523394    NA            "1/1"         "1/1"        
## HiC_scaffold_1_2542157    "1/1"         "1/1"         "0/0"        
## HiC_scaffold_1_2647806    "1/1"         "0/0"         "0/1"        
## HiC_scaffold_1_2970226    "1|1"         "0/0"         "0/0"        
## HiC_scaffold_1_3329447    "0/0"         "0/0"         "0/0"        
## HiC_scaffold_1_3795100    "1|1"         "0|1"         "1|1"        
## HiC_scaffold_10_2221345   "0|1"         "1|1"         "0/0"        
## HiC_scaffold_10_2299490   NA            NA            "0/0"        
## HiC_scaffold_10_2565301   "1/1"         NA            "0/1"        
## HiC_scaffold_10_3864355   "1/1"         NA            "0/0"        
## HiC_scaffold_10_4319900   "0/0"         NA            "0/0"        
## HiC_scaffold_10_4319907   "0/0"         NA            "0/0"        
## HiC_scaffold_10_5404579   "0/0"         NA            "0/0"        
## HiC_scaffold_10_5843373   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_100_854947   "1|1"         "0/0"         NA           
## HiC_scaffold_100_1070817  "0|1"         NA            "1/1"        
## HiC_scaffold_100_2002094  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_100_2002097  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_100_2010331  NA            NA            "0/0"        
## HiC_scaffold_100_5186498  "1/1"         NA            "1/1"        
## HiC_scaffold_100_5828477  "0/0"         NA            "1/1"        
## HiC_scaffold_100_6470419  NA            "0/0"         "0|1"        
## HiC_scaffold_100_6739225  NA            "0/0"         NA           
## HiC_scaffold_100_6739258  NA            "0/0"         "0/0"        
## HiC_scaffold_100_6739264  NA            "0/0"         "0/0"        
## HiC_scaffold_100_6907177  NA            NA            NA           
## HiC_scaffold_100_8384481  NA            "0/0"         "0|1"        
## HiC_scaffold_100_8384495  NA            "0/0"         "0|1"        
## HiC_scaffold_100_9451470  "0/0"         NA            "1/1"        
## HiC_scaffold_100_10464574 NA            NA            "0/1"        
## HiC_scaffold_100_11934792 "0/0"         "0/1"         "0/0"        
## HiC_scaffold_100_11980177 "1/1"         NA            "1|1"        
## HiC_scaffold_100_18465760 "0/0"         "1|1"         NA           
## HiC_scaffold_100_18465762 "0/0"         "1|1"         NA           
## HiC_scaffold_100_18466205 "0/2"         NA            "3|3"        
## HiC_scaffold_100_31738115 NA            "0/1"         "1/1"        
## HiC_scaffold_100_44227362 "0/0"         "0/0"         "0/0"        
## HiC_scaffold_101_12808961 "1|1"         NA            "0/0"        
## HiC_scaffold_101_13897149 "0/0"         "1/1"         "1/1"        
## HiC_scaffold_101_18337279 NA            NA            "1/1"        
## HiC_scaffold_101_20800167 "1/1"         "1/1"         "0/0"        
## HiC_scaffold_102_2260041  "0/0"         NA            "1/1"        
## HiC_scaffold_102_8734519  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_102_10233999 "0/0"         NA            "0/0"        
## HiC_scaffold_102_11446042 NA            "0/1"         "0/0"        
## HiC_scaffold_102_15918694 "0/0"         "0/0"         "0/0"        
## HiC_scaffold_102_15935667 NA            "1/1"         "0/0"        
## HiC_scaffold_102_17442643 "1/1"         "0/0"         "0/0"        
## HiC_scaffold_102_17608969 NA            NA            "0/1"        
## HiC_scaffold_102_20180185 "1/1"         "1/1"         "0/1"        
## HiC_scaffold_102_24788723 "0/0"         NA            NA           
## HiC_scaffold_102_25423729 "1|1"         NA            "1|1"        
## HiC_scaffold_102_39755142 "1/1"         "0/1"         "0/1"        
## HiC_scaffold_102_52046978 "1/1"         NA            "0/0"        
## HiC_scaffold_1027_34152   "0/0"         "1/1"         "0|1"        
## HiC_scaffold_103_601715   NA            "0/1"         "0/0"        
## HiC_scaffold_103_2891384  NA            NA            "0/1"        
## HiC_scaffold_103_8191270  "2|2"         "0/0"         "0/1"        
## HiC_scaffold_103_9521272  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_103_14768909 NA            "0/0"         "1|1"        
## HiC_scaffold_103_19312119 NA            "1|1"         "1|1"        
## HiC_scaffold_103_21284866 "0/0"         NA            "0/0"        
## HiC_scaffold_103_31428453 NA            "0/0"         "0|1"        
## HiC_scaffold_103_42567396 NA            NA            "1/1"        
## HiC_scaffold_103_45921571 "0/0"         NA            "0/0"        
## HiC_scaffold_103_45921573 "0/0"         NA            "0/0"        
## HiC_scaffold_103_49592022 "0/0"         NA            "1|1"        
## HiC_scaffold_103_49620132 "1|1"         "0/0"         "1|1"        
## HiC_scaffold_103_50440915 NA            "0/0"         "1|1"        
## HiC_scaffold_103_51944137 "0/1"         "0/0"         "0/0"        
## HiC_scaffold_103_54308582 "0/0"         NA            "0/1"        
## HiC_scaffold_103_54424067 NA            "0/0"         "1|1"        
## HiC_scaffold_103_56932900 "1/1"         NA            "1/1"        
## HiC_scaffold_103_57470264 "1|1"         NA            "0/0"        
## HiC_scaffold_104_7771140  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_104_9103028  "1/1"         NA            "1/1"        
## HiC_scaffold_104_10633168 "0/0"         NA            NA           
## HiC_scaffold_104_18917031 "0/1"         "1/1"         "0/0"        
## HiC_scaffold_104_20851902 "1/1"         "0/0"         "0/0"        
## HiC_scaffold_104_24451803 "1/1"         "0/0"         "0/1"        
## HiC_scaffold_104_28597688 "0/0"         "1/1"         "0/1"        
## HiC_scaffold_104_40927999 NA            "1/1"         NA           
## HiC_scaffold_104_46490074 "0/0"         NA            "0/1"        
## HiC_scaffold_104_49759053 NA            NA            "0/0"        
## HiC_scaffold_104_57267896 "1/1"         "0/0"         "0/0"        
## HiC_scaffold_104_62570010 "0/0"         "0/0"         "0/0"        
## HiC_scaffold_11_32804173  "0/0"         NA            "1/1"        
## HiC_scaffold_11_34516508  "0/0"         NA            "1/1"        
## HiC_scaffold_11_35332996  "0/0"         NA            "0/1"        
## HiC_scaffold_11_35904027  "1/1"         NA            NA           
## HiC_scaffold_11_41539793  "1|1"         NA            NA           
## HiC_scaffold_11_41604080  "1|1"         NA            "1|1"        
## HiC_scaffold_11_42855323  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_11_45339409  NA            "0/0"         "0/0"        
## HiC_scaffold_11_45339410  NA            "1|1"         "1/1"        
## HiC_scaffold_11_47544035  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_12_7515164   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_12_12640100  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_12_12826705  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_12_14899285  NA            "1/1"         "0/0"        
## HiC_scaffold_12_17465672  NA            NA            "0/0"        
## HiC_scaffold_12_22770710  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_12_32318964  "1|1"         NA            NA           
## HiC_scaffold_12_35136373  NA            "0/0"         "0/0"        
## HiC_scaffold_12_40687860  "0/0"         "0/0"         NA           
## HiC_scaffold_13_2938168   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_13_20350974  NA            NA            "0/0"        
## HiC_scaffold_13_27759554  "0/0"         NA            "0/0"        
## HiC_scaffold_13_28146828  "2|2"         "0/0"         "1|1"        
## HiC_scaffold_13_28146830  "2|2"         "0/0"         "1|1"        
## HiC_scaffold_13_28925343  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_13_31913129  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_13_32078924  NA            NA            "1|1"        
## HiC_scaffold_13_33864805  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_13_34892542  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_13_34893103  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_13_35762551  "1|1"         "1|1"         "0|1"        
## HiC_scaffold_13_35881745  "1|1"         NA            "1|1"        
## HiC_scaffold_13_35881749  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_14_3843214   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_14_25884262  "1|1"         NA            "0/0"        
## HiC_scaffold_14_27050415  NA            NA            NA           
## HiC_scaffold_14_27118495  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_14_27277222  "0/0"         NA            "1/1"        
## HiC_scaffold_14_29215814  NA            NA            NA           
## HiC_scaffold_15_2460398   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_15_2462980   "1/1"         NA            NA           
## HiC_scaffold_15_2467289   "1/1"         NA            "1/1"        
## HiC_scaffold_15_5669141   NA            "1/1"         "1/1"        
## HiC_scaffold_15_13700694  "0/1"         "0/1"         "0/0"        
## HiC_scaffold_15_17825275  NA            "1|1"         NA           
## HiC_scaffold_15_19938475  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_15_23865956  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_15_28837774  NA            NA            "0/0"        
## HiC_scaffold_15_28837810  NA            NA            "1/1"        
## HiC_scaffold_15_28837823  NA            "0/0"         "0/0"        
## HiC_scaffold_15_28837835  NA            NA            "0|1"        
## HiC_scaffold_15_28837841  NA            NA            "0|1"        
## HiC_scaffold_15_28837854  NA            "0/0"         "0/0"        
## HiC_scaffold_15_34827832  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_15_34893807  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_15_35327348  "1/1"         "0/1"         "0/0"        
## HiC_scaffold_15_42161112  "0|0"         NA            "0/0"        
## HiC_scaffold_15_42164926  NA            "0/0"         "0|1"        
## HiC_scaffold_15_42164946  NA            "0/0"         "1/1"        
## HiC_scaffold_15_46289572  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_15_50591576  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_15_50759128  NA            "0/0"         "1/1"        
## HiC_scaffold_15_51188336  NA            "0/0"         "1|1"        
## HiC_scaffold_15_54726640  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_15_54788235  NA            NA            "0/0"        
## HiC_scaffold_15_56162375  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_15_61091106  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_15_61464359  NA            "1/1"         "1/1"        
## HiC_scaffold_15_61510386  "1/1"         NA            "1/1"        
## HiC_scaffold_15_62309788  NA            "0/0"         "0/0"        
## HiC_scaffold_15_62309793  NA            "0/0"         "0/0"        
## HiC_scaffold_15_62771254  NA            "1/1"         "0/0"        
## HiC_scaffold_15_63493927  NA            NA            "1/1"        
## HiC_scaffold_15_64997502  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_15_65007865  "0|1"         "1|1"         "1|1"        
## HiC_scaffold_15_65007879  "0|1"         "1|1"         "0/0"        
## HiC_scaffold_15_66038529  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_15_69811281  "1/1"         "1|1"         "1/1"        
## HiC_scaffold_16_14205925  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_16_30404047  "0/0"         "0|1"         "0/0"        
## HiC_scaffold_16_57413288  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_16_63687578  "0/0"         NA            "0/0"        
## HiC_scaffold_16_74138787  "0/0"         NA            "0/0"        
## HiC_scaffold_16_74140106  "0/0"         NA            "0/0"        
## HiC_scaffold_16_76276015  NA            NA            "0/0"        
## HiC_scaffold_17_11390873  "1|1"         "1|1"         "0|1"        
## HiC_scaffold_17_12551128  "0/1"         NA            "1/1"        
## HiC_scaffold_17_16615612  NA            NA            "0/0"        
## HiC_scaffold_17_18838093  NA            NA            "0/0"        
## HiC_scaffold_17_22801072  "0/1"         NA            "0/0"        
## HiC_scaffold_17_23788599  "0/1"         NA            "0/0"        
## HiC_scaffold_17_29383895  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_17_29618771  "0/0"         NA            "0/1"        
## HiC_scaffold_17_29976139  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_17_31107213  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_17_32493792  NA            "0|1"         "0/1"        
## HiC_scaffold_17_33732050  NA            "0/0"         "1/1"        
## HiC_scaffold_17_33801314  "0/0"         NA            "1|1"        
## HiC_scaffold_17_34081889  "1/1"         NA            "1/1"        
## HiC_scaffold_18_227565    "0/0"         "0/1"         "1/1"        
## HiC_scaffold_18_1213486   "1/1"         NA            "1/1"        
## HiC_scaffold_18_1701312   NA            "0/0"         "0/0"        
## HiC_scaffold_18_3506437   "1/1"         NA            "0/1"        
## HiC_scaffold_18_6304978   "1/1"         "0/0"         "1/1"        
## HiC_scaffold_18_6351493   "0/1"         "1/1"         "1/1"        
## HiC_scaffold_18_6358009   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_18_10770701  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_18_13342858  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_18_20045832  "0/0"         NA            "0/0"        
## HiC_scaffold_18_22682683  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_18_26337790  NA            "1|1"         "0/0"        
## HiC_scaffold_18_48929148  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_18_51490626  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_18_53723137  "0/0"         NA            "0/1"        
## HiC_scaffold_18_54496637  NA            NA            "1|1"        
## HiC_scaffold_18_55294388  NA            NA            "1/1"        
## HiC_scaffold_19_279726    "1/1"         "0/1"         NA           
## HiC_scaffold_19_6426572   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_19_6575887   NA            "1|1"         "1|1"        
## HiC_scaffold_19_7755254   "0/0"         NA            "0/0"        
## HiC_scaffold_19_9301421   NA            NA            NA           
## HiC_scaffold_19_9357388   "1|1"         NA            "1|1"        
## HiC_scaffold_19_9778841   "1/1"         NA            "1/1"        
## HiC_scaffold_19_10928976  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_19_10928980  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_19_10928982  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_19_11106347  NA            "0/0"         "0/0"        
## HiC_scaffold_19_11590139  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_19_11665300  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_19_14793640  NA            "1/1"         "1/1"        
## HiC_scaffold_19_22112743  NA            NA            "0/0"        
## HiC_scaffold_19_25473671  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_19_25473692  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_19_28110829  "1|1"         NA            NA           
## HiC_scaffold_19_28465002  NA            NA            "1/1"        
## HiC_scaffold_19_28465167  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_19_30106869  NA            "1|1"         "0/1"        
## HiC_scaffold_19_52538858  NA            "1/1"         "0/0"        
## HiC_scaffold_19_52596196  "1/1"         NA            "0|1"        
## HiC_scaffold_19_53482993  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_19_54312637  NA            "1/1"         "1/1"        
## HiC_scaffold_19_59345841  "1|1"         NA            "1|1"        
## HiC_scaffold_2_3296144    "1|1"         "1|1"         "1|1"        
## HiC_scaffold_2_3418589    "0/0"         "0/1"         "0/0"        
## HiC_scaffold_2_3864060    NA            "0/0"         "0/1"        
## HiC_scaffold_2_4104755    "0/0"         "0/0"         NA           
## HiC_scaffold_2_4104758    "0/0"         "0/0"         NA           
## HiC_scaffold_2_8316721    "1|1"         NA            "0/1"        
## HiC_scaffold_2_9098999    "0/0"         NA            "1/1"        
## HiC_scaffold_2_10457537   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_2_19048125   "0/0"         "1/1"         "1/1"        
## HiC_scaffold_2_21748201   NA            "1/1"         "1/1"        
## HiC_scaffold_2_33187764   NA            NA            "0/0"        
## HiC_scaffold_2_33187770   NA            NA            "0/0"        
## HiC_scaffold_2_33187959   NA            NA            NA           
## HiC_scaffold_2_41603929   "1/1"         "0/1"         "1/1"        
## HiC_scaffold_2_52233191   "0/0"         NA            "0/0"        
## HiC_scaffold_2_52400748   "1/1"         NA            "1/1"        
## HiC_scaffold_2_52403793   NA            "1|1"         "1|1"        
## HiC_scaffold_2_52799130   "1/1"         "1|1"         "1/1"        
## HiC_scaffold_20_10332897  NA            "0/0"         "0/1"        
## HiC_scaffold_20_17198418  "1|1"         NA            "0/0"        
## HiC_scaffold_20_17915398  "0/0"         NA            NA           
## HiC_scaffold_20_18872955  NA            NA            "0/0"        
## HiC_scaffold_20_19055301  NA            "1/1"         "1/1"        
## HiC_scaffold_20_19150094  "0/0"         NA            "1/1"        
## HiC_scaffold_20_20651022  NA            NA            "0/1"        
## HiC_scaffold_20_22651296  "1/1"         "0/1"         "0/1"        
## HiC_scaffold_21_2009156   NA            NA            "0|1"        
## HiC_scaffold_21_2435648   "0/0"         NA            "1/1"        
## HiC_scaffold_21_7164210   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_21_9786512   "0/0"         NA            "0/0"        
## HiC_scaffold_21_12424922  NA            "1/1"         "1/1"        
## HiC_scaffold_21_17966833  "1/1"         NA            "1/1"        
## HiC_scaffold_21_19025429  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_21_20058318  "1/1"         "0/0"         NA           
## HiC_scaffold_21_20562855  NA            NA            "0/1"        
## HiC_scaffold_21_20661860  "1|1"         "0|1"         "0/0"        
## HiC_scaffold_21_20895395  "1|1"         "1|1"         "0|1"        
## HiC_scaffold_21_21158811  NA            NA            "1|1"        
## HiC_scaffold_21_22250857  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_21_22250866  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_21_22257737  "1/1"         NA            "0/1"        
## HiC_scaffold_21_22644667  "0/0"         NA            "1|1"        
## HiC_scaffold_21_22644673  "0/0"         NA            "1|1"        
## HiC_scaffold_21_22666888  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_21_23905416  "0/0"         NA            "1|1"        
## HiC_scaffold_21_23981651  NA            NA            "1|1"        
## HiC_scaffold_21_24287068  NA            NA            "0/0"        
## HiC_scaffold_21_30798434  "1|1"         "0/0"         "0/1"        
## HiC_scaffold_21_35006232  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_21_35779294  "0/0"         NA            "0/1"        
## HiC_scaffold_22_124910    NA            "1/1"         "0/1"        
## HiC_scaffold_22_751023    NA            "0/0"         "0/1"        
## HiC_scaffold_22_1042644   "0/0"         NA            "1|1"        
## HiC_scaffold_22_1044708   "0/1"         NA            "1/1"        
## HiC_scaffold_22_2174911   "1|1"         "1/1"         "1/1"        
## HiC_scaffold_22_3431122   "1|1"         NA            NA           
## HiC_scaffold_22_3446787   "0|0"         "0/0"         "0|0"        
## HiC_scaffold_22_3451756   "0|1"         "1|1"         "1/1"        
## HiC_scaffold_22_3720435   "1/1"         NA            "1/1"        
## HiC_scaffold_22_4065466   NA            "1|1"         "0/0"        
## HiC_scaffold_22_4739889   "0/0"         NA            "0/2"        
## HiC_scaffold_22_4918263   "0/0"         "1|1"         "1|1"        
## HiC_scaffold_22_5750008   NA            NA            "1/1"        
## HiC_scaffold_22_5769942   "0/0"         NA            "0/0"        
## HiC_scaffold_22_28264522  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_22_28265115  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_22_29205851  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_22_29822340  "1/1"         NA            "0/0"        
## HiC_scaffold_22_30797357  NA            NA            "0/0"        
## HiC_scaffold_22_32042610  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_23_11215327  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_23_27081333  "1/1"         "0|1"         "1/1"        
## HiC_scaffold_23_28672255  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_23_29218828  "1/1"         "0/0"         NA           
## HiC_scaffold_23_32528768  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_23_32669383  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_23_33199663  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_23_33245843  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_23_40824545  "0|1"         "0|1"         "0/0"        
## HiC_scaffold_23_41504669  NA            "0/0"         "0/0"        
## HiC_scaffold_24_16622654  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_24_16622681  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_24_19851560  "1|1"         "0|1"         "1|1"        
## HiC_scaffold_24_20590563  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_24_27745754  "1/1"         NA            NA           
## HiC_scaffold_24_28763699  NA            "1|1"         "1|1"        
## HiC_scaffold_24_28763703  NA            "1|1"         "1|1"        
## HiC_scaffold_25_4135969   "0/0"         NA            "0/0"        
## HiC_scaffold_25_4201677   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_25_5872831   "0/0"         NA            "0/0"        
## HiC_scaffold_25_6879627   NA            NA            "0/0"        
## HiC_scaffold_25_8172813   "1|1"         "1/1"         "0/1"        
## HiC_scaffold_25_9969507   "1|1"         "1/1"         NA           
## HiC_scaffold_25_10691336  NA            "0/0"         "0|1"        
## HiC_scaffold_25_21286462  "1/1"         NA            "0/0"        
## HiC_scaffold_26_4086662   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_26_7539671   "1|1"         NA            "1|1"        
## HiC_scaffold_26_8348511   NA            NA            "1/1"        
## HiC_scaffold_26_9043748   "1|1"         "1|1"         "0|1"        
## HiC_scaffold_26_9045655   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_26_11253181  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_26_17828344  "1/1"         NA            "1/1"        
## HiC_scaffold_26_17932520  NA            NA            "1/1"        
## HiC_scaffold_26_17941459  NA            "0/0"         "0/0"        
## HiC_scaffold_26_17960877  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_26_18284041  NA            NA            "0/0"        
## HiC_scaffold_26_18288701  "0|1"         "1|1"         "0|1"        
## HiC_scaffold_26_18294422  "0/0"         NA            "0/1"        
## HiC_scaffold_26_21307365  NA            NA            "1/1"        
## HiC_scaffold_26_22159924  "1/1"         NA            "1/1"        
## HiC_scaffold_26_22161535  NA            "0/0"         "1/1"        
## HiC_scaffold_26_24794176  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_26_28538113  NA            NA            NA           
## HiC_scaffold_26_29031357  NA            NA            "1/1"        
## HiC_scaffold_26_29163462  "0/0"         NA            "0/0"        
## HiC_scaffold_26_42631018  "1|1"         NA            "0/0"        
## HiC_scaffold_26_42634814  "1/1"         "0/0"         NA           
## HiC_scaffold_26_43483190  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_26_49955889  "0/1"         NA            "0/1"        
## HiC_scaffold_26_58342510  "0/0"         NA            "1|1"        
## HiC_scaffold_27_1496120   "0/0"         "0/1"         "0/0"        
## HiC_scaffold_27_1947057   "0/0"         NA            "1|1"        
## HiC_scaffold_27_2359058   NA            "0/0"         "1|1"        
## HiC_scaffold_27_2699645   "1/1"         NA            "0/1"        
## HiC_scaffold_27_4425475   NA            "0|1"         "0/0"        
## HiC_scaffold_27_7539469   "0/0"         "0/0"         "0/1"        
## HiC_scaffold_27_7777122   NA            "0/0"         "0/0"        
## HiC_scaffold_27_16657070  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_27_24539255  "0|0"         NA            NA           
## HiC_scaffold_27_34642359  NA            "0/0"         "1|1"        
## HiC_scaffold_27_34647277  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_27_35380535  "1/1"         NA            "1/1"        
## HiC_scaffold_27_35383230  NA            "1|1"         "0/0"        
## HiC_scaffold_28_21261390  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_28_24490442  "1|1"         NA            NA           
## HiC_scaffold_28_25601927  "1/1"         NA            "0/0"        
## HiC_scaffold_28_31793968  NA            "2|2"         "0/0"        
## HiC_scaffold_28_32126687  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_28_34779518  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_28_36042491  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_28_36692361  NA            NA            NA           
## HiC_scaffold_28_38672993  "1|1"         "0/0"         NA           
## HiC_scaffold_28_39640526  "0/0"         NA            "1/1"        
## HiC_scaffold_28_40169242  NA            "0/0"         NA           
## HiC_scaffold_28_41059640  NA            NA            "1/1"        
## HiC_scaffold_28_42514830  "0/1"         NA            NA           
## HiC_scaffold_28_42601570  "0/1"         NA            "0/1"        
## HiC_scaffold_28_42601585  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_28_43018803  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_28_43036165  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_29_344317    "0/0"         "1/1"         "0/1"        
## HiC_scaffold_29_3811176   NA            NA            "1|1"        
## HiC_scaffold_29_6073993   "0|1"         "0/0"         "0/0"        
## HiC_scaffold_29_6415222   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_29_8224424   "0/0"         NA            "0/1"        
## HiC_scaffold_29_11153624  "0/0"         "1/1"         NA           
## HiC_scaffold_29_11153712  NA            "1/1"         "1/1"        
## HiC_scaffold_29_11167966  NA            "0/0"         "0/0"        
## HiC_scaffold_29_11491468  NA            NA            "0/0"        
## HiC_scaffold_29_12103558  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_29_14279322  "0/0"         NA            "0/1"        
## HiC_scaffold_29_14913907  NA            "0/0"         "0/0"        
## HiC_scaffold_29_16378276  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_29_20635937  "0/1"         "0/0"         "0/1"        
## HiC_scaffold_29_20636787  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_29_22560215  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_29_22561144  "1/1"         NA            "0/0"        
## HiC_scaffold_29_24017849  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_29_31603590  "1/1"         NA            "0/0"        
## HiC_scaffold_3_21670751   "0/0"         "0/0"         "0/1"        
## HiC_scaffold_3_24747014   "0/1"         "1/1"         "0/1"        
## HiC_scaffold_3_27861792   "0/0"         "0/0"         "0/1"        
## HiC_scaffold_3_28057869   "0/0"         NA            "0/0"        
## HiC_scaffold_3_28441436   "0/0"         NA            "1/1"        
## HiC_scaffold_3_28694380   NA            NA            "1|1"        
## HiC_scaffold_3_31361023   NA            NA            "0/1"        
## HiC_scaffold_3_31960572   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_3_32157169   "0/0"         "0/0"         "0/1"        
## HiC_scaffold_3_32159152   "0/1"         "0/0"         "0/1"        
## HiC_scaffold_3_34124237   NA            "1/1"         "0/0"        
## HiC_scaffold_30_14199802  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_30_16052331  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_30_19914075  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_30_20688783  "1/1"         NA            "1/1"        
## HiC_scaffold_30_21446076  NA            "0/0"         "0/0"        
## HiC_scaffold_30_21598563  "1/1"         "0/1"         "0/0"        
## HiC_scaffold_30_22155728  NA            "0/0"         "0|1"        
## HiC_scaffold_31_687411    NA            NA            "0/0"        
## HiC_scaffold_31_3224722   NA            "0/0"         "0/0"        
## HiC_scaffold_31_3574854   "0/0"         "0/1"         "1/1"        
## HiC_scaffold_31_5899551   NA            "1/1"         "1/1"        
## HiC_scaffold_31_5911491   "0/0"         NA            "0/0"        
## HiC_scaffold_31_6297680   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_31_12394016  "1|1"         "1/1"         NA           
## HiC_scaffold_31_12394040  "0/0"         "0/0"         NA           
## HiC_scaffold_31_18612650  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_32_4446859   NA            "0/0"         "0/1"        
## HiC_scaffold_32_5274796   "0/0"         NA            "1/1"        
## HiC_scaffold_32_5275108   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_32_5282358   "0/0"         "0/1"         "0/0"        
## HiC_scaffold_32_5450203   "1|1"         NA            "0/0"        
## HiC_scaffold_32_44200178  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_33_638523    "0/0"         "1|1"         "1/1"        
## HiC_scaffold_33_44489563  "0/0"         NA            "0/0"        
## HiC_scaffold_33_44489988  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_33_47080180  "0/0"         NA            "0/0"        
## HiC_scaffold_33_47495907  "1|1"         NA            "0/0"        
## HiC_scaffold_33_51865876  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_34_1096982   "1/1"         "0/1"         "0/0"        
## HiC_scaffold_34_6091943   NA            NA            "1/1"        
## HiC_scaffold_34_6100160   "1|1"         NA            "1|1"        
## HiC_scaffold_34_24368584  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_35_3233120   "0/0"         "0/1"         "0/1"        
## HiC_scaffold_35_3253574   "1/1"         "0/1"         "0/1"        
## HiC_scaffold_35_5512296   "0/0"         NA            "0/1"        
## HiC_scaffold_35_15114788  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_35_21214090  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_35_21462564  "0/0"         "0/0"         NA           
## HiC_scaffold_35_22746783  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_35_22747085  NA            NA            "1|1"        
## HiC_scaffold_35_23059580  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_35_23158882  "1/1"         NA            "1/1"        
## HiC_scaffold_35_23261143  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_35_24403602  "0/0"         "0/0"         "0|1"        
## HiC_scaffold_35_24403620  NA            NA            "1|1"        
## HiC_scaffold_35_24993986  NA            "1|1"         "1/1"        
## HiC_scaffold_35_24993998  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_36_1538038   NA            NA            "0/0"        
## HiC_scaffold_36_2464728   "0/1"         "0/0"         "1/1"        
## HiC_scaffold_36_5489050   "0/0"         "0/1"         "1/1"        
## HiC_scaffold_36_9673981   "0|1"         NA            "0/1"        
## HiC_scaffold_36_9674127   "1/1"         "0/0"         "1/1"        
## HiC_scaffold_36_9674756   NA            "0/0"         "1/1"        
## HiC_scaffold_36_9676329   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_36_12304516  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_36_12515555  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_36_13092647  "0/0"         NA            NA           
## HiC_scaffold_36_13766994  "0/0"         NA            "1/1"        
## HiC_scaffold_36_14567741  NA            NA            "1/1"        
## HiC_scaffold_36_15530578  NA            "1|1"         "1|1"        
## HiC_scaffold_37_679894    NA            NA            "1/1"        
## HiC_scaffold_37_916693    NA            "0/0"         "1/1"        
## HiC_scaffold_37_928146    "0/0"         "0/0"         "1/1"        
## HiC_scaffold_37_1256768   NA            NA            "0/0"        
## HiC_scaffold_37_1270034   "1/1"         NA            "1/1"        
## HiC_scaffold_37_1770997   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_37_1798298   "1/1"         NA            "0|1"        
## HiC_scaffold_37_2010342   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_37_2141526   NA            NA            "0/0"        
## HiC_scaffold_37_3952190   "0/0"         NA            "0|1"        
## HiC_scaffold_37_3952215   "0/0"         NA            "0|1"        
## HiC_scaffold_37_9915037   NA            "1/1"         "0/0"        
## HiC_scaffold_38_5383430   NA            "0/0"         "0/0"        
## HiC_scaffold_38_5668363   NA            "0/1"         "0/0"        
## HiC_scaffold_38_5879849   "1/1"         "0/0"         "0|1"        
## HiC_scaffold_38_5880155   "1/1"         "1/1"         "0/1"        
## HiC_scaffold_38_10612790  "0/0"         NA            NA           
## HiC_scaffold_38_11940240  "0/0"         NA            "1/1"        
## HiC_scaffold_38_12878826  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_38_12959698  "0/0"         NA            "0/1"        
## HiC_scaffold_38_13087368  NA            NA            NA           
## HiC_scaffold_38_13480648  "1/1"         NA            "0|1"        
## HiC_scaffold_38_13965243  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_38_14089955  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_38_14408072  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_38_14931216  "0|1"         "1/1"         "1/1"        
## HiC_scaffold_38_14978356  "0/0"         NA            "0/0"        
## HiC_scaffold_38_14978367  "0/0"         NA            "0/0"        
## HiC_scaffold_38_15292863  NA            NA            "1/1"        
## HiC_scaffold_38_15306135  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_38_16077506  NA            "0/0"         "0/0"        
## HiC_scaffold_38_16138965  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_38_16226040  NA            NA            "0/0"        
## HiC_scaffold_39_1393769   NA            "1|1"         "1|1"        
## HiC_scaffold_39_2014970   "0/0"         "0/0"         "0|1"        
## HiC_scaffold_39_2014982   "0/0"         NA            "0|1"        
## HiC_scaffold_39_2014985   "0/0"         NA            "0|1"        
## HiC_scaffold_39_2426443   "0/0"         "0|1"         "1|1"        
## HiC_scaffold_39_2485330   "0/0"         NA            "1/1"        
## HiC_scaffold_39_3350506   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_39_5897388   "1|1"         "0/0"         "1|1"        
## HiC_scaffold_39_17631133  "0/0"         NA            "0/0"        
## HiC_scaffold_4_12107187   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_4_18241670   NA            NA            "1|1"        
## HiC_scaffold_4_18241723   NA            "1|1"         NA           
## HiC_scaffold_4_22418566   "0/0"         NA            "0|1"        
## HiC_scaffold_4_27899990   NA            "0/0"         NA           
## HiC_scaffold_4_35575118   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_4_38000967   "1/1"         NA            "1/1"        
## HiC_scaffold_4_50654021   "0/0"         NA            "1|1"        
## HiC_scaffold_40_2243415   "0/0"         NA            NA           
## HiC_scaffold_40_3000572   NA            "0/0"         "0/0"        
## HiC_scaffold_40_3014177   NA            "0/0"         "1|1"        
## HiC_scaffold_40_3027900   "1|1"         "0/0"         NA           
## HiC_scaffold_40_3143834   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_40_3843942   "1/1"         NA            "0/0"        
## HiC_scaffold_40_3847620   "0/0"         NA            "1|1"        
## HiC_scaffold_40_3891007   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_40_3920667   "2/2"         "2/2"         NA           
## HiC_scaffold_40_4177963   "1/1"         "0/0"         "0/1"        
## HiC_scaffold_40_4819107   "0/1"         "0/0"         "0/1"        
## HiC_scaffold_40_4819834   "0/0"         "1|1"         "1|1"        
## HiC_scaffold_40_5788271   "1/1"         "0/0"         "0|0"        
## HiC_scaffold_40_5965269   NA            "1|1"         "1|1"        
## HiC_scaffold_40_6204154   "0/0"         NA            NA           
## HiC_scaffold_40_8387917   NA            "0/1"         "0|1"        
## HiC_scaffold_41_3235384   "0/0"         NA            "0/0"        
## HiC_scaffold_41_3583000   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_41_5334504   "1/1"         "1|1"         "1|1"        
## HiC_scaffold_41_5387631   NA            NA            "0/0"        
## HiC_scaffold_41_6423426   NA            "0/0"         "0/0"        
## HiC_scaffold_41_14359947  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_41_24007593  "0/0"         "0/0"         "0|1"        
## HiC_scaffold_41_26225447  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_41_28626484  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_41_28660620  NA            NA            "0/0"        
## HiC_scaffold_41_31007688  "1/1"         NA            "1/1"        
## HiC_scaffold_42_1131084   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_42_1818523   NA            "0/0"         "0/1"        
## HiC_scaffold_42_2165002   "0/0"         "2/2"         "0/0"        
## HiC_scaffold_42_2711332   "0/0"         "1|1"         "1|1"        
## HiC_scaffold_42_6142699   "1/1"         NA            "1/1"        
## HiC_scaffold_42_6744976   "0/0"         NA            "0/1"        
## HiC_scaffold_42_8066919   "0/0"         NA            "0/0"        
## HiC_scaffold_42_8068292   NA            "0|1"         NA           
## HiC_scaffold_42_12487888  "0/1"         "0|1"         NA           
## HiC_scaffold_42_41366687  "1/1"         NA            "1/1"        
## HiC_scaffold_42_47313337  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_42_47313338  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_42_50784971  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_42_50784977  "1|1"         NA            "1|1"        
## HiC_scaffold_42_50784981  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_42_51916989  "1/1"         NA            "1/1"        
## HiC_scaffold_43_3842003   NA            "1/1"         "0/1"        
## HiC_scaffold_43_14140861  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_43_15053605  NA            "0/1"         "1/1"        
## HiC_scaffold_43_17289945  NA            "0/0"         "0/0"        
## HiC_scaffold_43_29967704  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_43_35745831  NA            "0/0"         "0/0"        
## HiC_scaffold_43_37627949  "0/0"         NA            NA           
## HiC_scaffold_43_37628126  "0/1"         "0/1"         NA           
## HiC_scaffold_43_44017118  "1/1"         NA            "0/0"        
## HiC_scaffold_43_55124138  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_43_60107326  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_43_61359386  NA            NA            "0/0"        
## HiC_scaffold_43_61702593  "0/0"         NA            "1|1"        
## HiC_scaffold_43_61702606  "0/0"         NA            "1|1"        
## HiC_scaffold_43_61702721  "1|1"         NA            "0/0"        
## HiC_scaffold_43_61702738  "0/0"         NA            "0/1"        
## HiC_scaffold_43_62511703  NA            "0/0"         "1|1"        
## HiC_scaffold_43_64069457  "0/0"         NA            "1/1"        
## HiC_scaffold_43_64577269  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_44_1920144   "1|1"         NA            "0/0"        
## HiC_scaffold_44_2148035   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_44_2568167   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_45_4180070   NA            "1/1"         "1/1"        
## HiC_scaffold_45_4797754   NA            NA            NA           
## HiC_scaffold_45_5911123   "1|1"         NA            NA           
## HiC_scaffold_45_6958990   NA            NA            "1/1"        
## HiC_scaffold_45_8516216   "1|1"         "0/0"         "1|1"        
## HiC_scaffold_45_10191213  "0|1"         NA            NA           
## HiC_scaffold_45_12005885  "0/0"         NA            NA           
## HiC_scaffold_45_12006766  "0/1"         NA            "1|1"        
## HiC_scaffold_45_24736172  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_45_24739830  "0/0"         "1|1"         NA           
## HiC_scaffold_46_9691567   "1|1"         NA            "1|1"        
## HiC_scaffold_46_17380257  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_46_18387147  "0/0"         NA            "0|1"        
## HiC_scaffold_46_37092355  "1|1"         "1/1"         "1|1"        
## HiC_scaffold_46_39183624  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_46_39390547  NA            "0/0"         "1/1"        
## HiC_scaffold_46_42964941  NA            "1|1"         NA           
## HiC_scaffold_46_42986653  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_46_52074364  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_46_54255667  NA            NA            "1/1"        
## HiC_scaffold_47_3750532   NA            NA            "0/0"        
## HiC_scaffold_47_3751345   "0/0"         "0|1"         "1/1"        
## HiC_scaffold_47_15400639  "1|1"         NA            "1|1"        
## HiC_scaffold_47_24072414  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_47_25273825  NA            "0/0"         "1|1"        
## HiC_scaffold_48_8752752   "0/0"         NA            "0/0"        
## HiC_scaffold_48_10765920  "1/1"         NA            "0/0"        
## HiC_scaffold_48_16077918  "0|1"         "1|1"         "0/0"        
## HiC_scaffold_48_16077940  "0|1"         "1|1"         "0/0"        
## HiC_scaffold_48_16411609  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_48_19972580  NA            "1/1"         "0/0"        
## HiC_scaffold_48_23493079  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_48_23597210  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_48_24478493  "1/1"         "0/0"         NA           
## HiC_scaffold_48_24881148  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_48_25865723  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_48_25984068  "1|1"         "0/0"         NA           
## HiC_scaffold_48_25989079  NA            "1/1"         "1|1"        
## HiC_scaffold_48_30601375  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_48_31662115  NA            "0/0"         "1/1"        
## HiC_scaffold_48_41971562  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_49_3392801   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_49_6101692   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_49_7996315   NA            "1/1"         "0/0"        
## HiC_scaffold_49_9470474   NA            "1|1"         "1/1"        
## HiC_scaffold_49_9886007   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_49_12592113  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_49_12741575  "0/0"         NA            "1/1"        
## HiC_scaffold_49_15135019  NA            "0/0"         "1/1"        
## HiC_scaffold_49_25906219  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_49_26614199  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_49_26655554  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_49_37568341  "0/1"         NA            "1/1"        
## HiC_scaffold_49_37568353  "0/1"         NA            "1/1"        
## HiC_scaffold_49_40002255  NA            NA            "1|1"        
## HiC_scaffold_49_40003229  "0/0"         NA            "0/0"        
## HiC_scaffold_49_42966376  NA            NA            "1|1"        
## HiC_scaffold_5_801252     NA            NA            "0/1"        
## HiC_scaffold_5_1446603    NA            NA            "0/0"        
## HiC_scaffold_5_1446611    NA            NA            "0/0"        
## HiC_scaffold_5_1530759    "1|1"         "0/0"         "0/1"        
## HiC_scaffold_5_1539275    "0/0"         "1/1"         "0/0"        
## HiC_scaffold_5_1789576    NA            NA            NA           
## HiC_scaffold_5_1808197    "0/1"         NA            "0/0"        
## HiC_scaffold_5_1808204    "0/1"         NA            "1/1"        
## HiC_scaffold_5_1943895    "1|1"         NA            "1|1"        
## HiC_scaffold_5_1944469    "1/1"         NA            "1/1"        
## HiC_scaffold_5_2857283    "0/0"         "0/1"         "1/1"        
## HiC_scaffold_5_4061378    "1/1"         "1/1"         "0/1"        
## HiC_scaffold_5_4340647    "0/0"         NA            "1|1"        
## HiC_scaffold_5_4435246    "0/0"         NA            "1/1"        
## HiC_scaffold_5_8868783    NA            "0/0"         "0/0"        
## HiC_scaffold_50_4315969   "0/0"         "0/1"         "0/1"        
## HiC_scaffold_50_11652296  "1/1"         "1/1"         "1|1"        
## HiC_scaffold_50_11657309  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_50_15521027  NA            "1|1"         "0/1"        
## HiC_scaffold_50_21050962  NA            NA            "0/1"        
## HiC_scaffold_50_23686202  "0|1"         "1|1"         "0/1"        
## HiC_scaffold_50_27393462  "0/0"         NA            "0|1"        
## HiC_scaffold_50_42586883  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_50_45087211  "1/1"         NA            "1/1"        
## HiC_scaffold_50_49796550  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_50_54383367  NA            "1|1"         "0/0"        
## HiC_scaffold_50_63318678  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_51_3521000   NA            NA            "0/1"        
## HiC_scaffold_51_4681905   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_51_6305599   NA            NA            "0/0"        
## HiC_scaffold_51_8530818   "0/0"         "1|1"         "1|1"        
## HiC_scaffold_51_11653312  "0/0"         NA            "0/1"        
## HiC_scaffold_51_13138547  "0/1"         "1/1"         "1|1"        
## HiC_scaffold_51_14457091  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_51_15512668  "0/0"         NA            "0/0"        
## HiC_scaffold_51_17816346  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_51_19997934  "1|1"         NA            "1|1"        
## HiC_scaffold_51_19997936  "1|1"         NA            "1|1"        
## HiC_scaffold_51_20870773  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_51_26660104  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_51_40727521  NA            "1|1"         "0/0"        
## HiC_scaffold_51_40892841  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_51_41717519  NA            NA            NA           
## HiC_scaffold_51_42547638  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_52_3335804   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_52_4149130   "0/0"         NA            "0/0"        
## HiC_scaffold_52_6893679   NA            "1|1"         "1|1"        
## HiC_scaffold_52_13155416  NA            "1/1"         "1/1"        
## HiC_scaffold_52_13155437  NA            "1|1"         "1|1"        
## HiC_scaffold_52_13155442  NA            "1|1"         "1|1"        
## HiC_scaffold_52_14885688  NA            "0/1"         "0/0"        
## HiC_scaffold_52_14895078  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_52_15141791  "0/0"         NA            "0/0"        
## HiC_scaffold_52_15743051  NA            "0/0"         "1/1"        
## HiC_scaffold_52_15760201  "0/1"         "0/1"         "0/0"        
## HiC_scaffold_52_15834589  NA            "0/0"         "1|1"        
## HiC_scaffold_52_15841769  NA            "0/0"         "0/0"        
## HiC_scaffold_52_15862421  "1|1"         "0|1"         "1|1"        
## HiC_scaffold_52_15970970  "0/0"         NA            "0|1"        
## HiC_scaffold_52_16275237  NA            "1/1"         "0/1"        
## HiC_scaffold_52_16275240  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_52_16275290  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_52_16524164  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_52_16524572  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_52_16525647  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_52_16637047  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_52_17202127  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_52_17207724  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_52_17508820  "1|1"         NA            "1|1"        
## HiC_scaffold_52_17547593  "0/1"         NA            "1/1"        
## HiC_scaffold_52_17551239  "1/1"         NA            "0/0"        
## HiC_scaffold_52_17560696  "1|1"         "1|1"         NA           
## HiC_scaffold_52_17560699  "1|1"         "1|1"         NA           
## HiC_scaffold_52_17741250  "0/0"         NA            "1/1"        
## HiC_scaffold_52_17742260  NA            "0/0"         "1|1"        
## HiC_scaffold_52_18340578  "1/1"         NA            NA           
## HiC_scaffold_52_18415911  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_52_22189517  "1|1"         "1/1"         "0/1"        
## HiC_scaffold_52_22526592  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_52_26393471  "0/0"         NA            "1/1"        
## HiC_scaffold_52_26799380  NA            "1/1"         "1/1"        
## HiC_scaffold_52_31871931  "0/0"         NA            "0/0"        
## HiC_scaffold_52_31874283  "1|1"         "1/1"         "1|1"        
## HiC_scaffold_52_31874287  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_52_32161053  NA            NA            "1|1"        
## HiC_scaffold_52_33165557  "0/0"         NA            "0/1"        
## HiC_scaffold_52_33897620  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_52_34763156  "1|1"         "0/0"         "1/1"        
## HiC_scaffold_52_34763171  "1/1"         "0|0"         "0/1"        
## HiC_scaffold_52_35174755  "0/0"         NA            "1|1"        
## HiC_scaffold_52_35608453  "0/0"         NA            "0/0"        
## HiC_scaffold_52_35608470  "0/0"         NA            "0/0"        
## HiC_scaffold_52_39464728  "0/0"         NA            "0/0"        
## HiC_scaffold_52_42141354  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_52_44675725  "1/1"         NA            "1/1"        
## HiC_scaffold_52_49935920  "0/0"         NA            "1/1"        
## HiC_scaffold_53_21789524  NA            "0/0"         "1/1"        
## HiC_scaffold_53_25168042  NA            "0/0"         "0/0"        
## HiC_scaffold_53_26398989  "0/0"         "0/0"         "0|1"        
## HiC_scaffold_53_26398992  "0/0"         "0/0"         "0|1"        
## HiC_scaffold_53_26398994  "0/0"         "0/0"         "0|1"        
## HiC_scaffold_53_26549665  "0/0"         "0/0"         NA           
## HiC_scaffold_53_29227676  "0/0"         NA            "1|1"        
## HiC_scaffold_53_31250349  "1/1"         NA            NA           
## HiC_scaffold_54_530581    "1|1"         NA            "1|1"        
## HiC_scaffold_54_794095    "0/0"         "1|1"         "1|1"        
## HiC_scaffold_54_1171109   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_54_1378956   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_54_1380539   "0/0"         NA            "1/1"        
## HiC_scaffold_54_3045015   NA            NA            "1/1"        
## HiC_scaffold_54_3185987   "0/0"         NA            "0/0"        
## HiC_scaffold_54_4401098   "0/0"         NA            "0/0"        
## HiC_scaffold_54_5595903   "1/1"         "1/1"         "0/1"        
## HiC_scaffold_54_5595921   "1/1"         "0/0"         "0/1"        
## HiC_scaffold_54_5595928   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_54_5595949   "0/1"         "1/1"         "0/0"        
## HiC_scaffold_54_6649662   NA            "0/0"         "0/1"        
## HiC_scaffold_54_8036734   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_54_9206614   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_54_35913192  "0/0"         NA            "0/1"        
## HiC_scaffold_54_35913282  "1|1"         "0/0"         NA           
## HiC_scaffold_54_35913283  "1|1"         NA            NA           
## HiC_scaffold_55_1260491   "0/1"         "1/1"         "1/1"        
## HiC_scaffold_55_3254027   "1/1"         NA            "1/1"        
## HiC_scaffold_55_3281985   "0/0"         "0/0"         NA           
## HiC_scaffold_55_5409544   NA            "1/1"         "1/1"        
## HiC_scaffold_55_5411094   NA            "1|1"         "1|1"        
## HiC_scaffold_55_5411115   NA            "1|1"         "1/1"        
## HiC_scaffold_55_18121799  NA            NA            "0/0"        
## HiC_scaffold_55_19605809  NA            "1/1"         "0/0"        
## HiC_scaffold_55_19605817  "0/0"         NA            "1|1"        
## HiC_scaffold_55_19605821  NA            NA            "1|1"        
## HiC_scaffold_55_20195204  NA            "0/0"         "0/1"        
## HiC_scaffold_55_20886967  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_55_23222937  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_55_23626331  NA            "0/0"         "0/1"        
## HiC_scaffold_55_24539590  NA            NA            "0/1"        
## HiC_scaffold_55_24585939  NA            NA            "0/0"        
## HiC_scaffold_55_34174151  "0/0"         "1/1"         NA           
## HiC_scaffold_56_17874332  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_56_18635259  "0/0"         "1|1"         "0/1"        
## HiC_scaffold_56_23654344  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_56_35850533  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_56_35850539  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_56_40813556  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_56_53211633  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_56_60070829  "0/1"         NA            "1/1"        
## HiC_scaffold_56_73286017  "1|1"         NA            "0/1"        
## HiC_scaffold_56_73829442  NA            "0/0"         "0|1"        
## HiC_scaffold_56_73829443  NA            "0/0"         "0|1"        
## HiC_scaffold_56_76060304  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_57_25306408  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_57_29222385  "1/1"         "0/0"         "0|1"        
## HiC_scaffold_57_29592432  "1/1"         NA            "0/0"        
## HiC_scaffold_57_31472698  "1/1"         "0/0"         NA           
## HiC_scaffold_57_32371742  "0/0"         NA            "0/1"        
## HiC_scaffold_57_36495072  "0/1"         "0/0"         "0/1"        
## HiC_scaffold_57_37286264  "1/1"         NA            "0/0"        
## HiC_scaffold_57_38537415  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_57_45438854  NA            "1|1"         "2|2"        
## HiC_scaffold_57_52856874  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_57_53575355  NA            "0/0"         "1/1"        
## HiC_scaffold_57_55856783  "0/1"         "0/1"         "1/1"        
## HiC_scaffold_58_1362614   "0/0"         NA            "1/1"        
## HiC_scaffold_58_1432845   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_58_1541720   "0/0"         NA            NA           
## HiC_scaffold_58_2777120   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_58_2973169   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_58_3243043   "0/0"         NA            "0/1"        
## HiC_scaffold_58_4035282   "0/0"         "0/0"         NA           
## HiC_scaffold_58_5442157   "1|1"         "0/0"         NA           
## HiC_scaffold_58_8004631   "1/1"         NA            "0/0"        
## HiC_scaffold_58_8058998   NA            NA            "0/0"        
## HiC_scaffold_58_8932837   "1/1"         NA            "0/0"        
## HiC_scaffold_58_14814944  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_58_15639988  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_58_15707198  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_58_15707258  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_58_15710623  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_58_19155063  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_58_20224050  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_58_38475355  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_59_3979055   NA            "1/1"         "1/1"        
## HiC_scaffold_59_5071810   "1|1"         "1|1"         "0/0"        
## HiC_scaffold_59_5349936   "0/0"         "0/0"         "0/1"        
## HiC_scaffold_59_5350114   "0/0"         "0/0"         "0/1"        
## HiC_scaffold_59_7738302   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_59_7738351   "1/1"         NA            "0/0"        
## HiC_scaffold_59_7958561   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_59_9273798   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_59_50928099  "0/0"         NA            "0/0"        
## HiC_scaffold_59_52960060  NA            NA            "0/0"        
## HiC_scaffold_6_10569023   "0/0"         "1/1"         "0/1"        
## HiC_scaffold_6_10711445   "0/1"         NA            "1/1"        
## HiC_scaffold_6_13209200   NA            NA            "0/1"        
## HiC_scaffold_6_13213107   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_6_13311684   "0/0"         NA            "0/0"        
## HiC_scaffold_6_15670783   "0/0"         "0|1"         "1|1"        
## HiC_scaffold_6_19111232   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_6_32805498   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_6_38793174   "0/0"         "0/0"         "0/1"        
## HiC_scaffold_6_41092101   NA            "0/0"         "0/0"        
## HiC_scaffold_6_41342933   NA            "0/0"         "0/1"        
## HiC_scaffold_6_47594508   NA            NA            "0/0"        
## HiC_scaffold_60_70878     NA            "1|1"         NA           
## HiC_scaffold_60_99549     "0/0"         "0|1"         "0/1"        
## HiC_scaffold_60_201823    NA            "1/1"         "0/1"        
## HiC_scaffold_60_712969    NA            "1|1"         "0/0"        
## HiC_scaffold_60_744783    "0/0"         "0|1"         "0/1"        
## HiC_scaffold_60_744788    "0/0"         "0|0"         "0|1"        
## HiC_scaffold_60_22142128  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_60_27599770  "0/1"         "0|1"         "1/1"        
## HiC_scaffold_60_30608878  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_60_32657324  NA            "0/0"         "0/0"        
## HiC_scaffold_60_32672580  NA            "0/0"         "1/1"        
## HiC_scaffold_60_38856893  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_60_39028335  NA            NA            "1/1"        
## HiC_scaffold_60_40296869  NA            "1/1"         "0/0"        
## HiC_scaffold_60_42775723  NA            "0/1"         "1/1"        
## HiC_scaffold_60_44687906  "0/0"         NA            "1/1"        
## HiC_scaffold_60_44804601  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_60_53696867  "0/0"         NA            NA           
## HiC_scaffold_60_53696868  "0/0"         NA            NA           
## HiC_scaffold_60_60651515  "0/0"         "1/1"         "1|1"        
## HiC_scaffold_60_70678462  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_61_2205328   NA            "1|1"         "0/0"        
## HiC_scaffold_61_2491706   "1/1"         "1/1"         "0/0"        
## HiC_scaffold_61_4009916   "0/0"         "0/0"         "2/2"        
## HiC_scaffold_61_4062917   "0/0"         "0/0"         "2/2"        
## HiC_scaffold_61_4122763   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_61_4216461   "1/1"         "0/0"         "1/1"        
## HiC_scaffold_61_4325053   NA            "0/0"         "0/0"        
## HiC_scaffold_61_9004838   NA            NA            "1|1"        
## HiC_scaffold_61_14635083  "0|1"         "0/0"         "0/0"        
## HiC_scaffold_62_1128608   "1/1"         NA            "1/1"        
## HiC_scaffold_62_11335200  "1|2"         "0/0"         "0|1"        
## HiC_scaffold_62_18828476  NA            "1/1"         "1/1"        
## HiC_scaffold_62_21548870  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_62_23103274  NA            "0/0"         "0/0"        
## HiC_scaffold_62_25793456  "0/1"         NA            "1/1"        
## HiC_scaffold_62_25887474  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_62_28516096  "1|1"         NA            "0/0"        
## HiC_scaffold_62_28516099  "1|1"         NA            "0/0"        
## HiC_scaffold_62_28818725  "0|1"         "1|1"         "1|1"        
## HiC_scaffold_62_28818729  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_62_45207353  "0/1"         "0/1"         "0/1"        
## HiC_scaffold_63_3092269   "1/1"         "0/1"         "1/1"        
## HiC_scaffold_63_3977940   "0/1"         NA            "0/1"        
## HiC_scaffold_63_4084937   NA            "0/0"         "0/0"        
## HiC_scaffold_63_4196326   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_63_6262453   "0/1"         "0/1"         NA           
## HiC_scaffold_63_6350204   "1/1"         NA            "1/1"        
## HiC_scaffold_63_6458794   "1|1"         NA            "0/1"        
## HiC_scaffold_64_9162978   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_64_16876561  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_64_17543009  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_64_18925356  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_64_19133050  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_64_19627769  NA            "0/0"         NA           
## HiC_scaffold_64_20477250  "0/0"         NA            "1/1"        
## HiC_scaffold_64_22816677  NA            "0/0"         "0/1"        
## HiC_scaffold_64_22954654  "1|1"         NA            "0/0"        
## HiC_scaffold_64_22954658  "1|1"         NA            "0/0"        
## HiC_scaffold_64_22954682  "1/1"         NA            "0/0"        
## HiC_scaffold_65_6829971   NA            "0/0"         "0/0"        
## HiC_scaffold_65_8071102   NA            "1/1"         "0/0"        
## HiC_scaffold_65_9023979   "0/0"         NA            "0/1"        
## HiC_scaffold_65_9839671   "0/0"         NA            "0/1"        
## HiC_scaffold_65_10404778  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_65_11327791  "1/1"         NA            "1/1"        
## HiC_scaffold_65_11332104  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_65_34823822  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_65_51418017  "1|1"         NA            "1/1"        
## HiC_scaffold_65_54053979  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_65_57110875  "0|1"         "0/0"         "1|1"        
## HiC_scaffold_66_15615363  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_66_15672090  NA            NA            "0/1"        
## HiC_scaffold_66_17903445  NA            "0/0"         "0/1"        
## HiC_scaffold_66_18298629  "0/0"         NA            "1|1"        
## HiC_scaffold_66_19730676  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_66_23688768  NA            "1/1"         "1/1"        
## HiC_scaffold_66_26614535  "1/1"         "0/0"         "0|2"        
## HiC_scaffold_66_27445665  "0/0"         NA            "1/1"        
## HiC_scaffold_66_29457165  "0/1"         "0/0"         NA           
## HiC_scaffold_66_29457180  "0/1"         NA            NA           
## HiC_scaffold_66_30116287  "1|1"         "0|1"         "1/1"        
## HiC_scaffold_66_31603503  NA            "0/0"         "0/0"        
## HiC_scaffold_66_33261460  NA            "0/0"         "0/0"        
## HiC_scaffold_66_34138981  "1/1"         "0/0"         NA           
## HiC_scaffold_66_34139020  "0/0"         NA            "0/1"        
## HiC_scaffold_66_34142862  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_67_1404390   "1/1"         "1/1"         "0/1"        
## HiC_scaffold_67_28493665  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_67_30243885  "1|1"         "0/0"         NA           
## HiC_scaffold_67_31511806  "0/0"         NA            "1|1"        
## HiC_scaffold_67_34638092  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_67_37534720  "0/0"         NA            "0/0"        
## HiC_scaffold_67_39679546  NA            NA            "0/0"        
## HiC_scaffold_67_39854918  NA            "1|1"         "1|1"        
## HiC_scaffold_67_39860738  "0/0"         NA            "1/1"        
## HiC_scaffold_67_40331656  "0/0"         NA            "1/1"        
## HiC_scaffold_67_40824747  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_68_3438132   NA            NA            NA           
## HiC_scaffold_68_3438133   NA            NA            NA           
## HiC_scaffold_68_11206902  NA            "0/1"         "0/1"        
## HiC_scaffold_68_32770607  NA            NA            "1|1"        
## HiC_scaffold_68_34016823  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_68_34020019  "0/1"         "0/1"         "1/1"        
## HiC_scaffold_68_40296057  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_68_40296059  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_68_65001879  NA            "1/1"         "1/1"        
## HiC_scaffold_69_23311147  NA            "0/0"         "0/0"        
## HiC_scaffold_69_27351303  NA            "1/1"         NA           
## HiC_scaffold_69_29437208  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_69_33699381  "1|1"         NA            "1|1"        
## HiC_scaffold_69_40194698  "1/1"         "1/1"         "1|1"        
## HiC_scaffold_69_48273575  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_69_48348026  "0/1"         "1|1"         "0/1"        
## HiC_scaffold_69_48348034  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_69_49563252  "1/1"         NA            "1/1"        
## HiC_scaffold_69_49593952  "1/1"         "0/1"         "0/0"        
## HiC_scaffold_69_49859037  "0/0"         "0/0"         "0|1"        
## HiC_scaffold_69_51271238  NA            "0/1"         NA           
## HiC_scaffold_69_51529836  NA            "0/0"         "1/1"        
## HiC_scaffold_69_57313650  NA            "1/1"         "1/1"        
## HiC_scaffold_69_57359194  NA            "1/1"         "0/0"        
## HiC_scaffold_6951_523650  "1/1"         NA            "0/0"        
## HiC_scaffold_6951_897126  "0/0"         NA            "0/0"        
## HiC_scaffold_6951_1134482 NA            "1|1"         "0/1"        
## HiC_scaffold_6951_2484960 "0/0"         "0/0"         "1/1"        
## HiC_scaffold_6951_3301273 "0/0"         "1|1"         "0/0"        
## HiC_scaffold_6951_3314609 "1/1"         NA            "0/1"        
## HiC_scaffold_6951_3945993 "0/0"         "0/0"         "0/0"        
## HiC_scaffold_6958_218293  "0/0"         "0/0"         "0|1"        
## HiC_scaffold_6958_449143  "0/0"         "1/1"         NA           
## HiC_scaffold_7_351023     "0/0"         "1/1"         "0/0"        
## HiC_scaffold_7_488024     "0/0"         "0/0"         "0/0"        
## HiC_scaffold_7_492663     NA            "1/1"         "0/1"        
## HiC_scaffold_7_693567     NA            "0/0"         "0/0"        
## HiC_scaffold_7_2379128    "0/1"         "1/1"         "1/1"        
## HiC_scaffold_7_3087721    "0/1"         NA            "1/1"        
## HiC_scaffold_7_3394880    "0/0"         "0/1"         "1/1"        
## HiC_scaffold_7_22247106   "0/0"         NA            "0/1"        
## HiC_scaffold_70_4632611   "0/1"         "0/0"         "1|1"        
## HiC_scaffold_70_14042778  "0/0"         NA            "0/0"        
## HiC_scaffold_71_410844    "0/0"         "1|1"         "0/0"        
## HiC_scaffold_71_1753451   NA            "0/0"         NA           
## HiC_scaffold_71_2283682   "1|1"         "1|1"         "0/1"        
## HiC_scaffold_71_3439685   "0/0"         "0|0"         "0/0"        
## HiC_scaffold_71_17850462  NA            NA            "0/0"        
## HiC_scaffold_71_20588314  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_71_25465351  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_71_25465352  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_71_26356062  "1/1"         NA            "0/1"        
## HiC_scaffold_72_11785096  "0/0"         "0/0"         NA           
## HiC_scaffold_72_17285854  "1/1"         NA            NA           
## HiC_scaffold_72_23704999  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_72_24465318  "1|1"         "0/0"         "0/1"        
## HiC_scaffold_72_30457277  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_72_32068649  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_72_35058295  NA            NA            "1/1"        
## HiC_scaffold_72_36024997  NA            "1|1"         "1|1"        
## HiC_scaffold_72_37135067  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_72_38410141  "1/1"         NA            "1/1"        
## HiC_scaffold_72_38448056  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_72_41412511  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_73_2192629   "1|1"         "0/0"         "1|1"        
## HiC_scaffold_73_2920208   "0/0"         NA            "1|1"        
## HiC_scaffold_73_4522493   "1/1"         "1|1"         "1/1"        
## HiC_scaffold_73_4748625   "0/1"         NA            "0/1"        
## HiC_scaffold_73_5839336   "1/1"         "0/0"         NA           
## HiC_scaffold_73_9338582   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_73_27393859  "1|1"         "0|1"         "0/1"        
## HiC_scaffold_74_14235619  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_74_14515598  "1/1"         NA            "1/1"        
## HiC_scaffold_74_15116121  "1|1"         "0/0"         NA           
## HiC_scaffold_74_17233613  NA            "0/0"         NA           
## HiC_scaffold_74_17725340  "1|1"         "0/0"         "0|1"        
## HiC_scaffold_74_18418135  "0/0"         "1|1"         NA           
## HiC_scaffold_74_18418138  "0/0"         "1|1"         NA           
## HiC_scaffold_74_21254425  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_74_22261065  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_74_47132519  NA            "1|1"         "0/0"        
## HiC_scaffold_74_50979096  "0/0"         NA            "0/1"        
## HiC_scaffold_74_51060549  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_74_53256803  "0/0"         "0/1"         NA           
## HiC_scaffold_74_55464169  NA            "0/0"         "0/1"        
## HiC_scaffold_74_55515512  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_74_55999260  NA            NA            "1|1"        
## HiC_scaffold_74_57404902  NA            NA            NA           
## HiC_scaffold_74_58181927  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_74_58198600  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_74_63060195  "0/1"         NA            NA           
## HiC_scaffold_75_5345466   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_75_5346522   NA            "0/1"         "1/1"        
## HiC_scaffold_75_5346535   NA            "0/1"         "1/1"        
## HiC_scaffold_75_9850973   "0/0"         NA            "0/0"        
## HiC_scaffold_76_27149820  "1/1"         "0/0"         NA           
## HiC_scaffold_76_31582908  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_76_31792815  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_76_35352820  NA            "1/1"         "0/0"        
## HiC_scaffold_76_57782171  "0/0"         NA            "0/0"        
## HiC_scaffold_76_59862401  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_76_61095594  NA            "0/0"         "0/0"        
## HiC_scaffold_76_65496128  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_76_68965847  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_76_68966411  "0/1"         "1/1"         "0/1"        
## HiC_scaffold_76_69823482  "0/0"         "1/1"         "1|1"        
## HiC_scaffold_76_73343841  "1/1"         NA            "0/1"        
## HiC_scaffold_77_3598274   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_77_6982137   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_77_11021994  "1/1"         NA            "0/1"        
## HiC_scaffold_77_13608165  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_77_16888594  "0/0"         NA            "0|1"        
## HiC_scaffold_77_16888623  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_77_16889448  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_77_39784685  NA            NA            "0/1"        
## HiC_scaffold_77_44375866  "0/0"         "1/1"         NA           
## HiC_scaffold_77_45385370  "0/0"         NA            "0/0"        
## HiC_scaffold_78_5719919   NA            "0/0"         "1/1"        
## HiC_scaffold_78_11353297  "0/0"         "1|1"         "0|1"        
## HiC_scaffold_78_27316392  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_78_48124809  "0/0"         NA            NA           
## HiC_scaffold_78_48124826  NA            NA            NA           
## HiC_scaffold_78_48126176  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_78_48279096  NA            "0/0"         NA           
## HiC_scaffold_78_48434558  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_78_49759181  NA            NA            "0/0"        
## HiC_scaffold_78_49759192  "0/0"         NA            "0/0"        
## HiC_scaffold_78_49759215  "0/0"         NA            "0/1"        
## HiC_scaffold_78_51364025  "1/1"         NA            "1/1"        
## HiC_scaffold_78_55395445  NA            "0/0"         "0/0"        
## HiC_scaffold_78_59610866  NA            "1/1"         NA           
## HiC_scaffold_78_62136661  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_79_1643780   "0|1"         "0/0"         "1/1"        
## HiC_scaffold_79_2519178   "1/1"         NA            "1/1"        
## HiC_scaffold_79_2858100   "1/1"         NA            "0/0"        
## HiC_scaffold_79_3922454   "1/1"         "0/0"         "1/1"        
## HiC_scaffold_79_4127878   "1/1"         "1|1"         "1|1"        
## HiC_scaffold_79_4543693   "1/1"         "1/1"         NA           
## HiC_scaffold_79_11507678  "1/1"         NA            "1/1"        
## HiC_scaffold_79_12618812  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_79_14185404  "1|1"         NA            NA           
## HiC_scaffold_79_17120237  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_79_17120254  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_79_35551507  "1|1"         "0/0"         "0/1"        
## HiC_scaffold_79_35551543  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_79_38927423  "1|1"         NA            "0/0"        
## HiC_scaffold_79_42623307  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_79_43179786  "0/0"         NA            "0/0"        
## HiC_scaffold_79_43180099  NA            NA            "0/0"        
## HiC_scaffold_79_43828078  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_79_43872513  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_79_44627215  "0/0"         NA            "1/1"        
## HiC_scaffold_79_50772769  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_79_55468575  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_79_55816114  NA            NA            "0/0"        
## HiC_scaffold_79_59915784  NA            NA            "0/0"        
## HiC_scaffold_79_60165298  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_79_60165305  "0/0"         NA            "0/0"        
## HiC_scaffold_79_69145556  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_79_70208305  NA            NA            "0|1"        
## HiC_scaffold_79_73412292  "0/0"         NA            "0/0"        
## HiC_scaffold_79_73416663  NA            NA            "0|1"        
## HiC_scaffold_79_73416688  NA            "1/1"         "0/0"        
## HiC_scaffold_79_76863102  "0/0"         NA            "0/0"        
## HiC_scaffold_79_81279649  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_79_81499990  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_79_82319836  "1|1"         NA            NA           
## HiC_scaffold_79_82319849  "1|1"         NA            NA           
## HiC_scaffold_79_83163707  NA            NA            "1/1"        
## HiC_scaffold_79_86283512  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_79_87123758  NA            NA            "1|1"        
## HiC_scaffold_79_88362889  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_79_88599431  "0/0"         NA            "0/0"        
## HiC_scaffold_79_89322919  "0/0"         NA            "1/1"        
## HiC_scaffold_79_89331918  "0/0"         "0/0"         NA           
## HiC_scaffold_79_91340958  "0/0"         "0|1"         NA           
## HiC_scaffold_8_13649836   "1/1"         NA            "1/1"        
## HiC_scaffold_8_13650752   "1|1"         "1|1"         "0|1"        
## HiC_scaffold_8_23818233   NA            "1/1"         NA           
## HiC_scaffold_8_24123972   "1|1"         "0/0"         "1|1"        
## HiC_scaffold_8_24230791   NA            "0/0"         "0/1"        
## HiC_scaffold_8_24588423   "0/0"         "0/0"         "0|2"        
## HiC_scaffold_8_25348483   "1/1"         "0/0"         "1/1"        
## HiC_scaffold_8_25421933   NA            "0/0"         "0/0"        
## HiC_scaffold_8_25772942   NA            NA            "0/0"        
## HiC_scaffold_8_26289589   NA            NA            "1|1"        
## HiC_scaffold_8_27602740   NA            NA            "1|1"        
## HiC_scaffold_8_28159063   "1/1"         NA            "1/1"        
## HiC_scaffold_8_30829320   "0/0"         NA            NA           
## HiC_scaffold_8_31044084   NA            NA            "0/0"        
## HiC_scaffold_8_31415507   NA            NA            NA           
## HiC_scaffold_8_32594682   "1|1"         NA            "0/0"        
## HiC_scaffold_80_3617847   NA            NA            "1|1"        
## HiC_scaffold_80_5758183   "0/0"         "1|1"         "1|1"        
## HiC_scaffold_80_6760006   "1|1"         NA            "0|1"        
## HiC_scaffold_80_6760037   NA            NA            "0/0"        
## HiC_scaffold_80_7772622   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_80_7919533   "1/1"         "1/1"         "2|2"        
## HiC_scaffold_80_8110052   "0/0"         "1|1"         "0/1"        
## HiC_scaffold_80_8193366   "0/0"         "1/1"         "1/1"        
## HiC_scaffold_80_8625784   "1/1"         "1/1"         NA           
## HiC_scaffold_80_8912846   "0/1"         "0/0"         "0/1"        
## HiC_scaffold_80_9544102   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_80_10770701  "0/1"         "0/0"         "0/1"        
## HiC_scaffold_80_11590146  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_80_16953653  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_80_18938832  NA            "0/0"         NA           
## HiC_scaffold_80_19015946  NA            "1/1"         "0/0"        
## HiC_scaffold_80_19404001  NA            NA            "1/1"        
## HiC_scaffold_80_25346708  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_80_37479851  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_80_37507516  "1/1"         "0/0"         NA           
## HiC_scaffold_81_1187192   "0/0"         NA            "0/0"        
## HiC_scaffold_81_2689826   NA            "1|1"         NA           
## HiC_scaffold_81_2690751   NA            "1|1"         NA           
## HiC_scaffold_81_6614123   "0/0"         NA            "0/0"        
## HiC_scaffold_81_7836855   "1/1"         NA            "0/1"        
## HiC_scaffold_81_10334868  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_81_10458752  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_81_17515538  "1/1"         NA            "0/1"        
## HiC_scaffold_81_40271282  NA            NA            "0/0"        
## HiC_scaffold_81_40271294  "0/0"         NA            "1/1"        
## HiC_scaffold_81_41096427  NA            "0/0"         "0/0"        
## HiC_scaffold_81_41096444  NA            "0/0"         "0/0"        
## HiC_scaffold_81_43820595  "1/1"         NA            "0/0"        
## HiC_scaffold_81_43820732  NA            "1|1"         "0/0"        
## HiC_scaffold_81_43854278  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_81_44804862  "0/0"         NA            NA           
## HiC_scaffold_81_45063428  NA            "0/0"         "0/1"        
## HiC_scaffold_81_45950590  "0/0"         NA            "0/1"        
## HiC_scaffold_81_46714752  NA            NA            "1|1"        
## HiC_scaffold_81_46714759  NA            NA            "1|1"        
## HiC_scaffold_81_47170397  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_81_47628201  NA            NA            "1|1"        
## HiC_scaffold_81_48105216  "0/0"         NA            "1|1"        
## HiC_scaffold_81_48932070  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_81_54050146  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_82_5672063   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_82_8796823   "1|1"         NA            "0/0"        
## HiC_scaffold_82_13450959  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_82_26144442  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_82_26147011  NA            NA            "1|1"        
## HiC_scaffold_82_28907834  NA            NA            "1|1"        
## HiC_scaffold_82_34413793  NA            "0|1"         NA           
## HiC_scaffold_82_34413800  NA            "0/0"         NA           
## HiC_scaffold_82_36173035  NA            "0/0"         "1/1"        
## HiC_scaffold_82_40539273  NA            "1/1"         "0/0"        
## HiC_scaffold_82_41470256  NA            "1/1"         "1/1"        
## HiC_scaffold_83_23993605  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_83_35035961  "1/1"         NA            "0/0"        
## HiC_scaffold_83_43423618  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_83_46920654  "1/1"         NA            "0/1"        
## HiC_scaffold_83_46934197  NA            NA            "0|1"        
## HiC_scaffold_84_356301    "0/0"         "1|1"         NA           
## HiC_scaffold_84_5761817   "0/0"         NA            "0/1"        
## HiC_scaffold_84_5769022   "1|1"         "1|1"         "0/0"        
## HiC_scaffold_84_6288130   "0/0"         "0|1"         "1/1"        
## HiC_scaffold_84_6288141   "1/1"         "1/1"         "1|1"        
## HiC_scaffold_84_6288147   "0/0"         "0/1"         "1|1"        
## HiC_scaffold_84_7069238   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_84_9131309   NA            "1/1"         "1/1"        
## HiC_scaffold_84_10148442  NA            NA            "1/1"        
## HiC_scaffold_84_14659391  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_84_16302752  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_84_18463244  "1/1"         NA            "1/1"        
## HiC_scaffold_84_22909575  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_84_29275266  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_84_31184610  "0|1"         NA            "1/1"        
## HiC_scaffold_84_33093169  NA            "0/0"         "0/1"        
## HiC_scaffold_84_37675180  NA            NA            "1/1"        
## HiC_scaffold_84_39501814  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_84_50169438  "1|1"         NA            "0/0"        
## HiC_scaffold_84_50169445  "1|1"         NA            "0/0"        
## HiC_scaffold_84_51231025  "0/0"         "0/0"         NA           
## HiC_scaffold_85_9792207   "1|1"         "0/0"         "0/1"        
## HiC_scaffold_85_11784233  "0/0"         "0/0"         "0|1"        
## HiC_scaffold_85_11911022  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_85_11911142  NA            "0/0"         "1/1"        
## HiC_scaffold_85_11913828  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_85_11913831  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_85_12353081  "1/1"         NA            "1/1"        
## HiC_scaffold_85_12414551  "2/2"         "1/1"         "0/0"        
## HiC_scaffold_85_13043967  NA            "1|1"         "1/1"        
## HiC_scaffold_85_13221888  NA            NA            "1/1"        
## HiC_scaffold_85_27008863  NA            NA            NA           
## HiC_scaffold_85_28992264  NA            "0/0"         "0|1"        
## HiC_scaffold_85_28992268  NA            NA            "0/1"        
## HiC_scaffold_85_64310850  NA            NA            "0/0"        
## HiC_scaffold_85_65135112  "0/0"         NA            "0/0"        
## HiC_scaffold_85_65563529  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_86_1949664   NA            NA            "1|1"        
## HiC_scaffold_86_5340423   "1/1"         "0/0"         "1/1"        
## HiC_scaffold_86_5483991   NA            NA            "0/0"        
## HiC_scaffold_86_8928469   "0/0"         NA            "1|1"        
## HiC_scaffold_86_23727924  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_86_24825818  NA            "1|1"         "0|1"        
## HiC_scaffold_86_25333718  NA            "1/1"         "1/1"        
## HiC_scaffold_86_29668168  "0/0"         "1|1"         "0/2"        
## HiC_scaffold_86_30914243  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_86_32040320  NA            NA            "0/0"        
## HiC_scaffold_86_32040329  NA            NA            "0/0"        
## HiC_scaffold_86_32125061  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_86_32144758  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_86_32153692  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_86_32534129  NA            "1/1"         "1/1"        
## HiC_scaffold_86_32605768  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_86_36355399  "0/0"         "0/0"         NA           
## HiC_scaffold_86_36357265  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_87_1253643   "0/0"         "0/1"         "1/1"        
## HiC_scaffold_87_2137958   "0/0"         "0/1"         "1/1"        
## HiC_scaffold_87_3980100   NA            NA            "1/1"        
## HiC_scaffold_87_4395923   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_87_5489328   "1|1"         NA            "1|1"        
## HiC_scaffold_87_6300441   "0|1"         "0|1"         NA           
## HiC_scaffold_87_16306904  "1/1"         NA            "1/1"        
## HiC_scaffold_87_44780945  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_88_5584327   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_88_7104630   "0/0"         "0/0"         NA           
## HiC_scaffold_88_7104631   "0/1"         "0/0"         NA           
## HiC_scaffold_88_7104638   "1|1"         "1|1"         NA           
## HiC_scaffold_88_7104639   "1|1"         "0/0"         NA           
## HiC_scaffold_88_7104640   "1|1"         "0/0"         NA           
## HiC_scaffold_88_7479340   "0/0"         NA            "0/1"        
## HiC_scaffold_88_8773607   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_88_9883678   "1|1"         NA            "1|1"        
## HiC_scaffold_88_10878718  NA            NA            "0/0"        
## HiC_scaffold_88_19365116  "0/0"         NA            "0|1"        
## HiC_scaffold_88_20477349  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_88_20557885  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_89_675045    "0/0"         NA            "0/0"        
## HiC_scaffold_89_2815845   "0/0"         "0/0"         "2|2"        
## HiC_scaffold_89_2843940   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_89_3018830   NA            NA            NA           
## HiC_scaffold_89_13745506  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_89_30006907  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_89_36509388  NA            "0/0"         "1|1"        
## HiC_scaffold_89_38703735  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_89_38764895  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_89_42052609  NA            "0/0"         "0/0"        
## HiC_scaffold_89_42054991  NA            "0/0"         NA           
## HiC_scaffold_89_44306958  NA            NA            "0/0"        
## HiC_scaffold_89_44338206  "0/0"         NA            "0/0"        
## HiC_scaffold_89_45298973  NA            "0/1"         "0/0"        
## HiC_scaffold_9_3529921    NA            "1/1"         "0/0"        
## HiC_scaffold_9_5660454    "0/0"         NA            "0|1"        
## HiC_scaffold_9_5660461    "1|1"         NA            "1|1"        
## HiC_scaffold_9_5854070    "1/1"         NA            "0/1"        
## HiC_scaffold_9_6142415    "1|1"         NA            "0/0"        
## HiC_scaffold_9_6142436    "1|1"         NA            "0/0"        
## HiC_scaffold_9_6143781    "1/1"         "1/1"         NA           
## HiC_scaffold_9_6654825    "1/1"         "0/0"         "1/1"        
## HiC_scaffold_9_7094545    "1|1"         "0/0"         "0|1"        
## HiC_scaffold_9_7100208    "0|1"         "0/0"         "0|1"        
## HiC_scaffold_9_7109988    "0/0"         "0/0"         "0/0"        
## HiC_scaffold_9_7111922    "1|1"         NA            "0/0"        
## HiC_scaffold_9_8235781    "0/0"         "1/1"         "0/0"        
## HiC_scaffold_9_8279558    "0/0"         NA            "1/1"        
## HiC_scaffold_9_15679481   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_9_18082611   "0/0"         NA            "0/0"        
## HiC_scaffold_9_18090830   "0/0"         NA            "0/0"        
## HiC_scaffold_9_30240531   "1/1"         NA            NA           
## HiC_scaffold_90_10418696  "0/0"         NA            "0/0"        
## HiC_scaffold_90_11470224  "1/1"         NA            "0/0"        
## HiC_scaffold_90_13593319  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_90_16260161  "0/0"         NA            "0/0"        
## HiC_scaffold_90_22325499  NA            NA            "0/0"        
## HiC_scaffold_90_23574204  "0/0"         NA            "0/0"        
## HiC_scaffold_90_23609908  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_90_23623078  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_90_23626883  NA            NA            "0/0"        
## HiC_scaffold_90_23812663  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_90_25939283  NA            "0/0"         "0/1"        
## HiC_scaffold_90_25985714  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_90_30751272  NA            NA            "0/0"        
## HiC_scaffold_90_31232025  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_90_31245699  "1/1"         NA            "1/1"        
## HiC_scaffold_90_31527975  NA            "0/0"         "0/0"        
## HiC_scaffold_90_31546172  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_90_38511996  "0/0"         NA            "1|1"        
## HiC_scaffold_90_38511999  "1|1"         NA            "1|1"        
## HiC_scaffold_90_38517279  "1/1"         "1/1"         NA           
## HiC_scaffold_90_40624104  "0/0"         NA            "0/0"        
## HiC_scaffold_91_5644765   "1|1"         "1|1"         NA           
## HiC_scaffold_91_5867214   NA            "1|1"         "0/0"        
## HiC_scaffold_91_5867226   NA            "1|1"         "0/0"        
## HiC_scaffold_91_7704263   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_91_7871360   "1/1"         NA            "0/0"        
## HiC_scaffold_91_8538014   NA            "1/1"         "1/1"        
## HiC_scaffold_91_13230485  NA            NA            "1|1"        
## HiC_scaffold_91_28696118  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_91_28696625  NA            "1|1"         NA           
## HiC_scaffold_91_42177482  "0|1"         NA            "0/0"        
## HiC_scaffold_91_46813640  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_92_23783035  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_92_23783036  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_92_24712793  "0/1"         NA            "0/0"        
## HiC_scaffold_92_28698258  "1|1"         "1/1"         "0|1"        
## HiC_scaffold_92_40691582  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_92_43967712  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_92_47147572  NA            NA            "0|1"        
## HiC_scaffold_92_49042714  "0/0"         "0/0"         NA           
## HiC_scaffold_92_49042715  "0/0"         "0/0"         NA           
## HiC_scaffold_92_53634002  "1/1"         NA            "0/0"        
## HiC_scaffold_92_58211868  "0/0"         NA            "0/1"        
## HiC_scaffold_92_60114155  NA            "0/0"         "0/0"        
## HiC_scaffold_92_63603483  "0/1"         "1|1"         "0/0"        
## HiC_scaffold_92_64797225  "0/0"         "0/0"         "2|2"        
## HiC_scaffold_92_68367476  NA            "0|1"         "0/0"        
## HiC_scaffold_93_1912167   "0/0"         NA            "0/1"        
## HiC_scaffold_93_2485978   NA            "1/1"         NA           
## HiC_scaffold_93_3227638   NA            "1/1"         "1/1"        
## HiC_scaffold_93_3227641   NA            "0/0"         "0/0"        
## HiC_scaffold_93_13971208  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_93_13987080  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_93_21125468  NA            "1/1"         "1/1"        
## HiC_scaffold_93_21845293  "1/1"         "1/1"         NA           
## HiC_scaffold_93_21845310  "0/0"         "0/0"         NA           
## HiC_scaffold_93_21846342  NA            "0/0"         "0/0"        
## HiC_scaffold_93_21846356  NA            "0/0"         "0/1"        
## HiC_scaffold_93_22589723  "0/0"         "0/0"         NA           
## HiC_scaffold_93_22619278  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_93_22631258  NA            "1|1"         "1|1"        
## HiC_scaffold_93_22631266  NA            "1|1"         "1|1"        
## HiC_scaffold_94_3110102   "0/0"         "1/1"         "1/1"        
## HiC_scaffold_94_3205919   NA            "0/0"         NA           
## HiC_scaffold_94_9023846   NA            NA            "0/1"        
## HiC_scaffold_94_11572820  NA            NA            "1/1"        
## HiC_scaffold_94_12368532  "1|1"         "0/0"         "0/1"        
## HiC_scaffold_94_42179418  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_94_42179519  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_94_51646206  "2/2"         "0/0"         "0/1"        
## HiC_scaffold_94_52781289  "0/0"         NA            "0|1"        
## HiC_scaffold_94_53790035  "0/1"         NA            "1/1"        
## HiC_scaffold_94_53792738  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_94_56768905  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_946_81276    "1/1"         "1/1"         "0/1"        
## HiC_scaffold_95_3189690   "0/1"         "1/1"         "0/0"        
## HiC_scaffold_95_4397298   "1|1"         NA            "0|1"        
## HiC_scaffold_95_9469157   NA            NA            "0/0"        
## HiC_scaffold_95_10641411  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_95_10949821  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_95_12993394  "0/0"         "0/0"         "0|1"        
## HiC_scaffold_95_15515793  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_95_15608785  NA            "0/0"         NA           
## HiC_scaffold_95_15609137  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_95_16295316  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_95_22656165  "0/0"         NA            "1|1"        
## HiC_scaffold_95_25885727  NA            NA            "0/1"        
## HiC_scaffold_96_10460019  NA            "0/0"         "1/1"        
## HiC_scaffold_96_27155785  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_96_37939434  "0/0"         NA            "0/1"        
## HiC_scaffold_96_51115048  "1/1"         NA            "1/1"        
## HiC_scaffold_96_51116511  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_96_51915040  "0/0"         NA            "0|1"        
## HiC_scaffold_96_52681287  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_96_53276519  "0/1"         "0/1"         "1/1"        
## HiC_scaffold_97_1736926   "0|1"         NA            "0/0"        
## HiC_scaffold_97_1736994   "1|1"         NA            "0/0"        
## HiC_scaffold_97_3863543   "1/1"         NA            "1/1"        
## HiC_scaffold_97_4200445   "0/0"         NA            "0/1"        
## HiC_scaffold_97_4799162   NA            NA            "0/0"        
## HiC_scaffold_97_5027892   "1/1"         NA            "1/1"        
## HiC_scaffold_97_8007933   "1|1"         NA            "0/0"        
## HiC_scaffold_97_17997210  NA            NA            "0/0"        
## HiC_scaffold_97_18604647  NA            "1/1"         "1/1"        
## HiC_scaffold_97_20239636  "0/0"         NA            "0|1"        
## HiC_scaffold_98_15154096  NA            NA            "0/0"        
## HiC_scaffold_98_22342667  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_98_22634293  "1|1"         "1|1"         "0|1"        
## HiC_scaffold_98_22634294  "1|1"         "1|1"         "0|1"        
## HiC_scaffold_98_22721138  "0/0"         NA            "1|1"        
## HiC_scaffold_98_22869378  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_98_24108405  NA            "0|1"         "0/0"        
## HiC_scaffold_98_27359592  NA            "1/1"         "1/1"        
## HiC_scaffold_98_28549834  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_98_28867520  "1|1"         NA            "1|1"        
## HiC_scaffold_98_28867524  "1|1"         NA            "2|2"        
## HiC_scaffold_98_29431717  NA            "1|1"         NA           
## HiC_scaffold_98_29675109  "0/0"         "1/1"         NA           
## HiC_scaffold_99_1163244   "0/0"         "1|1"         "0/0"        
## HiC_scaffold_99_1451611   "0/0"         NA            "1/1"        
## HiC_scaffold_99_2021961   NA            NA            "0/0"        
## HiC_scaffold_99_5134392   "0/0"         NA            "1/1"        
## HiC_scaffold_99_5239109   NA            NA            "1/1"        
## HiC_scaffold_99_6917738   NA            "1|1"         "1|1"        
## HiC_scaffold_99_11221970  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_99_25982503  NA            NA            "0/1"        
##                           Tank_4_Crab_1 Tank_4_Crab_2 Tank_4_Crab_3
## HiC_scaffold_1_2523394    "0/1"         "0/0"         NA           
## HiC_scaffold_1_2542157    "0/1"         "1/1"         "0/0"        
## HiC_scaffold_1_2647806    "1/1"         "1/1"         "1/1"        
## HiC_scaffold_1_2970226    "0/0"         "0/1"         "0/0"        
## HiC_scaffold_1_3329447    "0/0"         "0/0"         "0/0"        
## HiC_scaffold_1_3795100    "1|1"         "0|1"         "0|1"        
## HiC_scaffold_10_2221345   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_10_2299490   "0/0"         NA            "1|1"        
## HiC_scaffold_10_2565301   NA            "1/1"         "1/1"        
## HiC_scaffold_10_3864355   "0/1"         "0/1"         "0/0"        
## HiC_scaffold_10_4319900   "1|1"         NA            "1|1"        
## HiC_scaffold_10_4319907   "1|1"         NA            "1|1"        
## HiC_scaffold_10_5404579   "0/1"         "1/1"         "0|1"        
## HiC_scaffold_10_5843373   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_100_854947   "0/0"         NA            "0/0"        
## HiC_scaffold_100_1070817  NA            "0/0"         "0/0"        
## HiC_scaffold_100_2002094  "0|2"         "0|1"         "0|1"        
## HiC_scaffold_100_2002097  "0|1"         "0|1"         "0|1"        
## HiC_scaffold_100_2010331  "0/1"         "1|1"         "1|1"        
## HiC_scaffold_100_5186498  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_100_5828477  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_100_6470419  "1|1"         "0|1"         "0/0"        
## HiC_scaffold_100_6739225  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_100_6739258  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_100_6739264  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_100_6907177  "0/0"         "0/1"         NA           
## HiC_scaffold_100_8384481  "0/0"         NA            "0|1"        
## HiC_scaffold_100_8384495  "0/0"         NA            "0|1"        
## HiC_scaffold_100_9451470  "0/1"         "0/1"         "0/1"        
## HiC_scaffold_100_10464574 "0/0"         "0/0"         "0/0"        
## HiC_scaffold_100_11934792 "0|1"         "0/0"         NA           
## HiC_scaffold_100_11980177 "1/1"         "1|1"         "1|1"        
## HiC_scaffold_100_18465760 "0|1"         "0/0"         "0|1"        
## HiC_scaffold_100_18465762 "0|1"         "0/0"         "0|1"        
## HiC_scaffold_100_18466205 "0/2"         "0/2"         "0/0"        
## HiC_scaffold_100_31738115 "0/1"         "0/1"         "0/0"        
## HiC_scaffold_100_44227362 "0/0"         "1/1"         "0/0"        
## HiC_scaffold_101_12808961 "1|1"         "0|1"         "0/0"        
## HiC_scaffold_101_13897149 "1/1"         "1/1"         "0/0"        
## HiC_scaffold_101_18337279 "0/0"         "0/0"         "1/1"        
## HiC_scaffold_101_20800167 "1/1"         "1/1"         "1/1"        
## HiC_scaffold_102_2260041  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_102_8734519  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_102_10233999 "0/0"         "1|1"         "1|1"        
## HiC_scaffold_102_11446042 "0/0"         "0/0"         "1/1"        
## HiC_scaffold_102_15918694 "1|1"         "0/0"         "1/1"        
## HiC_scaffold_102_15935667 "1/1"         "0/0"         "0/0"        
## HiC_scaffold_102_17442643 "1/1"         "1/1"         NA           
## HiC_scaffold_102_17608969 "0/1"         "0/1"         "0/1"        
## HiC_scaffold_102_20180185 "1/1"         "0/0"         "0/0"        
## HiC_scaffold_102_24788723 "0/1"         "0/0"         "0/0"        
## HiC_scaffold_102_25423729 "1|1"         "0/1"         "1|1"        
## HiC_scaffold_102_39755142 "1/1"         "0/1"         "1/1"        
## HiC_scaffold_102_52046978 "0/0"         "0/1"         "1/1"        
## HiC_scaffold_1027_34152   "0/1"         "0/0"         "0/1"        
## HiC_scaffold_103_601715   "1/1"         "0/1"         "0/1"        
## HiC_scaffold_103_2891384  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_103_8191270  "1|1"         "0/0"         NA           
## HiC_scaffold_103_9521272  NA            "1/1"         "1/1"        
## HiC_scaffold_103_14768909 "0/0"         "1|1"         "1|1"        
## HiC_scaffold_103_19312119 "1|1"         "1/1"         "0|1"        
## HiC_scaffold_103_21284866 "0/0"         "0/0"         "0/0"        
## HiC_scaffold_103_31428453 "0|1"         "0/0"         "0|1"        
## HiC_scaffold_103_42567396 "0/0"         "0/0"         "0/1"        
## HiC_scaffold_103_45921571 "0|1"         "0|1"         "0/0"        
## HiC_scaffold_103_45921573 "0|1"         "0|1"         "0/0"        
## HiC_scaffold_103_49592022 "0/1"         "0/0"         "0/0"        
## HiC_scaffold_103_49620132 "1|1"         "1|1"         "1|1"        
## HiC_scaffold_103_50440915 NA            "0/0"         "0/0"        
## HiC_scaffold_103_51944137 "1/1"         "1/1"         "0/0"        
## HiC_scaffold_103_54308582 "0/0"         "0/0"         "1|1"        
## HiC_scaffold_103_54424067 "0/0"         "0/0"         "1|1"        
## HiC_scaffold_103_56932900 "1/1"         "1/1"         "1/1"        
## HiC_scaffold_103_57470264 NA            "1|1"         "1|1"        
## HiC_scaffold_104_7771140  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_104_9103028  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_104_10633168 NA            "0/0"         "1/1"        
## HiC_scaffold_104_18917031 "0/1"         "1/1"         NA           
## HiC_scaffold_104_20851902 "0/0"         "0/0"         "0/0"        
## HiC_scaffold_104_24451803 "0/0"         "0/0"         "0/1"        
## HiC_scaffold_104_28597688 "0/1"         "0/1"         "0/1"        
## HiC_scaffold_104_40927999 "1/1"         "1/1"         "1/1"        
## HiC_scaffold_104_46490074 "0/0"         "0/0"         "0/0"        
## HiC_scaffold_104_49759053 "1/1"         "0/0"         "0/0"        
## HiC_scaffold_104_57267896 "1/1"         "1/1"         "0/1"        
## HiC_scaffold_104_62570010 "1/1"         "0/0"         "0/0"        
## HiC_scaffold_11_32804173  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_11_34516508  NA            NA            "1/1"        
## HiC_scaffold_11_35332996  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_11_35904027  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_11_41539793  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_11_41604080  NA            "1|1"         NA           
## HiC_scaffold_11_42855323  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_11_45339409  "0|1"         "0/0"         "1/1"        
## HiC_scaffold_11_45339410  "0/1"         NA            "0/0"        
## HiC_scaffold_11_47544035  "1/1"         NA            "1/1"        
## HiC_scaffold_12_7515164   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_12_12640100  NA            "0/0"         "0/0"        
## HiC_scaffold_12_12826705  "0/1"         "0/0"         NA           
## HiC_scaffold_12_14899285  "0/1"         "0/1"         "0/1"        
## HiC_scaffold_12_17465672  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_12_22770710  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_12_32318964  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_12_35136373  "0/0"         NA            "0/0"        
## HiC_scaffold_12_40687860  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_13_2938168   "0/1"         "1/1"         "1/1"        
## HiC_scaffold_13_20350974  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_13_27759554  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_13_28146828  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_13_28146830  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_13_28925343  NA            NA            "1|1"        
## HiC_scaffold_13_31913129  NA            "1/1"         "1/1"        
## HiC_scaffold_13_32078924  "0|1"         "0/0"         "0/0"        
## HiC_scaffold_13_33864805  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_13_34892542  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_13_34893103  "1/1"         NA            "0/0"        
## HiC_scaffold_13_35762551  "1|1"         "1|1"         "0|1"        
## HiC_scaffold_13_35881745  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_13_35881749  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_14_3843214   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_14_25884262  "0/1"         NA            "0|1"        
## HiC_scaffold_14_27050415  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_14_27118495  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_14_27277222  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_14_29215814  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_15_2460398   "0|1"         "1|1"         "0|1"        
## HiC_scaffold_15_2462980   "1/1"         "0/1"         "1/1"        
## HiC_scaffold_15_2467289   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_15_5669141   "0/0"         "1/1"         "1/1"        
## HiC_scaffold_15_13700694  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_15_17825275  "0|1"         "0|1"         "0/0"        
## HiC_scaffold_15_19938475  NA            "0/1"         NA           
## HiC_scaffold_15_23865956  NA            "1|1"         "1|1"        
## HiC_scaffold_15_28837774  NA            "1/1"         "1/1"        
## HiC_scaffold_15_28837810  NA            "0/1"         "1/1"        
## HiC_scaffold_15_28837823  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_15_28837835  "0|1"         "0|1"         "1|1"        
## HiC_scaffold_15_28837841  "0|1"         "0|1"         "1|1"        
## HiC_scaffold_15_28837854  "1/1"         "0/1"         "0/0"        
## HiC_scaffold_15_34827832  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_15_34893807  "0/1"         "0/1"         "0/1"        
## HiC_scaffold_15_35327348  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_15_42161112  "1|1"         "1|1"         NA           
## HiC_scaffold_15_42164926  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_15_42164946  "1/1"         "0/1"         "0/1"        
## HiC_scaffold_15_46289572  "0|1"         "0/0"         "1/1"        
## HiC_scaffold_15_50591576  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_15_50759128  "1|1"         "1|1"         "0/1"        
## HiC_scaffold_15_51188336  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_15_54726640  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_15_54788235  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_15_56162375  "0|1"         "1/1"         "1|1"        
## HiC_scaffold_15_61091106  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_15_61464359  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_15_61510386  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_15_62309788  NA            "1|1"         "1|1"        
## HiC_scaffold_15_62309793  NA            "1|1"         "1|1"        
## HiC_scaffold_15_62771254  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_15_63493927  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_15_64997502  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_15_65007865  NA            "1|1"         "1/1"        
## HiC_scaffold_15_65007879  "0/0"         "0|1"         "0/1"        
## HiC_scaffold_15_66038529  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_15_69811281  "0/1"         "0/0"         NA           
## HiC_scaffold_16_14205925  NA            "1/1"         "0/0"        
## HiC_scaffold_16_30404047  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_16_57413288  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_16_63687578  "0/1"         "0/0"         "0/1"        
## HiC_scaffold_16_74138787  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_16_74140106  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_16_76276015  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_17_11390873  "1|1"         "0|1"         "0/0"        
## HiC_scaffold_17_12551128  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_17_16615612  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_17_18838093  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_17_22801072  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_17_23788599  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_17_29383895  NA            "0/0"         "0/0"        
## HiC_scaffold_17_29618771  "0/0"         NA            "0/0"        
## HiC_scaffold_17_29976139  "1/1"         "0/1"         "0/1"        
## HiC_scaffold_17_31107213  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_17_32493792  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_17_33732050  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_17_33801314  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_17_34081889  NA            NA            "1/1"        
## HiC_scaffold_18_227565    "0/0"         "0/0"         "0/0"        
## HiC_scaffold_18_1213486   "1/1"         NA            "0/1"        
## HiC_scaffold_18_1701312   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_18_3506437   "1/1"         "0/0"         NA           
## HiC_scaffold_18_6304978   NA            "0/0"         "0/0"        
## HiC_scaffold_18_6351493   "0/1"         "0/1"         "0/1"        
## HiC_scaffold_18_6358009   "1/1"         "0|1"         "1/1"        
## HiC_scaffold_18_10770701  "1/1"         NA            "0/0"        
## HiC_scaffold_18_13342858  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_18_20045832  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_18_22682683  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_18_26337790  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_18_48929148  NA            "0/0"         "0/0"        
## HiC_scaffold_18_51490626  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_18_53723137  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_18_54496637  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_18_55294388  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_19_279726    "0/0"         "1/1"         "0/1"        
## HiC_scaffold_19_6426572   "0/1"         "0/0"         "0/1"        
## HiC_scaffold_19_6575887   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_19_7755254   "1/1"         "1/1"         "1|1"        
## HiC_scaffold_19_9301421   "1/1"         "1|1"         "0/0"        
## HiC_scaffold_19_9357388   "1|1"         NA            NA           
## HiC_scaffold_19_9778841   "0/0"         "1/1"         "0/1"        
## HiC_scaffold_19_10928976  "0/0"         "1|1"         NA           
## HiC_scaffold_19_10928980  "0/0"         "1|1"         NA           
## HiC_scaffold_19_10928982  NA            "0/0"         "0/0"        
## HiC_scaffold_19_11106347  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_19_11590139  "0/1"         "0/1"         "1/1"        
## HiC_scaffold_19_11665300  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_19_14793640  "0/1"         NA            "0/1"        
## HiC_scaffold_19_22112743  NA            "0/0"         "0/0"        
## HiC_scaffold_19_25473671  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_19_25473692  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_19_28110829  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_19_28465002  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_19_28465167  "0/0"         "0|1"         "0/0"        
## HiC_scaffold_19_30106869  "0/1"         "0/0"         NA           
## HiC_scaffold_19_52538858  "1/1"         NA            "1/1"        
## HiC_scaffold_19_52596196  "0/1"         "1|1"         NA           
## HiC_scaffold_19_53482993  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_19_54312637  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_19_59345841  NA            "1|1"         "0/0"        
## HiC_scaffold_2_3296144    "0/0"         "1|1"         "1|1"        
## HiC_scaffold_2_3418589    "0/1"         "0/0"         "0/0"        
## HiC_scaffold_2_3864060    "0/0"         "1/1"         NA           
## HiC_scaffold_2_4104755    "0/0"         "0/0"         "0/0"        
## HiC_scaffold_2_4104758    "0/0"         "0/0"         "0/0"        
## HiC_scaffold_2_8316721    "0/1"         "0/1"         NA           
## HiC_scaffold_2_9098999    "0/1"         "1/1"         "1/1"        
## HiC_scaffold_2_10457537   "0/0"         "1/1"         "1/1"        
## HiC_scaffold_2_19048125   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_2_21748201   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_2_33187764   NA            "0/0"         "0/1"        
## HiC_scaffold_2_33187770   "0/0"         "0/0"         "0|1"        
## HiC_scaffold_2_33187959   "0/0"         "0/1"         "0/0"        
## HiC_scaffold_2_41603929   "0/1"         "0/1"         "0/1"        
## HiC_scaffold_2_52233191   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_2_52400748   "0/0"         "1/1"         "0/1"        
## HiC_scaffold_2_52403793   "1|1"         "1|1"         NA           
## HiC_scaffold_2_52799130   "1/1"         "0/1"         "0/1"        
## HiC_scaffold_20_10332897  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_20_17198418  NA            "1|1"         "0/0"        
## HiC_scaffold_20_17915398  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_20_18872955  "0/1"         "0/1"         "0/1"        
## HiC_scaffold_20_19055301  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_20_19150094  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_20_20651022  "0/1"         "0/1"         "0/1"        
## HiC_scaffold_20_22651296  NA            "0/0"         "0/0"        
## HiC_scaffold_21_2009156   "0/0"         "0/1"         "0/1"        
## HiC_scaffold_21_2435648   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_21_7164210   "1|1"         "0|1"         NA           
## HiC_scaffold_21_9786512   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_21_12424922  "1/1"         "1/1"         "1|1"        
## HiC_scaffold_21_17966833  "1/1"         "1|1"         "1/1"        
## HiC_scaffold_21_19025429  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_21_20058318  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_21_20562855  "0/0"         "1|1"         "0/1"        
## HiC_scaffold_21_20661860  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_21_20895395  "0/0"         "0|1"         "1|1"        
## HiC_scaffold_21_21158811  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_21_22250857  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_21_22250866  "0/1"         "0/1"         "0/1"        
## HiC_scaffold_21_22257737  NA            "0/0"         "0/1"        
## HiC_scaffold_21_22644667  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_21_22644673  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_21_22666888  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_21_23905416  NA            "0/1"         "0/0"        
## HiC_scaffold_21_23981651  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_21_24287068  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_21_30798434  "0/0"         NA            NA           
## HiC_scaffold_21_35006232  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_21_35779294  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_22_124910    "0/1"         "0/1"         "0/1"        
## HiC_scaffold_22_751023    NA            "0|1"         "0/1"        
## HiC_scaffold_22_1042644   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_22_1044708   NA            "0/1"         "0/0"        
## HiC_scaffold_22_2174911   NA            "1/1"         "1/1"        
## HiC_scaffold_22_3431122   "0/1"         "1|1"         "1|1"        
## HiC_scaffold_22_3446787   "0|1"         "0/0"         "0/1"        
## HiC_scaffold_22_3451756   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_22_3720435   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_22_4065466   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_22_4739889   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_22_4918263   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_22_5750008   "0|0"         "0/1"         "1/1"        
## HiC_scaffold_22_5769942   "1|1"         NA            "1/1"        
## HiC_scaffold_22_28264522  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_22_28265115  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_22_29205851  "1/1"         NA            "1/1"        
## HiC_scaffold_22_29822340  "1/1"         "1/1"         NA           
## HiC_scaffold_22_30797357  "1/1"         "1/1"         NA           
## HiC_scaffold_22_32042610  "0/1"         "1|1"         NA           
## HiC_scaffold_23_11215327  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_23_27081333  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_23_28672255  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_23_29218828  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_23_32528768  NA            "0/0"         "0/0"        
## HiC_scaffold_23_32669383  NA            NA            "0/0"        
## HiC_scaffold_23_33199663  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_23_33245843  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_23_40824545  NA            "0/0"         "1|1"        
## HiC_scaffold_23_41504669  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_24_16622654  "1/1"         "1/1"         NA           
## HiC_scaffold_24_16622681  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_24_19851560  "0/1"         "1/1"         "1|1"        
## HiC_scaffold_24_20590563  "0/1"         "0/1"         "0/0"        
## HiC_scaffold_24_27745754  "0/1"         "1/1"         "0/1"        
## HiC_scaffold_24_28763699  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_24_28763703  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_25_4135969   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_25_4201677   NA            "0/0"         "0/0"        
## HiC_scaffold_25_5872831   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_25_6879627   "1/1"         "1/1"         "0/0"        
## HiC_scaffold_25_8172813   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_25_9969507   "0/1"         "0|1"         "0/1"        
## HiC_scaffold_25_10691336  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_25_21286462  "0/1"         "0|1"         "1/1"        
## HiC_scaffold_26_4086662   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_26_7539671   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_26_8348511   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_26_9043748   NA            "0/0"         "0/0"        
## HiC_scaffold_26_9045655   "0/1"         "1/1"         "1|1"        
## HiC_scaffold_26_11253181  "0/1"         "1|1"         "1/1"        
## HiC_scaffold_26_17828344  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_26_17932520  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_26_17941459  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_26_17960877  "1/1"         "1/1"         NA           
## HiC_scaffold_26_18284041  "0/1"         "0/0"         "0/1"        
## HiC_scaffold_26_18288701  "0|1"         "1|1"         "1|1"        
## HiC_scaffold_26_18294422  "0/1"         "0|1"         "0|1"        
## HiC_scaffold_26_21307365  "0/0"         "1|1"         "1/1"        
## HiC_scaffold_26_22159924  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_26_22161535  "1/1"         "1/1"         "0|2"        
## HiC_scaffold_26_24794176  "1/1"         "1/1"         NA           
## HiC_scaffold_26_28538113  "0|1"         "0|1"         "0|1"        
## HiC_scaffold_26_29031357  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_26_29163462  "0/1"         "0/0"         NA           
## HiC_scaffold_26_42631018  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_26_42634814  NA            "0/0"         "0/1"        
## HiC_scaffold_26_43483190  NA            NA            "1/1"        
## HiC_scaffold_26_49955889  "1/1"         NA            "1/1"        
## HiC_scaffold_26_58342510  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_27_1496120   "1|1"         "1|1"         NA           
## HiC_scaffold_27_1947057   "0/0"         "0/0"         "0/1"        
## HiC_scaffold_27_2359058   "0/1"         "0/0"         "1|1"        
## HiC_scaffold_27_2699645   "1/1"         "0/1"         "1/1"        
## HiC_scaffold_27_4425475   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_27_7539469   "0/0"         "0/1"         "0/1"        
## HiC_scaffold_27_7777122   "0/0"         "0/1"         "0/0"        
## HiC_scaffold_27_16657070  NA            NA            "0/1"        
## HiC_scaffold_27_24539255  "1|1"         "0|1"         "0/1"        
## HiC_scaffold_27_34642359  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_27_34647277  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_27_35380535  "1/1"         "1/1"         NA           
## HiC_scaffold_27_35383230  "0/1"         "1|1"         "1|1"        
## HiC_scaffold_28_21261390  NA            NA            "1|1"        
## HiC_scaffold_28_24490442  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_28_25601927  NA            "0/0"         NA           
## HiC_scaffold_28_31793968  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_28_32126687  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_28_34779518  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_28_36042491  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_28_36692361  "1/1"         "1/1"         "0|1"        
## HiC_scaffold_28_38672993  "0/1"         "0/1"         NA           
## HiC_scaffold_28_39640526  "0|1"         "1/1"         "1|1"        
## HiC_scaffold_28_40169242  NA            "1/1"         "1/1"        
## HiC_scaffold_28_41059640  NA            "1|1"         "1|1"        
## HiC_scaffold_28_42514830  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_28_42601570  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_28_42601585  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_28_43018803  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_28_43036165  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_29_344317    NA            "0/1"         "1/1"        
## HiC_scaffold_29_3811176   "0/1"         "1/1"         "0/1"        
## HiC_scaffold_29_6073993   "0|1"         "0|1"         "1/1"        
## HiC_scaffold_29_6415222   "0/0"         "0/0"         NA           
## HiC_scaffold_29_8224424   "0/1"         "1/1"         "0/0"        
## HiC_scaffold_29_11153624  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_29_11153712  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_29_11167966  NA            "0/0"         "0/1"        
## HiC_scaffold_29_11491468  "0/1"         "0/1"         "0/0"        
## HiC_scaffold_29_12103558  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_29_14279322  "0/1"         "0/0"         "0/1"        
## HiC_scaffold_29_14913907  "0/1"         "0/1"         "0/1"        
## HiC_scaffold_29_16378276  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_29_20635937  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_29_20636787  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_29_22560215  NA            NA            "1/1"        
## HiC_scaffold_29_22561144  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_29_24017849  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_29_31603590  NA            "0/1"         "0/0"        
## HiC_scaffold_3_21670751   "0/1"         NA            "1/1"        
## HiC_scaffold_3_24747014   "1/1"         "1/1"         "0/1"        
## HiC_scaffold_3_27861792   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_3_28057869   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_3_28441436   "0/1"         "1/1"         "1/1"        
## HiC_scaffold_3_28694380   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_3_31361023   "0/0"         "0|1"         NA           
## HiC_scaffold_3_31960572   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_3_32157169   "0/0"         "0/1"         "1/1"        
## HiC_scaffold_3_32159152   NA            "0/0"         "0/1"        
## HiC_scaffold_3_34124237   "0/0"         "0/1"         "1/1"        
## HiC_scaffold_30_14199802  "0/0"         NA            "0/1"        
## HiC_scaffold_30_16052331  "1/1"         NA            "0/0"        
## HiC_scaffold_30_19914075  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_30_20688783  "0/1"         "1/1"         NA           
## HiC_scaffold_30_21446076  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_30_21598563  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_30_22155728  "0/0"         "0/0"         "0|1"        
## HiC_scaffold_31_687411    "0/0"         "0/0"         NA           
## HiC_scaffold_31_3224722   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_31_3574854   "0/0"         NA            "0/1"        
## HiC_scaffold_31_5899551   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_31_5911491   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_31_6297680   NA            "0/0"         "0/1"        
## HiC_scaffold_31_12394016  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_31_12394040  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_31_18612650  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_32_4446859   NA            "1/1"         "0/1"        
## HiC_scaffold_32_5274796   NA            "1/1"         "0/0"        
## HiC_scaffold_32_5275108   "0/1"         NA            "0/1"        
## HiC_scaffold_32_5282358   "0/0"         "0/1"         "0/0"        
## HiC_scaffold_32_5450203   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_32_44200178  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_33_638523    "0/1"         "0|1"         "0/1"        
## HiC_scaffold_33_44489563  "0/1"         "0/1"         "0/1"        
## HiC_scaffold_33_44489988  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_33_47080180  "1/1"         "0/1"         "0/0"        
## HiC_scaffold_33_47495907  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_33_51865876  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_34_1096982   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_34_6091943   "1|1"         "1|1"         NA           
## HiC_scaffold_34_6100160   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_34_24368584  "0/1"         "0/1"         "1/1"        
## HiC_scaffold_35_3233120   "0/1"         "0/0"         "1/1"        
## HiC_scaffold_35_3253574   NA            "1/1"         "0/1"        
## HiC_scaffold_35_5512296   "0/1"         "0/0"         "0/1"        
## HiC_scaffold_35_15114788  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_35_21214090  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_35_21462564  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_35_22746783  NA            "0/0"         NA           
## HiC_scaffold_35_22747085  NA            NA            "0/0"        
## HiC_scaffold_35_23059580  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_35_23158882  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_35_23261143  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_35_24403602  "0/0"         NA            "0/0"        
## HiC_scaffold_35_24403620  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_35_24993986  "0/1"         NA            "1/1"        
## HiC_scaffold_35_24993998  "0|1"         "0|1"         "1|1"        
## HiC_scaffold_36_1538038   "1/1"         "1/1"         "0/1"        
## HiC_scaffold_36_2464728   "1/1"         "0/1"         "1/1"        
## HiC_scaffold_36_5489050   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_36_9673981   "1/1"         "0/1"         "0/0"        
## HiC_scaffold_36_9674127   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_36_9674756   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_36_9676329   NA            "1/1"         "1/1"        
## HiC_scaffold_36_12304516  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_36_12515555  "1|1"         "1|1"         "0|1"        
## HiC_scaffold_36_13092647  "1|1"         "1/1"         "1|1"        
## HiC_scaffold_36_13766994  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_36_14567741  "0/1"         "0/0"         "0/1"        
## HiC_scaffold_36_15530578  "1|1"         NA            "1|1"        
## HiC_scaffold_37_679894    "0/0"         "1/1"         "1/1"        
## HiC_scaffold_37_916693    "0/0"         "0/0"         "0/0"        
## HiC_scaffold_37_928146    "0/0"         NA            "0/1"        
## HiC_scaffold_37_1256768   "0/0"         "1|1"         "0/0"        
## HiC_scaffold_37_1270034   "0/0"         "1/1"         "1/1"        
## HiC_scaffold_37_1770997   "0/0"         NA            "2/2"        
## HiC_scaffold_37_1798298   "0/0"         "1/1"         "1/1"        
## HiC_scaffold_37_2010342   "0/0"         "1|1"         "0/1"        
## HiC_scaffold_37_2141526   "0/0"         NA            "0/0"        
## HiC_scaffold_37_3952190   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_37_3952215   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_37_9915037   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_38_5383430   "0/0"         NA            "0/0"        
## HiC_scaffold_38_5668363   NA            "0/0"         "0/1"        
## HiC_scaffold_38_5879849   NA            "0/0"         "0/1"        
## HiC_scaffold_38_5880155   "0/0"         "1/1"         "1/1"        
## HiC_scaffold_38_10612790  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_38_11940240  "0/0"         "1|1"         "0/1"        
## HiC_scaffold_38_12878826  NA            "1|1"         "0/0"        
## HiC_scaffold_38_12959698  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_38_13087368  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_38_13480648  "1/1"         "1|1"         "0|1"        
## HiC_scaffold_38_13965243  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_38_14089955  "0/0"         NA            "0/1"        
## HiC_scaffold_38_14408072  NA            "1|1"         "1|1"        
## HiC_scaffold_38_14931216  "0/0"         "0|1"         "0/1"        
## HiC_scaffold_38_14978356  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_38_14978367  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_38_15292863  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_38_15306135  "0/1"         "1|1"         "0/1"        
## HiC_scaffold_38_16077506  NA            "1|1"         "1|1"        
## HiC_scaffold_38_16138965  "1/1"         "0/1"         "0/1"        
## HiC_scaffold_38_16226040  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_39_1393769   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_39_2014970   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_39_2014982   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_39_2014985   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_39_2426443   "1|1"         NA            NA           
## HiC_scaffold_39_2485330   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_39_3350506   NA            "0/0"         "0/0"        
## HiC_scaffold_39_5897388   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_39_17631133  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_4_12107187   "0/0"         "1/1"         "1/1"        
## HiC_scaffold_4_18241670   "0/0"         "1|1"         "1|1"        
## HiC_scaffold_4_18241723   "0|1"         "1|1"         "1|1"        
## HiC_scaffold_4_22418566   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_4_27899990   "0/0"         "1/1"         "0/1"        
## HiC_scaffold_4_35575118   "0/1"         "0|1"         "0|1"        
## HiC_scaffold_4_38000967   "0/1"         "1/1"         "1/1"        
## HiC_scaffold_4_50654021   "0/0"         NA            "0/0"        
## HiC_scaffold_40_2243415   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_40_3000572   NA            "1/1"         "0/1"        
## HiC_scaffold_40_3014177   NA            "1/1"         "0/1"        
## HiC_scaffold_40_3027900   "0/0"         "0/0"         "0/1"        
## HiC_scaffold_40_3143834   "1/1"         "1/1"         NA           
## HiC_scaffold_40_3843942   NA            "0|1"         NA           
## HiC_scaffold_40_3847620   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_40_3891007   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_40_3920667   "2/2"         "2/2"         "2/2"        
## HiC_scaffold_40_4177963   "1/1"         "1/1"         "0/1"        
## HiC_scaffold_40_4819107   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_40_4819834   "1|1"         "1/1"         "1|1"        
## HiC_scaffold_40_5788271   NA            "1|1"         "1|1"        
## HiC_scaffold_40_5965269   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_40_6204154   "0/0"         "0/1"         "1/1"        
## HiC_scaffold_40_8387917   "0|1"         "0|1"         NA           
## HiC_scaffold_41_3235384   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_41_3583000   "0/0"         NA            "0/0"        
## HiC_scaffold_41_5334504   "1/1"         "1|1"         "1/1"        
## HiC_scaffold_41_5387631   NA            "0|1"         "1|1"        
## HiC_scaffold_41_6423426   "0/0"         "0/1"         "0/0"        
## HiC_scaffold_41_14359947  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_41_24007593  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_41_26225447  "0/1"         NA            "1|1"        
## HiC_scaffold_41_28626484  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_41_28660620  "0|1"         "0/0"         "0/0"        
## HiC_scaffold_41_31007688  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_42_1131084   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_42_1818523   "0/0"         "0/1"         NA           
## HiC_scaffold_42_2165002   NA            "0/0"         "0/0"        
## HiC_scaffold_42_2711332   "0/0"         NA            "0/0"        
## HiC_scaffold_42_6142699   "0/0"         "1/1"         "0/1"        
## HiC_scaffold_42_6744976   "1/1"         NA            "1/1"        
## HiC_scaffold_42_8066919   "0/1"         "0/0"         "1|1"        
## HiC_scaffold_42_8068292   "0/0"         "0|1"         "1|1"        
## HiC_scaffold_42_12487888  NA            "0|1"         "1|1"        
## HiC_scaffold_42_41366687  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_42_47313337  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_42_47313338  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_42_50784971  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_42_50784977  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_42_50784981  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_42_51916989  "1/1"         NA            "1/1"        
## HiC_scaffold_43_3842003   "0/1"         "1/1"         NA           
## HiC_scaffold_43_14140861  NA            "1|1"         "1|1"        
## HiC_scaffold_43_15053605  "1/1"         NA            NA           
## HiC_scaffold_43_17289945  "0/0"         "1|1"         "0/1"        
## HiC_scaffold_43_29967704  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_43_35745831  NA            "1|1"         NA           
## HiC_scaffold_43_37627949  "0|1"         "0|1"         "0|1"        
## HiC_scaffold_43_37628126  "0/0"         NA            "0/0"        
## HiC_scaffold_43_44017118  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_43_55124138  "0/0"         "0/0"         "0|1"        
## HiC_scaffold_43_60107326  "0|1"         "1|1"         "0|1"        
## HiC_scaffold_43_61359386  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_43_61702593  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_43_61702606  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_43_61702721  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_43_61702738  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_43_62511703  NA            NA            "0/1"        
## HiC_scaffold_43_64069457  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_43_64577269  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_44_1920144   "1|1"         "0/1"         "0/0"        
## HiC_scaffold_44_2148035   "0/1"         NA            NA           
## HiC_scaffold_44_2568167   NA            "1/1"         "1/1"        
## HiC_scaffold_45_4180070   "0/0"         "0/1"         NA           
## HiC_scaffold_45_4797754   "2/2"         "0/0"         "0/0"        
## HiC_scaffold_45_5911123   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_45_6958990   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_45_8516216   NA            "1|1"         "1|1"        
## HiC_scaffold_45_10191213  NA            "1/1"         "1/1"        
## HiC_scaffold_45_12005885  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_45_12006766  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_45_24736172  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_45_24739830  "0/0"         "0/1"         "1|1"        
## HiC_scaffold_46_9691567   "0|1"         "0/0"         "0/1"        
## HiC_scaffold_46_17380257  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_46_18387147  "0/0"         NA            "0/0"        
## HiC_scaffold_46_37092355  "0/0"         NA            "0/1"        
## HiC_scaffold_46_39183624  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_46_39390547  "1|1"         "1|1"         NA           
## HiC_scaffold_46_42964941  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_46_42986653  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_46_52074364  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_46_54255667  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_47_3750532   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_47_3751345   "1|1"         "1/1"         "1/1"        
## HiC_scaffold_47_15400639  "0|1"         "1|1"         "1|1"        
## HiC_scaffold_47_24072414  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_47_25273825  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_48_8752752   NA            NA            NA           
## HiC_scaffold_48_10765920  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_48_16077918  "1|1"         "1|1"         "0|1"        
## HiC_scaffold_48_16077940  "1|1"         "1|1"         "0|1"        
## HiC_scaffold_48_16411609  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_48_19972580  "0/1"         "0/0"         "0/1"        
## HiC_scaffold_48_23493079  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_48_23597210  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_48_24478493  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_48_24881148  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_48_25865723  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_48_25984068  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_48_25989079  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_48_30601375  "0/0"         NA            "0/0"        
## HiC_scaffold_48_31662115  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_48_41971562  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_49_3392801   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_49_6101692   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_49_7996315   "0/1"         "0/1"         "1/1"        
## HiC_scaffold_49_9470474   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_49_9886007   "1/1"         "0/0"         "0/1"        
## HiC_scaffold_49_12592113  "0/0"         "0/1"         NA           
## HiC_scaffold_49_12741575  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_49_15135019  "0/1"         "0/0"         "0/1"        
## HiC_scaffold_49_25906219  NA            "1|1"         "1|1"        
## HiC_scaffold_49_26614199  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_49_26655554  "0/0"         NA            "1/1"        
## HiC_scaffold_49_37568341  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_49_37568353  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_49_40002255  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_49_40003229  NA            "0/0"         "0/1"        
## HiC_scaffold_49_42966376  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_5_801252     "1/1"         "0/1"         "0/0"        
## HiC_scaffold_5_1446603    "0|1"         "0|1"         "0/0"        
## HiC_scaffold_5_1446611    "0|1"         "0|1"         "0/0"        
## HiC_scaffold_5_1530759    "0/0"         "0|1"         "0/1"        
## HiC_scaffold_5_1539275    "0/0"         "2|2"         "0/0"        
## HiC_scaffold_5_1789576    NA            "0/0"         "0/0"        
## HiC_scaffold_5_1808197    "0/0"         "0/1"         "1/1"        
## HiC_scaffold_5_1808204    "1/1"         "0/1"         "0/0"        
## HiC_scaffold_5_1943895    "1|1"         NA            "0/1"        
## HiC_scaffold_5_1944469    "1/1"         "0/1"         "0|1"        
## HiC_scaffold_5_2857283    "1/1"         "0/1"         "1/1"        
## HiC_scaffold_5_4061378    "1/1"         "0/0"         "0/0"        
## HiC_scaffold_5_4340647    "0/0"         "1|1"         "1|1"        
## HiC_scaffold_5_4435246    "0/0"         "1/1"         "0/0"        
## HiC_scaffold_5_8868783    NA            "1/1"         "1/1"        
## HiC_scaffold_50_4315969   NA            "0/1"         "1/1"        
## HiC_scaffold_50_11652296  NA            NA            "1/1"        
## HiC_scaffold_50_11657309  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_50_15521027  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_50_21050962  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_50_23686202  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_50_27393462  NA            "0/0"         "0/0"        
## HiC_scaffold_50_42586883  "0/0"         NA            "0/0"        
## HiC_scaffold_50_45087211  "1/1"         "1/1"         NA           
## HiC_scaffold_50_49796550  NA            "1/1"         "1/1"        
## HiC_scaffold_50_54383367  "0/0"         "0/1"         NA           
## HiC_scaffold_50_63318678  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_51_3521000   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_51_4681905   "1/1"         "1/1"         "0/1"        
## HiC_scaffold_51_6305599   "0/1"         "0/1"         "0/0"        
## HiC_scaffold_51_8530818   "1|1"         "0/1"         "1|1"        
## HiC_scaffold_51_11653312  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_51_13138547  "1|1"         "1|1"         NA           
## HiC_scaffold_51_14457091  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_51_15512668  NA            NA            "1/1"        
## HiC_scaffold_51_17816346  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_51_19997934  "0|1"         "1|1"         "1|1"        
## HiC_scaffold_51_19997936  "0|1"         "1|1"         "1|1"        
## HiC_scaffold_51_20870773  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_51_26660104  NA            "0|1"         "1|1"        
## HiC_scaffold_51_40727521  "1|1"         "0/1"         "1|1"        
## HiC_scaffold_51_40892841  "0/1"         "0/1"         "0/0"        
## HiC_scaffold_51_41717519  "0/1"         "0/1"         "0/1"        
## HiC_scaffold_51_42547638  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_52_3335804   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_52_4149130   "0/1"         "0/1"         "0/0"        
## HiC_scaffold_52_6893679   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_52_13155416  NA            "1/1"         "0/1"        
## HiC_scaffold_52_13155437  NA            "1|1"         "0|1"        
## HiC_scaffold_52_13155442  NA            "1|1"         "0|1"        
## HiC_scaffold_52_14885688  "0|1"         "0/0"         "1|1"        
## HiC_scaffold_52_14895078  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_52_15141791  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_52_15743051  "0/0"         "0/0"         NA           
## HiC_scaffold_52_15760201  "0/1"         "0/1"         "0/0"        
## HiC_scaffold_52_15834589  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_52_15841769  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_52_15862421  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_52_15970970  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_52_16275237  NA            "0/0"         "0/1"        
## HiC_scaffold_52_16275240  NA            "1|1"         "0/0"        
## HiC_scaffold_52_16275290  NA            "1|1"         "0/0"        
## HiC_scaffold_52_16524164  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_52_16524572  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_52_16525647  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_52_16637047  NA            "0/1"         NA           
## HiC_scaffold_52_17202127  "0/1"         "1|1"         "1|1"        
## HiC_scaffold_52_17207724  "1/1"         NA            "1/1"        
## HiC_scaffold_52_17508820  "0/0"         "0/1"         "1|1"        
## HiC_scaffold_52_17547593  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_52_17551239  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_52_17560696  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_52_17560699  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_52_17741250  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_52_17742260  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_52_18340578  NA            "0/0"         "0/0"        
## HiC_scaffold_52_18415911  "1/1"         "1/1"         "1|1"        
## HiC_scaffold_52_22189517  "1/1"         "0/1"         "0/0"        
## HiC_scaffold_52_22526592  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_52_26393471  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_52_26799380  NA            "0/1"         "0/0"        
## HiC_scaffold_52_31871931  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_52_31874283  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_52_31874287  NA            "0/0"         "0/0"        
## HiC_scaffold_52_32161053  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_52_33165557  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_52_33897620  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_52_34763156  NA            "0/1"         "0|1"        
## HiC_scaffold_52_34763171  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_52_35174755  "0/1"         "0/0"         NA           
## HiC_scaffold_52_35608453  "1/1"         "0/1"         "0/1"        
## HiC_scaffold_52_35608470  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_52_39464728  NA            "1|1"         "1|1"        
## HiC_scaffold_52_42141354  NA            NA            "0/1"        
## HiC_scaffold_52_44675725  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_52_49935920  "1/1"         "0/0"         "0|1"        
## HiC_scaffold_53_21789524  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_53_25168042  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_53_26398989  "0/0"         "0|1"         "0|1"        
## HiC_scaffold_53_26398992  "0/0"         "0|1"         "0|1"        
## HiC_scaffold_53_26398994  "0/0"         "0|1"         "0|1"        
## HiC_scaffold_53_26549665  "1/1"         "1/1"         NA           
## HiC_scaffold_53_29227676  "0|1"         "0|1"         "0/0"        
## HiC_scaffold_53_31250349  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_54_530581    "0|1"         "1|1"         "1|1"        
## HiC_scaffold_54_794095    "1|1"         "1|1"         "1|1"        
## HiC_scaffold_54_1171109   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_54_1378956   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_54_1380539   "0/1"         "1/1"         "1/1"        
## HiC_scaffold_54_3045015   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_54_3185987   "0/1"         "0/1"         "0/0"        
## HiC_scaffold_54_4401098   "0/0"         "0|1"         "0|1"        
## HiC_scaffold_54_5595903   "0/1"         "1/1"         NA           
## HiC_scaffold_54_5595921   "0/0"         "0/1"         NA           
## HiC_scaffold_54_5595928   "0/0"         "0/0"         NA           
## HiC_scaffold_54_5595949   "0/0"         "0/0"         NA           
## HiC_scaffold_54_6649662   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_54_8036734   "0/0"         "0/1"         NA           
## HiC_scaffold_54_9206614   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_54_35913192  "1/1"         "0/1"         "0/1"        
## HiC_scaffold_54_35913282  "0/0"         "0/0"         "0|1"        
## HiC_scaffold_54_35913283  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_55_1260491   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_55_3254027   "1/1"         NA            "1/1"        
## HiC_scaffold_55_3281985   "0/0"         "1|1"         "1|1"        
## HiC_scaffold_55_5409544   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_55_5411094   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_55_5411115   "1|1"         "1/1"         "1|1"        
## HiC_scaffold_55_18121799  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_55_19605809  "0/1"         "1|1"         "0/1"        
## HiC_scaffold_55_19605817  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_55_19605821  "1|1"         "1|1"         "1/1"        
## HiC_scaffold_55_20195204  "0/1"         "0/1"         NA           
## HiC_scaffold_55_20886967  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_55_23222937  NA            "0/1"         "0/1"        
## HiC_scaffold_55_23626331  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_55_24539590  NA            "0/0"         "1/1"        
## HiC_scaffold_55_24585939  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_55_34174151  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_56_17874332  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_56_18635259  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_56_23654344  "1/1"         "0/0"         NA           
## HiC_scaffold_56_35850533  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_56_35850539  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_56_40813556  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_56_53211633  "0/0"         "0/1"         "0|1"        
## HiC_scaffold_56_60070829  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_56_73286017  "1/1"         "0/1"         "0/0"        
## HiC_scaffold_56_73829442  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_56_73829443  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_56_76060304  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_57_25306408  NA            "0/0"         "0/0"        
## HiC_scaffold_57_29222385  NA            "0|1"         NA           
## HiC_scaffold_57_29592432  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_57_31472698  "0/0"         NA            "0/1"        
## HiC_scaffold_57_32371742  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_57_36495072  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_57_37286264  NA            "1/1"         "0/0"        
## HiC_scaffold_57_38537415  NA            "1|1"         "0/1"        
## HiC_scaffold_57_45438854  "2|2"         "1|1"         "1|2"        
## HiC_scaffold_57_52856874  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_57_53575355  "0/0"         NA            "0/0"        
## HiC_scaffold_57_55856783  "1/1"         "1/1"         NA           
## HiC_scaffold_58_1362614   "0/0"         "0/1"         "0/0"        
## HiC_scaffold_58_1432845   "1/1"         NA            "1/1"        
## HiC_scaffold_58_1541720   NA            "0/0"         "0/0"        
## HiC_scaffold_58_2777120   "1/1"         "0/1"         "1/1"        
## HiC_scaffold_58_2973169   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_58_3243043   "0/0"         NA            "0/0"        
## HiC_scaffold_58_4035282   NA            "1/1"         "1/1"        
## HiC_scaffold_58_5442157   "1|1"         "0/0"         "0/1"        
## HiC_scaffold_58_8004631   "1/1"         "1/1"         "1|1"        
## HiC_scaffold_58_8058998   NA            NA            "0/0"        
## HiC_scaffold_58_8932837   "0/0"         "0/1"         "0/1"        
## HiC_scaffold_58_14814944  "0/0"         NA            "1/1"        
## HiC_scaffold_58_15639988  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_58_15707198  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_58_15707258  NA            "1/1"         "1/1"        
## HiC_scaffold_58_15710623  NA            "0/0"         "1/1"        
## HiC_scaffold_58_19155063  "1|1"         "0/0"         "0/1"        
## HiC_scaffold_58_20224050  "1/1"         NA            "0|1"        
## HiC_scaffold_58_38475355  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_59_3979055   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_59_5071810   "1|1"         NA            NA           
## HiC_scaffold_59_5349936   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_59_5350114   "0/0"         "0/1"         "0/0"        
## HiC_scaffold_59_7738302   "0/1"         "1/1"         "1/1"        
## HiC_scaffold_59_7738351   "0/0"         "1/1"         NA           
## HiC_scaffold_59_7958561   "0/0"         NA            "0/0"        
## HiC_scaffold_59_9273798   "1/1"         "0/0"         "0/1"        
## HiC_scaffold_59_50928099  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_59_52960060  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_6_10569023   "1/1"         "0/0"         "1/1"        
## HiC_scaffold_6_10711445   "1/1"         "0/0"         "1/1"        
## HiC_scaffold_6_13209200   "0/0"         "0/1"         NA           
## HiC_scaffold_6_13213107   "0/0"         "0/1"         "1/1"        
## HiC_scaffold_6_13311684   "1|1"         "1/1"         "1/1"        
## HiC_scaffold_6_15670783   "0/1"         "0|1"         NA           
## HiC_scaffold_6_19111232   "0/1"         "1/1"         "0/0"        
## HiC_scaffold_6_32805498   "1/1"         "0/0"         NA           
## HiC_scaffold_6_38793174   "0/0"         "0/1"         "1|1"        
## HiC_scaffold_6_41092101   "0/1"         "0/1"         "1|1"        
## HiC_scaffold_6_41342933   "0/1"         "0/0"         "1/1"        
## HiC_scaffold_6_47594508   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_60_70878     "0|1"         "0|1"         "1|1"        
## HiC_scaffold_60_99549     "1|1"         "0/1"         "0|1"        
## HiC_scaffold_60_201823    "1/1"         "1/1"         "1/1"        
## HiC_scaffold_60_712969    "1|1"         "1|1"         "1|1"        
## HiC_scaffold_60_744783    "0|0"         "0/0"         "0/0"        
## HiC_scaffold_60_744788    "1|1"         "0/1"         "0/0"        
## HiC_scaffold_60_22142128  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_60_27599770  "1/1"         "1/1"         NA           
## HiC_scaffold_60_30608878  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_60_32657324  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_60_32672580  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_60_38856893  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_60_39028335  NA            "1/1"         "1/1"        
## HiC_scaffold_60_40296869  "0/1"         NA            "0/0"        
## HiC_scaffold_60_42775723  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_60_44687906  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_60_44804601  "0/1"         "0/1"         "0/0"        
## HiC_scaffold_60_53696867  "0|1"         "0|1"         "1|1"        
## HiC_scaffold_60_53696868  "0|1"         "0|1"         "1|1"        
## HiC_scaffold_60_60651515  "0/1"         NA            "0/1"        
## HiC_scaffold_60_70678462  NA            "0/1"         "1/1"        
## HiC_scaffold_61_2205328   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_61_2491706   "1|1"         "1/1"         "1/1"        
## HiC_scaffold_61_4009916   "0/0"         "0/0"         "2/2"        
## HiC_scaffold_61_4062917   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_61_4122763   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_61_4216461   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_61_4325053   "0/1"         "0/1"         "0/0"        
## HiC_scaffold_61_9004838   NA            "0/0"         "1|1"        
## HiC_scaffold_61_14635083  "0/1"         "0/1"         "0/0"        
## HiC_scaffold_62_1128608   NA            "0|1"         "1/1"        
## HiC_scaffold_62_11335200  "0/0"         "0/0"         "2|2"        
## HiC_scaffold_62_18828476  "0/1"         "0/1"         "1/1"        
## HiC_scaffold_62_21548870  "0|1"         "0/1"         "1|1"        
## HiC_scaffold_62_23103274  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_62_25793456  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_62_25887474  "0/1"         "0/0"         "0/1"        
## HiC_scaffold_62_28516096  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_62_28516099  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_62_28818725  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_62_28818729  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_62_45207353  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_63_3092269   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_63_3977940   "1/1"         "0/1"         "0/1"        
## HiC_scaffold_63_4084937   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_63_4196326   "1/1"         "0/1"         "0/0"        
## HiC_scaffold_63_6262453   "0/0"         "0/0"         "0/1"        
## HiC_scaffold_63_6350204   "1/1"         "0/1"         "0/0"        
## HiC_scaffold_63_6458794   "0|1"         NA            "0|1"        
## HiC_scaffold_64_9162978   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_64_16876561  "1|1"         "0|1"         NA           
## HiC_scaffold_64_17543009  "0/0"         "0/0"         NA           
## HiC_scaffold_64_18925356  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_64_19133050  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_64_19627769  "0/0"         NA            "1|1"        
## HiC_scaffold_64_20477250  NA            "0/0"         "0/0"        
## HiC_scaffold_64_22816677  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_64_22954654  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_64_22954658  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_64_22954682  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_65_6829971   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_65_8071102   "1|1"         "0/0"         "1/1"        
## HiC_scaffold_65_9023979   "0/0"         "1/1"         "0/1"        
## HiC_scaffold_65_9839671   "1/1"         "1/1"         NA           
## HiC_scaffold_65_10404778  NA            "0/0"         "0/1"        
## HiC_scaffold_65_11327791  NA            "1/1"         "1/1"        
## HiC_scaffold_65_11332104  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_65_34823822  NA            NA            "0/0"        
## HiC_scaffold_65_51418017  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_65_54053979  NA            "0/1"         "0/0"        
## HiC_scaffold_65_57110875  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_66_15615363  "0/0"         NA            "0/0"        
## HiC_scaffold_66_15672090  "0/1"         "1|1"         "0/0"        
## HiC_scaffold_66_17903445  "0|1"         "0|1"         NA           
## HiC_scaffold_66_18298629  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_66_19730676  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_66_23688768  "0/1"         "0/1"         "0/1"        
## HiC_scaffold_66_26614535  "0/0"         "0/0"         "0|2"        
## HiC_scaffold_66_27445665  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_66_29457165  "0/0"         "0/1"         "1|1"        
## HiC_scaffold_66_29457180  "1|1"         "1/1"         "1/1"        
## HiC_scaffold_66_30116287  "1/1"         "1/1"         "1|1"        
## HiC_scaffold_66_31603503  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_66_33261460  NA            "0/0"         "0/0"        
## HiC_scaffold_66_34138981  "0/0"         "0/1"         NA           
## HiC_scaffold_66_34139020  "1/1"         "0|1"         "1/1"        
## HiC_scaffold_66_34142862  "1|1"         "0/1"         "1/1"        
## HiC_scaffold_67_1404390   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_67_28493665  "1/1"         "0/0"         NA           
## HiC_scaffold_67_30243885  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_67_31511806  "1|1"         "0|1"         "0/0"        
## HiC_scaffold_67_34638092  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_67_37534720  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_67_39679546  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_67_39854918  "0/1"         "0|1"         "1|1"        
## HiC_scaffold_67_39860738  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_67_40331656  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_67_40824747  "1|1"         NA            "1|1"        
## HiC_scaffold_68_3438132   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_68_3438133   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_68_11206902  "0/1"         "0/0"         "0/1"        
## HiC_scaffold_68_32770607  NA            "1|1"         "1|1"        
## HiC_scaffold_68_34016823  "2/2"         "2|2"         "0/0"        
## HiC_scaffold_68_34020019  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_68_40296057  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_68_40296059  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_68_65001879  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_69_23311147  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_69_27351303  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_69_29437208  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_69_33699381  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_69_40194698  "0/1"         "0/1"         "1/1"        
## HiC_scaffold_69_48273575  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_69_48348026  "0/1"         "0/1"         "0/1"        
## HiC_scaffold_69_48348034  "1/1"         "0/1"         "0/1"        
## HiC_scaffold_69_49563252  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_69_49593952  "0/1"         "0/0"         NA           
## HiC_scaffold_69_49859037  "0/0"         NA            "0/0"        
## HiC_scaffold_69_51271238  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_69_51529836  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_69_57313650  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_69_57359194  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_6951_523650  "1/1"         NA            "0/0"        
## HiC_scaffold_6951_897126  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_6951_1134482 "1|1"         "1|1"         NA           
## HiC_scaffold_6951_2484960 "0/0"         "0/1"         "0/0"        
## HiC_scaffold_6951_3301273 "0/0"         "0/0"         "0/0"        
## HiC_scaffold_6951_3314609 NA            "0/0"         "0/0"        
## HiC_scaffold_6951_3945993 NA            "1|1"         NA           
## HiC_scaffold_6958_218293  "2/2"         "0/0"         "0/0"        
## HiC_scaffold_6958_449143  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_7_351023     NA            "0/1"         "0/1"        
## HiC_scaffold_7_488024     "1|1"         "1|1"         "1|1"        
## HiC_scaffold_7_492663     "1/1"         "1/1"         "1/1"        
## HiC_scaffold_7_693567     "1|1"         NA            "1|1"        
## HiC_scaffold_7_2379128    "0/0"         "0/0"         "0/0"        
## HiC_scaffold_7_3087721    "0/1"         "1/1"         "1/1"        
## HiC_scaffold_7_3394880    "0/1"         "0/1"         "0/0"        
## HiC_scaffold_7_22247106   NA            "1|1"         "0/0"        
## HiC_scaffold_70_4632611   "0|1"         "1|1"         "1|1"        
## HiC_scaffold_70_14042778  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_71_410844    "0|1"         "1|1"         "0/0"        
## HiC_scaffold_71_1753451   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_71_2283682   "0|1"         "0|1"         NA           
## HiC_scaffold_71_3439685   "0|2"         "0/0"         "0|2"        
## HiC_scaffold_71_17850462  "0/0"         "0/0"         NA           
## HiC_scaffold_71_20588314  "1|1"         "0/0"         "1/1"        
## HiC_scaffold_71_25465351  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_71_25465352  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_71_26356062  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_72_11785096  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_72_17285854  NA            "1/1"         NA           
## HiC_scaffold_72_23704999  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_72_24465318  "0|1"         "0/1"         "0/1"        
## HiC_scaffold_72_30457277  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_72_32068649  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_72_35058295  "0/1"         "0/1"         "0/1"        
## HiC_scaffold_72_36024997  "0/1"         "1|1"         "1|1"        
## HiC_scaffold_72_37135067  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_72_38410141  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_72_38448056  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_72_41412511  NA            "0/0"         "0/0"        
## HiC_scaffold_73_2192629   NA            "1|1"         NA           
## HiC_scaffold_73_2920208   "1|1"         NA            "1|1"        
## HiC_scaffold_73_4522493   "1|1"         "1|1"         "1/1"        
## HiC_scaffold_73_4748625   NA            NA            "1/1"        
## HiC_scaffold_73_5839336   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_73_9338582   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_73_27393859  NA            NA            "0/0"        
## HiC_scaffold_74_14235619  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_74_14515598  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_74_15116121  NA            "1|1"         "0/1"        
## HiC_scaffold_74_17233613  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_74_17725340  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_74_18418135  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_74_18418138  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_74_21254425  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_74_22261065  "1/1"         NA            "1/1"        
## HiC_scaffold_74_47132519  "0/0"         NA            "1|1"        
## HiC_scaffold_74_50979096  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_74_51060549  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_74_53256803  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_74_55464169  "0/1"         "1/1"         NA           
## HiC_scaffold_74_55515512  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_74_55999260  "1|1"         "0/0"         NA           
## HiC_scaffold_74_57404902  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_74_58181927  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_74_58198600  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_74_63060195  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_75_5345466   "0/1"         "0/0"         NA           
## HiC_scaffold_75_5346522   "0/1"         "1/1"         "0/1"        
## HiC_scaffold_75_5346535   "0/1"         "1/1"         "0/1"        
## HiC_scaffold_75_9850973   "1/1"         NA            "1|1"        
## HiC_scaffold_76_27149820  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_76_31582908  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_76_31792815  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_76_35352820  "1/1"         "0|1"         "0/0"        
## HiC_scaffold_76_57782171  NA            NA            "1/1"        
## HiC_scaffold_76_59862401  "0|1"         "0|1"         NA           
## HiC_scaffold_76_61095594  "0/1"         "1|1"         "0/1"        
## HiC_scaffold_76_65496128  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_76_68965847  "0/1"         "1|1"         "0/1"        
## HiC_scaffold_76_68966411  "0/1"         NA            "0/1"        
## HiC_scaffold_76_69823482  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_76_73343841  "1/1"         NA            "0/1"        
## HiC_scaffold_77_3598274   "0/1"         "1|1"         "1|1"        
## HiC_scaffold_77_6982137   "0|1"         "0/1"         NA           
## HiC_scaffold_77_11021994  "1|1"         "1/1"         "1/1"        
## HiC_scaffold_77_13608165  "0/1"         "0/1"         "0/0"        
## HiC_scaffold_77_16888594  "0/1"         NA            "1/1"        
## HiC_scaffold_77_16888623  NA            "0/0"         "0|1"        
## HiC_scaffold_77_16889448  NA            "0/0"         "0/1"        
## HiC_scaffold_77_39784685  "1|1"         NA            "1|1"        
## HiC_scaffold_77_44375866  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_77_45385370  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_78_5719919   "1/1"         "0/0"         "0/1"        
## HiC_scaffold_78_11353297  "0/0"         "0|1"         "0|1"        
## HiC_scaffold_78_27316392  NA            "1/1"         "0/1"        
## HiC_scaffold_78_48124809  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_78_48124826  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_78_48126176  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_78_48279096  "0/1"         "0/1"         "1/1"        
## HiC_scaffold_78_48434558  "0|1"         "1|1"         "0/1"        
## HiC_scaffold_78_49759181  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_78_49759192  "0/0"         "0/1"         "0|1"        
## HiC_scaffold_78_49759215  "0/1"         "0/0"         "0/1"        
## HiC_scaffold_78_51364025  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_78_55395445  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_78_59610866  NA            "0/1"         "1/1"        
## HiC_scaffold_78_62136661  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_79_1643780   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_79_2519178   NA            "1/1"         "1/1"        
## HiC_scaffold_79_2858100   "1/1"         NA            "0/0"        
## HiC_scaffold_79_3922454   "1/1"         NA            "0/1"        
## HiC_scaffold_79_4127878   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_79_4543693   "1/1"         "0/0"         "1/1"        
## HiC_scaffold_79_11507678  "0/1"         "0/1"         "0/1"        
## HiC_scaffold_79_12618812  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_79_14185404  NA            "1|1"         "1|1"        
## HiC_scaffold_79_17120237  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_79_17120254  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_79_35551507  "0/0"         "0/0"         NA           
## HiC_scaffold_79_35551543  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_79_38927423  "0/0"         NA            "0/1"        
## HiC_scaffold_79_42623307  NA            "1|1"         "1|1"        
## HiC_scaffold_79_43179786  NA            "1|1"         "0/0"        
## HiC_scaffold_79_43180099  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_79_43828078  "0/0"         "0/0"         "0|1"        
## HiC_scaffold_79_43872513  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_79_44627215  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_79_50772769  "0/1"         "1|1"         "0/0"        
## HiC_scaffold_79_55468575  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_79_55816114  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_79_59915784  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_79_60165298  NA            "1|1"         "1/1"        
## HiC_scaffold_79_60165305  NA            "1|1"         "1/1"        
## HiC_scaffold_79_69145556  "0/0"         "0/0"         "0/2"        
## HiC_scaffold_79_70208305  "1|1"         "1|1"         "0|1"        
## HiC_scaffold_79_73412292  NA            "0/0"         "0/0"        
## HiC_scaffold_79_73416663  NA            "1|1"         "0/0"        
## HiC_scaffold_79_73416688  NA            "0|1"         NA           
## HiC_scaffold_79_76863102  "0/1"         "0/1"         "1/1"        
## HiC_scaffold_79_81279649  NA            "0/0"         NA           
## HiC_scaffold_79_81499990  NA            "1/1"         "1/1"        
## HiC_scaffold_79_82319836  NA            NA            "0/0"        
## HiC_scaffold_79_82319849  NA            NA            "1/1"        
## HiC_scaffold_79_83163707  "0/1"         "0/0"         "0/1"        
## HiC_scaffold_79_86283512  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_79_87123758  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_79_88362889  NA            "0/0"         "0/0"        
## HiC_scaffold_79_88599431  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_79_89322919  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_79_89331918  "0/0"         "1/1"         "1|1"        
## HiC_scaffold_79_91340958  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_8_13649836   NA            "1/1"         "1/1"        
## HiC_scaffold_8_13650752   NA            "0|1"         "0|1"        
## HiC_scaffold_8_23818233   "0/1"         "1/1"         "0/1"        
## HiC_scaffold_8_24123972   "0/0"         "1|1"         "0/0"        
## HiC_scaffold_8_24230791   "0/1"         "0/0"         "1/1"        
## HiC_scaffold_8_24588423   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_8_25348483   "0/0"         "0/0"         "0/1"        
## HiC_scaffold_8_25421933   "0/1"         NA            "0/0"        
## HiC_scaffold_8_25772942   "1/1"         "1/1"         "0/1"        
## HiC_scaffold_8_26289589   "1|1"         NA            "0/0"        
## HiC_scaffold_8_27602740   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_8_28159063   "1/1"         "1/1"         NA           
## HiC_scaffold_8_30829320   "0/0"         "0/1"         "0/0"        
## HiC_scaffold_8_31044084   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_8_31415507   "1|2"         "0/0"         "2|2"        
## HiC_scaffold_8_32594682   "0/0"         "0/0"         NA           
## HiC_scaffold_80_3617847   NA            "1/1"         "1/1"        
## HiC_scaffold_80_5758183   "0/0"         "0/1"         "0/0"        
## HiC_scaffold_80_6760006   "1|1"         "0|1"         "1|1"        
## HiC_scaffold_80_6760037   "1/1"         "0/1"         "0/0"        
## HiC_scaffold_80_7772622   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_80_7919533   "0/1"         "0/1"         "0/1"        
## HiC_scaffold_80_8110052   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_80_8193366   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_80_8625784   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_80_8912846   "0/1"         "1/1"         "0/1"        
## HiC_scaffold_80_9544102   "0/0"         "1/1"         "0/1"        
## HiC_scaffold_80_10770701  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_80_11590146  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_80_16953653  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_80_18938832  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_80_19015946  "1|1"         "1/1"         "1/1"        
## HiC_scaffold_80_19404001  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_80_25346708  "0/1"         "0/1"         "1|1"        
## HiC_scaffold_80_37479851  "0/0"         NA            "0/0"        
## HiC_scaffold_80_37507516  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_81_1187192   "0/1"         "1/1"         "1/1"        
## HiC_scaffold_81_2689826   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_81_2690751   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_81_6614123   "0/0"         NA            "0/0"        
## HiC_scaffold_81_7836855   NA            "0/0"         "0/0"        
## HiC_scaffold_81_10334868  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_81_10458752  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_81_17515538  NA            "1/1"         "1/1"        
## HiC_scaffold_81_40271282  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_81_40271294  "1/1"         "1/1"         "0|1"        
## HiC_scaffold_81_41096427  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_81_41096444  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_81_43820595  "0/0"         NA            "1/1"        
## HiC_scaffold_81_43820732  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_81_43854278  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_81_44804862  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_81_45063428  "0/0"         "0|1"         "0/1"        
## HiC_scaffold_81_45950590  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_81_46714752  "1|1"         "0|1"         "0/0"        
## HiC_scaffold_81_46714759  "1|1"         "0|1"         "0/0"        
## HiC_scaffold_81_47170397  "1|1"         NA            "1|1"        
## HiC_scaffold_81_47628201  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_81_48105216  "1|1"         "1|1"         "0|1"        
## HiC_scaffold_81_48932070  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_81_54050146  NA            "1/1"         "1/1"        
## HiC_scaffold_82_5672063   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_82_8796823   "0/1"         "0/1"         "1|1"        
## HiC_scaffold_82_13450959  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_82_26144442  "0/0"         "0|1"         "0/0"        
## HiC_scaffold_82_26147011  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_82_28907834  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_82_34413793  "0|1"         NA            "1|1"        
## HiC_scaffold_82_34413800  "1/1"         NA            "0/0"        
## HiC_scaffold_82_36173035  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_82_40539273  NA            "0/1"         "1/1"        
## HiC_scaffold_82_41470256  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_83_23993605  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_83_35035961  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_83_43423618  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_83_46920654  "0/0"         "1/1"         "1|1"        
## HiC_scaffold_83_46934197  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_84_356301    "0/0"         "0/0"         "0/1"        
## HiC_scaffold_84_5761817   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_84_5769022   NA            "0/0"         "0/0"        
## HiC_scaffold_84_6288130   NA            NA            NA           
## HiC_scaffold_84_6288141   NA            NA            NA           
## HiC_scaffold_84_6288147   NA            NA            NA           
## HiC_scaffold_84_7069238   "1|1"         "0/0"         "1|1"        
## HiC_scaffold_84_9131309   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_84_10148442  "0/1"         "0/1"         "0/1"        
## HiC_scaffold_84_14659391  "0|1"         "0/1"         NA           
## HiC_scaffold_84_16302752  "1/1"         "2|2"         "2|2"        
## HiC_scaffold_84_18463244  "0/1"         "1/1"         NA           
## HiC_scaffold_84_22909575  "0|1"         NA            "1|1"        
## HiC_scaffold_84_29275266  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_84_31184610  "1/1"         "1/1"         NA           
## HiC_scaffold_84_33093169  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_84_37675180  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_84_39501814  "0|1"         "0/1"         "0/1"        
## HiC_scaffold_84_50169438  "0|1"         NA            "0/0"        
## HiC_scaffold_84_50169445  "0|1"         NA            "0/0"        
## HiC_scaffold_84_51231025  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_85_9792207   "1/1"         NA            "0/0"        
## HiC_scaffold_85_11784233  NA            "0/0"         "0/0"        
## HiC_scaffold_85_11911022  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_85_11911142  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_85_11913828  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_85_11913831  "0/1"         "1/1"         "0/1"        
## HiC_scaffold_85_12353081  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_85_12414551  "0/0"         "0/0"         NA           
## HiC_scaffold_85_13043967  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_85_13221888  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_85_27008863  "0/1"         "0/1"         "1/1"        
## HiC_scaffold_85_28992264  "1|1"         "1/1"         "0|1"        
## HiC_scaffold_85_28992268  "1|1"         "1/1"         "1|1"        
## HiC_scaffold_85_64310850  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_85_65135112  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_85_65563529  "0/1"         "0/1"         "0/0"        
## HiC_scaffold_86_1949664   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_86_5340423   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_86_5483991   "0/1"         "1|1"         "1|1"        
## HiC_scaffold_86_8928469   "1/1"         "1|1"         "0/0"        
## HiC_scaffold_86_23727924  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_86_24825818  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_86_25333718  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_86_29668168  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_86_30914243  NA            "1|1"         "1|1"        
## HiC_scaffold_86_32040320  "0|1"         "1|1"         "1|1"        
## HiC_scaffold_86_32040329  "0|1"         "1|1"         "1|1"        
## HiC_scaffold_86_32125061  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_86_32144758  "0/1"         "0/1"         NA           
## HiC_scaffold_86_32153692  NA            "1/1"         "1/1"        
## HiC_scaffold_86_32534129  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_86_32605768  "1|1"         "0/1"         "0/0"        
## HiC_scaffold_86_36355399  "0/1"         "0/1"         "0/0"        
## HiC_scaffold_86_36357265  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_87_1253643   "0/0"         "0/0"         "0/1"        
## HiC_scaffold_87_2137958   NA            "0/1"         "0/0"        
## HiC_scaffold_87_3980100   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_87_4395923   "0/0"         "1/1"         "1/1"        
## HiC_scaffold_87_5489328   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_87_6300441   "1|1"         "1/1"         NA           
## HiC_scaffold_87_16306904  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_87_44780945  "1|1"         "1|1"         "0|1"        
## HiC_scaffold_88_5584327   "1/1"         NA            "0|1"        
## HiC_scaffold_88_7104630   NA            "1|1"         "0/0"        
## HiC_scaffold_88_7104631   NA            "0/0"         "0|1"        
## HiC_scaffold_88_7104638   NA            "1|1"         "0|1"        
## HiC_scaffold_88_7104639   NA            "0/0"         "0|1"        
## HiC_scaffold_88_7104640   NA            "1|1"         "0|1"        
## HiC_scaffold_88_7479340   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_88_8773607   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_88_9883678   NA            "1|1"         "1|1"        
## HiC_scaffold_88_10878718  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_88_19365116  NA            "0/0"         "0/1"        
## HiC_scaffold_88_20477349  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_88_20557885  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_89_675045    NA            "1/1"         "0/1"        
## HiC_scaffold_89_2815845   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_89_2843940   "0/0"         "0/1"         "1/1"        
## HiC_scaffold_89_3018830   "1/1"         "0/1"         "0/1"        
## HiC_scaffold_89_13745506  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_89_30006907  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_89_36509388  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_89_38703735  NA            "0/1"         "0/0"        
## HiC_scaffold_89_38764895  NA            "1/1"         "1/1"        
## HiC_scaffold_89_42052609  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_89_42054991  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_89_44306958  NA            "0/1"         "0/1"        
## HiC_scaffold_89_44338206  NA            "0/1"         "0/0"        
## HiC_scaffold_89_45298973  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_9_3529921    "1/1"         "1/1"         "1/1"        
## HiC_scaffold_9_5660454    NA            "0/0"         "0/1"        
## HiC_scaffold_9_5660461    NA            "1|1"         "0|1"        
## HiC_scaffold_9_5854070    "1/1"         "0/0"         NA           
## HiC_scaffold_9_6142415    "0/0"         "1|1"         "1|1"        
## HiC_scaffold_9_6142436    "0/0"         "0|1"         "1|1"        
## HiC_scaffold_9_6143781    "0/0"         "1/1"         "0/0"        
## HiC_scaffold_9_6654825    "0/0"         "0/0"         "0/0"        
## HiC_scaffold_9_7094545    "0/1"         "1|1"         "1|1"        
## HiC_scaffold_9_7100208    "0/0"         "1|1"         "0|1"        
## HiC_scaffold_9_7109988    "1/1"         "1|1"         "0/0"        
## HiC_scaffold_9_7111922    "1|1"         "1|1"         "0/0"        
## HiC_scaffold_9_8235781    "1/1"         "1/1"         "1/1"        
## HiC_scaffold_9_8279558    NA            "1/1"         "0/1"        
## HiC_scaffold_9_15679481   "0|1"         "0/0"         "0/0"        
## HiC_scaffold_9_18082611   "0/0"         "0/0"         "0/2"        
## HiC_scaffold_9_18090830   NA            "0/1"         "0/0"        
## HiC_scaffold_9_30240531   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_90_10418696  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_90_11470224  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_90_13593319  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_90_16260161  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_90_22325499  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_90_23574204  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_90_23609908  "0/1"         "0/1"         "0/0"        
## HiC_scaffold_90_23623078  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_90_23626883  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_90_23812663  NA            "1/1"         "1/1"        
## HiC_scaffold_90_25939283  "0/0"         NA            "0/1"        
## HiC_scaffold_90_25985714  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_90_30751272  "0/1"         "0/1"         "0/1"        
## HiC_scaffold_90_31232025  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_90_31245699  NA            "1/1"         "0/1"        
## HiC_scaffold_90_31527975  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_90_31546172  "0/0"         "0/0"         NA           
## HiC_scaffold_90_38511996  NA            "1|1"         "0|1"        
## HiC_scaffold_90_38511999  NA            "1|1"         "0|1"        
## HiC_scaffold_90_38517279  "0/1"         "1/1"         "0/1"        
## HiC_scaffold_90_40624104  "0/0"         "0/0"         NA           
## HiC_scaffold_91_5644765   NA            "0|1"         "0/1"        
## HiC_scaffold_91_5867214   "0|1"         "0|1"         "0/0"        
## HiC_scaffold_91_5867226   "0|1"         "0|1"         "0/0"        
## HiC_scaffold_91_7704263   "1|1"         "1|1"         "0/0"        
## HiC_scaffold_91_7871360   "0/1"         "0/1"         "0/1"        
## HiC_scaffold_91_8538014   "0/1"         "1/1"         "1/1"        
## HiC_scaffold_91_13230485  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_91_28696118  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_91_28696625  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_91_42177482  NA            "0/0"         "0/0"        
## HiC_scaffold_91_46813640  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_92_23783035  "0/0"         "0|2"         "0/0"        
## HiC_scaffold_92_23783036  "0/0"         "0|2"         "0/0"        
## HiC_scaffold_92_24712793  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_92_28698258  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_92_40691582  NA            "1/1"         "0/0"        
## HiC_scaffold_92_43967712  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_92_47147572  NA            "0/0"         "0/0"        
## HiC_scaffold_92_49042714  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_92_49042715  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_92_53634002  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_92_58211868  NA            "0/1"         "1|1"        
## HiC_scaffold_92_60114155  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_92_63603483  "0/1"         "0/0"         "0|1"        
## HiC_scaffold_92_64797225  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_92_68367476  "0/0"         "0/0"         "0|2"        
## HiC_scaffold_93_1912167   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_93_2485978   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_93_3227638   "0/0"         "1/1"         "1/1"        
## HiC_scaffold_93_3227641   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_93_13971208  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_93_13987080  "0/1"         "0/0"         "0/1"        
## HiC_scaffold_93_21125468  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_93_21845293  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_93_21845310  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_93_21846342  "1/1"         "0/0"         "0|1"        
## HiC_scaffold_93_21846356  "0/0"         "0/0"         "0|1"        
## HiC_scaffold_93_22589723  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_93_22619278  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_93_22631258  "1|1"         "0/1"         "1|1"        
## HiC_scaffold_93_22631266  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_94_3110102   "1/1"         NA            "1/1"        
## HiC_scaffold_94_3205919   NA            "0/0"         "1/1"        
## HiC_scaffold_94_9023846   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_94_11572820  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_94_12368532  "0/0"         "1/1"         NA           
## HiC_scaffold_94_42179418  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_94_42179519  "1/1"         "1/1"         NA           
## HiC_scaffold_94_51646206  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_94_52781289  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_94_53790035  "1/1"         NA            "0/1"        
## HiC_scaffold_94_53792738  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_94_56768905  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_946_81276    "0/1"         "0/1"         "0/0"        
## HiC_scaffold_95_3189690   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_95_4397298   "1|1"         "0/1"         "1|1"        
## HiC_scaffold_95_9469157   "0/1"         "1|1"         "0|1"        
## HiC_scaffold_95_10641411  "0/1"         "0/0"         NA           
## HiC_scaffold_95_10949821  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_95_12993394  "0|1"         "1|1"         "0|1"        
## HiC_scaffold_95_15515793  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_95_15608785  "0|1"         "0/0"         "1|1"        
## HiC_scaffold_95_15609137  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_95_16295316  NA            "0/0"         "0/0"        
## HiC_scaffold_95_22656165  "0/0"         "0|1"         "0|1"        
## HiC_scaffold_95_25885727  NA            "0/0"         "0/0"        
## HiC_scaffold_96_10460019  "0/1"         "0/0"         NA           
## HiC_scaffold_96_27155785  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_96_37939434  "1|1"         NA            "0/1"        
## HiC_scaffold_96_51115048  NA            "1/1"         "1|1"        
## HiC_scaffold_96_51116511  "1/1"         NA            "0/0"        
## HiC_scaffold_96_51915040  "0/0"         "0/1"         "1|1"        
## HiC_scaffold_96_52681287  "0/0"         "0/1"         NA           
## HiC_scaffold_96_53276519  "0/1"         "0/0"         "0/1"        
## HiC_scaffold_97_1736926   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_97_1736994   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_97_3863543   NA            "1/1"         "0/0"        
## HiC_scaffold_97_4200445   NA            "0/1"         "0/1"        
## HiC_scaffold_97_4799162   "0|1"         "0/0"         "0/0"        
## HiC_scaffold_97_5027892   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_97_8007933   "0/0"         "1|1"         NA           
## HiC_scaffold_97_17997210  "1|1"         "1|1"         NA           
## HiC_scaffold_97_18604647  "1|1"         "0/0"         "1/1"        
## HiC_scaffold_97_20239636  "0|1"         "0/0"         "0|1"        
## HiC_scaffold_98_15154096  NA            "1|1"         "1|1"        
## HiC_scaffold_98_22342667  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_98_22634293  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_98_22634294  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_98_22721138  "1/1"         "1|1"         "0/1"        
## HiC_scaffold_98_22869378  NA            "0/0"         "0/0"        
## HiC_scaffold_98_24108405  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_98_27359592  "0/0"         "1/1"         "0|1"        
## HiC_scaffold_98_28549834  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_98_28867520  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_98_28867524  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_98_29431717  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_98_29675109  "0/1"         "0/1"         "1/1"        
## HiC_scaffold_99_1163244   "1/1"         "0/1"         "1/1"        
## HiC_scaffold_99_1451611   "0/0"         "1|1"         "0/1"        
## HiC_scaffold_99_2021961   "2|2"         "0/0"         "0/2"        
## HiC_scaffold_99_5134392   "0/0"         "0/1"         "0/1"        
## HiC_scaffold_99_5239109   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_99_6917738   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_99_11221970  "1|1"         "0|1"         "0/0"        
## HiC_scaffold_99_25982503  "0/0"         "1/1"         "1/1"        
##                           Tank_5_Crab_1 Tank_5_Crab_2 Tank_5_Crab_3
## HiC_scaffold_1_2523394    "0/0"         "1/1"         NA           
## HiC_scaffold_1_2542157    "1/1"         "0/0"         "0/1"        
## HiC_scaffold_1_2647806    "1/1"         "1/1"         "1/1"        
## HiC_scaffold_1_2970226    "0/1"         "0/0"         "0/1"        
## HiC_scaffold_1_3329447    NA            "2|2"         "0/0"        
## HiC_scaffold_1_3795100    "0/0"         "0|1"         "0/0"        
## HiC_scaffold_10_2221345   "1|1"         "1|1"         "0/0"        
## HiC_scaffold_10_2299490   "0/0"         "0/0"         "0|1"        
## HiC_scaffold_10_2565301   "1/1"         "0/0"         "0/1"        
## HiC_scaffold_10_3864355   "1/1"         "1/1"         NA           
## HiC_scaffold_10_4319900   "1|1"         NA            NA           
## HiC_scaffold_10_4319907   "1|1"         NA            NA           
## HiC_scaffold_10_5404579   "0/1"         "1/1"         "0/0"        
## HiC_scaffold_10_5843373   "1/1"         "1/1"         "0/1"        
## HiC_scaffold_100_854947   "0/0"         NA            "0/0"        
## HiC_scaffold_100_1070817  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_100_2002094  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_100_2002097  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_100_2010331  "0/0"         "0/0"         NA           
## HiC_scaffold_100_5186498  "0/1"         "1/1"         "0/1"        
## HiC_scaffold_100_5828477  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_100_6470419  "0|1"         "1/1"         NA           
## HiC_scaffold_100_6739225  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_100_6739258  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_100_6739264  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_100_6907177  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_100_8384481  "0/0"         NA            "0|0"        
## HiC_scaffold_100_8384495  "0/0"         NA            "0|0"        
## HiC_scaffold_100_9451470  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_100_10464574 "0/1"         "0/0"         "1/1"        
## HiC_scaffold_100_11934792 NA            NA            "0/0"        
## HiC_scaffold_100_11980177 "1/1"         "1|1"         "0|1"        
## HiC_scaffold_100_18465760 "0|1"         "0/0"         "0/0"        
## HiC_scaffold_100_18465762 "0|1"         "0/0"         "0/0"        
## HiC_scaffold_100_18466205 "0/2"         "0/0"         "0/0"        
## HiC_scaffold_100_31738115 "0/1"         "0/1"         "0/0"        
## HiC_scaffold_100_44227362 NA            NA            "0/0"        
## HiC_scaffold_101_12808961 "0/0"         "0/0"         NA           
## HiC_scaffold_101_13897149 "0/1"         "1/1"         "1/1"        
## HiC_scaffold_101_18337279 "0/0"         "0/0"         "0/0"        
## HiC_scaffold_101_20800167 "1/1"         "0/0"         "1/1"        
## HiC_scaffold_102_2260041  "1/1"         NA            "0/0"        
## HiC_scaffold_102_8734519  "0|1"         "0/0"         "1|1"        
## HiC_scaffold_102_10233999 "1|1"         "1|1"         "1|1"        
## HiC_scaffold_102_11446042 "0/0"         "0/0"         "1/1"        
## HiC_scaffold_102_15918694 "1|1"         "0/0"         "1/1"        
## HiC_scaffold_102_15935667 "1/1"         "0/0"         "0/1"        
## HiC_scaffold_102_17442643 NA            "1/1"         "1/1"        
## HiC_scaffold_102_17608969 "1/1"         "0/0"         NA           
## HiC_scaffold_102_20180185 "0/0"         "0/0"         "1/1"        
## HiC_scaffold_102_24788723 "0/0"         "0/0"         "0/1"        
## HiC_scaffold_102_25423729 "0/0"         "1|1"         "1|1"        
## HiC_scaffold_102_39755142 NA            "1/1"         "1/1"        
## HiC_scaffold_102_52046978 "0/0"         "0/0"         "0/0"        
## HiC_scaffold_1027_34152   "0/1"         "1|1"         "1/1"        
## HiC_scaffold_103_601715   NA            "0/0"         "1/1"        
## HiC_scaffold_103_2891384  NA            "0/0"         "0/0"        
## HiC_scaffold_103_8191270  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_103_9521272  NA            "0/0"         "0/0"        
## HiC_scaffold_103_14768909 "1|1"         "0/0"         "0/0"        
## HiC_scaffold_103_19312119 "0/0"         "1|1"         "0/0"        
## HiC_scaffold_103_21284866 "0/0"         NA            "0/0"        
## HiC_scaffold_103_31428453 "1|1"         NA            "0/0"        
## HiC_scaffold_103_42567396 "0/1"         "0/1"         "0/1"        
## HiC_scaffold_103_45921571 "0/0"         "0|1"         "1|1"        
## HiC_scaffold_103_45921573 "0/0"         "0|1"         "1|1"        
## HiC_scaffold_103_49592022 "0/0"         "0/1"         "0/0"        
## HiC_scaffold_103_49620132 "0|1"         "1|1"         "0/0"        
## HiC_scaffold_103_50440915 NA            "0/0"         "0/0"        
## HiC_scaffold_103_51944137 "1/1"         "1/1"         "1/1"        
## HiC_scaffold_103_54308582 "0/0"         "0/0"         "0/0"        
## HiC_scaffold_103_54424067 NA            "1|1"         "0/0"        
## HiC_scaffold_103_56932900 "1/1"         "1/1"         "1/1"        
## HiC_scaffold_103_57470264 "1|1"         "1|1"         NA           
## HiC_scaffold_104_7771140  NA            "1/1"         "1/1"        
## HiC_scaffold_104_9103028  "1/1"         "0/1"         "0/1"        
## HiC_scaffold_104_10633168 NA            "0/0"         "1/1"        
## HiC_scaffold_104_18917031 "0/0"         "0/0"         "1/1"        
## HiC_scaffold_104_20851902 "0/1"         "0/0"         NA           
## HiC_scaffold_104_24451803 "1/1"         NA            "0/1"        
## HiC_scaffold_104_28597688 "0/1"         "0|1"         NA           
## HiC_scaffold_104_40927999 NA            "0/0"         "0/1"        
## HiC_scaffold_104_46490074 "0/0"         "0/1"         "0/0"        
## HiC_scaffold_104_49759053 "0/0"         "1/1"         "0/0"        
## HiC_scaffold_104_57267896 "0/0"         "0/1"         "0/0"        
## HiC_scaffold_104_62570010 "0/0"         "0/0"         "0/0"        
## HiC_scaffold_11_32804173  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_11_34516508  "1/1"         "1/1"         NA           
## HiC_scaffold_11_35332996  "1/1"         "0/1"         NA           
## HiC_scaffold_11_35904027  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_11_41539793  "1|1"         "0/1"         NA           
## HiC_scaffold_11_41604080  "1|1"         "0/0"         "1/1"        
## HiC_scaffold_11_42855323  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_11_45339409  "0/0"         NA            NA           
## HiC_scaffold_11_45339410  "0/0"         NA            "0/0"        
## HiC_scaffold_11_47544035  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_12_7515164   "0/0"         "0/1"         NA           
## HiC_scaffold_12_12640100  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_12_12826705  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_12_14899285  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_12_17465672  "0/0"         "0/0"         NA           
## HiC_scaffold_12_22770710  "0/0"         "0/0"         NA           
## HiC_scaffold_12_32318964  "0|1"         "1|1"         "1|1"        
## HiC_scaffold_12_35136373  "0/1"         "0|1"         "1|1"        
## HiC_scaffold_12_40687860  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_13_2938168   "0/0"         "1/1"         "1/1"        
## HiC_scaffold_13_20350974  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_13_27759554  "0/1"         NA            "1/1"        
## HiC_scaffold_13_28146828  "2|2"         "0/0"         NA           
## HiC_scaffold_13_28146830  "2|2"         "0/0"         NA           
## HiC_scaffold_13_28925343  "0/1"         "1/1"         "2/2"        
## HiC_scaffold_13_31913129  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_13_32078924  "0/0"         "0/0"         NA           
## HiC_scaffold_13_33864805  NA            "0/0"         "1/1"        
## HiC_scaffold_13_34892542  "1/1"         "0/1"         NA           
## HiC_scaffold_13_34893103  "0/0"         "1|1"         "0|1"        
## HiC_scaffold_13_35762551  NA            "0|1"         "1|1"        
## HiC_scaffold_13_35881745  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_13_35881749  "0/1"         NA            "0/0"        
## HiC_scaffold_14_3843214   "0/0"         "0/0"         "0/1"        
## HiC_scaffold_14_25884262  "0/0"         NA            "0/0"        
## HiC_scaffold_14_27050415  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_14_27118495  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_14_27277222  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_14_29215814  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_15_2460398   "1|1"         NA            "1|1"        
## HiC_scaffold_15_2462980   "0/0"         "1|1"         NA           
## HiC_scaffold_15_2467289   NA            "0/0"         "1/1"        
## HiC_scaffold_15_5669141   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_15_13700694  "0/1"         "0/2"         NA           
## HiC_scaffold_15_17825275  "0|1"         "0|1"         "0|1"        
## HiC_scaffold_15_19938475  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_15_23865956  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_15_28837774  "0/0"         "1/1"         "1|1"        
## HiC_scaffold_15_28837810  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_15_28837823  NA            "0|1"         "0/0"        
## HiC_scaffold_15_28837835  NA            "0|1"         "0/0"        
## HiC_scaffold_15_28837841  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_15_28837854  "1/1"         "1|1"         NA           
## HiC_scaffold_15_34827832  "1/1"         NA            "0/0"        
## HiC_scaffold_15_34893807  "0/0"         NA            "0/0"        
## HiC_scaffold_15_35327348  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_15_42161112  "0|0"         NA            "0/0"        
## HiC_scaffold_15_42164926  "0/0"         NA            "0|1"        
## HiC_scaffold_15_42164946  "0/0"         NA            "0/1"        
## HiC_scaffold_15_46289572  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_15_50591576  "1|1"         "1|1"         NA           
## HiC_scaffold_15_50759128  "0/1"         "1|1"         "0/0"        
## HiC_scaffold_15_51188336  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_15_54726640  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_15_54788235  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_15_56162375  "0/0"         "0/0"         "0|1"        
## HiC_scaffold_15_61091106  "0/1"         "1/1"         NA           
## HiC_scaffold_15_61464359  "1/1"         "0/1"         "1|1"        
## HiC_scaffold_15_61510386  NA            "1/1"         "1/1"        
## HiC_scaffold_15_62309788  NA            "0/0"         "0|1"        
## HiC_scaffold_15_62309793  NA            "0/0"         "0|1"        
## HiC_scaffold_15_62771254  "0/0"         NA            "1/1"        
## HiC_scaffold_15_63493927  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_15_64997502  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_15_65007865  "0|1"         "1|1"         "1/1"        
## HiC_scaffold_15_65007879  "0/0"         NA            NA           
## HiC_scaffold_15_66038529  "1/1"         "0/1"         "0/0"        
## HiC_scaffold_15_69811281  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_16_14205925  NA            "0/1"         "0/0"        
## HiC_scaffold_16_30404047  "0|1"         "1|1"         "0/0"        
## HiC_scaffold_16_57413288  "1|1"         NA            "1|1"        
## HiC_scaffold_16_63687578  "0/0"         "0/0"         "0|1"        
## HiC_scaffold_16_74138787  "0/1"         NA            "1/1"        
## HiC_scaffold_16_74140106  "0/0"         "1/1"         NA           
## HiC_scaffold_16_76276015  "1/1"         NA            "1/1"        
## HiC_scaffold_17_11390873  "0/1"         "1|1"         NA           
## HiC_scaffold_17_12551128  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_17_16615612  "1/1"         NA            "0/0"        
## HiC_scaffold_17_18838093  NA            "0/0"         NA           
## HiC_scaffold_17_22801072  "1/1"         "1/1"         NA           
## HiC_scaffold_17_23788599  "0/1"         "0|1"         "1/1"        
## HiC_scaffold_17_29383895  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_17_29618771  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_17_29976139  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_17_31107213  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_17_32493792  "1/1"         NA            "0/1"        
## HiC_scaffold_17_33732050  "0/0"         "1/1"         NA           
## HiC_scaffold_17_33801314  "0/0"         "0|1"         "0/1"        
## HiC_scaffold_17_34081889  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_18_227565    "0/0"         "0/0"         NA           
## HiC_scaffold_18_1213486   "1/1"         NA            "1/1"        
## HiC_scaffold_18_1701312   "0/0"         "0/0"         "0|1"        
## HiC_scaffold_18_3506437   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_18_6304978   "0/0"         "1/1"         "1/1"        
## HiC_scaffold_18_6351493   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_18_6358009   "1/1"         "0/0"         NA           
## HiC_scaffold_18_10770701  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_18_13342858  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_18_20045832  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_18_22682683  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_18_26337790  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_18_48929148  "1/1"         "1|1"         "0/0"        
## HiC_scaffold_18_51490626  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_18_53723137  "0/0"         "0/0"         NA           
## HiC_scaffold_18_54496637  "0/0"         "0|1"         "0/0"        
## HiC_scaffold_18_55294388  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_19_279726    NA            "1/1"         "0/1"        
## HiC_scaffold_19_6426572   NA            "1/1"         "0/0"        
## HiC_scaffold_19_6575887   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_19_7755254   "0/1"         "0/1"         "0/0"        
## HiC_scaffold_19_9301421   "0/1"         "0|1"         "0|1"        
## HiC_scaffold_19_9357388   "0/0"         "1|1"         "1|1"        
## HiC_scaffold_19_9778841   "0/1"         "0/0"         "1/1"        
## HiC_scaffold_19_10928976  "0/0"         "0|1"         NA           
## HiC_scaffold_19_10928980  "0/0"         "0|1"         NA           
## HiC_scaffold_19_10928982  "1|1"         "0|1"         "0/0"        
## HiC_scaffold_19_11106347  "1|1"         "0/0"         "0/1"        
## HiC_scaffold_19_11590139  "1/1"         "0/1"         "0/1"        
## HiC_scaffold_19_11665300  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_19_14793640  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_19_22112743  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_19_25473671  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_19_25473692  "0/1"         "0/1"         "1/1"        
## HiC_scaffold_19_28110829  NA            "0/0"         "0/1"        
## HiC_scaffold_19_28465002  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_19_28465167  "0|1"         "1|1"         NA           
## HiC_scaffold_19_30106869  "0/0"         "0/0"         "0|1"        
## HiC_scaffold_19_52538858  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_19_52596196  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_19_53482993  "1/1"         "0/1"         "0/0"        
## HiC_scaffold_19_54312637  "1/1"         "1/1"         "1|1"        
## HiC_scaffold_19_59345841  "1|1"         "0/0"         "0|1"        
## HiC_scaffold_2_3296144    "1|1"         NA            NA           
## HiC_scaffold_2_3418589    "0/0"         NA            "1/1"        
## HiC_scaffold_2_3864060    "1|1"         NA            "1/1"        
## HiC_scaffold_2_4104755    "0|2"         NA            "0|2"        
## HiC_scaffold_2_4104758    "0|2"         NA            "0|2"        
## HiC_scaffold_2_8316721    "0|1"         "0/0"         "0/0"        
## HiC_scaffold_2_9098999    "0/1"         "0/0"         "0/1"        
## HiC_scaffold_2_10457537   "0/0"         "0/0"         NA           
## HiC_scaffold_2_19048125   "1/1"         "0/0"         "1/1"        
## HiC_scaffold_2_21748201   "1/1"         "0/0"         NA           
## HiC_scaffold_2_33187764   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_2_33187770   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_2_33187959   "0/1"         "0/0"         "1/1"        
## HiC_scaffold_2_41603929   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_2_52233191   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_2_52400748   "0/0"         "1/1"         "0/1"        
## HiC_scaffold_2_52403793   "1|1"         "1|1"         "0/0"        
## HiC_scaffold_2_52799130   "0/1"         "0/1"         "0/1"        
## HiC_scaffold_20_10332897  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_20_17198418  NA            "1|1"         "1|1"        
## HiC_scaffold_20_17915398  "1|1"         "1|1"         NA           
## HiC_scaffold_20_18872955  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_20_19055301  "1/1"         "0/0"         NA           
## HiC_scaffold_20_19150094  "1/1"         NA            "1/1"        
## HiC_scaffold_20_20651022  "1|1"         NA            NA           
## HiC_scaffold_20_22651296  "1/1"         NA            "1/1"        
## HiC_scaffold_21_2009156   "0/1"         NA            "0/0"        
## HiC_scaffold_21_2435648   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_21_7164210   "0|1"         "0|1"         "1|1"        
## HiC_scaffold_21_9786512   "0/0"         "0/0"         NA           
## HiC_scaffold_21_12424922  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_21_17966833  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_21_19025429  "0/1"         "0/0"         "0/1"        
## HiC_scaffold_21_20058318  NA            "0/1"         NA           
## HiC_scaffold_21_20562855  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_21_20661860  NA            "1|1"         "1/1"        
## HiC_scaffold_21_20895395  NA            "0/0"         NA           
## HiC_scaffold_21_21158811  "1|1"         "2|2"         "1|1"        
## HiC_scaffold_21_22250857  "0/1"         "0/1"         "0/1"        
## HiC_scaffold_21_22250866  "0|1"         "0/0"         "0/0"        
## HiC_scaffold_21_22257737  NA            "1/1"         "0/0"        
## HiC_scaffold_21_22644667  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_21_22644673  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_21_22666888  "1/1"         "0/1"         "0/0"        
## HiC_scaffold_21_23905416  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_21_23981651  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_21_24287068  NA            "1/1"         "0/0"        
## HiC_scaffold_21_30798434  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_21_35006232  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_21_35779294  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_22_124910    "0/1"         "0/0"         "1/1"        
## HiC_scaffold_22_751023    "1|1"         "1/1"         "1/1"        
## HiC_scaffold_22_1042644   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_22_1044708   "0/1"         NA            "1/1"        
## HiC_scaffold_22_2174911   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_22_3431122   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_22_3446787   "0|1"         "0|1"         "1|1"        
## HiC_scaffold_22_3451756   "0/0"         NA            "1|1"        
## HiC_scaffold_22_3720435   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_22_4065466   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_22_4739889   "0/0"         NA            "0/0"        
## HiC_scaffold_22_4918263   NA            "0|1"         "0|1"        
## HiC_scaffold_22_5750008   "0/1"         "0/1"         "1/1"        
## HiC_scaffold_22_5769942   "0|1"         "1|1"         "0/0"        
## HiC_scaffold_22_28264522  "1|1"         NA            "1|1"        
## HiC_scaffold_22_28265115  NA            "0/0"         "1/1"        
## HiC_scaffold_22_29205851  "1/1"         "0/1"         "0/1"        
## HiC_scaffold_22_29822340  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_22_30797357  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_22_32042610  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_23_11215327  "0/0"         NA            "0/0"        
## HiC_scaffold_23_27081333  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_23_28672255  NA            NA            "0/0"        
## HiC_scaffold_23_29218828  NA            "1/1"         "0/0"        
## HiC_scaffold_23_32528768  "0/1"         "0/0"         "1|1"        
## HiC_scaffold_23_32669383  "0/1"         "1/1"         "0|1"        
## HiC_scaffold_23_33199663  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_23_33245843  "1/1"         NA            "1/1"        
## HiC_scaffold_23_40824545  NA            "1|1"         "0|1"        
## HiC_scaffold_23_41504669  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_24_16622654  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_24_16622681  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_24_19851560  "1/1"         "1|1"         "0/1"        
## HiC_scaffold_24_20590563  NA            "1/1"         "0/0"        
## HiC_scaffold_24_27745754  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_24_28763699  "1|1"         "1|1"         "0/1"        
## HiC_scaffold_24_28763703  "0/1"         "1|1"         "0/1"        
## HiC_scaffold_25_4135969   "0/0"         "0/1"         "1/1"        
## HiC_scaffold_25_4201677   "0/0"         "0/1"         "1/1"        
## HiC_scaffold_25_5872831   "1/1"         "0|1"         NA           
## HiC_scaffold_25_6879627   "1/1"         "1/1"         NA           
## HiC_scaffold_25_8172813   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_25_9969507   "0/0"         "1|1"         "0/1"        
## HiC_scaffold_25_10691336  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_25_21286462  "1|1"         "1/1"         "0/1"        
## HiC_scaffold_26_4086662   "1|1"         "0/1"         "0/0"        
## HiC_scaffold_26_7539671   "0/0"         "0/0"         "0|1"        
## HiC_scaffold_26_8348511   NA            NA            "1/1"        
## HiC_scaffold_26_9043748   "1|1"         NA            "1|1"        
## HiC_scaffold_26_9045655   "1|1"         NA            NA           
## HiC_scaffold_26_11253181  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_26_17828344  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_26_17932520  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_26_17941459  NA            "0/0"         NA           
## HiC_scaffold_26_17960877  "1/1"         "1/1"         "0|1"        
## HiC_scaffold_26_18284041  NA            "0/0"         "0/1"        
## HiC_scaffold_26_18288701  NA            "1|1"         "1|1"        
## HiC_scaffold_26_18294422  "1|1"         "0|1"         NA           
## HiC_scaffold_26_21307365  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_26_22159924  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_26_22161535  "1/1"         "0/0"         NA           
## HiC_scaffold_26_24794176  "1/1"         "1/1"         NA           
## HiC_scaffold_26_28538113  "0|1"         NA            "1|1"        
## HiC_scaffold_26_29031357  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_26_29163462  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_26_42631018  "1/1"         NA            "0/0"        
## HiC_scaffold_26_42634814  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_26_43483190  "1/1"         "0/1"         "0/0"        
## HiC_scaffold_26_49955889  "1/1"         "1/1"         NA           
## HiC_scaffold_26_58342510  NA            "0/0"         "1|1"        
## HiC_scaffold_27_1496120   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_27_1947057   "0/1"         "1/1"         "0|1"        
## HiC_scaffold_27_2359058   NA            "0/1"         "0/0"        
## HiC_scaffold_27_2699645   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_27_4425475   "1|1"         "0/0"         "0|1"        
## HiC_scaffold_27_7539469   "0/2"         "0/0"         "0/0"        
## HiC_scaffold_27_7777122   "0/1"         "1|1"         "0/0"        
## HiC_scaffold_27_16657070  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_27_24539255  "1|1"         "0/0"         "0|1"        
## HiC_scaffold_27_34642359  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_27_34647277  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_27_35380535  "1/1"         NA            "1/1"        
## HiC_scaffold_27_35383230  NA            "0/0"         "0/0"        
## HiC_scaffold_28_21261390  NA            "0/0"         "1|1"        
## HiC_scaffold_28_24490442  "0/0"         "1/1"         "1|1"        
## HiC_scaffold_28_25601927  NA            "1/1"         "1/1"        
## HiC_scaffold_28_31793968  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_28_32126687  "2|2"         "0/0"         "0/0"        
## HiC_scaffold_28_34779518  "1/1"         NA            "0/0"        
## HiC_scaffold_28_36042491  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_28_36692361  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_28_38672993  "1|1"         "0/1"         NA           
## HiC_scaffold_28_39640526  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_28_40169242  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_28_41059640  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_28_42514830  "1|1"         "1|1"         "1/1"        
## HiC_scaffold_28_42601570  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_28_42601585  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_28_43018803  NA            "0/0"         "0/1"        
## HiC_scaffold_28_43036165  NA            "1/1"         "0/0"        
## HiC_scaffold_29_344317    "0/0"         "0|1"         "0/0"        
## HiC_scaffold_29_3811176   "1/1"         "1/1"         "0/1"        
## HiC_scaffold_29_6073993   "1|1"         "1/1"         "0|1"        
## HiC_scaffold_29_6415222   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_29_8224424   "1/1"         "0/0"         "1/1"        
## HiC_scaffold_29_11153624  "0/0"         NA            NA           
## HiC_scaffold_29_11153712  "0/0"         NA            "0/1"        
## HiC_scaffold_29_11167966  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_29_11491468  "0/1"         NA            "0/0"        
## HiC_scaffold_29_12103558  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_29_14279322  "0|1"         "1/1"         "0/1"        
## HiC_scaffold_29_14913907  "0/0"         NA            "0/0"        
## HiC_scaffold_29_16378276  "0/1"         "1/1"         NA           
## HiC_scaffold_29_20635937  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_29_20636787  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_29_22560215  "1/1"         "0/1"         "0/0"        
## HiC_scaffold_29_22561144  "1/1"         NA            "1/1"        
## HiC_scaffold_29_24017849  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_29_31603590  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_3_21670751   "1/1"         NA            "0/0"        
## HiC_scaffold_3_24747014   "0/0"         "0/0"         "0/1"        
## HiC_scaffold_3_27861792   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_3_28057869   NA            "0/0"         "0/0"        
## HiC_scaffold_3_28441436   "0/1"         "1/1"         "0/0"        
## HiC_scaffold_3_28694380   "1/1"         "1|1"         "0/0"        
## HiC_scaffold_3_31361023   "0/1"         "0/1"         "1/1"        
## HiC_scaffold_3_31960572   "0/0"         "1|1"         "0/0"        
## HiC_scaffold_3_32157169   "0/0"         NA            "0/0"        
## HiC_scaffold_3_32159152   "1/1"         "1|1"         "0/1"        
## HiC_scaffold_3_34124237   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_30_14199802  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_30_16052331  NA            "0/0"         "1/1"        
## HiC_scaffold_30_19914075  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_30_20688783  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_30_21446076  "0/0"         "0/0"         "2/2"        
## HiC_scaffold_30_21598563  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_30_22155728  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_31_687411    "0/0"         "0/0"         "0/1"        
## HiC_scaffold_31_3224722   "0/1"         "0/0"         "1/1"        
## HiC_scaffold_31_3574854   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_31_5899551   "1/1"         NA            "1/1"        
## HiC_scaffold_31_5911491   "0/1"         "1|1"         "0/0"        
## HiC_scaffold_31_6297680   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_31_12394016  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_31_12394040  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_31_18612650  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_32_4446859   NA            "0/0"         "0/0"        
## HiC_scaffold_32_5274796   "1/1"         "0/0"         "1/1"        
## HiC_scaffold_32_5275108   "0/1"         "1/1"         "0/1"        
## HiC_scaffold_32_5282358   "1/1"         NA            "0|1"        
## HiC_scaffold_32_5450203   "1|1"         "1|1"         "0/1"        
## HiC_scaffold_32_44200178  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_33_638523    "0/0"         "1/1"         "0/0"        
## HiC_scaffold_33_44489563  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_33_44489988  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_33_47080180  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_33_47495907  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_33_51865876  "0/0"         NA            NA           
## HiC_scaffold_34_1096982   "0/1"         "0/0"         "1/1"        
## HiC_scaffold_34_6091943   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_34_6100160   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_34_24368584  "1/1"         "0/0"         NA           
## HiC_scaffold_35_3233120   "0/1"         "0/1"         "0/1"        
## HiC_scaffold_35_3253574   "1/1"         NA            NA           
## HiC_scaffold_35_5512296   "0/1"         "1/1"         "0/1"        
## HiC_scaffold_35_15114788  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_35_21214090  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_35_21462564  NA            NA            "1/1"        
## HiC_scaffold_35_22746783  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_35_22747085  "0/0"         NA            "0/0"        
## HiC_scaffold_35_23059580  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_35_23158882  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_35_23261143  NA            "1/1"         "1/1"        
## HiC_scaffold_35_24403602  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_35_24403620  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_35_24993986  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_35_24993998  "0|1"         "0/1"         "0/0"        
## HiC_scaffold_36_1538038   "1/1"         "1/1"         "0/0"        
## HiC_scaffold_36_2464728   "1/1"         "0|1"         NA           
## HiC_scaffold_36_5489050   "1/1"         "0/1"         "0/0"        
## HiC_scaffold_36_9673981   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_36_9674127   "1/1"         "0/0"         "1/1"        
## HiC_scaffold_36_9674756   "1/1"         "0/0"         "1/1"        
## HiC_scaffold_36_9676329   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_36_12304516  "1/1"         "0/0"         NA           
## HiC_scaffold_36_12515555  NA            "0|1"         "0/0"        
## HiC_scaffold_36_13092647  NA            "0/0"         "0/0"        
## HiC_scaffold_36_13766994  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_36_14567741  "0/1"         "0/1"         "0/0"        
## HiC_scaffold_36_15530578  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_37_679894    "0/1"         "1/1"         NA           
## HiC_scaffold_37_916693    "0/0"         "0/0"         "0/0"        
## HiC_scaffold_37_928146    "0/0"         "0/0"         "1/1"        
## HiC_scaffold_37_1256768   "0/0"         "1|1"         NA           
## HiC_scaffold_37_1270034   "1/1"         "1/1"         "0/1"        
## HiC_scaffold_37_1770997   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_37_1798298   "0/0"         "1/1"         "0/1"        
## HiC_scaffold_37_2010342   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_37_2141526   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_37_3952190   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_37_3952215   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_37_9915037   "0/0"         "0/1"         "0/1"        
## HiC_scaffold_38_5383430   NA            "0/1"         NA           
## HiC_scaffold_38_5668363   "0/0"         NA            "0/0"        
## HiC_scaffold_38_5879849   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_38_5880155   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_38_10612790  NA            "0/1"         "1/1"        
## HiC_scaffold_38_11940240  "0|1"         "0/0"         "0|1"        
## HiC_scaffold_38_12878826  "1/1"         "0/0"         "0|1"        
## HiC_scaffold_38_12959698  "0/0"         "0/1"         NA           
## HiC_scaffold_38_13087368  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_38_13480648  "0|1"         "0/0"         "0|1"        
## HiC_scaffold_38_13965243  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_38_14089955  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_38_14408072  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_38_14931216  NA            "0/1"         "1|1"        
## HiC_scaffold_38_14978356  "0|1"         "1|1"         "0/0"        
## HiC_scaffold_38_14978367  "0|1"         "1|1"         "0/0"        
## HiC_scaffold_38_15292863  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_38_15306135  "1|1"         "0/0"         "0|1"        
## HiC_scaffold_38_16077506  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_38_16138965  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_38_16226040  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_39_1393769   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_39_2014970   "0/1"         NA            "0/0"        
## HiC_scaffold_39_2014982   "0|1"         NA            "0/0"        
## HiC_scaffold_39_2014985   "0|1"         "0/1"         "0/0"        
## HiC_scaffold_39_2426443   "0/1"         NA            "0/0"        
## HiC_scaffold_39_2485330   "0/0"         NA            "1/1"        
## HiC_scaffold_39_3350506   "0/0"         "1|1"         NA           
## HiC_scaffold_39_5897388   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_39_17631133  "0/1"         "1/1"         "0/1"        
## HiC_scaffold_4_12107187   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_4_18241670   "0/0"         "1|1"         "1|1"        
## HiC_scaffold_4_18241723   "0/0"         "1|1"         "1|1"        
## HiC_scaffold_4_22418566   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_4_27899990   "0/1"         "0/0"         NA           
## HiC_scaffold_4_35575118   "1/1"         "0|1"         "0|1"        
## HiC_scaffold_4_38000967   "0/1"         "1/1"         "1/1"        
## HiC_scaffold_4_50654021   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_40_2243415   NA            "0/0"         "0/0"        
## HiC_scaffold_40_3000572   "1/1"         "1/1"         "0/0"        
## HiC_scaffold_40_3014177   "0|1"         "1/1"         "1|1"        
## HiC_scaffold_40_3027900   "0/0"         NA            NA           
## HiC_scaffold_40_3143834   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_40_3843942   "0/0"         "2|2"         "0|1"        
## HiC_scaffold_40_3847620   "0/0"         "1|1"         "1|1"        
## HiC_scaffold_40_3891007   "1/1"         "0/1"         "0/0"        
## HiC_scaffold_40_3920667   "2/2"         "2/2"         "1|1"        
## HiC_scaffold_40_4177963   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_40_4819107   "0/0"         "1/1"         "0/1"        
## HiC_scaffold_40_4819834   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_40_5788271   NA            "0/1"         "1|1"        
## HiC_scaffold_40_5965269   "0/0"         "1|1"         "0/0"        
## HiC_scaffold_40_6204154   "1/1"         "0/0"         "1/1"        
## HiC_scaffold_40_8387917   "0/0"         "0/1"         NA           
## HiC_scaffold_41_3235384   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_41_3583000   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_41_5334504   "1/1"         NA            NA           
## HiC_scaffold_41_5387631   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_41_6423426   "0/0"         "1/1"         "1/1"        
## HiC_scaffold_41_14359947  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_41_24007593  "0/0"         "0/0"         NA           
## HiC_scaffold_41_26225447  "1/1"         "1|1"         "0/0"        
## HiC_scaffold_41_28626484  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_41_28660620  "0|1"         "1|1"         "0/0"        
## HiC_scaffold_41_31007688  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_42_1131084   "1/1"         NA            "0/0"        
## HiC_scaffold_42_1818523   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_42_2165002   "0/0"         "0/1"         "0/0"        
## HiC_scaffold_42_2711332   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_42_6142699   "0/0"         "1/1"         "0/1"        
## HiC_scaffold_42_6744976   "1/1"         "0/1"         "0/0"        
## HiC_scaffold_42_8066919   "1|1"         "1/1"         "0|1"        
## HiC_scaffold_42_8068292   "0/0"         "0/0"         "0/1"        
## HiC_scaffold_42_12487888  "0/0"         "0/0"         NA           
## HiC_scaffold_42_41366687  "0/1"         NA            NA           
## HiC_scaffold_42_47313337  "2|2"         "0/0"         NA           
## HiC_scaffold_42_47313338  "2|2"         "0/0"         "0/0"        
## HiC_scaffold_42_50784971  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_42_50784977  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_42_50784981  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_42_51916989  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_43_3842003   "1/1"         "1/1"         NA           
## HiC_scaffold_43_14140861  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_43_15053605  "1/1"         "0|1"         "1/1"        
## HiC_scaffold_43_17289945  "0/0"         "1|1"         "0/1"        
## HiC_scaffold_43_29967704  "1/1"         NA            NA           
## HiC_scaffold_43_35745831  "0/0"         "1|1"         "0|1"        
## HiC_scaffold_43_37627949  "1|1"         "0|1"         "1|1"        
## HiC_scaffold_43_37628126  "1/1"         "1/1"         NA           
## HiC_scaffold_43_44017118  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_43_55124138  "0/1"         "1|1"         NA           
## HiC_scaffold_43_60107326  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_43_61359386  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_43_61702593  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_43_61702606  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_43_61702721  "1|1"         "0/1"         "1|1"        
## HiC_scaffold_43_61702738  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_43_62511703  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_43_64069457  NA            "0/0"         NA           
## HiC_scaffold_43_64577269  "1/1"         "0/1"         "0/0"        
## HiC_scaffold_44_1920144   "1|1"         "0/0"         "1|1"        
## HiC_scaffold_44_2148035   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_44_2568167   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_45_4180070   "0/0"         "0/1"         NA           
## HiC_scaffold_45_4797754   "0/0"         "0/0"         "1/2"        
## HiC_scaffold_45_5911123   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_45_6958990   "1/1"         "0/0"         "0/1"        
## HiC_scaffold_45_8516216   "1|1"         "0/0"         "0/1"        
## HiC_scaffold_45_10191213  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_45_12005885  "1/1"         "0/1"         "0/0"        
## HiC_scaffold_45_12006766  "0/0"         "0|1"         "0/0"        
## HiC_scaffold_45_24736172  NA            "0/1"         "0/0"        
## HiC_scaffold_45_24739830  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_46_9691567   "0|1"         "0|1"         NA           
## HiC_scaffold_46_17380257  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_46_18387147  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_46_37092355  "0|1"         NA            "1|1"        
## HiC_scaffold_46_39183624  NA            "0/0"         "1/1"        
## HiC_scaffold_46_39390547  "1|1"         NA            "1/1"        
## HiC_scaffold_46_42964941  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_46_42986653  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_46_52074364  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_46_54255667  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_47_3750532   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_47_3751345   "1/1"         NA            "0/0"        
## HiC_scaffold_47_15400639  NA            "1|1"         "1|1"        
## HiC_scaffold_47_24072414  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_47_25273825  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_48_8752752   "0|2"         "0/0"         "0/0"        
## HiC_scaffold_48_10765920  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_48_16077918  "1|1"         "0/0"         "0|1"        
## HiC_scaffold_48_16077940  "1|1"         "1/1"         "0|1"        
## HiC_scaffold_48_16411609  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_48_19972580  "0/1"         "1/1"         "0/1"        
## HiC_scaffold_48_23493079  "0|1"         "0/0"         "1|1"        
## HiC_scaffold_48_23597210  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_48_24478493  "0/0"         NA            "1/1"        
## HiC_scaffold_48_24881148  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_48_25865723  "1/1"         NA            "1/1"        
## HiC_scaffold_48_25984068  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_48_25989079  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_48_30601375  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_48_31662115  "0/1"         NA            "1/1"        
## HiC_scaffold_48_41971562  "0/0"         NA            "0/1"        
## HiC_scaffold_49_3392801   NA            "1|1"         "0/0"        
## HiC_scaffold_49_6101692   "1/1"         NA            "0/0"        
## HiC_scaffold_49_7996315   "0/0"         "0/1"         "1/1"        
## HiC_scaffold_49_9470474   "1/1"         "0/0"         "0/1"        
## HiC_scaffold_49_9886007   NA            "0/1"         NA           
## HiC_scaffold_49_12592113  "1/1"         "0/1"         "0/0"        
## HiC_scaffold_49_12741575  "1/1"         NA            "0/0"        
## HiC_scaffold_49_15135019  NA            "1/1"         "1|1"        
## HiC_scaffold_49_25906219  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_49_26614199  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_49_26655554  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_49_37568341  "0/1"         "1/1"         "1|1"        
## HiC_scaffold_49_37568353  "0/1"         "1/1"         "1|1"        
## HiC_scaffold_49_40002255  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_49_40003229  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_49_42966376  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_5_801252     "0/0"         NA            "1/1"        
## HiC_scaffold_5_1446603    "0/0"         "1|1"         "0|1"        
## HiC_scaffold_5_1446611    "0/0"         "1|1"         "0|1"        
## HiC_scaffold_5_1530759    "1|1"         "0/0"         "0|1"        
## HiC_scaffold_5_1539275    "2|2"         "0/0"         "0/0"        
## HiC_scaffold_5_1789576    "0/0"         "1|1"         "0/0"        
## HiC_scaffold_5_1808197    NA            "1/1"         "1/1"        
## HiC_scaffold_5_1808204    "0/0"         "0/0"         "0/0"        
## HiC_scaffold_5_1943895    "1|1"         "1|1"         "0/0"        
## HiC_scaffold_5_1944469    "0|1"         "1/1"         "0/1"        
## HiC_scaffold_5_2857283    "1/1"         NA            NA           
## HiC_scaffold_5_4061378    "0/0"         "0/0"         "1/1"        
## HiC_scaffold_5_4340647    "1|1"         "1|1"         "0/1"        
## HiC_scaffold_5_4435246    "0/1"         "0/1"         "1/1"        
## HiC_scaffold_5_8868783    "1/1"         "0/0"         "0/0"        
## HiC_scaffold_50_4315969   "0/1"         NA            "0/0"        
## HiC_scaffold_50_11652296  "1|1"         "1/1"         "1/1"        
## HiC_scaffold_50_11657309  "1/1"         NA            "1/1"        
## HiC_scaffold_50_15521027  "0/1"         "0/1"         "1/1"        
## HiC_scaffold_50_21050962  "0/1"         "1/1"         NA           
## HiC_scaffold_50_23686202  "0/1"         NA            "1|1"        
## HiC_scaffold_50_27393462  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_50_42586883  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_50_45087211  "1/1"         "0/1"         NA           
## HiC_scaffold_50_49796550  "1/1"         NA            NA           
## HiC_scaffold_50_54383367  "1|1"         "0/1"         "0/0"        
## HiC_scaffold_50_63318678  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_51_3521000   "0/0"         "1/1"         NA           
## HiC_scaffold_51_4681905   NA            "1/1"         "1/1"        
## HiC_scaffold_51_6305599   "2|2"         "2|2"         "0/0"        
## HiC_scaffold_51_8530818   "0/0"         NA            "1/1"        
## HiC_scaffold_51_11653312  "0/0"         NA            "0/1"        
## HiC_scaffold_51_13138547  NA            "1/1"         NA           
## HiC_scaffold_51_14457091  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_51_15512668  "1/1"         "0/1"         "1|1"        
## HiC_scaffold_51_17816346  "0/0"         "1/1"         "0|1"        
## HiC_scaffold_51_19997934  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_51_19997936  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_51_20870773  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_51_26660104  "0/0"         NA            NA           
## HiC_scaffold_51_40727521  NA            "1|1"         "0/0"        
## HiC_scaffold_51_40892841  "0/0"         NA            "0/1"        
## HiC_scaffold_51_41717519  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_51_42547638  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_52_3335804   NA            "0/0"         "0/1"        
## HiC_scaffold_52_4149130   "0/1"         NA            "1/1"        
## HiC_scaffold_52_6893679   "1/1"         "1|1"         NA           
## HiC_scaffold_52_13155416  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_52_13155437  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_52_13155442  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_52_14885688  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_52_14895078  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_52_15141791  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_52_15743051  "0/0"         "1|1"         "0/1"        
## HiC_scaffold_52_15760201  "1/1"         NA            "0/1"        
## HiC_scaffold_52_15834589  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_52_15841769  "0/0"         NA            "0/1"        
## HiC_scaffold_52_15862421  "1|1"         NA            "0|1"        
## HiC_scaffold_52_15970970  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_52_16275237  "0/0"         NA            "0/0"        
## HiC_scaffold_52_16275240  "1|1"         NA            "1|1"        
## HiC_scaffold_52_16275290  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_52_16524164  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_52_16524572  "1/1"         NA            "1/1"        
## HiC_scaffold_52_16525647  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_52_16637047  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_52_17202127  "0/0"         NA            NA           
## HiC_scaffold_52_17207724  NA            NA            "1/1"        
## HiC_scaffold_52_17508820  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_52_17547593  "1/1"         NA            "1/1"        
## HiC_scaffold_52_17551239  "1/1"         "0/1"         "1|1"        
## HiC_scaffold_52_17560696  "0|1"         NA            "0|1"        
## HiC_scaffold_52_17560699  "0|1"         NA            "0|1"        
## HiC_scaffold_52_17741250  "1/1"         NA            "0|1"        
## HiC_scaffold_52_17742260  "0/1"         "1|1"         NA           
## HiC_scaffold_52_18340578  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_52_18415911  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_52_22189517  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_52_22526592  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_52_26393471  NA            NA            "0/1"        
## HiC_scaffold_52_26799380  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_52_31871931  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_52_31874283  "0/1"         "1|1"         "1/1"        
## HiC_scaffold_52_31874287  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_52_32161053  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_52_33165557  "0/1"         "0/1"         "1/1"        
## HiC_scaffold_52_33897620  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_52_34763156  "0/1"         "1/1"         NA           
## HiC_scaffold_52_34763171  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_52_35174755  "0/1"         "0/0"         "1|1"        
## HiC_scaffold_52_35608453  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_52_35608470  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_52_39464728  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_52_42141354  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_52_44675725  "0/1"         NA            "1/1"        
## HiC_scaffold_52_49935920  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_53_21789524  "0/0"         "0/0"         NA           
## HiC_scaffold_53_25168042  "1/1"         "0/0"         NA           
## HiC_scaffold_53_26398989  "0|1"         "0/0"         "0|1"        
## HiC_scaffold_53_26398992  "0|1"         "0/0"         "0|1"        
## HiC_scaffold_53_26398994  "0|1"         "0/0"         "0|1"        
## HiC_scaffold_53_26549665  "0/0"         NA            "1/1"        
## HiC_scaffold_53_29227676  "1|1"         "0|1"         "0|1"        
## HiC_scaffold_53_31250349  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_54_530581    "0/0"         "1|1"         NA           
## HiC_scaffold_54_794095    "1|1"         "0/0"         "0/0"        
## HiC_scaffold_54_1171109   "0/0"         "1|1"         NA           
## HiC_scaffold_54_1378956   "0/0"         "0/1"         NA           
## HiC_scaffold_54_1380539   "1/1"         "1/1"         "0/0"        
## HiC_scaffold_54_3045015   "1/1"         "1/1"         "0/0"        
## HiC_scaffold_54_3185987   "0/0"         "0/1"         "1/1"        
## HiC_scaffold_54_4401098   "1|1"         "0/0"         "1|1"        
## HiC_scaffold_54_5595903   "0/1"         "1/1"         "1/1"        
## HiC_scaffold_54_5595921   "0|1"         "1/1"         "0/0"        
## HiC_scaffold_54_5595928   "0|1"         "0/0"         "0/0"        
## HiC_scaffold_54_5595949   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_54_6649662   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_54_8036734   "0/0"         "0|1"         "0|1"        
## HiC_scaffold_54_9206614   "0/0"         "0/0"         NA           
## HiC_scaffold_54_35913192  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_54_35913282  NA            "1|1"         "0/0"        
## HiC_scaffold_54_35913283  NA            "1|1"         "0/0"        
## HiC_scaffold_55_1260491   "1/1"         "0/1"         "1/1"        
## HiC_scaffold_55_3254027   "1/1"         "0/1"         "0/0"        
## HiC_scaffold_55_3281985   "0/0"         NA            "1|1"        
## HiC_scaffold_55_5409544   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_55_5411094   NA            "1|1"         "1|1"        
## HiC_scaffold_55_5411115   NA            "1/1"         "1|1"        
## HiC_scaffold_55_18121799  "1/1"         NA            NA           
## HiC_scaffold_55_19605809  "0|1"         "0/0"         "1|1"        
## HiC_scaffold_55_19605817  "0|1"         "0/0"         "1|1"        
## HiC_scaffold_55_19605821  "0|1"         "1/1"         "1|1"        
## HiC_scaffold_55_20195204  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_55_20886967  "1/1"         "0/0"         NA           
## HiC_scaffold_55_23222937  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_55_23626331  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_55_24539590  "1/1"         "1/1"         NA           
## HiC_scaffold_55_24585939  "0/1"         "0/0"         NA           
## HiC_scaffold_55_34174151  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_56_17874332  NA            "1/1"         "1/1"        
## HiC_scaffold_56_18635259  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_56_23654344  "0/0"         NA            "1/1"        
## HiC_scaffold_56_35850533  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_56_35850539  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_56_40813556  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_56_53211633  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_56_60070829  "0/1"         "1/1"         "0/1"        
## HiC_scaffold_56_73286017  "0/1"         NA            "1/1"        
## HiC_scaffold_56_73829442  "0/2"         "0/0"         "0/0"        
## HiC_scaffold_56_73829443  "0/2"         "0/0"         "0/0"        
## HiC_scaffold_56_76060304  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_57_25306408  "1/1"         "0/0"         NA           
## HiC_scaffold_57_29222385  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_57_29592432  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_57_31472698  "0/0"         NA            "0|1"        
## HiC_scaffold_57_32371742  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_57_36495072  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_57_37286264  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_57_38537415  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_57_45438854  "1/1"         NA            "2|2"        
## HiC_scaffold_57_52856874  "0/0"         NA            "0/1"        
## HiC_scaffold_57_53575355  "1/1"         "0/1"         "0/1"        
## HiC_scaffold_57_55856783  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_58_1362614   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_58_1432845   "1/1"         "1|1"         NA           
## HiC_scaffold_58_1541720   "2/2"         "1/2"         "0/0"        
## HiC_scaffold_58_2777120   "1/1"         "0/0"         NA           
## HiC_scaffold_58_2973169   "1/1"         NA            NA           
## HiC_scaffold_58_3243043   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_58_4035282   "1/1"         "0/0"         NA           
## HiC_scaffold_58_5442157   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_58_8004631   "0/1"         "0/1"         "0/0"        
## HiC_scaffold_58_8058998   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_58_8932837   "0/0"         "1/1"         "0/1"        
## HiC_scaffold_58_14814944  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_58_15639988  "0/0"         "1/1"         NA           
## HiC_scaffold_58_15707198  NA            "0/1"         NA           
## HiC_scaffold_58_15707258  "1/1"         NA            "0/0"        
## HiC_scaffold_58_15710623  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_58_19155063  "0/1"         NA            NA           
## HiC_scaffold_58_20224050  "1/1"         NA            "1/1"        
## HiC_scaffold_58_38475355  "1/1"         NA            "1/1"        
## HiC_scaffold_59_3979055   "0/0"         "0/1"         "0/1"        
## HiC_scaffold_59_5071810   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_59_5349936   "1/1"         NA            "1/1"        
## HiC_scaffold_59_5350114   "1/1"         "0/0"         "1/1"        
## HiC_scaffold_59_7738302   "0/1"         "0/0"         "1/1"        
## HiC_scaffold_59_7738351   "0/1"         "0/0"         "1/1"        
## HiC_scaffold_59_7958561   "0/0"         "1|1"         "0|1"        
## HiC_scaffold_59_9273798   "1/1"         "1/1"         "0/0"        
## HiC_scaffold_59_50928099  "0/1"         NA            "0/1"        
## HiC_scaffold_59_52960060  "0/1"         "0/0"         "1|1"        
## HiC_scaffold_6_10569023   "0/0"         "0/0"         NA           
## HiC_scaffold_6_10711445   "0/1"         "0/0"         "1/1"        
## HiC_scaffold_6_13209200   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_6_13213107   "0/0"         "0/0"         NA           
## HiC_scaffold_6_13311684   NA            "1|1"         "0/0"        
## HiC_scaffold_6_15670783   "0/0"         "0/0"         "0/1"        
## HiC_scaffold_6_19111232   "1/1"         "1/1"         "0/0"        
## HiC_scaffold_6_32805498   "0/0"         "1/1"         "1/1"        
## HiC_scaffold_6_38793174   "0/0"         "0/1"         "0/1"        
## HiC_scaffold_6_41092101   "0|1"         "0/0"         "0/0"        
## HiC_scaffold_6_41342933   "0/0"         NA            NA           
## HiC_scaffold_6_47594508   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_60_70878     "1|1"         "1|1"         "1|1"        
## HiC_scaffold_60_99549     "0/0"         "0/0"         NA           
## HiC_scaffold_60_201823    "0/1"         "0/0"         "0/1"        
## HiC_scaffold_60_712969    "1|1"         NA            "1|1"        
## HiC_scaffold_60_744783    "0|1"         "1|1"         "0|1"        
## HiC_scaffold_60_744788    "0/0"         "1|1"         "0|1"        
## HiC_scaffold_60_22142128  "0/1"         NA            "0/1"        
## HiC_scaffold_60_27599770  "1/1"         NA            "1/1"        
## HiC_scaffold_60_30608878  "0/1"         "0/0"         "1|1"        
## HiC_scaffold_60_32657324  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_60_32672580  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_60_38856893  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_60_39028335  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_60_40296869  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_60_42775723  "0/0"         NA            "0/0"        
## HiC_scaffold_60_44687906  NA            "0/0"         "0/0"        
## HiC_scaffold_60_44804601  "0/1"         "0/0"         NA           
## HiC_scaffold_60_53696867  "0/0"         NA            "0/0"        
## HiC_scaffold_60_53696868  "0/0"         NA            "0/0"        
## HiC_scaffold_60_60651515  "0/0"         NA            "1/1"        
## HiC_scaffold_60_70678462  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_61_2205328   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_61_2491706   "1/1"         "1/1"         "1|1"        
## HiC_scaffold_61_4009916   "0/0"         "0/2"         "1|1"        
## HiC_scaffold_61_4062917   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_61_4122763   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_61_4216461   "1/1"         NA            "0/0"        
## HiC_scaffold_61_4325053   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_61_9004838   "1|1"         NA            "1/1"        
## HiC_scaffold_61_14635083  "1/1"         "0/0"         "1|1"        
## HiC_scaffold_62_1128608   "1/1"         "1/1"         "0/1"        
## HiC_scaffold_62_11335200  "0/0"         NA            NA           
## HiC_scaffold_62_18828476  NA            "1/1"         "1/1"        
## HiC_scaffold_62_21548870  "1|1"         "1|1"         NA           
## HiC_scaffold_62_23103274  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_62_25793456  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_62_25887474  "1/1"         NA            "0/1"        
## HiC_scaffold_62_28516096  NA            "1|1"         "1|1"        
## HiC_scaffold_62_28516099  NA            "1|1"         "1|1"        
## HiC_scaffold_62_28818725  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_62_28818729  "0/0"         "1/1"         "1|1"        
## HiC_scaffold_62_45207353  "0|1"         "0/0"         "0/1"        
## HiC_scaffold_63_3092269   "1/1"         "0/1"         "1/1"        
## HiC_scaffold_63_3977940   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_63_4084937   "1/1"         "0/0"         "1/1"        
## HiC_scaffold_63_4196326   "1|1"         "0|1"         "0/1"        
## HiC_scaffold_63_6262453   "0/0"         "0/1"         "0/0"        
## HiC_scaffold_63_6350204   "0/1"         "1/1"         "1/1"        
## HiC_scaffold_63_6458794   NA            "0/1"         "0|1"        
## HiC_scaffold_64_9162978   "0/2"         "0/0"         "0/0"        
## HiC_scaffold_64_16876561  NA            "0/0"         "0/0"        
## HiC_scaffold_64_17543009  "0/1"         "0/1"         "0/0"        
## HiC_scaffold_64_18925356  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_64_19133050  "0/0"         NA            "1|1"        
## HiC_scaffold_64_19627769  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_64_20477250  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_64_22816677  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_64_22954654  "1|1"         "1|1"         NA           
## HiC_scaffold_64_22954658  "1|1"         "1|1"         NA           
## HiC_scaffold_64_22954682  "1/1"         "1/1"         NA           
## HiC_scaffold_65_6829971   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_65_8071102   NA            "0/0"         "0/0"        
## HiC_scaffold_65_9023979   "0/1"         "0/0"         "1/1"        
## HiC_scaffold_65_9839671   "0/1"         NA            "1/1"        
## HiC_scaffold_65_10404778  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_65_11327791  "1/1"         "1/1"         NA           
## HiC_scaffold_65_11332104  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_65_34823822  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_65_51418017  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_65_54053979  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_65_57110875  "1|1"         "0/0"         NA           
## HiC_scaffold_66_15615363  "1|1"         NA            "0|1"        
## HiC_scaffold_66_15672090  "0/0"         NA            "0/0"        
## HiC_scaffold_66_17903445  "0|1"         "0/0"         "1|1"        
## HiC_scaffold_66_18298629  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_66_19730676  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_66_23688768  "0/1"         "0/1"         "0/0"        
## HiC_scaffold_66_26614535  "0/0"         "2|2"         NA           
## HiC_scaffold_66_27445665  "1|1"         NA            "0/0"        
## HiC_scaffold_66_29457165  "0/1"         "1|1"         "1|1"        
## HiC_scaffold_66_29457180  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_66_30116287  "1/1"         NA            "0/0"        
## HiC_scaffold_66_31603503  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_66_33261460  "0/1"         "0|1"         "1/1"        
## HiC_scaffold_66_34138981  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_66_34139020  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_66_34142862  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_67_1404390   "0/0"         "0/0"         "0/1"        
## HiC_scaffold_67_28493665  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_67_30243885  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_67_31511806  "0|1"         "1|1"         "0/0"        
## HiC_scaffold_67_34638092  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_67_37534720  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_67_39679546  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_67_39854918  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_67_39860738  NA            "0/1"         "1/1"        
## HiC_scaffold_67_40331656  "0/1"         "0/1"         "1/1"        
## HiC_scaffold_67_40824747  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_68_3438132   "1|1"         "0|1"         "0/0"        
## HiC_scaffold_68_3438133   "1|1"         "0|1"         "0/0"        
## HiC_scaffold_68_11206902  "0/0"         NA            "1/1"        
## HiC_scaffold_68_32770607  "1|1"         "0|1"         "0/1"        
## HiC_scaffold_68_34016823  "0/0"         "0|2"         "0/0"        
## HiC_scaffold_68_34020019  "1/1"         "0/1"         "0/0"        
## HiC_scaffold_68_40296057  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_68_40296059  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_68_65001879  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_69_23311147  "0/0"         NA            "0/0"        
## HiC_scaffold_69_27351303  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_69_29437208  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_69_33699381  NA            "1|1"         "1|1"        
## HiC_scaffold_69_40194698  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_69_48273575  "1/1"         NA            "1|1"        
## HiC_scaffold_69_48348026  "0/1"         "0|1"         "0/1"        
## HiC_scaffold_69_48348034  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_69_49563252  "1/1"         NA            "0/1"        
## HiC_scaffold_69_49593952  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_69_49859037  "0|1"         "1|1"         "1|1"        
## HiC_scaffold_69_51271238  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_69_51529836  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_69_57313650  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_69_57359194  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_6951_523650  "0/1"         NA            "0/0"        
## HiC_scaffold_6951_897126  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_6951_1134482 "1|1"         "0/0"         "0/0"        
## HiC_scaffold_6951_2484960 "0/0"         "0/0"         "0/0"        
## HiC_scaffold_6951_3301273 "1|1"         "0/0"         "1|1"        
## HiC_scaffold_6951_3314609 "0/0"         "0/0"         "0/0"        
## HiC_scaffold_6951_3945993 "1|1"         "0/0"         "0/1"        
## HiC_scaffold_6958_218293  "0/2"         "0/0"         "0/0"        
## HiC_scaffold_6958_449143  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_7_351023     "1/1"         "0/0"         "1/1"        
## HiC_scaffold_7_488024     "1|1"         "0/0"         "0/0"        
## HiC_scaffold_7_492663     "1/1"         "0/1"         "0/1"        
## HiC_scaffold_7_693567     "1|1"         NA            "0/0"        
## HiC_scaffold_7_2379128    "0/0"         "0/0"         "0/0"        
## HiC_scaffold_7_3087721    NA            "1/1"         "1/1"        
## HiC_scaffold_7_3394880    "0/0"         "1/1"         "1/1"        
## HiC_scaffold_7_22247106   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_70_4632611   NA            "1|1"         "1|1"        
## HiC_scaffold_70_14042778  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_71_410844    "1|1"         "1|1"         "1|1"        
## HiC_scaffold_71_1753451   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_71_2283682   "0/0"         "0/1"         "0/0"        
## HiC_scaffold_71_3439685   "0|0"         "0/0"         "0/0"        
## HiC_scaffold_71_17850462  "1|1"         "1/1"         "0/0"        
## HiC_scaffold_71_20588314  "0|1"         "0/0"         "0/0"        
## HiC_scaffold_71_25465351  "0/0"         NA            "0|1"        
## HiC_scaffold_71_25465352  "0/0"         NA            "0|1"        
## HiC_scaffold_71_26356062  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_72_11785096  "0/1"         "1/1"         "0/1"        
## HiC_scaffold_72_17285854  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_72_23704999  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_72_24465318  "0|0"         "0/0"         NA           
## HiC_scaffold_72_30457277  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_72_32068649  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_72_35058295  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_72_36024997  "0/1"         "0/1"         "0/1"        
## HiC_scaffold_72_37135067  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_72_38410141  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_72_38448056  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_72_41412511  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_73_2192629   NA            "0/0"         NA           
## HiC_scaffold_73_2920208   "0|1"         NA            "0/0"        
## HiC_scaffold_73_4522493   "1/1"         "0/0"         "1/1"        
## HiC_scaffold_73_4748625   "1/1"         "1/1"         "1|1"        
## HiC_scaffold_73_5839336   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_73_9338582   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_73_27393859  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_74_14235619  NA            "1/1"         "1|1"        
## HiC_scaffold_74_14515598  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_74_15116121  "0/0"         NA            "0/0"        
## HiC_scaffold_74_17233613  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_74_17725340  "1|1"         "1|1"         NA           
## HiC_scaffold_74_18418135  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_74_18418138  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_74_21254425  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_74_22261065  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_74_47132519  "1|1"         "0/1"         "0/0"        
## HiC_scaffold_74_50979096  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_74_51060549  "1/1"         NA            "1/1"        
## HiC_scaffold_74_53256803  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_74_55464169  NA            "0/0"         "1/1"        
## HiC_scaffold_74_55515512  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_74_55999260  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_74_57404902  NA            "0/0"         "1|1"        
## HiC_scaffold_74_58181927  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_74_58198600  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_74_63060195  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_75_5345466   "1|1"         "0/0"         "0/1"        
## HiC_scaffold_75_5346522   "0/1"         "0/1"         "0/0"        
## HiC_scaffold_75_5346535   "0/1"         "0/1"         "0/0"        
## HiC_scaffold_75_9850973   "1/1"         "0/0"         "1|1"        
## HiC_scaffold_76_27149820  NA            "0/1"         "0/0"        
## HiC_scaffold_76_31582908  NA            NA            NA           
## HiC_scaffold_76_31792815  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_76_35352820  "1/1"         NA            "0/1"        
## HiC_scaffold_76_57782171  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_76_59862401  "0/1"         "0/0"         "0/1"        
## HiC_scaffold_76_61095594  NA            "0/0"         "1|1"        
## HiC_scaffold_76_65496128  "0/1"         "1/1"         "0/1"        
## HiC_scaffold_76_68965847  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_76_68966411  "1/1"         NA            "1/1"        
## HiC_scaffold_76_69823482  "1|1"         NA            "0/0"        
## HiC_scaffold_76_73343841  "1/1"         NA            "1/1"        
## HiC_scaffold_77_3598274   "1/1"         "0/0"         "0/1"        
## HiC_scaffold_77_6982137   "0/0"         "0/1"         NA           
## HiC_scaffold_77_11021994  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_77_13608165  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_77_16888594  "0/1"         "0|0"         "1/1"        
## HiC_scaffold_77_16888623  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_77_16889448  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_77_39784685  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_77_44375866  NA            "0/0"         "1/1"        
## HiC_scaffold_77_45385370  "0/0"         "0/0"         NA           
## HiC_scaffold_78_5719919   "0/0"         NA            "1/1"        
## HiC_scaffold_78_11353297  "1|1"         NA            "0/0"        
## HiC_scaffold_78_27316392  "0/1"         "1/1"         NA           
## HiC_scaffold_78_48124809  "0/0"         "2/2"         "1/1"        
## HiC_scaffold_78_48124826  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_78_48126176  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_78_48279096  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_78_48434558  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_78_49759181  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_78_49759192  "1|1"         "0/0"         NA           
## HiC_scaffold_78_49759215  "0/0"         "1/1"         NA           
## HiC_scaffold_78_51364025  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_78_55395445  "0/0"         NA            "0/0"        
## HiC_scaffold_78_59610866  "0/1"         "0/1"         "0/1"        
## HiC_scaffold_78_62136661  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_79_1643780   NA            "0/0"         "0|1"        
## HiC_scaffold_79_2519178   NA            "1/1"         "1/1"        
## HiC_scaffold_79_2858100   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_79_3922454   "0/1"         "1/1"         "0/0"        
## HiC_scaffold_79_4127878   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_79_4543693   NA            "0/0"         NA           
## HiC_scaffold_79_11507678  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_79_12618812  "0/0"         "1/1"         NA           
## HiC_scaffold_79_14185404  NA            "1|1"         "1|1"        
## HiC_scaffold_79_17120237  "0/0"         "0/0"         NA           
## HiC_scaffold_79_17120254  "0/0"         "0/0"         NA           
## HiC_scaffold_79_35551507  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_79_35551543  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_79_38927423  "0/0"         "0|1"         "1|1"        
## HiC_scaffold_79_42623307  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_79_43179786  "1|1"         NA            "0/0"        
## HiC_scaffold_79_43180099  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_79_43828078  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_79_43872513  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_79_44627215  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_79_50772769  NA            "1|1"         "1|1"        
## HiC_scaffold_79_55468575  "1/1"         "0/1"         "0/0"        
## HiC_scaffold_79_55816114  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_79_59915784  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_79_60165298  "0|1"         NA            "1|1"        
## HiC_scaffold_79_60165305  "0/1"         NA            "1|1"        
## HiC_scaffold_79_69145556  "0/0"         NA            "0/0"        
## HiC_scaffold_79_70208305  "0|1"         NA            "0/0"        
## HiC_scaffold_79_73412292  "0/0"         NA            "0/0"        
## HiC_scaffold_79_73416663  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_79_73416688  "0/0"         "1/1"         "1|1"        
## HiC_scaffold_79_76863102  "0/0"         NA            "0/1"        
## HiC_scaffold_79_81279649  "1|1"         NA            "1|1"        
## HiC_scaffold_79_81499990  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_79_82319836  "1|1"         "1/1"         "0/0"        
## HiC_scaffold_79_82319849  "1|1"         NA            "0/0"        
## HiC_scaffold_79_83163707  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_79_86283512  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_79_87123758  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_79_88362889  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_79_88599431  "0/0"         NA            "0/1"        
## HiC_scaffold_79_89322919  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_79_89331918  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_79_91340958  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_8_13649836   "1|1"         "1|1"         NA           
## HiC_scaffold_8_13650752   "1|1"         NA            "1|1"        
## HiC_scaffold_8_23818233   "0/1"         "1/1"         "0/1"        
## HiC_scaffold_8_24123972   "1|1"         "1|1"         "0/0"        
## HiC_scaffold_8_24230791   NA            "0/1"         "0/0"        
## HiC_scaffold_8_24588423   "0/0"         "1|1"         "0/0"        
## HiC_scaffold_8_25348483   "0/0"         NA            "0/0"        
## HiC_scaffold_8_25421933   "0/1"         "1/1"         "1/1"        
## HiC_scaffold_8_25772942   "1/1"         "1/1"         "0/0"        
## HiC_scaffold_8_26289589   "1|1"         "1|1"         "0/0"        
## HiC_scaffold_8_27602740   "0/1"         "1|1"         "0/0"        
## HiC_scaffold_8_28159063   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_8_30829320   "0/0"         "1/1"         "0/1"        
## HiC_scaffold_8_31044084   "0/0"         NA            "0/1"        
## HiC_scaffold_8_31415507   "0/0"         "0/0"         NA           
## HiC_scaffold_8_32594682   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_80_3617847   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_80_5758183   NA            "0/0"         "0/0"        
## HiC_scaffold_80_6760006   "0/0"         "0|1"         "1|1"        
## HiC_scaffold_80_6760037   "0/0"         "0/1"         "1/1"        
## HiC_scaffold_80_7772622   "1/1"         "1/1"         NA           
## HiC_scaffold_80_7919533   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_80_8110052   NA            "0/0"         "0/1"        
## HiC_scaffold_80_8193366   "1/1"         "1/1"         "0/1"        
## HiC_scaffold_80_8625784   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_80_8912846   "0/1"         "0/1"         "1/1"        
## HiC_scaffold_80_9544102   "0/1"         "1/1"         "0/0"        
## HiC_scaffold_80_10770701  "0/1"         "0/1"         NA           
## HiC_scaffold_80_11590146  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_80_16953653  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_80_18938832  "1|1"         "0/0"         NA           
## HiC_scaffold_80_19015946  "1/1"         "1/1"         NA           
## HiC_scaffold_80_19404001  NA            "1/1"         "1/1"        
## HiC_scaffold_80_25346708  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_80_37479851  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_80_37507516  "0/1"         NA            "0/1"        
## HiC_scaffold_81_1187192   "0/1"         NA            "1/1"        
## HiC_scaffold_81_2689826   "1|1"         "0|1"         "0/0"        
## HiC_scaffold_81_2690751   "1|1"         "0/0"         "1|1"        
## HiC_scaffold_81_6614123   "1/1"         "0/0"         "0/1"        
## HiC_scaffold_81_7836855   "0/0"         "0/0"         "0/1"        
## HiC_scaffold_81_10334868  "0/1"         "0/0"         NA           
## HiC_scaffold_81_10458752  NA            "0/0"         "0/0"        
## HiC_scaffold_81_17515538  "1/1"         NA            "0/0"        
## HiC_scaffold_81_40271282  NA            "0/1"         "1/1"        
## HiC_scaffold_81_40271294  NA            "0/1"         "0/0"        
## HiC_scaffold_81_41096427  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_81_41096444  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_81_43820595  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_81_43820732  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_81_43854278  "1/1"         NA            "0/0"        
## HiC_scaffold_81_44804862  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_81_45063428  "1/1"         NA            "0/0"        
## HiC_scaffold_81_45950590  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_81_46714752  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_81_46714759  NA            "0/0"         "0/0"        
## HiC_scaffold_81_47170397  NA            "1|1"         "0/1"        
## HiC_scaffold_81_47628201  NA            "0/0"         "0/0"        
## HiC_scaffold_81_48105216  "1|1"         "1|1"         "0/1"        
## HiC_scaffold_81_48932070  "0/0"         "1/1"         NA           
## HiC_scaffold_81_54050146  NA            "1/1"         "0/1"        
## HiC_scaffold_82_5672063   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_82_8796823   "0/0"         NA            "0/0"        
## HiC_scaffold_82_13450959  "0/0"         NA            "0/0"        
## HiC_scaffold_82_26144442  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_82_26147011  "1|1"         NA            "1|1"        
## HiC_scaffold_82_28907834  "0/1"         "1/1"         "0/1"        
## HiC_scaffold_82_34413793  "0/0"         "0/1"         "1|1"        
## HiC_scaffold_82_34413800  "1/1"         "0/1"         "1|1"        
## HiC_scaffold_82_36173035  "0/0"         NA            NA           
## HiC_scaffold_82_40539273  "1/1"         NA            NA           
## HiC_scaffold_82_41470256  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_83_23993605  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_83_35035961  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_83_43423618  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_83_46920654  NA            "0/1"         "1/1"        
## HiC_scaffold_83_46934197  "1/1"         NA            "0|1"        
## HiC_scaffold_84_356301    "0/0"         "0/0"         "1|1"        
## HiC_scaffold_84_5761817   "1/1"         "0/1"         "0/1"        
## HiC_scaffold_84_5769022   "0/0"         "1|1"         "0/1"        
## HiC_scaffold_84_6288130   NA            "0/0"         "0/0"        
## HiC_scaffold_84_6288141   NA            "0/0"         "1|1"        
## HiC_scaffold_84_6288147   NA            "0/0"         "0/0"        
## HiC_scaffold_84_7069238   "1|1"         "0|1"         "1|1"        
## HiC_scaffold_84_9131309   "1/1"         "0/1"         "0/0"        
## HiC_scaffold_84_10148442  "0/1"         "0/1"         "0/1"        
## HiC_scaffold_84_14659391  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_84_16302752  "1/1"         "1/1"         "2|2"        
## HiC_scaffold_84_18463244  "0/1"         "0/1"         "1/1"        
## HiC_scaffold_84_22909575  NA            "1|1"         "1|1"        
## HiC_scaffold_84_29275266  NA            "1/1"         "1/1"        
## HiC_scaffold_84_31184610  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_84_33093169  "0/0"         "0/0"         NA           
## HiC_scaffold_84_37675180  "0/1"         NA            "0/0"        
## HiC_scaffold_84_39501814  "0|1"         "0/0"         "1/1"        
## HiC_scaffold_84_50169438  "0/0"         NA            "1|1"        
## HiC_scaffold_84_50169445  "0/0"         NA            "1|1"        
## HiC_scaffold_84_51231025  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_85_9792207   "1/1"         "1|1"         "0/0"        
## HiC_scaffold_85_11784233  NA            "0/0"         "0/0"        
## HiC_scaffold_85_11911022  "0/0"         "1|1"         NA           
## HiC_scaffold_85_11911142  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_85_11913828  NA            "1/1"         "0/1"        
## HiC_scaffold_85_11913831  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_85_12353081  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_85_12414551  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_85_13043967  NA            "0/0"         "0|1"        
## HiC_scaffold_85_13221888  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_85_27008863  "1/1"         "0/0"         NA           
## HiC_scaffold_85_28992264  NA            "1|1"         "0|1"        
## HiC_scaffold_85_28992268  NA            "1|1"         "1/1"        
## HiC_scaffold_85_64310850  "1|1"         "0/0"         "1/1"        
## HiC_scaffold_85_65135112  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_85_65563529  NA            "1/1"         "1/1"        
## HiC_scaffold_86_1949664   "1|1"         "0/1"         "1|1"        
## HiC_scaffold_86_5340423   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_86_5483991   NA            "1|1"         "0/0"        
## HiC_scaffold_86_8928469   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_86_23727924  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_86_24825818  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_86_25333718  "1/1"         NA            NA           
## HiC_scaffold_86_29668168  "0/0"         "0/0"         NA           
## HiC_scaffold_86_30914243  "1|1"         NA            "0/0"        
## HiC_scaffold_86_32040320  "0/0"         "1|1"         NA           
## HiC_scaffold_86_32040329  "0/0"         "1|1"         NA           
## HiC_scaffold_86_32125061  NA            "0/0"         "0/0"        
## HiC_scaffold_86_32144758  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_86_32153692  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_86_32534129  "1/1"         "0|1"         "0/0"        
## HiC_scaffold_86_32605768  NA            "1|1"         "1|1"        
## HiC_scaffold_86_36355399  NA            "0/0"         "1/1"        
## HiC_scaffold_86_36357265  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_87_1253643   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_87_2137958   "1/1"         NA            "1/1"        
## HiC_scaffold_87_3980100   "1/1"         "0/0"         "1/1"        
## HiC_scaffold_87_4395923   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_87_5489328   "1|1"         NA            "1|1"        
## HiC_scaffold_87_6300441   "1/1"         "0/1"         "1/1"        
## HiC_scaffold_87_16306904  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_87_44780945  NA            "0/0"         "1|1"        
## HiC_scaffold_88_5584327   "0/1"         "0/1"         "1|1"        
## HiC_scaffold_88_7104630   "1|1"         "0/0"         "0|1"        
## HiC_scaffold_88_7104631   "1|1"         "1|1"         "0|1"        
## HiC_scaffold_88_7104638   "1|1"         "1|1"         "1/1"        
## HiC_scaffold_88_7104639   "1|1"         "1|1"         "0|1"        
## HiC_scaffold_88_7104640   "1|1"         "0/1"         "0|1"        
## HiC_scaffold_88_7479340   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_88_8773607   NA            "0/0"         "1|1"        
## HiC_scaffold_88_9883678   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_88_10878718  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_88_19365116  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_88_20477349  "0/0"         NA            "0/0"        
## HiC_scaffold_88_20557885  "0/1"         "0/0"         "0/1"        
## HiC_scaffold_89_675045    NA            "1/1"         "0/1"        
## HiC_scaffold_89_2815845   "0/0"         "0/0"         "0/2"        
## HiC_scaffold_89_2843940   "1|1"         "0/0"         "0|1"        
## HiC_scaffold_89_3018830   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_89_13745506  "0/0"         NA            "1/1"        
## HiC_scaffold_89_30006907  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_89_36509388  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_89_38703735  NA            "1/1"         NA           
## HiC_scaffold_89_38764895  "1/1"         NA            "1/1"        
## HiC_scaffold_89_42052609  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_89_42054991  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_89_44306958  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_89_44338206  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_89_45298973  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_9_3529921    NA            "0/0"         NA           
## HiC_scaffold_9_5660454    "0|1"         "1|1"         "0/1"        
## HiC_scaffold_9_5660461    "0|1"         "1|1"         "1/1"        
## HiC_scaffold_9_5854070    "1/1"         "1/1"         "1/1"        
## HiC_scaffold_9_6142415    "0/0"         "1|1"         "0/0"        
## HiC_scaffold_9_6142436    "0/0"         "1|1"         "0/0"        
## HiC_scaffold_9_6143781    "0/0"         NA            "0/1"        
## HiC_scaffold_9_6654825    "0/0"         "1/1"         "0/1"        
## HiC_scaffold_9_7094545    "0/1"         "1|1"         NA           
## HiC_scaffold_9_7100208    "1|1"         "1|1"         NA           
## HiC_scaffold_9_7109988    "0/1"         "0/1"         "0/0"        
## HiC_scaffold_9_7111922    NA            "1|1"         "1|1"        
## HiC_scaffold_9_8235781    NA            "1/1"         NA           
## HiC_scaffold_9_8279558    "1/1"         "1/1"         "0/0"        
## HiC_scaffold_9_15679481   "1|1"         "0/0"         NA           
## HiC_scaffold_9_18082611   "0/2"         "0/0"         "0/0"        
## HiC_scaffold_9_18090830   "1/1"         "1/1"         "0/1"        
## HiC_scaffold_9_30240531   NA            "1/1"         NA           
## HiC_scaffold_90_10418696  "1/1"         NA            "0/0"        
## HiC_scaffold_90_11470224  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_90_13593319  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_90_16260161  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_90_22325499  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_90_23574204  NA            "0|1"         "1/1"        
## HiC_scaffold_90_23609908  "1|1"         NA            "0/0"        
## HiC_scaffold_90_23623078  "1|1"         "0/0"         "0/1"        
## HiC_scaffold_90_23626883  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_90_23812663  NA            "1/1"         "1/1"        
## HiC_scaffold_90_25939283  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_90_25985714  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_90_30751272  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_90_31232025  "0|1"         "0/0"         "1|1"        
## HiC_scaffold_90_31245699  "0/0"         "1/1"         "0|1"        
## HiC_scaffold_90_31527975  "0/1"         "0/1"         "1/1"        
## HiC_scaffold_90_31546172  "0/0"         "0/1"         "1|1"        
## HiC_scaffold_90_38511996  "0/1"         NA            "0/0"        
## HiC_scaffold_90_38511999  "1|1"         NA            "0/0"        
## HiC_scaffold_90_38517279  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_90_40624104  "0/0"         NA            "0/1"        
## HiC_scaffold_91_5644765   "0/0"         "0/0"         "0/1"        
## HiC_scaffold_91_5867214   "0|1"         NA            "0|1"        
## HiC_scaffold_91_5867226   "0|1"         NA            "0|1"        
## HiC_scaffold_91_7704263   "0/0"         "1|1"         "0/0"        
## HiC_scaffold_91_7871360   NA            "1/1"         "1/1"        
## HiC_scaffold_91_8538014   NA            "1/1"         "1/1"        
## HiC_scaffold_91_13230485  "1|1"         "1|1"         NA           
## HiC_scaffold_91_28696118  "0/0"         NA            "0/1"        
## HiC_scaffold_91_28696625  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_91_42177482  NA            "0/0"         "0/0"        
## HiC_scaffold_91_46813640  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_92_23783035  NA            "0/0"         "0/0"        
## HiC_scaffold_92_23783036  NA            "0/0"         "0/0"        
## HiC_scaffold_92_24712793  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_92_28698258  "1|1"         NA            "1|1"        
## HiC_scaffold_92_40691582  "2/2"         "0/0"         NA           
## HiC_scaffold_92_43967712  "0/1"         "0/1"         NA           
## HiC_scaffold_92_47147572  "0|1"         "0/0"         "1/1"        
## HiC_scaffold_92_49042714  "1|1"         NA            "1|1"        
## HiC_scaffold_92_49042715  "1|1"         NA            "1|1"        
## HiC_scaffold_92_53634002  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_92_58211868  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_92_60114155  "0|1"         "0/0"         "1|1"        
## HiC_scaffold_92_63603483  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_92_64797225  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_92_68367476  "0|2"         "0/0"         "0|2"        
## HiC_scaffold_93_1912167   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_93_2485978   "0|1"         "0/0"         "0/0"        
## HiC_scaffold_93_3227638   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_93_3227641   "1|1"         "1|1"         "0/0"        
## HiC_scaffold_93_13971208  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_93_13987080  "0/0"         "0/0"         NA           
## HiC_scaffold_93_21125468  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_93_21845293  NA            "0/0"         "0/0"        
## HiC_scaffold_93_21845310  "0/0"         "0/0"         NA           
## HiC_scaffold_93_21846342  "1/1"         "0/0"         "0|1"        
## HiC_scaffold_93_21846356  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_93_22589723  "0/0"         "0/0"         NA           
## HiC_scaffold_93_22619278  "0/0"         NA            "1/1"        
## HiC_scaffold_93_22631258  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_93_22631266  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_94_3110102   NA            "0/0"         "0/0"        
## HiC_scaffold_94_3205919   "0/1"         NA            "1/1"        
## HiC_scaffold_94_9023846   "0/1"         "0/0"         "0/1"        
## HiC_scaffold_94_11572820  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_94_12368532  "0/1"         "0/1"         "0/0"        
## HiC_scaffold_94_42179418  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_94_42179519  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_94_51646206  "0/2"         "0/0"         "1/1"        
## HiC_scaffold_94_52781289  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_94_53790035  "0/0"         "1|1"         "0/1"        
## HiC_scaffold_94_53792738  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_94_56768905  "0|1"         "1|1"         "1|1"        
## HiC_scaffold_946_81276    "0/0"         "1/1"         "1/1"        
## HiC_scaffold_95_3189690   "1/1"         "1/1"         "0/1"        
## HiC_scaffold_95_4397298   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_95_9469157   "0/0"         "1|1"         "1|1"        
## HiC_scaffold_95_10641411  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_95_10949821  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_95_12993394  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_95_15515793  "0|1"         NA            "0/0"        
## HiC_scaffold_95_15608785  "1|1"         "1|1"         NA           
## HiC_scaffold_95_15609137  "0/0"         NA            "1/1"        
## HiC_scaffold_95_16295316  "0/0"         NA            "0/1"        
## HiC_scaffold_95_22656165  "0/0"         "1|1"         "0|1"        
## HiC_scaffold_95_25885727  "0/0"         "0/0"         "0|1"        
## HiC_scaffold_96_10460019  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_96_27155785  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_96_37939434  "0/1"         "1|1"         "0/1"        
## HiC_scaffold_96_51115048  "0/0"         "1/1"         "1|1"        
## HiC_scaffold_96_51116511  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_96_51915040  NA            "0/0"         "1|1"        
## HiC_scaffold_96_52681287  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_96_53276519  "0/0"         "0/1"         NA           
## HiC_scaffold_97_1736926   "0/0"         "1|1"         "1|1"        
## HiC_scaffold_97_1736994   "0/0"         "1|1"         NA           
## HiC_scaffold_97_3863543   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_97_4200445   NA            "0/0"         "0/0"        
## HiC_scaffold_97_4799162   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_97_5027892   "1/1"         NA            "0/0"        
## HiC_scaffold_97_8007933   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_97_17997210  "1|1"         NA            "0/0"        
## HiC_scaffold_97_18604647  "1/1"         "1/1"         "1|1"        
## HiC_scaffold_97_20239636  "0|1"         "1|1"         NA           
## HiC_scaffold_98_15154096  "1/1"         "1|1"         "1/1"        
## HiC_scaffold_98_22342667  "0/0"         NA            NA           
## HiC_scaffold_98_22634293  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_98_22634294  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_98_22721138  "1/1"         NA            "1/1"        
## HiC_scaffold_98_22869378  "0/0"         NA            "0/0"        
## HiC_scaffold_98_24108405  "1|1"         "0/1"         "0/0"        
## HiC_scaffold_98_27359592  "0/1"         "0/1"         "1|1"        
## HiC_scaffold_98_28549834  "0/1"         "1/1"         NA           
## HiC_scaffold_98_28867520  "0|1"         "0/0"         "1|1"        
## HiC_scaffold_98_28867524  "0|1"         "0/0"         "1|1"        
## HiC_scaffold_98_29431717  "1|1"         "0/0"         NA           
## HiC_scaffold_98_29675109  "0/1"         "0/1"         NA           
## HiC_scaffold_99_1163244   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_99_1451611   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_99_2021961   "0/0"         NA            "0/0"        
## HiC_scaffold_99_5134392   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_99_5239109   "0/1"         "0/0"         "0/1"        
## HiC_scaffold_99_6917738   NA            "1|1"         "1|1"        
## HiC_scaffold_99_11221970  "1|1"         "0/0"         "0|1"        
## HiC_scaffold_99_25982503  "1/1"         "1/1"         "1/1"        
##                           Tank_7_Crab_1 Tank_7_Crab_3 Tank_7_Crab_4
## HiC_scaffold_1_2523394    "1/1"         "0/0"         "0/1"        
## HiC_scaffold_1_2542157    "0/0"         "1/1"         "0/0"        
## HiC_scaffold_1_2647806    "0/0"         "1/1"         "0/0"        
## HiC_scaffold_1_2970226    "0/0"         "1|1"         "1|1"        
## HiC_scaffold_1_3329447    "0/0"         "0/0"         "0/0"        
## HiC_scaffold_1_3795100    "0/0"         "0/0"         "1|1"        
## HiC_scaffold_10_2221345   "0/0"         "0/0"         NA           
## HiC_scaffold_10_2299490   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_10_2565301   "1/1"         "0/1"         NA           
## HiC_scaffold_10_3864355   NA            "1/1"         NA           
## HiC_scaffold_10_4319900   "1|1"         "0/0"         "0|1"        
## HiC_scaffold_10_4319907   "1|1"         "0/0"         "0|1"        
## HiC_scaffold_10_5404579   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_10_5843373   "1/1"         NA            "0/1"        
## HiC_scaffold_100_854947   NA            "1|1"         "1|1"        
## HiC_scaffold_100_1070817  "0/1"         NA            "1/1"        
## HiC_scaffold_100_2002094  NA            "0/0"         "0|1"        
## HiC_scaffold_100_2002097  NA            "0/0"         "0|1"        
## HiC_scaffold_100_2010331  NA            "1|1"         "1|1"        
## HiC_scaffold_100_5186498  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_100_5828477  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_100_6470419  "0|1"         "0|1"         "1|1"        
## HiC_scaffold_100_6739225  "0/0"         NA            "1/1"        
## HiC_scaffold_100_6739258  "0/0"         NA            "1|1"        
## HiC_scaffold_100_6739264  "0/0"         NA            "1|1"        
## HiC_scaffold_100_6907177  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_100_8384481  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_100_8384495  NA            "1/1"         "1|1"        
## HiC_scaffold_100_9451470  NA            NA            "0/0"        
## HiC_scaffold_100_10464574 "0/1"         NA            "1/1"        
## HiC_scaffold_100_11934792 "0/0"         "1|1"         NA           
## HiC_scaffold_100_11980177 "1/1"         "1|1"         NA           
## HiC_scaffold_100_18465760 "1|1"         "0/0"         NA           
## HiC_scaffold_100_18465762 "1|1"         "0/0"         NA           
## HiC_scaffold_100_18466205 "2|2"         NA            NA           
## HiC_scaffold_100_31738115 "0/1"         "1/1"         "1/1"        
## HiC_scaffold_100_44227362 "0/0"         "0/0"         NA           
## HiC_scaffold_101_12808961 "0/1"         "0/0"         "0|1"        
## HiC_scaffold_101_13897149 "1/1"         "1/1"         "1/1"        
## HiC_scaffold_101_18337279 "0/0"         NA            "0/0"        
## HiC_scaffold_101_20800167 "1/1"         "1/1"         "1/1"        
## HiC_scaffold_102_2260041  "1/1"         "0/0"         NA           
## HiC_scaffold_102_8734519  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_102_10233999 NA            "0/0"         "0/0"        
## HiC_scaffold_102_11446042 "1/1"         "0/0"         NA           
## HiC_scaffold_102_15918694 "0/0"         "0/0"         NA           
## HiC_scaffold_102_15935667 "1/1"         "0/0"         "1/1"        
## HiC_scaffold_102_17442643 "0/0"         "1/1"         "0/0"        
## HiC_scaffold_102_17608969 "0/0"         "1/1"         "0/0"        
## HiC_scaffold_102_20180185 "0/0"         "1/1"         NA           
## HiC_scaffold_102_24788723 "1/1"         "0/0"         "0/0"        
## HiC_scaffold_102_25423729 NA            "1|1"         NA           
## HiC_scaffold_102_39755142 "0/0"         NA            "1/1"        
## HiC_scaffold_102_52046978 "1/1"         "0/1"         NA           
## HiC_scaffold_1027_34152   "1/1"         "1/1"         "0/0"        
## HiC_scaffold_103_601715   "0/1"         "0/1"         "1/1"        
## HiC_scaffold_103_2891384  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_103_8191270  "0/0"         NA            NA           
## HiC_scaffold_103_9521272  NA            "1/1"         "0/0"        
## HiC_scaffold_103_14768909 "0/0"         "0/0"         "0/0"        
## HiC_scaffold_103_19312119 "1|1"         "1/1"         NA           
## HiC_scaffold_103_21284866 "1/1"         NA            NA           
## HiC_scaffold_103_31428453 NA            "1|1"         NA           
## HiC_scaffold_103_42567396 "1/1"         "0/0"         "1/1"        
## HiC_scaffold_103_45921571 "0/0"         "1|1"         "0/0"        
## HiC_scaffold_103_45921573 "0/0"         "1|1"         "0/0"        
## HiC_scaffold_103_49592022 "1|1"         "0/0"         "1/1"        
## HiC_scaffold_103_49620132 NA            NA            NA           
## HiC_scaffold_103_50440915 "0/0"         "1|1"         "0/0"        
## HiC_scaffold_103_51944137 "1/1"         "1/1"         NA           
## HiC_scaffold_103_54308582 "0/1"         "0/0"         "0/0"        
## HiC_scaffold_103_54424067 "0/0"         "0/0"         "0/0"        
## HiC_scaffold_103_56932900 "0/1"         "1/1"         NA           
## HiC_scaffold_103_57470264 "1|1"         "1|1"         "1|1"        
## HiC_scaffold_104_7771140  NA            NA            NA           
## HiC_scaffold_104_9103028  "0/0"         NA            NA           
## HiC_scaffold_104_10633168 "0/0"         "0/0"         NA           
## HiC_scaffold_104_18917031 "0/0"         "0/0"         NA           
## HiC_scaffold_104_20851902 "0/0"         "1/1"         "1/1"        
## HiC_scaffold_104_24451803 "0/1"         "1/1"         NA           
## HiC_scaffold_104_28597688 "0|1"         "0/0"         "0/1"        
## HiC_scaffold_104_40927999 "0/0"         "0/0"         "1/1"        
## HiC_scaffold_104_46490074 "1/1"         "0/1"         "0/0"        
## HiC_scaffold_104_49759053 "0/1"         "0/1"         "1/1"        
## HiC_scaffold_104_57267896 "0/0"         "0/0"         NA           
## HiC_scaffold_104_62570010 "0/0"         "0/0"         NA           
## HiC_scaffold_11_32804173  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_11_34516508  "1/1"         NA            "1/1"        
## HiC_scaffold_11_35332996  NA            "0/0"         "0/0"        
## HiC_scaffold_11_35904027  NA            "1/1"         "1/1"        
## HiC_scaffold_11_41539793  "1/1"         "1|1"         NA           
## HiC_scaffold_11_41604080  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_11_42855323  "1/1"         NA            "1/1"        
## HiC_scaffold_11_45339409  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_11_45339410  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_11_47544035  "0/0"         NA            NA           
## HiC_scaffold_12_7515164   NA            "0/0"         NA           
## HiC_scaffold_12_12640100  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_12_12826705  NA            "0/0"         NA           
## HiC_scaffold_12_14899285  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_12_17465672  "0|1"         "0|1"         NA           
## HiC_scaffold_12_22770710  "0/0"         "0/0"         NA           
## HiC_scaffold_12_32318964  "1|1"         NA            NA           
## HiC_scaffold_12_35136373  "0/0"         "0/0"         NA           
## HiC_scaffold_12_40687860  "0/0"         NA            "0/0"        
## HiC_scaffold_13_2938168   "0/1"         NA            NA           
## HiC_scaffold_13_20350974  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_13_27759554  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_13_28146828  "0|0"         NA            "0/0"        
## HiC_scaffold_13_28146830  "0|0"         NA            "0/0"        
## HiC_scaffold_13_28925343  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_13_31913129  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_13_32078924  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_13_33864805  NA            "1/1"         "0/1"        
## HiC_scaffold_13_34892542  "0/1"         "0/0"         NA           
## HiC_scaffold_13_34893103  "1/1"         NA            NA           
## HiC_scaffold_13_35762551  "0|1"         "0/0"         NA           
## HiC_scaffold_13_35881745  "1|1"         "1/1"         "1/1"        
## HiC_scaffold_13_35881749  "1|1"         "0/1"         "0/0"        
## HiC_scaffold_14_3843214   NA            "0/0"         "0/0"        
## HiC_scaffold_14_25884262  "0/0"         NA            "0/0"        
## HiC_scaffold_14_27050415  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_14_27118495  "1/1"         "1/1"         NA           
## HiC_scaffold_14_27277222  NA            NA            NA           
## HiC_scaffold_14_29215814  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_15_2460398   "0/0"         "1|1"         "0/0"        
## HiC_scaffold_15_2462980   "1/1"         "1/1"         "0/1"        
## HiC_scaffold_15_2467289   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_15_5669141   "1/1"         "1/1"         NA           
## HiC_scaffold_15_13700694  NA            "0/2"         NA           
## HiC_scaffold_15_17825275  "0/0"         NA            NA           
## HiC_scaffold_15_19938475  "1/1"         NA            NA           
## HiC_scaffold_15_23865956  "0/0"         NA            "0/0"        
## HiC_scaffold_15_28837774  "1/1"         "1|1"         "0/0"        
## HiC_scaffold_15_28837810  "0/0"         "0/0"         NA           
## HiC_scaffold_15_28837823  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_15_28837835  NA            "1/1"         "0/0"        
## HiC_scaffold_15_28837841  NA            "0/0"         "0/0"        
## HiC_scaffold_15_28837854  NA            NA            "1/1"        
## HiC_scaffold_15_34827832  "0|1"         "0/0"         "0/0"        
## HiC_scaffold_15_34893807  NA            NA            "1/1"        
## HiC_scaffold_15_35327348  "0/1"         "1/1"         NA           
## HiC_scaffold_15_42161112  "1|1"         NA            NA           
## HiC_scaffold_15_42164926  "0/0"         "1|1"         NA           
## HiC_scaffold_15_42164946  "0/0"         "1/1"         NA           
## HiC_scaffold_15_46289572  "1/1"         "1/1"         NA           
## HiC_scaffold_15_50591576  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_15_50759128  "0/1"         "1|1"         NA           
## HiC_scaffold_15_51188336  "0/0"         "0/1"         "1|1"        
## HiC_scaffold_15_54726640  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_15_54788235  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_15_56162375  NA            "0|1"         "0|1"        
## HiC_scaffold_15_61091106  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_15_61464359  NA            "1/1"         "1/1"        
## HiC_scaffold_15_61510386  "1/1"         "0/0"         NA           
## HiC_scaffold_15_62309788  NA            "0/0"         "1|1"        
## HiC_scaffold_15_62309793  NA            "0/0"         "1|1"        
## HiC_scaffold_15_62771254  "0/0"         NA            "0/0"        
## HiC_scaffold_15_63493927  "1/1"         "1/1"         NA           
## HiC_scaffold_15_64997502  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_15_65007865  "0|1"         NA            "1|1"        
## HiC_scaffold_15_65007879  "0|1"         NA            "0/1"        
## HiC_scaffold_15_66038529  "0/1"         "0/0"         "0/1"        
## HiC_scaffold_15_69811281  "1/1"         NA            NA           
## HiC_scaffold_16_14205925  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_16_30404047  "0/0"         "0/0"         NA           
## HiC_scaffold_16_57413288  NA            "0|1"         NA           
## HiC_scaffold_16_63687578  "1|1"         "0/1"         NA           
## HiC_scaffold_16_74138787  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_16_74140106  NA            "0/0"         "0/0"        
## HiC_scaffold_16_76276015  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_17_11390873  "0/0"         NA            NA           
## HiC_scaffold_17_12551128  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_17_16615612  "1/1"         "0/0"         NA           
## HiC_scaffold_17_18838093  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_17_22801072  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_17_23788599  "0/0"         "0/0"         NA           
## HiC_scaffold_17_29383895  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_17_29618771  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_17_29976139  NA            "0/1"         "1/1"        
## HiC_scaffold_17_31107213  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_17_32493792  "1/1"         "1/1"         NA           
## HiC_scaffold_17_33732050  "1/1"         NA            "0/0"        
## HiC_scaffold_17_33801314  "1|1"         "0/0"         NA           
## HiC_scaffold_17_34081889  "0/1"         "1/1"         "0/1"        
## HiC_scaffold_18_227565    "0/0"         "0/0"         "0/0"        
## HiC_scaffold_18_1213486   "0/1"         "1/1"         "0/1"        
## HiC_scaffold_18_1701312   "0/0"         "0/0"         NA           
## HiC_scaffold_18_3506437   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_18_6304978   "1/1"         "1/1"         "0/1"        
## HiC_scaffold_18_6351493   NA            "0/0"         NA           
## HiC_scaffold_18_6358009   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_18_10770701  "1/1"         "0/0"         NA           
## HiC_scaffold_18_13342858  NA            "1/1"         "1/1"        
## HiC_scaffold_18_20045832  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_18_22682683  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_18_26337790  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_18_48929148  "0/0"         "0/1"         NA           
## HiC_scaffold_18_51490626  "0/0"         NA            NA           
## HiC_scaffold_18_53723137  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_18_54496637  NA            "1|1"         "0/1"        
## HiC_scaffold_18_55294388  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_19_279726    "0/1"         "1/1"         NA           
## HiC_scaffold_19_6426572   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_19_6575887   "0/0"         NA            NA           
## HiC_scaffold_19_7755254   "0|1"         NA            "0/0"        
## HiC_scaffold_19_9301421   "0/1"         NA            "0/0"        
## HiC_scaffold_19_9357388   NA            "1|1"         "0/0"        
## HiC_scaffold_19_9778841   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_19_10928976  "1|1"         "0/0"         NA           
## HiC_scaffold_19_10928980  "1|1"         "0/0"         NA           
## HiC_scaffold_19_10928982  "0/0"         "1|1"         NA           
## HiC_scaffold_19_11106347  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_19_11590139  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_19_11665300  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_19_14793640  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_19_22112743  "0/1"         "1|1"         "0/1"        
## HiC_scaffold_19_25473671  "1/1"         "0/1"         "0/1"        
## HiC_scaffold_19_25473692  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_19_28110829  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_19_28465002  "1/1"         "0/0"         NA           
## HiC_scaffold_19_28465167  NA            "0/1"         NA           
## HiC_scaffold_19_30106869  "1|1"         NA            NA           
## HiC_scaffold_19_52538858  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_19_52596196  "0/0"         "0/0"         "0|1"        
## HiC_scaffold_19_53482993  "1/1"         "0/0"         "1|1"        
## HiC_scaffold_19_54312637  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_19_59345841  "0/0"         "0/0"         NA           
## HiC_scaffold_2_3296144    "1|1"         "1|1"         NA           
## HiC_scaffold_2_3418589    "1/1"         "0/1"         "1/1"        
## HiC_scaffold_2_3864060    NA            "1/1"         NA           
## HiC_scaffold_2_4104755    "0/0"         "0/0"         NA           
## HiC_scaffold_2_4104758    "0/0"         "0/0"         NA           
## HiC_scaffold_2_8316721    "0/0"         "1|1"         "0/0"        
## HiC_scaffold_2_9098999    NA            "1/1"         "0/1"        
## HiC_scaffold_2_10457537   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_2_19048125   "1/1"         NA            "0/0"        
## HiC_scaffold_2_21748201   "1/1"         "1/1"         "0|1"        
## HiC_scaffold_2_33187764   NA            "0/0"         "0/0"        
## HiC_scaffold_2_33187770   NA            "0/0"         "0/0"        
## HiC_scaffold_2_33187959   NA            NA            "1/1"        
## HiC_scaffold_2_41603929   "1/1"         "0/1"         NA           
## HiC_scaffold_2_52233191   "1/1"         "0/0"         NA           
## HiC_scaffold_2_52400748   "1|1"         NA            NA           
## HiC_scaffold_2_52403793   "1|1"         NA            NA           
## HiC_scaffold_2_52799130   NA            "0/1"         "0/1"        
## HiC_scaffold_20_10332897  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_20_17198418  "1|1"         "1|1"         "0/1"        
## HiC_scaffold_20_17915398  "0/0"         "1|1"         "0/1"        
## HiC_scaffold_20_18872955  "0/1"         NA            NA           
## HiC_scaffold_20_19055301  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_20_19150094  "0/1"         "1/1"         NA           
## HiC_scaffold_20_20651022  "0/1"         "0/1"         "1|1"        
## HiC_scaffold_20_22651296  "1/1"         "1/1"         NA           
## HiC_scaffold_21_2009156   "0|1"         "0/0"         "0/0"        
## HiC_scaffold_21_2435648   NA            "0/1"         "1/1"        
## HiC_scaffold_21_7164210   "0/0"         "0|1"         "0/0"        
## HiC_scaffold_21_9786512   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_21_12424922  "1/1"         "1|1"         "1/1"        
## HiC_scaffold_21_17966833  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_21_19025429  "1/1"         "1/1"         NA           
## HiC_scaffold_21_20058318  "0|1"         "0|1"         "0/0"        
## HiC_scaffold_21_20562855  NA            "0|1"         NA           
## HiC_scaffold_21_20661860  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_21_20895395  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_21_21158811  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_21_22250857  "1/1"         NA            "0/0"        
## HiC_scaffold_21_22250866  "0|1"         NA            "0/0"        
## HiC_scaffold_21_22257737  "1|1"         "0/1"         "0|1"        
## HiC_scaffold_21_22644667  "1|1"         "1|1"         NA           
## HiC_scaffold_21_22644673  "1|1"         "1|1"         NA           
## HiC_scaffold_21_22666888  "0/1"         "1/1"         NA           
## HiC_scaffold_21_23905416  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_21_23981651  "0/0"         NA            NA           
## HiC_scaffold_21_24287068  "0/1"         "0/0"         NA           
## HiC_scaffold_21_30798434  "0/0"         "0/0"         NA           
## HiC_scaffold_21_35006232  "1/1"         NA            "1/1"        
## HiC_scaffold_21_35779294  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_22_124910    "1/1"         "0/1"         "0/1"        
## HiC_scaffold_22_751023    "0/1"         "0|1"         "0/1"        
## HiC_scaffold_22_1042644   "0|1"         "1|1"         "0/0"        
## HiC_scaffold_22_1044708   "0/1"         "0/1"         "1/1"        
## HiC_scaffold_22_2174911   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_22_3431122   "0|1"         "1|1"         "0/0"        
## HiC_scaffold_22_3446787   "0|0"         "0/0"         "0/0"        
## HiC_scaffold_22_3451756   "1/1"         "0/0"         NA           
## HiC_scaffold_22_3720435   "1/1"         "1/1"         NA           
## HiC_scaffold_22_4065466   "1|1"         "1|1"         NA           
## HiC_scaffold_22_4739889   "2/2"         "0/0"         "0/0"        
## HiC_scaffold_22_4918263   NA            "1|1"         "1|1"        
## HiC_scaffold_22_5750008   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_22_5769942   NA            "0/0"         "1/1"        
## HiC_scaffold_22_28264522  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_22_28265115  "1/1"         NA            NA           
## HiC_scaffold_22_29205851  "0/1"         NA            "1/1"        
## HiC_scaffold_22_29822340  "1/1"         "1/1"         NA           
## HiC_scaffold_22_30797357  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_22_32042610  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_23_11215327  "0/0"         "1/1"         NA           
## HiC_scaffold_23_27081333  "0/0"         NA            "1/1"        
## HiC_scaffold_23_28672255  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_23_29218828  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_23_32528768  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_23_32669383  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_23_33199663  "0/0"         "1|1"         "1/1"        
## HiC_scaffold_23_33245843  "1/1"         "0/1"         "0/0"        
## HiC_scaffold_23_40824545  "0/0"         "0/0"         NA           
## HiC_scaffold_23_41504669  "0/1"         "1/1"         NA           
## HiC_scaffold_24_16622654  "1|1"         "1/1"         "0/0"        
## HiC_scaffold_24_16622681  "1|1"         "1/1"         "0/0"        
## HiC_scaffold_24_19851560  NA            "1/1"         "0|1"        
## HiC_scaffold_24_20590563  "0/0"         NA            "1/1"        
## HiC_scaffold_24_27745754  NA            "0/0"         NA           
## HiC_scaffold_24_28763699  "1|1"         "1|1"         NA           
## HiC_scaffold_24_28763703  "1|1"         "1|1"         NA           
## HiC_scaffold_25_4135969   "0/0"         NA            "0/1"        
## HiC_scaffold_25_4201677   "0/0"         "1/1"         NA           
## HiC_scaffold_25_5872831   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_25_6879627   "1/1"         "0/1"         "0/0"        
## HiC_scaffold_25_8172813   "0/0"         "1/1"         "1/1"        
## HiC_scaffold_25_9969507   "1|1"         "0/0"         NA           
## HiC_scaffold_25_10691336  "0/0"         "1/1"         NA           
## HiC_scaffold_25_21286462  "0/0"         "1/1"         NA           
## HiC_scaffold_26_4086662   "0|1"         "1/1"         "0/0"        
## HiC_scaffold_26_7539671   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_26_8348511   "0/1"         "1/1"         "0/1"        
## HiC_scaffold_26_9043748   "0|1"         "0/0"         NA           
## HiC_scaffold_26_9045655   NA            "0/0"         "1|1"        
## HiC_scaffold_26_11253181  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_26_17828344  NA            "1/1"         NA           
## HiC_scaffold_26_17932520  "1/1"         NA            "1/1"        
## HiC_scaffold_26_17941459  NA            "0/1"         "1/1"        
## HiC_scaffold_26_17960877  "1/1"         NA            "1/1"        
## HiC_scaffold_26_18284041  "1/1"         "0/1"         "0/1"        
## HiC_scaffold_26_18288701  "1|1"         NA            "1|1"        
## HiC_scaffold_26_18294422  NA            "1|1"         "0/1"        
## HiC_scaffold_26_21307365  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_26_22159924  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_26_22161535  NA            "0/1"         "1/1"        
## HiC_scaffold_26_24794176  "1/1"         "0/1"         NA           
## HiC_scaffold_26_28538113  "1|1"         "1|1"         "0|1"        
## HiC_scaffold_26_29031357  NA            "1/1"         "0/0"        
## HiC_scaffold_26_29163462  "0/0"         "1/1"         NA           
## HiC_scaffold_26_42631018  "0/1"         "0/0"         NA           
## HiC_scaffold_26_42634814  "1/1"         "1/1"         NA           
## HiC_scaffold_26_43483190  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_26_49955889  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_26_58342510  "1|1"         "1|1"         NA           
## HiC_scaffold_27_1496120   "1|1"         NA            NA           
## HiC_scaffold_27_1947057   "0/1"         "0/1"         "0/0"        
## HiC_scaffold_27_2359058   "0/0"         NA            NA           
## HiC_scaffold_27_2699645   NA            "1/1"         NA           
## HiC_scaffold_27_4425475   NA            "1|1"         NA           
## HiC_scaffold_27_7539469   "0/0"         "1|1"         "0/0"        
## HiC_scaffold_27_7777122   "0/0"         "0/0"         "0|1"        
## HiC_scaffold_27_16657070  "0/0"         NA            "0/0"        
## HiC_scaffold_27_24539255  "0/0"         "0|1"         "0|1"        
## HiC_scaffold_27_34642359  "0/0"         "0/0"         NA           
## HiC_scaffold_27_34647277  "0/0"         "0/0"         "2|2"        
## HiC_scaffold_27_35380535  "0/1"         "1/1"         NA           
## HiC_scaffold_27_35383230  "1|1"         "0/0"         NA           
## HiC_scaffold_28_21261390  "0/0"         "1|1"         NA           
## HiC_scaffold_28_24490442  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_28_25601927  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_28_31793968  "2|2"         "1/1"         "0/0"        
## HiC_scaffold_28_32126687  "0/0"         "0/0"         NA           
## HiC_scaffold_28_34779518  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_28_36042491  "0/0"         "1/1"         NA           
## HiC_scaffold_28_36692361  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_28_38672993  "0/0"         "1|1"         "0|1"        
## HiC_scaffold_28_39640526  "0/1"         "0/0"         NA           
## HiC_scaffold_28_40169242  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_28_41059640  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_28_42514830  NA            "0/0"         "1/1"        
## HiC_scaffold_28_42601570  "0/0"         "0/1"         NA           
## HiC_scaffold_28_42601585  "0/0"         "0/1"         NA           
## HiC_scaffold_28_43018803  "1/1"         NA            "0/0"        
## HiC_scaffold_28_43036165  NA            "0/0"         NA           
## HiC_scaffold_29_344317    "1/1"         NA            NA           
## HiC_scaffold_29_3811176   "1/1"         NA            "0/1"        
## HiC_scaffold_29_6073993   "1|1"         "0/0"         NA           
## HiC_scaffold_29_6415222   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_29_8224424   "0/0"         "0/1"         "0/0"        
## HiC_scaffold_29_11153624  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_29_11153712  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_29_11167966  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_29_11491468  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_29_12103558  "0/0"         "0/0"         NA           
## HiC_scaffold_29_14279322  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_29_14913907  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_29_16378276  "0/1"         "1/1"         NA           
## HiC_scaffold_29_20635937  "0/1"         NA            NA           
## HiC_scaffold_29_20636787  NA            "0/0"         NA           
## HiC_scaffold_29_22560215  "0/0"         "1/1"         NA           
## HiC_scaffold_29_22561144  NA            "1/1"         NA           
## HiC_scaffold_29_24017849  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_29_31603590  "0/0"         "0|1"         NA           
## HiC_scaffold_3_21670751   "1/1"         NA            NA           
## HiC_scaffold_3_24747014   "0/0"         "0/1"         NA           
## HiC_scaffold_3_27861792   "0/0"         NA            "0/0"        
## HiC_scaffold_3_28057869   NA            "0/0"         NA           
## HiC_scaffold_3_28441436   "1/1"         "0/1"         "0/0"        
## HiC_scaffold_3_28694380   "1|1"         NA            "0/1"        
## HiC_scaffold_3_31361023   "0/0"         "0/0"         "0/1"        
## HiC_scaffold_3_31960572   "1|1"         NA            "0/1"        
## HiC_scaffold_3_32157169   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_3_32159152   "1/1"         "0/0"         NA           
## HiC_scaffold_3_34124237   NA            "0/0"         "0/0"        
## HiC_scaffold_30_14199802  "0/1"         "1/1"         NA           
## HiC_scaffold_30_16052331  "1/1"         "1/1"         NA           
## HiC_scaffold_30_19914075  "1/1"         "1/1"         NA           
## HiC_scaffold_30_20688783  NA            "1/1"         NA           
## HiC_scaffold_30_21446076  NA            "0/0"         "0/0"        
## HiC_scaffold_30_21598563  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_30_22155728  NA            "0/0"         "0/0"        
## HiC_scaffold_31_687411    "0/1"         "0/0"         NA           
## HiC_scaffold_31_3224722   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_31_3574854   "0/1"         "0/1"         "0/0"        
## HiC_scaffold_31_5899551   "1|1"         NA            "1|1"        
## HiC_scaffold_31_5911491   "0/0"         "0/0"         NA           
## HiC_scaffold_31_6297680   "0/0"         "1/1"         "0/1"        
## HiC_scaffold_31_12394016  "0/0"         "1|1"         NA           
## HiC_scaffold_31_12394040  "1|1"         "0/0"         NA           
## HiC_scaffold_31_18612650  "1/1"         NA            "0/1"        
## HiC_scaffold_32_4446859   "0/1"         "1/1"         NA           
## HiC_scaffold_32_5274796   "0/0"         "0/0"         NA           
## HiC_scaffold_32_5275108   "1/1"         "0/0"         NA           
## HiC_scaffold_32_5282358   "1/1"         NA            NA           
## HiC_scaffold_32_5450203   "1|1"         NA            NA           
## HiC_scaffold_32_44200178  "0/0"         NA            NA           
## HiC_scaffold_33_638523    "1|1"         NA            "0/0"        
## HiC_scaffold_33_44489563  "0/0"         NA            NA           
## HiC_scaffold_33_44489988  NA            "1/1"         NA           
## HiC_scaffold_33_47080180  "0/0"         NA            NA           
## HiC_scaffold_33_47495907  "0/0"         NA            "0/1"        
## HiC_scaffold_33_51865876  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_34_1096982   "0/0"         "0/1"         NA           
## HiC_scaffold_34_6091943   "1|1"         "1|1"         "0/0"        
## HiC_scaffold_34_6100160   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_34_24368584  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_35_3233120   "0/0"         "0/1"         NA           
## HiC_scaffold_35_3253574   "0/1"         NA            NA           
## HiC_scaffold_35_5512296   "1/1"         "0/0"         NA           
## HiC_scaffold_35_15114788  "1/1"         "0/0"         NA           
## HiC_scaffold_35_21214090  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_35_21462564  "0/0"         NA            "1/1"        
## HiC_scaffold_35_22746783  "0/0"         NA            "0/0"        
## HiC_scaffold_35_22747085  "1|1"         "1|1"         NA           
## HiC_scaffold_35_23059580  "1/1"         "0/0"         NA           
## HiC_scaffold_35_23158882  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_35_23261143  NA            "1/1"         NA           
## HiC_scaffold_35_24403602  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_35_24403620  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_35_24993986  NA            "0/0"         "0/0"        
## HiC_scaffold_35_24993998  NA            NA            NA           
## HiC_scaffold_36_1538038   "0/0"         "0/1"         "0/1"        
## HiC_scaffold_36_2464728   "1/1"         "0|1"         "1|1"        
## HiC_scaffold_36_5489050   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_36_9673981   "0/0"         "1|1"         "0/1"        
## HiC_scaffold_36_9674127   "1/1"         "1/1"         "0/0"        
## HiC_scaffold_36_9674756   "1/1"         "1/1"         NA           
## HiC_scaffold_36_9676329   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_36_12304516  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_36_12515555  "0/0"         NA            "0/0"        
## HiC_scaffold_36_13092647  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_36_13766994  "0/1"         NA            "1/1"        
## HiC_scaffold_36_14567741  "0/1"         "0/1"         NA           
## HiC_scaffold_36_15530578  "1|1"         NA            "0/1"        
## HiC_scaffold_37_679894    "1/1"         "1/1"         NA           
## HiC_scaffold_37_916693    "0|1"         "1/1"         "1|1"        
## HiC_scaffold_37_928146    "0/1"         "0/1"         NA           
## HiC_scaffold_37_1256768   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_37_1270034   "0/1"         "1/1"         "0/0"        
## HiC_scaffold_37_1770997   "0/0"         NA            "0/0"        
## HiC_scaffold_37_1798298   "1/1"         "1/1"         "0/1"        
## HiC_scaffold_37_2010342   "1|1"         "0/0"         "1|1"        
## HiC_scaffold_37_2141526   "0/0"         NA            "0/0"        
## HiC_scaffold_37_3952190   NA            "0/0"         "0/0"        
## HiC_scaffold_37_3952215   NA            "0/0"         "0/0"        
## HiC_scaffold_37_9915037   "1/1"         "1/1"         "0/1"        
## HiC_scaffold_38_5383430   "1/1"         "1/1"         NA           
## HiC_scaffold_38_5668363   NA            "1/1"         NA           
## HiC_scaffold_38_5879849   NA            "0/1"         NA           
## HiC_scaffold_38_5880155   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_38_10612790  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_38_11940240  "0/0"         NA            NA           
## HiC_scaffold_38_12878826  "0|1"         "1|1"         "0/1"        
## HiC_scaffold_38_12959698  NA            NA            "0/0"        
## HiC_scaffold_38_13087368  "1/1"         "1/1"         NA           
## HiC_scaffold_38_13480648  "1|1"         "1/1"         "1|1"        
## HiC_scaffold_38_13965243  NA            NA            "1/1"        
## HiC_scaffold_38_14089955  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_38_14408072  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_38_14931216  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_38_14978356  "0|1"         "0/0"         NA           
## HiC_scaffold_38_14978367  "0|1"         "0/0"         NA           
## HiC_scaffold_38_15292863  "0/0"         "0/0"         NA           
## HiC_scaffold_38_15306135  "0/0"         "0/0"         NA           
## HiC_scaffold_38_16077506  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_38_16138965  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_38_16226040  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_39_1393769   NA            "0/0"         "0/0"        
## HiC_scaffold_39_2014970   "0/0"         "0/0"         NA           
## HiC_scaffold_39_2014982   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_39_2014985   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_39_2426443   "0/1"         "0/0"         "1/1"        
## HiC_scaffold_39_2485330   "0/0"         "1|1"         "0/0"        
## HiC_scaffold_39_3350506   "0/0"         "1|1"         "0/0"        
## HiC_scaffold_39_5897388   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_39_17631133  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_4_12107187   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_4_18241670   "1|1"         "1|1"         NA           
## HiC_scaffold_4_18241723   "1|1"         "1/1"         NA           
## HiC_scaffold_4_22418566   "0|1"         "0|1"         NA           
## HiC_scaffold_4_27899990   NA            "0/0"         NA           
## HiC_scaffold_4_35575118   "0/0"         "1/1"         "0/1"        
## HiC_scaffold_4_38000967   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_4_50654021   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_40_2243415   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_40_3000572   "1/1"         NA            "0/0"        
## HiC_scaffold_40_3014177   "1|1"         NA            "0/1"        
## HiC_scaffold_40_3027900   "0/0"         "1/1"         "0/1"        
## HiC_scaffold_40_3143834   "0/0"         "0/0"         "0/1"        
## HiC_scaffold_40_3843942   "0/0"         "1|1"         "0/0"        
## HiC_scaffold_40_3847620   "1|1"         NA            "0/0"        
## HiC_scaffold_40_3891007   "0/0"         "0|0"         "1/1"        
## HiC_scaffold_40_3920667   "2/2"         "2/2"         "2/2"        
## HiC_scaffold_40_4177963   "0/0"         NA            "0/0"        
## HiC_scaffold_40_4819107   "1/1"         "1/1"         NA           
## HiC_scaffold_40_4819834   "0/0"         "0/0"         NA           
## HiC_scaffold_40_5788271   "0/0"         "0/0"         NA           
## HiC_scaffold_40_5965269   NA            "0/0"         NA           
## HiC_scaffold_40_6204154   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_40_8387917   "1/1"         "0/0"         NA           
## HiC_scaffold_41_3235384   "2/2"         "0/0"         "0/0"        
## HiC_scaffold_41_3583000   "1/1"         "1/1"         "0/0"        
## HiC_scaffold_41_5334504   "1/1"         "0/0"         "1/1"        
## HiC_scaffold_41_5387631   "0/0"         "1|1"         "1|1"        
## HiC_scaffold_41_6423426   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_41_14359947  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_41_24007593  "0/0"         NA            "1|1"        
## HiC_scaffold_41_26225447  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_41_28626484  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_41_28660620  NA            NA            "0/0"        
## HiC_scaffold_41_31007688  "0/1"         "0/1"         "0/0"        
## HiC_scaffold_42_1131084   "0/0"         "0/0"         NA           
## HiC_scaffold_42_1818523   NA            "0/1"         NA           
## HiC_scaffold_42_2165002   "2/2"         "0/0"         NA           
## HiC_scaffold_42_2711332   "0/0"         "1|1"         "1|1"        
## HiC_scaffold_42_6142699   "0/0"         "1/1"         NA           
## HiC_scaffold_42_6744976   "0/0"         NA            NA           
## HiC_scaffold_42_8066919   "0/0"         "1|1"         "0/0"        
## HiC_scaffold_42_8068292   "0|1"         "1|1"         NA           
## HiC_scaffold_42_12487888  "0/0"         "0/0"         "0|1"        
## HiC_scaffold_42_41366687  "0/1"         "0|1"         "1/1"        
## HiC_scaffold_42_47313337  "0/0"         "0/0"         NA           
## HiC_scaffold_42_47313338  "0/0"         "0/0"         NA           
## HiC_scaffold_42_50784971  "1|1"         NA            NA           
## HiC_scaffold_42_50784977  "1|1"         NA            NA           
## HiC_scaffold_42_50784981  "0/0"         "0/0"         NA           
## HiC_scaffold_42_51916989  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_43_3842003   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_43_14140861  NA            NA            NA           
## HiC_scaffold_43_15053605  "1/1"         "1/1"         "1|1"        
## HiC_scaffold_43_17289945  "0/0"         "1|1"         NA           
## HiC_scaffold_43_29967704  "1/1"         "0/1"         "0/0"        
## HiC_scaffold_43_35745831  "0/0"         "0/1"         "0|1"        
## HiC_scaffold_43_37627949  "1/1"         "0|1"         NA           
## HiC_scaffold_43_37628126  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_43_44017118  NA            "0/0"         "0/0"        
## HiC_scaffold_43_55124138  NA            NA            "0/0"        
## HiC_scaffold_43_60107326  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_43_61359386  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_43_61702593  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_43_61702606  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_43_61702721  NA            "1|1"         "0/0"        
## HiC_scaffold_43_61702738  NA            "0/0"         "1/1"        
## HiC_scaffold_43_62511703  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_43_64069457  "0/0"         "0/0"         NA           
## HiC_scaffold_43_64577269  NA            NA            NA           
## HiC_scaffold_44_1920144   "0/0"         "1|1"         "1|1"        
## HiC_scaffold_44_2148035   "0/0"         "1/1"         "0/1"        
## HiC_scaffold_44_2568167   "0/0"         NA            NA           
## HiC_scaffold_45_4180070   "0/1"         "1/1"         "1/1"        
## HiC_scaffold_45_4797754   "2/2"         "0/0"         "1/2"        
## HiC_scaffold_45_5911123   "0|1"         "1|1"         "0/1"        
## HiC_scaffold_45_6958990   "1/1"         "0/1"         "1/1"        
## HiC_scaffold_45_8516216   NA            "1|1"         NA           
## HiC_scaffold_45_10191213  NA            "0/1"         "1/1"        
## HiC_scaffold_45_12005885  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_45_12006766  "1|1"         "0/0"         NA           
## HiC_scaffold_45_24736172  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_45_24739830  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_46_9691567   NA            "0/0"         "0/1"        
## HiC_scaffold_46_17380257  "0/0"         NA            NA           
## HiC_scaffold_46_18387147  NA            "0|1"         NA           
## HiC_scaffold_46_37092355  "0/0"         "0|1"         "0|1"        
## HiC_scaffold_46_39183624  NA            "1/1"         "0/0"        
## HiC_scaffold_46_39390547  "0/0"         NA            "0/0"        
## HiC_scaffold_46_42964941  NA            NA            "0/0"        
## HiC_scaffold_46_42986653  "1/1"         "0/1"         NA           
## HiC_scaffold_46_52074364  "1|1"         "1|1"         NA           
## HiC_scaffold_46_54255667  NA            "1/1"         "0/1"        
## HiC_scaffold_47_3750532   NA            "0/0"         "1/1"        
## HiC_scaffold_47_3751345   "0|1"         "0/0"         "0/0"        
## HiC_scaffold_47_15400639  "1|1"         NA            NA           
## HiC_scaffold_47_24072414  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_47_25273825  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_48_8752752   "0/0"         "0/1"         "0/0"        
## HiC_scaffold_48_10765920  "0/1"         NA            "1/1"        
## HiC_scaffold_48_16077918  "0|1"         "1|1"         NA           
## HiC_scaffold_48_16077940  "0|1"         "1|1"         NA           
## HiC_scaffold_48_16411609  "1/1"         NA            "1/1"        
## HiC_scaffold_48_19972580  "0/1"         "0/0"         "0/1"        
## HiC_scaffold_48_23493079  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_48_23597210  "1|1"         "0/1"         "1|1"        
## HiC_scaffold_48_24478493  "0/0"         NA            NA           
## HiC_scaffold_48_24881148  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_48_25865723  "1|1"         "1/1"         "1/1"        
## HiC_scaffold_48_25984068  "1|1"         "0/0"         NA           
## HiC_scaffold_48_25989079  "1/1"         "1/1"         NA           
## HiC_scaffold_48_30601375  NA            "0/0"         NA           
## HiC_scaffold_48_31662115  "0/1"         "1/1"         NA           
## HiC_scaffold_48_41971562  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_49_3392801   "0/0"         "1|1"         NA           
## HiC_scaffold_49_6101692   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_49_7996315   "1/1"         "0/0"         NA           
## HiC_scaffold_49_9470474   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_49_9886007   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_49_12592113  "0/0"         "0/0"         NA           
## HiC_scaffold_49_12741575  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_49_15135019  "1/1"         "1/1"         NA           
## HiC_scaffold_49_25906219  "0/0"         NA            NA           
## HiC_scaffold_49_26614199  "1/1"         "1/1"         NA           
## HiC_scaffold_49_26655554  "0/0"         "0|1"         NA           
## HiC_scaffold_49_37568341  "1/1"         NA            NA           
## HiC_scaffold_49_37568353  "1/1"         NA            NA           
## HiC_scaffold_49_40002255  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_49_40003229  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_49_42966376  NA            "1|1"         NA           
## HiC_scaffold_5_801252     NA            "1/1"         NA           
## HiC_scaffold_5_1446603    "1|1"         "0|1"         "0|1"        
## HiC_scaffold_5_1446611    "1|1"         "0|1"         "0|1"        
## HiC_scaffold_5_1530759    "0/1"         "1|1"         NA           
## HiC_scaffold_5_1539275    "0/0"         "0/0"         NA           
## HiC_scaffold_5_1789576    "0/0"         "0/0"         "0/0"        
## HiC_scaffold_5_1808197    "0/1"         "0/0"         "0/1"        
## HiC_scaffold_5_1808204    "0/1"         "1/1"         "0/1"        
## HiC_scaffold_5_1943895    "1|1"         "1|1"         "0/1"        
## HiC_scaffold_5_1944469    "1/1"         "1/1"         "0/1"        
## HiC_scaffold_5_2857283    "1/1"         "0/0"         "1/1"        
## HiC_scaffold_5_4061378    "0/0"         "0/1"         "0/0"        
## HiC_scaffold_5_4340647    "0/0"         "1|1"         "1|1"        
## HiC_scaffold_5_4435246    "1/1"         "0/1"         "0/1"        
## HiC_scaffold_5_8868783    "0/1"         NA            "1|1"        
## HiC_scaffold_50_4315969   "1/1"         "0/0"         NA           
## HiC_scaffold_50_11652296  "0/1"         "1|1"         "0/0"        
## HiC_scaffold_50_11657309  "0/0"         "0/0"         NA           
## HiC_scaffold_50_15521027  NA            NA            "0/0"        
## HiC_scaffold_50_21050962  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_50_23686202  "1|1"         "1|1"         "0/1"        
## HiC_scaffold_50_27393462  "1|1"         "0/0"         "0|1"        
## HiC_scaffold_50_42586883  "1/1"         "1/1"         NA           
## HiC_scaffold_50_45087211  NA            "1/1"         NA           
## HiC_scaffold_50_49796550  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_50_54383367  "0/0"         "0/0"         NA           
## HiC_scaffold_50_63318678  NA            "1/1"         "1/1"        
## HiC_scaffold_51_3521000   "1/1"         "0/0"         "1/1"        
## HiC_scaffold_51_4681905   "0/1"         "1/1"         NA           
## HiC_scaffold_51_6305599   "0/0"         "0/0"         NA           
## HiC_scaffold_51_8530818   "1|1"         "0/0"         NA           
## HiC_scaffold_51_11653312  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_51_13138547  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_51_14457091  "1|1"         "0/0"         NA           
## HiC_scaffold_51_15512668  "1/1"         "0/1"         NA           
## HiC_scaffold_51_17816346  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_51_19997934  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_51_19997936  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_51_20870773  "0/0"         "1|1"         "0/1"        
## HiC_scaffold_51_26660104  "0|1"         "0|1"         "0|1"        
## HiC_scaffold_51_40727521  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_51_40892841  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_51_41717519  "1/1"         "0/1"         "0/0"        
## HiC_scaffold_51_42547638  "1/1"         NA            "0/1"        
## HiC_scaffold_52_3335804   "0/0"         "1/1"         "1/1"        
## HiC_scaffold_52_4149130   "0/1"         NA            "0/0"        
## HiC_scaffold_52_6893679   "1|1"         "1/1"         NA           
## HiC_scaffold_52_13155416  "0|1"         "1/1"         "0/0"        
## HiC_scaffold_52_13155437  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_52_13155442  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_52_14885688  "0/1"         "0/1"         NA           
## HiC_scaffold_52_14895078  "1/1"         "0/0"         NA           
## HiC_scaffold_52_15141791  "1/1"         "0/1"         NA           
## HiC_scaffold_52_15743051  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_52_15760201  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_52_15834589  NA            NA            NA           
## HiC_scaffold_52_15841769  "0/1"         NA            "0/1"        
## HiC_scaffold_52_15862421  "0|1"         NA            "0/0"        
## HiC_scaffold_52_15970970  NA            "0/0"         "0/0"        
## HiC_scaffold_52_16275237  "1/1"         "0/1"         "0/0"        
## HiC_scaffold_52_16275240  "0/0"         "0|1"         NA           
## HiC_scaffold_52_16275290  "0/0"         "0/0"         NA           
## HiC_scaffold_52_16524164  "0|1"         NA            "0/0"        
## HiC_scaffold_52_16524572  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_52_16525647  "1/1"         "1|1"         NA           
## HiC_scaffold_52_16637047  "0/0"         "1|1"         NA           
## HiC_scaffold_52_17202127  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_52_17207724  NA            "1/1"         "0/0"        
## HiC_scaffold_52_17508820  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_52_17547593  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_52_17551239  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_52_17560696  "1|1"         NA            "0|1"        
## HiC_scaffold_52_17560699  "1|1"         NA            "0|1"        
## HiC_scaffold_52_17741250  "1/1"         NA            "0/0"        
## HiC_scaffold_52_17742260  NA            "1|1"         "1|1"        
## HiC_scaffold_52_18340578  NA            "1/1"         "1/1"        
## HiC_scaffold_52_18415911  NA            "1/1"         "0/0"        
## HiC_scaffold_52_22189517  "0/0"         NA            "0/0"        
## HiC_scaffold_52_22526592  "0/0"         "0/0"         NA           
## HiC_scaffold_52_26393471  NA            "0/0"         "0/0"        
## HiC_scaffold_52_26799380  "1/1"         NA            "0/0"        
## HiC_scaffold_52_31871931  NA            NA            NA           
## HiC_scaffold_52_31874283  "1/1"         NA            NA           
## HiC_scaffold_52_31874287  "0/0"         NA            "0/0"        
## HiC_scaffold_52_32161053  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_52_33165557  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_52_33897620  NA            "0/0"         "0/0"        
## HiC_scaffold_52_34763156  "0|1"         "1/1"         "0/1"        
## HiC_scaffold_52_34763171  "0/1"         "0/1"         "0/1"        
## HiC_scaffold_52_35174755  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_52_35608453  "0/1"         "0/1"         "0/0"        
## HiC_scaffold_52_35608470  "0/1"         "0/1"         "0/0"        
## HiC_scaffold_52_39464728  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_52_42141354  "0/1"         NA            "0/0"        
## HiC_scaffold_52_44675725  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_52_49935920  "1/1"         "0/0"         "1|1"        
## HiC_scaffold_53_21789524  "1/1"         "0/0"         NA           
## HiC_scaffold_53_25168042  "0/0"         "1/1"         NA           
## HiC_scaffold_53_26398989  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_53_26398992  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_53_26398994  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_53_26549665  "0/0"         "0/0"         NA           
## HiC_scaffold_53_29227676  NA            "0|1"         "0|1"        
## HiC_scaffold_53_31250349  "1/1"         NA            "1/1"        
## HiC_scaffold_54_530581    "1|1"         "1|1"         "1|1"        
## HiC_scaffold_54_794095    NA            "0/0"         "1|1"        
## HiC_scaffold_54_1171109   NA            "0|1"         NA           
## HiC_scaffold_54_1378956   "0/1"         "1/1"         "0/0"        
## HiC_scaffold_54_1380539   "1/1"         NA            NA           
## HiC_scaffold_54_3045015   "0/1"         "0/1"         "1/1"        
## HiC_scaffold_54_3185987   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_54_4401098   "0/0"         NA            NA           
## HiC_scaffold_54_5595903   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_54_5595921   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_54_5595928   "1|1"         "0/0"         NA           
## HiC_scaffold_54_5595949   NA            "1/1"         NA           
## HiC_scaffold_54_6649662   "0/0"         "0/1"         "1/1"        
## HiC_scaffold_54_8036734   "0/0"         "0|0"         "1|1"        
## HiC_scaffold_54_9206614   "0/0"         "0/1"         "0/0"        
## HiC_scaffold_54_35913192  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_54_35913282  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_54_35913283  "1|1"         "1|1"         "1/1"        
## HiC_scaffold_55_1260491   NA            "0/0"         NA           
## HiC_scaffold_55_3254027   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_55_3281985   "1|1"         "1|1"         "0|1"        
## HiC_scaffold_55_5409544   "0/0"         NA            "0/0"        
## HiC_scaffold_55_5411094   "1|1"         "1|1"         NA           
## HiC_scaffold_55_5411115   "1/1"         "1|1"         NA           
## HiC_scaffold_55_18121799  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_55_19605809  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_55_19605817  "1|1"         "1|1"         NA           
## HiC_scaffold_55_19605821  "1|1"         "1|1"         "0/1"        
## HiC_scaffold_55_20195204  NA            "0/1"         "0/0"        
## HiC_scaffold_55_20886967  "0/1"         "0/1"         "0/0"        
## HiC_scaffold_55_23222937  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_55_23626331  "0/1"         "0/0"         NA           
## HiC_scaffold_55_24539590  NA            "1/1"         "0/0"        
## HiC_scaffold_55_24585939  "0/0"         "0|1"         "1/1"        
## HiC_scaffold_55_34174151  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_56_17874332  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_56_18635259  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_56_23654344  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_56_35850533  "0/0"         NA            NA           
## HiC_scaffold_56_35850539  "0/0"         NA            NA           
## HiC_scaffold_56_40813556  NA            NA            NA           
## HiC_scaffold_56_53211633  NA            "0/1"         NA           
## HiC_scaffold_56_60070829  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_56_73286017  "0/0"         NA            "0/1"        
## HiC_scaffold_56_73829442  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_56_73829443  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_56_76060304  "0/0"         "0/0"         NA           
## HiC_scaffold_57_25306408  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_57_29222385  NA            "0/0"         "0/0"        
## HiC_scaffold_57_29592432  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_57_31472698  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_57_32371742  "0/1"         NA            NA           
## HiC_scaffold_57_36495072  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_57_37286264  NA            "1/1"         "0/0"        
## HiC_scaffold_57_38537415  "0/0"         NA            "0/1"        
## HiC_scaffold_57_45438854  "1|1"         NA            "1|2"        
## HiC_scaffold_57_52856874  NA            "0/0"         "0/1"        
## HiC_scaffold_57_53575355  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_57_55856783  "0/0"         NA            NA           
## HiC_scaffold_58_1362614   "1/1"         "1/1"         "0/1"        
## HiC_scaffold_58_1432845   NA            "1/1"         NA           
## HiC_scaffold_58_1541720   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_58_2777120   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_58_2973169   "1/1"         NA            "1/1"        
## HiC_scaffold_58_3243043   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_58_4035282   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_58_5442157   "0/1"         "1|1"         NA           
## HiC_scaffold_58_8004631   "0/0"         "0/0"         "0/1"        
## HiC_scaffold_58_8058998   "1|1"         "1|1"         "0/0"        
## HiC_scaffold_58_8932837   "0/0"         "1/1"         NA           
## HiC_scaffold_58_14814944  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_58_15639988  "0/0"         NA            NA           
## HiC_scaffold_58_15707198  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_58_15707258  NA            "1/1"         "0/0"        
## HiC_scaffold_58_15710623  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_58_19155063  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_58_20224050  "0/0"         "0/1"         NA           
## HiC_scaffold_58_38475355  "1/1"         "1/1"         NA           
## HiC_scaffold_59_3979055   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_59_5071810   "1|1"         NA            NA           
## HiC_scaffold_59_5349936   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_59_5350114   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_59_7738302   NA            "1/1"         NA           
## HiC_scaffold_59_7738351   "0/0"         NA            NA           
## HiC_scaffold_59_7958561   "1|1"         "0/0"         NA           
## HiC_scaffold_59_9273798   "0/0"         "0/0"         "0/1"        
## HiC_scaffold_59_50928099  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_59_52960060  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_6_10569023   "0/0"         NA            NA           
## HiC_scaffold_6_10711445   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_6_13209200   "1|1"         "1|1"         "0/1"        
## HiC_scaffold_6_13213107   NA            "1/1"         "0/0"        
## HiC_scaffold_6_13311684   "1/1"         "0/0"         "1|1"        
## HiC_scaffold_6_15670783   NA            "0/0"         "0/0"        
## HiC_scaffold_6_19111232   NA            "0/0"         NA           
## HiC_scaffold_6_32805498   "1/1"         "1/1"         NA           
## HiC_scaffold_6_38793174   "0/0"         "1|1"         NA           
## HiC_scaffold_6_41092101   NA            "1|1"         NA           
## HiC_scaffold_6_41342933   NA            "0/0"         NA           
## HiC_scaffold_6_47594508   "0/0"         "1/1"         NA           
## HiC_scaffold_60_70878     "1|1"         NA            "1|1"        
## HiC_scaffold_60_99549     "0/0"         "0/0"         NA           
## HiC_scaffold_60_201823    "1/1"         "1/1"         "1/1"        
## HiC_scaffold_60_712969    "1|1"         "1|1"         NA           
## HiC_scaffold_60_744783    "0/1"         "0/0"         NA           
## HiC_scaffold_60_744788    "0/1"         "1|1"         "0/0"        
## HiC_scaffold_60_22142128  "1/1"         "0/0"         NA           
## HiC_scaffold_60_27599770  "1/1"         "1/1"         NA           
## HiC_scaffold_60_30608878  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_60_32657324  "0/0"         "0/0"         NA           
## HiC_scaffold_60_32672580  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_60_38856893  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_60_39028335  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_60_40296869  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_60_42775723  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_60_44687906  "0/1"         "0/0"         NA           
## HiC_scaffold_60_44804601  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_60_53696867  "1|1"         "0|1"         "0/0"        
## HiC_scaffold_60_53696868  "1|1"         "0|1"         "0/0"        
## HiC_scaffold_60_60651515  "0/0"         "0/0"         NA           
## HiC_scaffold_60_70678462  "1/1"         "1|1"         NA           
## HiC_scaffold_61_2205328   "1|1"         "1/1"         "0/0"        
## HiC_scaffold_61_2491706   "1/1"         "1/1"         "1|1"        
## HiC_scaffold_61_4009916   "0|1"         "0/0"         "0/0"        
## HiC_scaffold_61_4062917   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_61_4122763   "1|1"         "1|1"         "0/0"        
## HiC_scaffold_61_4216461   "0/1"         "1/1"         "1/1"        
## HiC_scaffold_61_4325053   "0/0"         "0/1"         "1/1"        
## HiC_scaffold_61_9004838   "0|1"         "1/1"         "0/1"        
## HiC_scaffold_61_14635083  "0/1"         "1|1"         "1|1"        
## HiC_scaffold_62_1128608   "1/1"         "1/1"         NA           
## HiC_scaffold_62_11335200  NA            "0|0"         NA           
## HiC_scaffold_62_18828476  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_62_21548870  "0|1"         NA            NA           
## HiC_scaffold_62_23103274  "0/0"         "0/0"         NA           
## HiC_scaffold_62_25793456  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_62_25887474  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_62_28516096  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_62_28516099  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_62_28818725  "1|1"         NA            NA           
## HiC_scaffold_62_28818729  "0/0"         NA            NA           
## HiC_scaffold_62_45207353  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_63_3092269   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_63_3977940   NA            NA            "0/0"        
## HiC_scaffold_63_4084937   "0/0"         "1/1"         NA           
## HiC_scaffold_63_4196326   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_63_6262453   "0/1"         "0/1"         "0/0"        
## HiC_scaffold_63_6350204   "1/1"         NA            "1/1"        
## HiC_scaffold_63_6458794   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_64_9162978   NA            "0/0"         NA           
## HiC_scaffold_64_16876561  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_64_17543009  "1/1"         NA            "0/0"        
## HiC_scaffold_64_18925356  "0/1"         "0/1"         "1/1"        
## HiC_scaffold_64_19133050  "1|1"         NA            NA           
## HiC_scaffold_64_19627769  "1|1"         "1|1"         NA           
## HiC_scaffold_64_20477250  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_64_22816677  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_64_22954654  "0|1"         "1|1"         "1|1"        
## HiC_scaffold_64_22954658  "0|1"         "1|1"         "1|1"        
## HiC_scaffold_64_22954682  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_65_6829971   "0|1"         "0/1"         "0/0"        
## HiC_scaffold_65_8071102   "0/1"         "1/1"         "1|1"        
## HiC_scaffold_65_9023979   "0/0"         NA            "0/1"        
## HiC_scaffold_65_9839671   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_65_10404778  "0/0"         "1/1"         NA           
## HiC_scaffold_65_11327791  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_65_11332104  "1|1"         NA            "0/0"        
## HiC_scaffold_65_34823822  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_65_51418017  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_65_54053979  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_65_57110875  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_66_15615363  "0/0"         NA            "0|1"        
## HiC_scaffold_66_15672090  "1/1"         "0/0"         NA           
## HiC_scaffold_66_17903445  NA            NA            NA           
## HiC_scaffold_66_18298629  "0/0"         NA            "0/0"        
## HiC_scaffold_66_19730676  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_66_23688768  "0/1"         "0/0"         NA           
## HiC_scaffold_66_26614535  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_66_27445665  NA            "1/1"         "1|1"        
## HiC_scaffold_66_29457165  "1|1"         "1|1"         NA           
## HiC_scaffold_66_29457180  NA            "1/1"         "0/0"        
## HiC_scaffold_66_30116287  "1/1"         "1/1"         NA           
## HiC_scaffold_66_31603503  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_66_33261460  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_66_34138981  "0/0"         "1/1"         NA           
## HiC_scaffold_66_34139020  "1/1"         "0/0"         NA           
## HiC_scaffold_66_34142862  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_67_1404390   NA            "0/0"         NA           
## HiC_scaffold_67_28493665  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_67_30243885  "0/1"         "0/1"         "1/1"        
## HiC_scaffold_67_31511806  "0/0"         NA            NA           
## HiC_scaffold_67_34638092  "1/1"         NA            "1/1"        
## HiC_scaffold_67_37534720  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_67_39679546  "1/1"         NA            "1/1"        
## HiC_scaffold_67_39854918  "1|1"         NA            NA           
## HiC_scaffold_67_39860738  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_67_40331656  NA            "0/0"         "0/0"        
## HiC_scaffold_67_40824747  "1|1"         "1|1"         NA           
## HiC_scaffold_68_3438132   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_68_3438133   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_68_11206902  NA            "0/0"         "0/0"        
## HiC_scaffold_68_32770607  "0/0"         "1|1"         NA           
## HiC_scaffold_68_34016823  "0|2"         "2|2"         "0/2"        
## HiC_scaffold_68_34020019  "0/1"         NA            "0/1"        
## HiC_scaffold_68_40296057  "0/0"         NA            "0/0"        
## HiC_scaffold_68_40296059  "0/0"         NA            "0/0"        
## HiC_scaffold_68_65001879  "0/0"         "1|1"         NA           
## HiC_scaffold_69_23311147  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_69_27351303  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_69_29437208  "1/1"         "1/1"         NA           
## HiC_scaffold_69_33699381  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_69_40194698  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_69_48273575  "0/0"         NA            "1/1"        
## HiC_scaffold_69_48348026  NA            "1/1"         "0/1"        
## HiC_scaffold_69_48348034  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_69_49563252  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_69_49593952  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_69_49859037  "0/0"         NA            NA           
## HiC_scaffold_69_51271238  "0/0"         NA            NA           
## HiC_scaffold_69_51529836  "1/1"         "1/1"         NA           
## HiC_scaffold_69_57313650  "1/1"         "0/0"         NA           
## HiC_scaffold_69_57359194  "0/0"         NA            NA           
## HiC_scaffold_6951_523650  "0/0"         "0/1"         "1|1"        
## HiC_scaffold_6951_897126  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_6951_1134482 "0/0"         "1|1"         "1|1"        
## HiC_scaffold_6951_2484960 "0/1"         "0/0"         "1/1"        
## HiC_scaffold_6951_3301273 "1|1"         "0/0"         "1|1"        
## HiC_scaffold_6951_3314609 "1/1"         "1/1"         "1/1"        
## HiC_scaffold_6951_3945993 "0/1"         "0/0"         "0/0"        
## HiC_scaffold_6958_218293  "0/0"         NA            "0/0"        
## HiC_scaffold_6958_449143  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_7_351023     NA            "1/1"         NA           
## HiC_scaffold_7_488024     "0/0"         NA            "0/0"        
## HiC_scaffold_7_492663     NA            "1/1"         NA           
## HiC_scaffold_7_693567     "0/0"         "0/0"         "0/0"        
## HiC_scaffold_7_2379128    "0/0"         "1/1"         NA           
## HiC_scaffold_7_3087721    "0/1"         "1/1"         NA           
## HiC_scaffold_7_3394880    NA            "1/1"         NA           
## HiC_scaffold_7_22247106   "0/0"         "1|1"         "1|1"        
## HiC_scaffold_70_4632611   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_70_14042778  "1|1"         "1/1"         NA           
## HiC_scaffold_71_410844    "1/1"         "0/0"         NA           
## HiC_scaffold_71_1753451   "0/0"         "0/0"         NA           
## HiC_scaffold_71_2283682   NA            "0/0"         NA           
## HiC_scaffold_71_3439685   "0/0"         NA            "0/0"        
## HiC_scaffold_71_17850462  "0/0"         "1/1"         NA           
## HiC_scaffold_71_20588314  "0/0"         NA            NA           
## HiC_scaffold_71_25465351  NA            "1|1"         NA           
## HiC_scaffold_71_25465352  NA            "1|1"         NA           
## HiC_scaffold_71_26356062  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_72_11785096  NA            NA            NA           
## HiC_scaffold_72_17285854  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_72_23704999  "0/0"         "0/0"         NA           
## HiC_scaffold_72_24465318  NA            "1|1"         "0/0"        
## HiC_scaffold_72_30457277  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_72_32068649  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_72_35058295  "0/0"         NA            "0/0"        
## HiC_scaffold_72_36024997  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_72_37135067  "0/1"         NA            "1|1"        
## HiC_scaffold_72_38410141  "0/0"         NA            "1/1"        
## HiC_scaffold_72_38448056  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_72_41412511  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_73_2192629   "0/0"         "1|1"         "0/0"        
## HiC_scaffold_73_2920208   NA            "0/0"         "0/0"        
## HiC_scaffold_73_4522493   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_73_4748625   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_73_5839336   "1/1"         "1/1"         NA           
## HiC_scaffold_73_9338582   NA            "0/0"         "0/0"        
## HiC_scaffold_73_27393859  "0/1"         "0/0"         NA           
## HiC_scaffold_74_14235619  NA            "0/0"         "0/0"        
## HiC_scaffold_74_14515598  "1/1"         "1/1"         NA           
## HiC_scaffold_74_15116121  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_74_17233613  NA            "1/1"         NA           
## HiC_scaffold_74_17725340  "0/0"         NA            NA           
## HiC_scaffold_74_18418135  "0|1"         "0|1"         "1|1"        
## HiC_scaffold_74_18418138  "0|1"         "0|1"         "1|1"        
## HiC_scaffold_74_21254425  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_74_22261065  "1/1"         "0/0"         NA           
## HiC_scaffold_74_47132519  "1|1"         "0/0"         NA           
## HiC_scaffold_74_50979096  "1/1"         "0/0"         NA           
## HiC_scaffold_74_51060549  "1/1"         "0/0"         NA           
## HiC_scaffold_74_53256803  "0/0"         "0/1"         NA           
## HiC_scaffold_74_55464169  "1/1"         "0/1"         NA           
## HiC_scaffold_74_55515512  "0/1"         NA            NA           
## HiC_scaffold_74_55999260  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_74_57404902  "0/1"         "1|1"         "0/0"        
## HiC_scaffold_74_58181927  "0/0"         NA            NA           
## HiC_scaffold_74_58198600  "1/1"         NA            NA           
## HiC_scaffold_74_63060195  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_75_5345466   "0/0"         "1|1"         NA           
## HiC_scaffold_75_5346522   "0/1"         NA            "0/0"        
## HiC_scaffold_75_5346535   "1/1"         "1/1"         "0/0"        
## HiC_scaffold_75_9850973   "1|1"         "0/0"         NA           
## HiC_scaffold_76_27149820  "0|1"         "1/1"         NA           
## HiC_scaffold_76_31582908  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_76_31792815  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_76_35352820  "1/1"         "1|1"         NA           
## HiC_scaffold_76_57782171  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_76_59862401  NA            "1/1"         "0/0"        
## HiC_scaffold_76_61095594  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_76_65496128  "0/0"         NA            "0/0"        
## HiC_scaffold_76_68965847  NA            "1/1"         NA           
## HiC_scaffold_76_68966411  NA            NA            "0/0"        
## HiC_scaffold_76_69823482  "0|1"         "1|1"         NA           
## HiC_scaffold_76_73343841  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_77_3598274   "0/0"         "0/0"         NA           
## HiC_scaffold_77_6982137   NA            "0/0"         "0/0"        
## HiC_scaffold_77_11021994  NA            "1|1"         "1/1"        
## HiC_scaffold_77_13608165  NA            "0/0"         "1/1"        
## HiC_scaffold_77_16888594  "0/1"         "0/1"         NA           
## HiC_scaffold_77_16888623  "0/1"         "0/1"         NA           
## HiC_scaffold_77_16889448  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_77_39784685  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_77_44375866  "1/1"         "1|1"         "0/1"        
## HiC_scaffold_77_45385370  "0/1"         "0/1"         "1/1"        
## HiC_scaffold_78_5719919   "0/0"         "1/1"         "1/1"        
## HiC_scaffold_78_11353297  "1|1"         "0/1"         "0|1"        
## HiC_scaffold_78_27316392  "0/0"         NA            "0/0"        
## HiC_scaffold_78_48124809  NA            "0/0"         "0/0"        
## HiC_scaffold_78_48124826  "1/1"         "0/1"         NA           
## HiC_scaffold_78_48126176  "0/0"         "1/1"         NA           
## HiC_scaffold_78_48279096  "0/1"         "0/1"         NA           
## HiC_scaffold_78_48434558  "0/0"         NA            "0|1"        
## HiC_scaffold_78_49759181  "1|1"         NA            NA           
## HiC_scaffold_78_49759192  "1|1"         "0/0"         NA           
## HiC_scaffold_78_49759215  "1/1"         NA            NA           
## HiC_scaffold_78_51364025  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_78_55395445  "1/1"         "1/1"         NA           
## HiC_scaffold_78_59610866  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_78_62136661  NA            "0/0"         NA           
## HiC_scaffold_79_1643780   "0/0"         "0/1"         "0/1"        
## HiC_scaffold_79_2519178   "1/1"         NA            "1/1"        
## HiC_scaffold_79_2858100   "1/1"         NA            "0/0"        
## HiC_scaffold_79_3922454   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_79_4127878   "1|1"         "1/1"         "0/0"        
## HiC_scaffold_79_4543693   "1/1"         NA            "0/0"        
## HiC_scaffold_79_11507678  NA            "1/1"         "0/0"        
## HiC_scaffold_79_12618812  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_79_14185404  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_79_17120237  "0/0"         NA            NA           
## HiC_scaffold_79_17120254  "0/0"         NA            NA           
## HiC_scaffold_79_35551507  "0/0"         NA            "1|1"        
## HiC_scaffold_79_35551543  NA            "0/0"         NA           
## HiC_scaffold_79_38927423  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_79_42623307  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_79_43179786  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_79_43180099  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_79_43828078  "0/0"         "0/0"         NA           
## HiC_scaffold_79_43872513  "0/0"         "0/1"         NA           
## HiC_scaffold_79_44627215  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_79_50772769  NA            "0/0"         "0|1"        
## HiC_scaffold_79_55468575  "0/1"         NA            "0/0"        
## HiC_scaffold_79_55816114  "1/1"         "0/0"         NA           
## HiC_scaffold_79_59915784  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_79_60165298  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_79_60165305  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_79_69145556  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_79_70208305  "1|1"         "0|1"         "0/0"        
## HiC_scaffold_79_73412292  "0/0"         "0/0"         "2/2"        
## HiC_scaffold_79_73416663  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_79_73416688  "0/0"         NA            "0/0"        
## HiC_scaffold_79_76863102  "0/0"         "0/1"         NA           
## HiC_scaffold_79_81279649  "0|1"         "0/0"         NA           
## HiC_scaffold_79_81499990  NA            NA            "1/1"        
## HiC_scaffold_79_82319836  "0/0"         NA            "1|1"        
## HiC_scaffold_79_82319849  "0/0"         NA            "1|1"        
## HiC_scaffold_79_83163707  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_79_86283512  "0/1"         "1/1"         NA           
## HiC_scaffold_79_87123758  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_79_88362889  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_79_88599431  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_79_89322919  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_79_89331918  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_79_91340958  "0/1"         NA            NA           
## HiC_scaffold_8_13649836   "1|1"         "0|1"         "1/1"        
## HiC_scaffold_8_13650752   NA            "1|1"         "1|1"        
## HiC_scaffold_8_23818233   NA            NA            "0/0"        
## HiC_scaffold_8_24123972   NA            "1|1"         "1|1"        
## HiC_scaffold_8_24230791   "0/0"         "0/0"         NA           
## HiC_scaffold_8_24588423   "0/0"         "0/0"         NA           
## HiC_scaffold_8_25348483   "0/0"         "1/1"         NA           
## HiC_scaffold_8_25421933   "0/0"         "0/0"         NA           
## HiC_scaffold_8_25772942   "1/1"         NA            "0/1"        
## HiC_scaffold_8_26289589   "0/0"         "0/1"         "0/0"        
## HiC_scaffold_8_27602740   "0/1"         "0/1"         "0/1"        
## HiC_scaffold_8_28159063   "0/0"         "1/1"         "1/1"        
## HiC_scaffold_8_30829320   "0|1"         "0/0"         "0/0"        
## HiC_scaffold_8_31044084   NA            "1|1"         "1|1"        
## HiC_scaffold_8_31415507   "0|2"         NA            "0/0"        
## HiC_scaffold_8_32594682   "0/0"         "1|1"         NA           
## HiC_scaffold_80_3617847   "1/1"         "1/1"         NA           
## HiC_scaffold_80_5758183   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_80_6760006   "1|1"         NA            NA           
## HiC_scaffold_80_6760037   "1/1"         "1/1"         NA           
## HiC_scaffold_80_7772622   "1/1"         NA            NA           
## HiC_scaffold_80_7919533   NA            "2|2"         "1/1"        
## HiC_scaffold_80_8110052   "0/0"         "0/0"         NA           
## HiC_scaffold_80_8193366   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_80_8625784   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_80_8912846   "1/1"         "1/1"         "0/0"        
## HiC_scaffold_80_9544102   "0/1"         NA            NA           
## HiC_scaffold_80_10770701  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_80_11590146  "0/1"         NA            NA           
## HiC_scaffold_80_16953653  "0/0"         "0/0"         NA           
## HiC_scaffold_80_18938832  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_80_19015946  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_80_19404001  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_80_25346708  "0/0"         "1|1"         NA           
## HiC_scaffold_80_37479851  "0/0"         "0/0"         "0|1"        
## HiC_scaffold_80_37507516  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_81_1187192   "0/0"         "0/0"         NA           
## HiC_scaffold_81_2689826   "1|1"         "0/0"         "1|1"        
## HiC_scaffold_81_2690751   "0/0"         NA            "0/0"        
## HiC_scaffold_81_6614123   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_81_7836855   "1/1"         NA            "1/1"        
## HiC_scaffold_81_10334868  "1/1"         NA            "0/0"        
## HiC_scaffold_81_10458752  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_81_17515538  "1/1"         "1/1"         "1|1"        
## HiC_scaffold_81_40271282  "0/0"         "0/0"         NA           
## HiC_scaffold_81_40271294  "0|1"         "1/1"         NA           
## HiC_scaffold_81_41096427  "0/0"         "1/1"         "0|1"        
## HiC_scaffold_81_41096444  "0/0"         "1/1"         "0|1"        
## HiC_scaffold_81_43820595  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_81_43820732  NA            "1|1"         "0/0"        
## HiC_scaffold_81_43854278  "0/1"         "0/1"         NA           
## HiC_scaffold_81_44804862  "0/0"         "0/0"         NA           
## HiC_scaffold_81_45063428  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_81_45950590  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_81_46714752  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_81_46714759  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_81_47170397  "1|1"         "1|1"         NA           
## HiC_scaffold_81_47628201  "1|1"         NA            "0/0"        
## HiC_scaffold_81_48105216  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_81_48932070  "0/1"         "0/0"         NA           
## HiC_scaffold_81_54050146  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_82_5672063   "0/0"         "0/0"         "0|1"        
## HiC_scaffold_82_8796823   "0|1"         "0/1"         "0/1"        
## HiC_scaffold_82_13450959  "0/1"         NA            "1/1"        
## HiC_scaffold_82_26144442  NA            "0/0"         NA           
## HiC_scaffold_82_26147011  "0/0"         NA            NA           
## HiC_scaffold_82_28907834  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_82_34413793  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_82_34413800  NA            "1|1"         "0/0"        
## HiC_scaffold_82_36173035  NA            "1|1"         NA           
## HiC_scaffold_82_40539273  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_82_41470256  "1/1"         "1/1"         NA           
## HiC_scaffold_83_23993605  "0/1"         NA            "0/0"        
## HiC_scaffold_83_35035961  NA            "1/1"         NA           
## HiC_scaffold_83_43423618  "1|1"         NA            "1|1"        
## HiC_scaffold_83_46920654  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_83_46934197  "1|1"         "1/1"         "1/1"        
## HiC_scaffold_84_356301    "0/0"         "0/0"         "0/0"        
## HiC_scaffold_84_5761817   "0/0"         "0/1"         "0/0"        
## HiC_scaffold_84_5769022   NA            NA            "1|1"        
## HiC_scaffold_84_6288130   "0|0"         "1|1"         "0/0"        
## HiC_scaffold_84_6288141   "1/1"         "1|1"         "1/1"        
## HiC_scaffold_84_6288147   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_84_7069238   "0/0"         "0/0"         "0|1"        
## HiC_scaffold_84_9131309   NA            "0/0"         "1/1"        
## HiC_scaffold_84_10148442  "0/0"         NA            "0/0"        
## HiC_scaffold_84_14659391  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_84_16302752  NA            NA            "1/1"        
## HiC_scaffold_84_18463244  NA            NA            "1/1"        
## HiC_scaffold_84_22909575  NA            "0/0"         "1|1"        
## HiC_scaffold_84_29275266  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_84_31184610  "0/1"         NA            "1/1"        
## HiC_scaffold_84_33093169  NA            "0|1"         "0/0"        
## HiC_scaffold_84_37675180  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_84_39501814  "0/0"         "0|1"         "0/0"        
## HiC_scaffold_84_50169438  "1|1"         "0|1"         "0|1"        
## HiC_scaffold_84_50169445  "1|1"         "0|1"         "0|1"        
## HiC_scaffold_84_51231025  "0/0"         "1/1"         NA           
## HiC_scaffold_85_9792207   NA            NA            NA           
## HiC_scaffold_85_11784233  "0/0"         NA            "1/1"        
## HiC_scaffold_85_11911022  "1|1"         "1|1"         NA           
## HiC_scaffold_85_11911142  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_85_11913828  "0/0"         "1/1"         NA           
## HiC_scaffold_85_11913831  "1/1"         "0/0"         NA           
## HiC_scaffold_85_12353081  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_85_12414551  "0/0"         NA            "0/1"        
## HiC_scaffold_85_13043967  "0|1"         NA            NA           
## HiC_scaffold_85_13221888  NA            "1/1"         "0/0"        
## HiC_scaffold_85_27008863  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_85_28992264  "0|1"         "0|1"         "0/1"        
## HiC_scaffold_85_28992268  "0|1"         "0|1"         "0/1"        
## HiC_scaffold_85_64310850  "1|1"         "1|1"         NA           
## HiC_scaffold_85_65135112  NA            "0|2"         "0/2"        
## HiC_scaffold_85_65563529  NA            NA            NA           
## HiC_scaffold_86_1949664   "1|1"         NA            "0/0"        
## HiC_scaffold_86_5340423   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_86_5483991   "1|1"         "1|1"         "0/0"        
## HiC_scaffold_86_8928469   "0/0"         "0/0"         NA           
## HiC_scaffold_86_23727924  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_86_24825818  "1|1"         "1|1"         NA           
## HiC_scaffold_86_25333718  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_86_29668168  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_86_30914243  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_86_32040320  "1|1"         "1|1"         "0|1"        
## HiC_scaffold_86_32040329  "1|1"         "1|1"         "0|1"        
## HiC_scaffold_86_32125061  "1/1"         NA            "0/0"        
## HiC_scaffold_86_32144758  NA            "1/1"         "1/1"        
## HiC_scaffold_86_32153692  "1/1"         "1/1"         NA           
## HiC_scaffold_86_32534129  "1/1"         NA            "0/0"        
## HiC_scaffold_86_32605768  "0/0"         NA            "0/0"        
## HiC_scaffold_86_36355399  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_86_36357265  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_87_1253643   NA            "0/0"         "0/1"        
## HiC_scaffold_87_2137958   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_87_3980100   NA            "1/1"         "0/0"        
## HiC_scaffold_87_4395923   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_87_5489328   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_87_6300441   "1/1"         "0/0"         NA           
## HiC_scaffold_87_16306904  "0/0"         "1/1"         NA           
## HiC_scaffold_87_44780945  "0/0"         "0|1"         "0/0"        
## HiC_scaffold_88_5584327   "0/0"         "0/1"         "1/1"        
## HiC_scaffold_88_7104630   "1|1"         NA            "0|1"        
## HiC_scaffold_88_7104631   "1|1"         NA            "0/0"        
## HiC_scaffold_88_7104638   "0/0"         NA            "0|1"        
## HiC_scaffold_88_7104639   "0/0"         NA            "0/0"        
## HiC_scaffold_88_7104640   "0/0"         NA            "0|1"        
## HiC_scaffold_88_7479340   "0/0"         "0|1"         "1|1"        
## HiC_scaffold_88_8773607   NA            "0/0"         "0/0"        
## HiC_scaffold_88_9883678   "1|1"         "1|1"         "0/1"        
## HiC_scaffold_88_10878718  "0/0"         NA            "1/1"        
## HiC_scaffold_88_19365116  "1/1"         "0/0"         NA           
## HiC_scaffold_88_20477349  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_88_20557885  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_89_675045    "0/0"         NA            "0/0"        
## HiC_scaffold_89_2815845   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_89_2843940   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_89_3018830   "1/1"         NA            "1/1"        
## HiC_scaffold_89_13745506  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_89_30006907  NA            "0/1"         "1/1"        
## HiC_scaffold_89_36509388  "1|1"         "1|1"         "0/1"        
## HiC_scaffold_89_38703735  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_89_38764895  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_89_42052609  NA            NA            "1/1"        
## HiC_scaffold_89_42054991  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_89_44306958  NA            NA            "1|1"        
## HiC_scaffold_89_44338206  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_89_45298973  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_9_3529921    "1/1"         NA            NA           
## HiC_scaffold_9_5660454    "0/0"         "0/0"         "0/1"        
## HiC_scaffold_9_5660461    "1|1"         "0|1"         "1/1"        
## HiC_scaffold_9_5854070    "1/1"         "1/1"         "1/1"        
## HiC_scaffold_9_6142415    "0/0"         NA            "1|1"        
## HiC_scaffold_9_6142436    "0/0"         NA            "1|1"        
## HiC_scaffold_9_6143781    "0/1"         NA            "1/1"        
## HiC_scaffold_9_6654825    "0/1"         "1/1"         "0/0"        
## HiC_scaffold_9_7094545    "0/1"         "0/1"         "1|1"        
## HiC_scaffold_9_7100208    "0/0"         "0/0"         "1|1"        
## HiC_scaffold_9_7109988    NA            "0/1"         "1/1"        
## HiC_scaffold_9_7111922    NA            "1|1"         "1|1"        
## HiC_scaffold_9_8235781    "1/1"         "0/1"         "1/1"        
## HiC_scaffold_9_8279558    NA            "0/1"         "1/1"        
## HiC_scaffold_9_15679481   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_9_18082611   NA            "0/0"         "0/0"        
## HiC_scaffold_9_18090830   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_9_30240531   "1/1"         "0/1"         "1/1"        
## HiC_scaffold_90_10418696  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_90_11470224  NA            "1/1"         NA           
## HiC_scaffold_90_13593319  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_90_16260161  NA            "1/1"         NA           
## HiC_scaffold_90_22325499  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_90_23574204  "0/0"         NA            "0/0"        
## HiC_scaffold_90_23609908  "1|1"         "1|1"         NA           
## HiC_scaffold_90_23623078  "1|1"         "1|1"         NA           
## HiC_scaffold_90_23626883  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_90_23812663  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_90_25939283  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_90_25985714  NA            "1/1"         "0/0"        
## HiC_scaffold_90_30751272  "1/1"         NA            "0/0"        
## HiC_scaffold_90_31232025  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_90_31245699  NA            "1/1"         "0/0"        
## HiC_scaffold_90_31527975  NA            "0/0"         "1/1"        
## HiC_scaffold_90_31546172  "0/0"         NA            "0/1"        
## HiC_scaffold_90_38511996  "0/1"         "1|1"         "0/0"        
## HiC_scaffold_90_38511999  "0|1"         "1|1"         "0/0"        
## HiC_scaffold_90_38517279  "1/1"         "0/0"         NA           
## HiC_scaffold_90_40624104  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_91_5644765   "0|1"         "1|1"         NA           
## HiC_scaffold_91_5867214   NA            "0|1"         "1|1"        
## HiC_scaffold_91_5867226   NA            "0|1"         "1|1"        
## HiC_scaffold_91_7704263   "0/0"         "0/0"         "0|1"        
## HiC_scaffold_91_7871360   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_91_8538014   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_91_13230485  "1|1"         "0/0"         NA           
## HiC_scaffold_91_28696118  "0/0"         "1/1"         NA           
## HiC_scaffold_91_28696625  NA            "1|1"         NA           
## HiC_scaffold_91_42177482  "1|1"         "0/0"         NA           
## HiC_scaffold_91_46813640  "2|2"         "0/0"         "2|2"        
## HiC_scaffold_92_23783035  "0/0"         "0/0"         NA           
## HiC_scaffold_92_23783036  "0/0"         "0/0"         NA           
## HiC_scaffold_92_24712793  "0/1"         "1/1"         NA           
## HiC_scaffold_92_28698258  NA            "1|1"         NA           
## HiC_scaffold_92_40691582  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_92_43967712  "0/0"         NA            "0/1"        
## HiC_scaffold_92_47147572  "0|1"         "0/0"         "0/0"        
## HiC_scaffold_92_49042714  "0/0"         "0|1"         "1|1"        
## HiC_scaffold_92_49042715  "0/0"         "0|1"         "1|1"        
## HiC_scaffold_92_53634002  "0/0"         NA            NA           
## HiC_scaffold_92_58211868  "1|1"         "0/1"         "1|1"        
## HiC_scaffold_92_60114155  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_92_63603483  "0/0"         "0/0"         NA           
## HiC_scaffold_92_64797225  NA            "0/0"         "0/0"        
## HiC_scaffold_92_68367476  NA            "0/0"         "0/0"        
## HiC_scaffold_93_1912167   "0/0"         "0/1"         NA           
## HiC_scaffold_93_2485978   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_93_3227638   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_93_3227641   NA            "0/0"         "0/0"        
## HiC_scaffold_93_13971208  NA            "0/1"         NA           
## HiC_scaffold_93_13987080  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_93_21125468  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_93_21845293  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_93_21845310  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_93_21846342  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_93_21846356  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_93_22589723  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_93_22619278  "1/1"         NA            NA           
## HiC_scaffold_93_22631258  "1|1"         "0|1"         "1|1"        
## HiC_scaffold_93_22631266  "1|1"         "0|1"         "1|1"        
## HiC_scaffold_94_3110102   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_94_3205919   "0/0"         NA            "0/0"        
## HiC_scaffold_94_9023846   NA            "0/0"         "0/0"        
## HiC_scaffold_94_11572820  "1/1"         "0/1"         "0/0"        
## HiC_scaffold_94_12368532  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_94_42179418  "0/0"         "0/0"         NA           
## HiC_scaffold_94_42179519  NA            "1/1"         NA           
## HiC_scaffold_94_51646206  "0/0"         "2/2"         NA           
## HiC_scaffold_94_52781289  "1/1"         NA            "1/1"        
## HiC_scaffold_94_53790035  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_94_53792738  NA            "0/0"         "0/0"        
## HiC_scaffold_94_56768905  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_946_81276    NA            "0/1"         "1/1"        
## HiC_scaffold_95_3189690   "1/1"         "1/1"         NA           
## HiC_scaffold_95_4397298   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_95_9469157   "1|1"         NA            NA           
## HiC_scaffold_95_10641411  NA            "1/1"         "0/0"        
## HiC_scaffold_95_10949821  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_95_12993394  "1|1"         "0/0"         "1/1"        
## HiC_scaffold_95_15515793  "0|1"         "1|1"         NA           
## HiC_scaffold_95_15608785  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_95_15609137  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_95_16295316  NA            NA            "0/1"        
## HiC_scaffold_95_22656165  "0/0"         "0/0"         NA           
## HiC_scaffold_95_25885727  NA            "1/1"         "1/1"        
## HiC_scaffold_96_10460019  "0/0"         NA            "1/1"        
## HiC_scaffold_96_27155785  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_96_37939434  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_96_51115048  "0/0"         "1/1"         "1|1"        
## HiC_scaffold_96_51116511  "1/1"         "0/1"         NA           
## HiC_scaffold_96_51915040  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_96_52681287  "1/1"         "0/1"         "0/0"        
## HiC_scaffold_96_53276519  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_97_1736926   NA            NA            NA           
## HiC_scaffold_97_1736994   "0/1"         "1|1"         "0/0"        
## HiC_scaffold_97_3863543   "1/1"         "1/1"         NA           
## HiC_scaffold_97_4200445   NA            "0/0"         "0/0"        
## HiC_scaffold_97_4799162   "1/1"         "1/1"         NA           
## HiC_scaffold_97_5027892   NA            "0/0"         "0/1"        
## HiC_scaffold_97_8007933   "0|1"         "0/0"         NA           
## HiC_scaffold_97_17997210  NA            "0/0"         "0/0"        
## HiC_scaffold_97_18604647  NA            "1/1"         NA           
## HiC_scaffold_97_20239636  "0/0"         "0|1"         "0/0"        
## HiC_scaffold_98_15154096  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_98_22342667  "1|1"         "0/0"         "1/1"        
## HiC_scaffold_98_22634293  "1|1"         NA            NA           
## HiC_scaffold_98_22634294  "1|1"         NA            NA           
## HiC_scaffold_98_22721138  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_98_22869378  "0/1"         NA            NA           
## HiC_scaffold_98_24108405  "0/0"         NA            NA           
## HiC_scaffold_98_27359592  "0|1"         "0/0"         "1/1"        
## HiC_scaffold_98_28549834  "1/1"         "0/0"         NA           
## HiC_scaffold_98_28867520  "1/1"         "1|1"         "0/0"        
## HiC_scaffold_98_28867524  "1/2"         "1|1"         "0/0"        
## HiC_scaffold_98_29431717  "0/1"         "0/0"         "0/1"        
## HiC_scaffold_98_29675109  "1/1"         NA            "0/0"        
## HiC_scaffold_99_1163244   "1|1"         "1/1"         "0/0"        
## HiC_scaffold_99_1451611   "0/0"         "0/0"         NA           
## HiC_scaffold_99_2021961   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_99_5134392   "1/1"         NA            "1/1"        
## HiC_scaffold_99_5239109   "1/1"         "1/1"         "0/0"        
## HiC_scaffold_99_6917738   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_99_11221970  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_99_25982503  "0/1"         "1/1"         "1/1"        
##                           Tank_9_Crab_1 Tank_9_Crab_2 Tank_9_Crab_3
## HiC_scaffold_1_2523394    "1/1"         "0/0"         "1/1"        
## HiC_scaffold_1_2542157    "0/0"         "0/1"         "0/0"        
## HiC_scaffold_1_2647806    "1/1"         "0/0"         "1/1"        
## HiC_scaffold_1_2970226    "0/0"         "1|1"         "0/0"        
## HiC_scaffold_1_3329447    "0/0"         "0/0"         "0/0"        
## HiC_scaffold_1_3795100    "1|1"         "1|1"         NA           
## HiC_scaffold_10_2221345   "0/0"         NA            "0/0"        
## HiC_scaffold_10_2299490   "0/0"         NA            "1|1"        
## HiC_scaffold_10_2565301   "0/1"         "0/1"         "0/0"        
## HiC_scaffold_10_3864355   "1/1"         "0/0"         "1/1"        
## HiC_scaffold_10_4319900   "1|1"         NA            NA           
## HiC_scaffold_10_4319907   "1|1"         NA            NA           
## HiC_scaffold_10_5404579   NA            "0/0"         NA           
## HiC_scaffold_10_5843373   "0/0"         "0/0"         "0/1"        
## HiC_scaffold_100_854947   "0/0"         "1|1"         "0/0"        
## HiC_scaffold_100_1070817  "0/0"         NA            "0/0"        
## HiC_scaffold_100_2002094  "0/0"         "0/0"         "0|1"        
## HiC_scaffold_100_2002097  "0/0"         "0/0"         "0|1"        
## HiC_scaffold_100_2010331  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_100_5186498  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_100_5828477  NA            "1/1"         "0/1"        
## HiC_scaffold_100_6470419  "0/1"         "1|1"         "0|1"        
## HiC_scaffold_100_6739225  "0/1"         NA            "1/1"        
## HiC_scaffold_100_6739258  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_100_6739264  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_100_6907177  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_100_8384481  "1/1"         "0|1"         "0/0"        
## HiC_scaffold_100_8384495  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_100_9451470  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_100_10464574 "0/0"         "0/0"         "0/0"        
## HiC_scaffold_100_11934792 "1|1"         "0/0"         "0/0"        
## HiC_scaffold_100_11980177 "0/1"         NA            "1|1"        
## HiC_scaffold_100_18465760 "1|1"         NA            NA           
## HiC_scaffold_100_18465762 "1|1"         NA            NA           
## HiC_scaffold_100_18466205 "2/2"         "3|3"         "2|2"        
## HiC_scaffold_100_31738115 "0/0"         "1/1"         "0/1"        
## HiC_scaffold_100_44227362 "0/0"         NA            "1/1"        
## HiC_scaffold_101_12808961 "0/0"         "0|1"         "1|1"        
## HiC_scaffold_101_13897149 NA            "1/1"         "1/1"        
## HiC_scaffold_101_18337279 "0/0"         NA            "1/1"        
## HiC_scaffold_101_20800167 "1/1"         "1/1"         "1/1"        
## HiC_scaffold_102_2260041  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_102_8734519  NA            "0/0"         "0/1"        
## HiC_scaffold_102_10233999 NA            "1|1"         "1|1"        
## HiC_scaffold_102_11446042 "0/1"         NA            "0/0"        
## HiC_scaffold_102_15918694 "1/1"         "0/0"         "0/0"        
## HiC_scaffold_102_15935667 "0/0"         "0/0"         NA           
## HiC_scaffold_102_17442643 "0/0"         NA            "1/1"        
## HiC_scaffold_102_17608969 "0/0"         "0/0"         NA           
## HiC_scaffold_102_20180185 "0/1"         "0/0"         "1/1"        
## HiC_scaffold_102_24788723 NA            "0/0"         "0|1"        
## HiC_scaffold_102_25423729 "1|1"         "1|1"         "1|1"        
## HiC_scaffold_102_39755142 "0/0"         "1/1"         "1/1"        
## HiC_scaffold_102_52046978 "1/1"         "1/1"         "0/1"        
## HiC_scaffold_1027_34152   NA            NA            "0/0"        
## HiC_scaffold_103_601715   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_103_2891384  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_103_8191270  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_103_9521272  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_103_14768909 "0/0"         "0/0"         "0/0"        
## HiC_scaffold_103_19312119 "1|1"         "1|1"         "1|1"        
## HiC_scaffold_103_21284866 "0/1"         "1/1"         "1/1"        
## HiC_scaffold_103_31428453 "0/0"         "0|1"         "0/0"        
## HiC_scaffold_103_42567396 "0/0"         "0/1"         "0/0"        
## HiC_scaffold_103_45921571 "0|1"         "0/0"         "0|1"        
## HiC_scaffold_103_45921573 "0|1"         "0/0"         "0|1"        
## HiC_scaffold_103_49592022 "0/0"         NA            "1/1"        
## HiC_scaffold_103_49620132 "0/0"         "0/0"         "0/0"        
## HiC_scaffold_103_50440915 "0/0"         "0/0"         "1|1"        
## HiC_scaffold_103_51944137 NA            NA            "1/1"        
## HiC_scaffold_103_54308582 "0/0"         NA            "0/0"        
## HiC_scaffold_103_54424067 "0/0"         "0/0"         "0/0"        
## HiC_scaffold_103_56932900 "0/1"         "1/1"         "1/1"        
## HiC_scaffold_103_57470264 "0|1"         "0|1"         "0/0"        
## HiC_scaffold_104_7771140  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_104_9103028  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_104_10633168 "1/1"         "0/0"         "0/0"        
## HiC_scaffold_104_18917031 "0/1"         "1/1"         "0/0"        
## HiC_scaffold_104_20851902 "0/0"         "0/1"         "0/0"        
## HiC_scaffold_104_24451803 "0/0"         "0/0"         "0/1"        
## HiC_scaffold_104_28597688 "0/0"         "0|1"         "0/0"        
## HiC_scaffold_104_40927999 NA            NA            "0/0"        
## HiC_scaffold_104_46490074 "0|1"         "0/0"         "1/1"        
## HiC_scaffold_104_49759053 "0/0"         "0/0"         "0/0"        
## HiC_scaffold_104_57267896 NA            "0/1"         "1/1"        
## HiC_scaffold_104_62570010 "1/1"         "0/0"         "1/1"        
## HiC_scaffold_11_32804173  "0/1"         NA            "1/1"        
## HiC_scaffold_11_34516508  "1/1"         "1|1"         "1/1"        
## HiC_scaffold_11_35332996  "0/0"         "1/1"         NA           
## HiC_scaffold_11_35904027  "1/1"         "1|1"         "1/1"        
## HiC_scaffold_11_41539793  "0/1"         "0/0"         NA           
## HiC_scaffold_11_41604080  "1/1"         "1|1"         "1|1"        
## HiC_scaffold_11_42855323  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_11_45339409  "1/1"         NA            "0/0"        
## HiC_scaffold_11_45339410  "0/0"         NA            "1/1"        
## HiC_scaffold_11_47544035  "1/1"         NA            "1/1"        
## HiC_scaffold_12_7515164   "0/1"         "0/1"         "0/1"        
## HiC_scaffold_12_12640100  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_12_12826705  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_12_14899285  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_12_17465672  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_12_22770710  "0/0"         "0/0"         NA           
## HiC_scaffold_12_32318964  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_12_35136373  "0|1"         "1|1"         NA           
## HiC_scaffold_12_40687860  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_13_2938168   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_13_20350974  "0/0"         "1/1"         NA           
## HiC_scaffold_13_27759554  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_13_28146828  "0/0"         "0/0"         NA           
## HiC_scaffold_13_28146830  "0/0"         "0/0"         NA           
## HiC_scaffold_13_28925343  "2/2"         "1/1"         "1/1"        
## HiC_scaffold_13_31913129  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_13_32078924  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_13_33864805  "1/1"         "1/1"         "1|1"        
## HiC_scaffold_13_34892542  "0/0"         "1|1"         "1/1"        
## HiC_scaffold_13_34893103  "0|1"         "0/0"         "0/0"        
## HiC_scaffold_13_35762551  "0|1"         "1|1"         "1|1"        
## HiC_scaffold_13_35881745  "1/1"         "1/1"         "1|1"        
## HiC_scaffold_13_35881749  "0/1"         "0/1"         "1|1"        
## HiC_scaffold_14_3843214   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_14_25884262  NA            "0/0"         "2|2"        
## HiC_scaffold_14_27050415  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_14_27118495  NA            "1/1"         "0/0"        
## HiC_scaffold_14_27277222  "0|2"         "0|2"         "0/0"        
## HiC_scaffold_14_29215814  "0/1"         "1|1"         "1|1"        
## HiC_scaffold_15_2460398   NA            NA            "1|1"        
## HiC_scaffold_15_2462980   "0/1"         NA            "0/0"        
## HiC_scaffold_15_2467289   NA            "1/1"         "0/1"        
## HiC_scaffold_15_5669141   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_15_13700694  "0/0"         "0/0"         NA           
## HiC_scaffold_15_17825275  "0|1"         NA            "1|1"        
## HiC_scaffold_15_19938475  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_15_23865956  NA            "1|1"         "1|1"        
## HiC_scaffold_15_28837774  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_15_28837810  "0/1"         "0/1"         "0/1"        
## HiC_scaffold_15_28837823  "0|1"         "0/0"         "0/1"        
## HiC_scaffold_15_28837835  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_15_28837841  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_15_28837854  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_15_34827832  "0/0"         NA            "0/0"        
## HiC_scaffold_15_34893807  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_15_35327348  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_15_42161112  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_15_42164926  "0|1"         NA            "0/0"        
## HiC_scaffold_15_42164946  "0/1"         NA            "0/0"        
## HiC_scaffold_15_46289572  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_15_50591576  "1|1"         "0|1"         "0/0"        
## HiC_scaffold_15_50759128  "0/1"         NA            "0/0"        
## HiC_scaffold_15_51188336  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_15_54726640  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_15_54788235  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_15_56162375  "0|1"         "1|1"         "1|1"        
## HiC_scaffold_15_61091106  NA            "1/1"         "0/0"        
## HiC_scaffold_15_61464359  NA            "1/1"         "1/1"        
## HiC_scaffold_15_61510386  "1/1"         NA            NA           
## HiC_scaffold_15_62309788  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_15_62309793  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_15_62771254  "0/0"         "1/1"         NA           
## HiC_scaffold_15_63493927  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_15_64997502  "1/1"         NA            "1/1"        
## HiC_scaffold_15_65007865  "1/1"         NA            NA           
## HiC_scaffold_15_65007879  "0/0"         "0/0"         NA           
## HiC_scaffold_15_66038529  "0/0"         NA            "0/0"        
## HiC_scaffold_15_69811281  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_16_14205925  "0/1"         "1/1"         NA           
## HiC_scaffold_16_30404047  "0/1"         "0|1"         "0/1"        
## HiC_scaffold_16_57413288  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_16_63687578  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_16_74138787  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_16_74140106  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_16_76276015  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_17_11390873  "0/1"         "1|1"         "0|1"        
## HiC_scaffold_17_12551128  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_17_16615612  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_17_18838093  "1|1"         "0/1"         "0/0"        
## HiC_scaffold_17_22801072  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_17_23788599  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_17_29383895  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_17_29618771  "0/1"         NA            "0/1"        
## HiC_scaffold_17_29976139  "0/0"         NA            "0/0"        
## HiC_scaffold_17_31107213  "1/1"         NA            "1/1"        
## HiC_scaffold_17_32493792  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_17_33732050  NA            "1/1"         "0/1"        
## HiC_scaffold_17_33801314  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_17_34081889  "0/1"         "1/1"         "0/1"        
## HiC_scaffold_18_227565    "1/1"         "0/0"         "0/0"        
## HiC_scaffold_18_1213486   "0/0"         "1/1"         NA           
## HiC_scaffold_18_1701312   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_18_3506437   "0/1"         "1/1"         "0/0"        
## HiC_scaffold_18_6304978   "1/1"         "1/1"         NA           
## HiC_scaffold_18_6351493   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_18_6358009   NA            "1/1"         "1/1"        
## HiC_scaffold_18_10770701  "0/1"         "0/0"         "0/1"        
## HiC_scaffold_18_13342858  "1/1"         NA            NA           
## HiC_scaffold_18_20045832  "0/0"         NA            "0/0"        
## HiC_scaffold_18_22682683  NA            NA            "0/0"        
## HiC_scaffold_18_26337790  "1|1"         "1|1"         NA           
## HiC_scaffold_18_48929148  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_18_51490626  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_18_53723137  "1|1"         "0/1"         "0/0"        
## HiC_scaffold_18_54496637  "0/1"         "0|0"         "0/0"        
## HiC_scaffold_18_55294388  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_19_279726    "1/1"         "1/1"         "1/1"        
## HiC_scaffold_19_6426572   "1/1"         NA            "1/1"        
## HiC_scaffold_19_6575887   "1|1"         "0/0"         "1|1"        
## HiC_scaffold_19_7755254   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_19_9301421   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_19_9357388   "1|1"         "0/0"         "1|1"        
## HiC_scaffold_19_9778841   NA            "0/0"         "0/0"        
## HiC_scaffold_19_10928976  "0|1"         "1|1"         "0/0"        
## HiC_scaffold_19_10928980  "0|1"         "1|1"         "0/0"        
## HiC_scaffold_19_10928982  "0|1"         "0/0"         "1|1"        
## HiC_scaffold_19_11106347  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_19_11590139  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_19_11665300  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_19_14793640  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_19_22112743  "1|1"         NA            "1|1"        
## HiC_scaffold_19_25473671  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_19_25473692  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_19_28110829  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_19_28465002  "0/0"         NA            "0/1"        
## HiC_scaffold_19_28465167  "0/1"         "0/1"         "0/0"        
## HiC_scaffold_19_30106869  "1|1"         "1|1"         "0/1"        
## HiC_scaffold_19_52538858  "1/1"         NA            "1/1"        
## HiC_scaffold_19_52596196  "0/0"         NA            "1/1"        
## HiC_scaffold_19_53482993  "0/0"         "1|1"         "1/1"        
## HiC_scaffold_19_54312637  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_19_59345841  "0/0"         "0|1"         NA           
## HiC_scaffold_2_3296144    "1|1"         "1|1"         "1|1"        
## HiC_scaffold_2_3418589    "1/1"         "1/1"         "1/1"        
## HiC_scaffold_2_3864060    "1/1"         "1/1"         "1/1"        
## HiC_scaffold_2_4104755    "0|1"         "1|1"         "0/0"        
## HiC_scaffold_2_4104758    "0|1"         "1|1"         "0/0"        
## HiC_scaffold_2_8316721    "0|0"         "0|1"         "0/0"        
## HiC_scaffold_2_9098999    "0/1"         "0/0"         "0/0"        
## HiC_scaffold_2_10457537   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_2_19048125   "1/1"         "0/1"         "1/1"        
## HiC_scaffold_2_21748201   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_2_33187764   "0|1"         "1|1"         "0/0"        
## HiC_scaffold_2_33187770   "1|1"         "1|1"         "0/0"        
## HiC_scaffold_2_33187959   "0/1"         "1/1"         "0/0"        
## HiC_scaffold_2_41603929   "0|1"         "0/1"         "0/1"        
## HiC_scaffold_2_52233191   "0/1"         NA            "0/0"        
## HiC_scaffold_2_52400748   "0/0"         "1/1"         NA           
## HiC_scaffold_2_52403793   "0/1"         "1|1"         NA           
## HiC_scaffold_2_52799130   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_20_10332897  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_20_17198418  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_20_17915398  "0/0"         "1|1"         "0/1"        
## HiC_scaffold_20_18872955  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_20_19055301  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_20_19150094  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_20_20651022  "0/0"         NA            "0/0"        
## HiC_scaffold_20_22651296  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_21_2009156   "1|1"         "1|1"         "0|1"        
## HiC_scaffold_21_2435648   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_21_7164210   "0/0"         "0/0"         "0|1"        
## HiC_scaffold_21_9786512   "1/1"         "0/1"         "0/1"        
## HiC_scaffold_21_12424922  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_21_17966833  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_21_19025429  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_21_20058318  NA            "0/0"         "0|1"        
## HiC_scaffold_21_20562855  "0/0"         NA            "0|1"        
## HiC_scaffold_21_20661860  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_21_20895395  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_21_21158811  "1|1"         "2|2"         NA           
## HiC_scaffold_21_22250857  "0/1"         "0/1"         NA           
## HiC_scaffold_21_22250866  "0|1"         "0/0"         NA           
## HiC_scaffold_21_22257737  "1|1"         "1/1"         "1/1"        
## HiC_scaffold_21_22644667  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_21_22644673  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_21_22666888  "0/0"         NA            "0/0"        
## HiC_scaffold_21_23905416  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_21_23981651  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_21_24287068  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_21_30798434  "0/0"         NA            "0/0"        
## HiC_scaffold_21_35006232  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_21_35779294  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_22_124910    "0/1"         "0/0"         "0/0"        
## HiC_scaffold_22_751023    "0/1"         NA            "1|1"        
## HiC_scaffold_22_1042644   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_22_1044708   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_22_2174911   "1/1"         "0/0"         "1/1"        
## HiC_scaffold_22_3431122   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_22_3446787   "1|1"         "0/0"         "1|1"        
## HiC_scaffold_22_3451756   "1|1"         NA            "1|1"        
## HiC_scaffold_22_3720435   "0/0"         "0/1"         "1/1"        
## HiC_scaffold_22_4065466   "0|1"         NA            NA           
## HiC_scaffold_22_4739889   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_22_4918263   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_22_5750008   "1/1"         NA            "1/1"        
## HiC_scaffold_22_5769942   "0/0"         NA            "0/0"        
## HiC_scaffold_22_28264522  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_22_28265115  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_22_29205851  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_22_29822340  "1/1"         NA            "1/1"        
## HiC_scaffold_22_30797357  "0|1"         "0/0"         "1/1"        
## HiC_scaffold_22_32042610  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_23_11215327  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_23_27081333  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_23_28672255  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_23_29218828  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_23_32528768  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_23_32669383  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_23_33199663  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_23_33245843  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_23_40824545  "0|1"         "1|1"         "0/0"        
## HiC_scaffold_23_41504669  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_24_16622654  "0|1"         NA            "0/0"        
## HiC_scaffold_24_16622681  "0|1"         NA            "0/1"        
## HiC_scaffold_24_19851560  "0/1"         NA            "1|1"        
## HiC_scaffold_24_20590563  "1/1"         NA            "1/1"        
## HiC_scaffold_24_27745754  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_24_28763699  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_24_28763703  "1|1"         NA            "1|1"        
## HiC_scaffold_25_4135969   "1/1"         "0/1"         "0/0"        
## HiC_scaffold_25_4201677   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_25_5872831   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_25_6879627   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_25_8172813   "1/1"         "1|1"         "1/1"        
## HiC_scaffold_25_9969507   "0/1"         "1|1"         "0/1"        
## HiC_scaffold_25_10691336  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_25_21286462  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_26_4086662   "0/0"         NA            "1/1"        
## HiC_scaffold_26_7539671   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_26_8348511   "1/1"         NA            "0/0"        
## HiC_scaffold_26_9043748   "1|1"         NA            "1|1"        
## HiC_scaffold_26_9045655   "0/1"         "1|1"         NA           
## HiC_scaffold_26_11253181  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_26_17828344  "1/1"         NA            "1/1"        
## HiC_scaffold_26_17932520  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_26_17941459  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_26_17960877  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_26_18284041  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_26_18288701  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_26_18294422  "0/1"         "0/0"         NA           
## HiC_scaffold_26_21307365  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_26_22159924  "1/1"         "1/1"         NA           
## HiC_scaffold_26_22161535  "1/1"         "1/1"         "0/2"        
## HiC_scaffold_26_24794176  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_26_28538113  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_26_29031357  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_26_29163462  "0/1"         "0/1"         "0/0"        
## HiC_scaffold_26_42631018  NA            NA            "0/0"        
## HiC_scaffold_26_42634814  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_26_43483190  "0/0"         "0/1"         "1|1"        
## HiC_scaffold_26_49955889  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_26_58342510  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_27_1496120   "1|1"         "0/0"         "1|1"        
## HiC_scaffold_27_1947057   "0/0"         NA            "1/1"        
## HiC_scaffold_27_2359058   "0|1"         "0/1"         "0/0"        
## HiC_scaffold_27_2699645   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_27_4425475   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_27_7539469   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_27_7777122   "0/1"         NA            "0/0"        
## HiC_scaffold_27_16657070  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_27_24539255  "0|1"         "0/1"         "0|1"        
## HiC_scaffold_27_34642359  "1|1"         NA            "1|1"        
## HiC_scaffold_27_34647277  "0/0"         "2|2"         "0/0"        
## HiC_scaffold_27_35380535  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_27_35383230  "1|1"         "1|1"         "0/1"        
## HiC_scaffold_28_21261390  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_28_24490442  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_28_25601927  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_28_31793968  "1/1"         "0|1"         NA           
## HiC_scaffold_28_32126687  "0/0"         NA            "0/0"        
## HiC_scaffold_28_34779518  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_28_36042491  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_28_36692361  "0/1"         "0|1"         NA           
## HiC_scaffold_28_38672993  "0/0"         NA            "0/1"        
## HiC_scaffold_28_39640526  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_28_40169242  NA            "0/0"         "0/1"        
## HiC_scaffold_28_41059640  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_28_42514830  "1|1"         "1/1"         "0/1"        
## HiC_scaffold_28_42601570  NA            "1/1"         "1/1"        
## HiC_scaffold_28_42601585  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_28_43018803  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_28_43036165  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_29_344317    "0/0"         "1/1"         "0/1"        
## HiC_scaffold_29_3811176   "0/1"         "0/1"         "0|1"        
## HiC_scaffold_29_6073993   "1|1"         NA            "0/0"        
## HiC_scaffold_29_6415222   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_29_8224424   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_29_11153624  "1/1"         NA            "0/0"        
## HiC_scaffold_29_11153712  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_29_11167966  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_29_11491468  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_29_12103558  "0/1"         NA            "0/0"        
## HiC_scaffold_29_14279322  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_29_14913907  "0/1"         NA            "0/1"        
## HiC_scaffold_29_16378276  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_29_20635937  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_29_20636787  "0/1"         NA            "0/1"        
## HiC_scaffold_29_22560215  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_29_22561144  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_29_24017849  "0/0"         NA            "0/0"        
## HiC_scaffold_29_31603590  "1/1"         NA            "0/0"        
## HiC_scaffold_3_21670751   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_3_24747014   "0/0"         "0/1"         "0/1"        
## HiC_scaffold_3_27861792   "1/1"         "0/0"         "1/1"        
## HiC_scaffold_3_28057869   "0/1"         NA            "1/1"        
## HiC_scaffold_3_28441436   NA            "0/0"         "0/1"        
## HiC_scaffold_3_28694380   "0/0"         "1|1"         "0/0"        
## HiC_scaffold_3_31361023   "0/1"         "1/1"         "1/1"        
## HiC_scaffold_3_31960572   "1|1"         NA            "0/0"        
## HiC_scaffold_3_32157169   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_3_32159152   "0/0"         NA            "1/1"        
## HiC_scaffold_3_34124237   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_30_14199802  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_30_16052331  "1/1"         NA            "0/0"        
## HiC_scaffold_30_19914075  NA            "1/1"         "1/1"        
## HiC_scaffold_30_20688783  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_30_21446076  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_30_21598563  "1/1"         NA            "0/0"        
## HiC_scaffold_30_22155728  "1|1"         "1|1"         NA           
## HiC_scaffold_31_687411    "0/1"         "0/0"         "1/1"        
## HiC_scaffold_31_3224722   NA            "0/0"         NA           
## HiC_scaffold_31_3574854   "0/0"         "0/1"         "0/1"        
## HiC_scaffold_31_5899551   "1|1"         "1|1"         "1/1"        
## HiC_scaffold_31_5911491   "0|1"         "0/0"         "0/0"        
## HiC_scaffold_31_6297680   "1/1"         NA            "0/0"        
## HiC_scaffold_31_12394016  "0/0"         "0/1"         "1|1"        
## HiC_scaffold_31_12394040  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_31_18612650  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_32_4446859   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_32_5274796   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_32_5275108   "0/0"         "1/1"         "1/1"        
## HiC_scaffold_32_5282358   "0/1"         "0/0"         NA           
## HiC_scaffold_32_5450203   "1|1"         "1|1"         "0/0"        
## HiC_scaffold_32_44200178  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_33_638523    NA            NA            "0/0"        
## HiC_scaffold_33_44489563  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_33_44489988  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_33_47080180  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_33_47495907  NA            "0/0"         "1/1"        
## HiC_scaffold_33_51865876  "0/0"         NA            "0/0"        
## HiC_scaffold_34_1096982   "0/1"         "0/1"         "0/1"        
## HiC_scaffold_34_6091943   NA            "0/0"         "1|1"        
## HiC_scaffold_34_6100160   "1|1"         NA            "1|1"        
## HiC_scaffold_34_24368584  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_35_3233120   "1/1"         "1/1"         NA           
## HiC_scaffold_35_3253574   "0/1"         "0/1"         "0/1"        
## HiC_scaffold_35_5512296   "0/0"         "0/1"         "0/0"        
## HiC_scaffold_35_15114788  "0/1"         "0/0"         "0/1"        
## HiC_scaffold_35_21214090  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_35_21462564  "0/1"         NA            "0/1"        
## HiC_scaffold_35_22746783  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_35_22747085  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_35_23059580  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_35_23158882  "0/0"         NA            "0/1"        
## HiC_scaffold_35_23261143  "1/1"         NA            "0/0"        
## HiC_scaffold_35_24403602  NA            "1/1"         "0/0"        
## HiC_scaffold_35_24403620  NA            "1/1"         NA           
## HiC_scaffold_35_24993986  "0/1"         "0/1"         "1/1"        
## HiC_scaffold_35_24993998  "0/1"         "0|1"         "0/0"        
## HiC_scaffold_36_1538038   "0/0"         "0/1"         "0/1"        
## HiC_scaffold_36_2464728   "0|1"         NA            "0/0"        
## HiC_scaffold_36_5489050   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_36_9673981   NA            NA            "1|1"        
## HiC_scaffold_36_9674127   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_36_9674756   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_36_9676329   "1/1"         "0/1"         "1/1"        
## HiC_scaffold_36_12304516  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_36_12515555  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_36_13092647  "0/1"         "0|1"         "0/0"        
## HiC_scaffold_36_13766994  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_36_14567741  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_36_15530578  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_37_679894    "1/1"         "1/1"         "1/1"        
## HiC_scaffold_37_916693    "0/0"         "1|1"         "0/0"        
## HiC_scaffold_37_928146    "1/1"         "1/1"         NA           
## HiC_scaffold_37_1256768   "0/0"         NA            "0/0"        
## HiC_scaffold_37_1270034   "0/1"         "0/1"         "1/1"        
## HiC_scaffold_37_1770997   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_37_1798298   "0/0"         "0/0"         "0|1"        
## HiC_scaffold_37_2010342   "0/0"         "1|1"         "1|1"        
## HiC_scaffold_37_2141526   "0/0"         "0/1"         "0/0"        
## HiC_scaffold_37_3952190   "1|1"         "0/0"         "0|1"        
## HiC_scaffold_37_3952215   "1|1"         "0/0"         "0|1"        
## HiC_scaffold_37_9915037   "0/0"         "0/0"         "0/1"        
## HiC_scaffold_38_5383430   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_38_5668363   "0/1"         "0/0"         "0/1"        
## HiC_scaffold_38_5879849   "0|1"         "0/0"         "0/0"        
## HiC_scaffold_38_5880155   "0/0"         NA            "1/1"        
## HiC_scaffold_38_10612790  "1|1"         "0/0"         "1/1"        
## HiC_scaffold_38_11940240  "0/0"         "0/0"         "2|2"        
## HiC_scaffold_38_12878826  "1|1"         "0/0"         NA           
## HiC_scaffold_38_12959698  "1|1"         "1/1"         "0/0"        
## HiC_scaffold_38_13087368  "1/1"         NA            "1/1"        
## HiC_scaffold_38_13480648  "0/0"         "0|1"         "1|1"        
## HiC_scaffold_38_13965243  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_38_14089955  NA            NA            "1/1"        
## HiC_scaffold_38_14408072  "0|1"         "0/0"         "0|1"        
## HiC_scaffold_38_14931216  "0/1"         NA            "0|1"        
## HiC_scaffold_38_14978356  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_38_14978367  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_38_15292863  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_38_15306135  "0/1"         "1|1"         "1|1"        
## HiC_scaffold_38_16077506  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_38_16138965  "0/1"         NA            NA           
## HiC_scaffold_38_16226040  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_39_1393769   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_39_2014970   NA            "0/0"         "0/0"        
## HiC_scaffold_39_2014982   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_39_2014985   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_39_2426443   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_39_2485330   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_39_3350506   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_39_5897388   NA            "1|1"         "1|1"        
## HiC_scaffold_39_17631133  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_4_12107187   "0/1"         NA            "0/0"        
## HiC_scaffold_4_18241670   "1|1"         "1|1"         "0|1"        
## HiC_scaffold_4_18241723   "1|1"         "1|1"         "0|1"        
## HiC_scaffold_4_22418566   "0/0"         "1|1"         "1|1"        
## HiC_scaffold_4_27899990   "0/0"         "0/1"         "0/0"        
## HiC_scaffold_4_35575118   "0/0"         "0|0"         "0/1"        
## HiC_scaffold_4_38000967   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_4_50654021   "0/0"         "0/0"         "0/1"        
## HiC_scaffold_40_2243415   "0/0"         NA            "0/0"        
## HiC_scaffold_40_3000572   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_40_3014177   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_40_3027900   "1/1"         NA            "0/0"        
## HiC_scaffold_40_3143834   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_40_3843942   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_40_3847620   NA            "0/0"         "1|1"        
## HiC_scaffold_40_3891007   "0/0"         NA            "1/1"        
## HiC_scaffold_40_3920667   "0/0"         "2/2"         "2/2"        
## HiC_scaffold_40_4177963   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_40_4819107   "0/1"         "1/1"         NA           
## HiC_scaffold_40_4819834   "0|1"         "0/0"         "0|1"        
## HiC_scaffold_40_5788271   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_40_5965269   "0/1"         "0/0"         "1|1"        
## HiC_scaffold_40_6204154   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_40_8387917   "0/0"         "0/1"         "1/1"        
## HiC_scaffold_41_3235384   "0/0"         "0/2"         NA           
## HiC_scaffold_41_3583000   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_41_5334504   "1/1"         "0/0"         "1/1"        
## HiC_scaffold_41_5387631   "0/0"         NA            "0/0"        
## HiC_scaffold_41_6423426   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_41_14359947  "0/1"         "0/0"         "0/1"        
## HiC_scaffold_41_24007593  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_41_26225447  "0/0"         NA            NA           
## HiC_scaffold_41_28626484  "1/1"         NA            "1/1"        
## HiC_scaffold_41_28660620  "0|1"         "0/0"         "0/0"        
## HiC_scaffold_41_31007688  "0/1"         "1/1"         "0/1"        
## HiC_scaffold_42_1131084   "0/0"         NA            "0/1"        
## HiC_scaffold_42_1818523   "0/0"         "0/0"         NA           
## HiC_scaffold_42_2165002   "0/0"         "0/2"         NA           
## HiC_scaffold_42_2711332   "0/0"         NA            "0/1"        
## HiC_scaffold_42_6142699   "0/0"         "1/1"         "1/1"        
## HiC_scaffold_42_6744976   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_42_8066919   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_42_8068292   "0|1"         "0|1"         "0/1"        
## HiC_scaffold_42_12487888  "1|1"         "0/0"         "1/1"        
## HiC_scaffold_42_41366687  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_42_47313337  "0/0"         "0|1"         "2|2"        
## HiC_scaffold_42_47313338  "0/0"         "0|1"         "2|2"        
## HiC_scaffold_42_50784971  "0/0"         "0|1"         "1|1"        
## HiC_scaffold_42_50784977  "0/0"         "0|1"         "1|1"        
## HiC_scaffold_42_50784981  "1/1"         "0/1"         "0/0"        
## HiC_scaffold_42_51916989  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_43_3842003   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_43_14140861  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_43_15053605  "1/1"         NA            "1/1"        
## HiC_scaffold_43_17289945  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_43_29967704  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_43_35745831  "0/0"         "0|1"         "0/1"        
## HiC_scaffold_43_37627949  "1|1"         "1|1"         "0/1"        
## HiC_scaffold_43_37628126  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_43_44017118  "0/0"         NA            "0/1"        
## HiC_scaffold_43_55124138  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_43_60107326  "1|1"         NA            "0/0"        
## HiC_scaffold_43_61359386  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_43_61702593  "0/0"         NA            "1|1"        
## HiC_scaffold_43_61702606  "0/0"         NA            "1|1"        
## HiC_scaffold_43_61702721  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_43_61702738  "0/0"         NA            "1/1"        
## HiC_scaffold_43_62511703  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_43_64069457  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_43_64577269  "0/1"         NA            "0/0"        
## HiC_scaffold_44_1920144   "1|1"         "0/0"         "0/1"        
## HiC_scaffold_44_2148035   "1/1"         "1/1"         "0/1"        
## HiC_scaffold_44_2568167   "0/0"         "1/1"         "1/1"        
## HiC_scaffold_45_4180070   "1/1"         NA            "1/1"        
## HiC_scaffold_45_4797754   "2/2"         "0/2"         "0/2"        
## HiC_scaffold_45_5911123   NA            "1|1"         "0/0"        
## HiC_scaffold_45_6958990   "1/1"         "1/1"         "1|1"        
## HiC_scaffold_45_8516216   "0/0"         "1|1"         "1|1"        
## HiC_scaffold_45_10191213  "0/0"         "1/1"         "1|1"        
## HiC_scaffold_45_12005885  "0/1"         "0/0"         "0/1"        
## HiC_scaffold_45_12006766  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_45_24736172  "0/0"         "0/0"         NA           
## HiC_scaffold_45_24739830  "0/0"         "0/0"         "0|1"        
## HiC_scaffold_46_9691567   "1|1"         "0/1"         NA           
## HiC_scaffold_46_17380257  "0/1"         "1/1"         "0/1"        
## HiC_scaffold_46_18387147  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_46_37092355  "0|1"         NA            "0/0"        
## HiC_scaffold_46_39183624  "1|1"         NA            "0/0"        
## HiC_scaffold_46_39390547  "1/1"         "1/1"         NA           
## HiC_scaffold_46_42964941  "0/0"         NA            "1|1"        
## HiC_scaffold_46_42986653  NA            "0/0"         "1/1"        
## HiC_scaffold_46_52074364  NA            "1|1"         NA           
## HiC_scaffold_46_54255667  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_47_3750532   "1/1"         "0/1"         "0/0"        
## HiC_scaffold_47_3751345   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_47_15400639  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_47_24072414  "1|1"         NA            "1/1"        
## HiC_scaffold_47_25273825  "1|1"         NA            "0|1"        
## HiC_scaffold_48_8752752   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_48_10765920  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_48_16077918  NA            "1|1"         "1|1"        
## HiC_scaffold_48_16077940  NA            "1|1"         "1|1"        
## HiC_scaffold_48_16411609  "1/1"         NA            "0/0"        
## HiC_scaffold_48_19972580  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_48_23493079  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_48_23597210  NA            "1|1"         "0/0"        
## HiC_scaffold_48_24478493  "1/1"         "0/1"         "0/1"        
## HiC_scaffold_48_24881148  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_48_25865723  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_48_25984068  "0|1"         NA            "0|1"        
## HiC_scaffold_48_25989079  "0|1"         "0/1"         "0/0"        
## HiC_scaffold_48_30601375  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_48_31662115  "1/1"         NA            "1/1"        
## HiC_scaffold_48_41971562  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_49_3392801   "1|1"         "0|1"         "0/0"        
## HiC_scaffold_49_6101692   "0/0"         NA            "1/1"        
## HiC_scaffold_49_7996315   "1/1"         "0/1"         "0/0"        
## HiC_scaffold_49_9470474   "0/1"         "0/1"         "1/1"        
## HiC_scaffold_49_9886007   "0/1"         "0/0"         "1/1"        
## HiC_scaffold_49_12592113  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_49_12741575  "1/1"         "0/1"         NA           
## HiC_scaffold_49_15135019  "0/0"         NA            "1|1"        
## HiC_scaffold_49_25906219  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_49_26614199  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_49_26655554  "0/1"         "0/1"         "0/0"        
## HiC_scaffold_49_37568341  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_49_37568353  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_49_40002255  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_49_40003229  "0/1"         "0/0"         "1|1"        
## HiC_scaffold_49_42966376  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_5_801252     "0/1"         "1/1"         "0/0"        
## HiC_scaffold_5_1446603    "0|1"         NA            "0|1"        
## HiC_scaffold_5_1446611    "0|1"         NA            "0|1"        
## HiC_scaffold_5_1530759    "0/0"         "0/0"         "0/0"        
## HiC_scaffold_5_1539275    "0/0"         "0/0"         NA           
## HiC_scaffold_5_1789576    "0/0"         "1|1"         "1|1"        
## HiC_scaffold_5_1808197    "0/1"         NA            NA           
## HiC_scaffold_5_1808204    "0/1"         "0/0"         NA           
## HiC_scaffold_5_1943895    "1|1"         "0/0"         "1|1"        
## HiC_scaffold_5_1944469    "1/1"         "1/1"         "0/0"        
## HiC_scaffold_5_2857283    "0/0"         "0/0"         "1/1"        
## HiC_scaffold_5_4061378    "0/0"         NA            "0/0"        
## HiC_scaffold_5_4340647    "0/1"         "1|1"         "0|1"        
## HiC_scaffold_5_4435246    "1/1"         NA            "0/1"        
## HiC_scaffold_5_8868783    "0/1"         "0/0"         "1/1"        
## HiC_scaffold_50_4315969   "1/1"         "1/1"         "1|1"        
## HiC_scaffold_50_11652296  "1/1"         "1|1"         "1|1"        
## HiC_scaffold_50_11657309  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_50_15521027  "0/1"         "0/0"         "0/1"        
## HiC_scaffold_50_21050962  "0/1"         "0/0"         "0/1"        
## HiC_scaffold_50_23686202  "0|0"         "1|1"         "0/0"        
## HiC_scaffold_50_27393462  NA            "0/0"         "0/0"        
## HiC_scaffold_50_42586883  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_50_45087211  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_50_49796550  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_50_54383367  "0/0"         "1|1"         NA           
## HiC_scaffold_50_63318678  "1/1"         NA            "0/1"        
## HiC_scaffold_51_3521000   "0/0"         "1/1"         "1/1"        
## HiC_scaffold_51_4681905   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_51_6305599   "0/0"         NA            "0/0"        
## HiC_scaffold_51_8530818   NA            "1|1"         "0/0"        
## HiC_scaffold_51_11653312  "0/0"         NA            "0/0"        
## HiC_scaffold_51_13138547  "1/1"         NA            "1/1"        
## HiC_scaffold_51_14457091  "1|1"         "0/0"         NA           
## HiC_scaffold_51_15512668  "0/0"         NA            "1/1"        
## HiC_scaffold_51_17816346  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_51_19997934  NA            NA            "0/0"        
## HiC_scaffold_51_19997936  NA            NA            "0/0"        
## HiC_scaffold_51_20870773  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_51_26660104  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_51_40727521  NA            "0/0"         "0/0"        
## HiC_scaffold_51_40892841  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_51_41717519  NA            "1/1"         "0/1"        
## HiC_scaffold_51_42547638  "0/1"         NA            "1/1"        
## HiC_scaffold_52_3335804   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_52_4149130   "0/1"         NA            "0/0"        
## HiC_scaffold_52_6893679   "1|1"         "1|1"         "0/1"        
## HiC_scaffold_52_13155416  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_52_13155437  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_52_13155442  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_52_14885688  NA            "0/0"         "0/1"        
## HiC_scaffold_52_14895078  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_52_15141791  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_52_15743051  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_52_15760201  "0/0"         NA            "0/0"        
## HiC_scaffold_52_15834589  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_52_15841769  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_52_15862421  "0/1"         NA            "0/0"        
## HiC_scaffold_52_15970970  "0/0"         NA            "1/2"        
## HiC_scaffold_52_16275237  "1/1"         NA            "0/1"        
## HiC_scaffold_52_16275240  "0/0"         "0/0"         "0|1"        
## HiC_scaffold_52_16275290  "0/1"         "0/0"         "0/1"        
## HiC_scaffold_52_16524164  NA            "0/0"         NA           
## HiC_scaffold_52_16524572  "1/1"         "1/1"         NA           
## HiC_scaffold_52_16525647  "1/1"         NA            NA           
## HiC_scaffold_52_16637047  "0/1"         "0|1"         "0/0"        
## HiC_scaffold_52_17202127  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_52_17207724  "0/1"         "0/1"         "0/1"        
## HiC_scaffold_52_17508820  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_52_17547593  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_52_17551239  "0/0"         NA            "0/1"        
## HiC_scaffold_52_17560696  "0/0"         NA            "0/0"        
## HiC_scaffold_52_17560699  "0/0"         NA            "0/0"        
## HiC_scaffold_52_17741250  NA            "0/0"         "1/1"        
## HiC_scaffold_52_17742260  "0|1"         "0/0"         "0/0"        
## HiC_scaffold_52_18340578  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_52_18415911  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_52_22189517  "1/1"         "0/1"         "0/0"        
## HiC_scaffold_52_22526592  "0/1"         "0/0"         "0/1"        
## HiC_scaffold_52_26393471  "0/1"         "0/1"         "0/1"        
## HiC_scaffold_52_26799380  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_52_31871931  "0/1"         "0/0"         "0/1"        
## HiC_scaffold_52_31874283  "1|1"         NA            "1/1"        
## HiC_scaffold_52_31874287  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_52_32161053  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_52_33165557  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_52_33897620  "0/1"         "0/0"         "0/1"        
## HiC_scaffold_52_34763156  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_52_34763171  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_52_35174755  "0/1"         "1|1"         "0|1"        
## HiC_scaffold_52_35608453  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_52_35608470  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_52_39464728  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_52_42141354  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_52_44675725  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_52_49935920  "0/0"         "1/1"         NA           
## HiC_scaffold_53_21789524  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_53_25168042  "0|1"         "0/0"         "1/1"        
## HiC_scaffold_53_26398989  NA            "0/0"         "0|1"        
## HiC_scaffold_53_26398992  NA            "0/0"         "0|1"        
## HiC_scaffold_53_26398994  NA            "0/0"         "0|1"        
## HiC_scaffold_53_26549665  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_53_29227676  "0|1"         "1|1"         "0|1"        
## HiC_scaffold_53_31250349  "1/1"         NA            "0/1"        
## HiC_scaffold_54_530581    "1|1"         "1|1"         "1|1"        
## HiC_scaffold_54_794095    "0/0"         "1|1"         "1|1"        
## HiC_scaffold_54_1171109   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_54_1378956   NA            "0/0"         "0/0"        
## HiC_scaffold_54_1380539   "0/0"         "1/1"         "1/1"        
## HiC_scaffold_54_3045015   "0/1"         "1/1"         "1/1"        
## HiC_scaffold_54_3185987   "1/1"         NA            NA           
## HiC_scaffold_54_4401098   "1|1"         "1|1"         "0/0"        
## HiC_scaffold_54_5595903   "0/1"         NA            "1/1"        
## HiC_scaffold_54_5595921   "0/1"         "0/0"         "0/1"        
## HiC_scaffold_54_5595928   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_54_5595949   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_54_6649662   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_54_8036734   "1|1"         "1|1"         NA           
## HiC_scaffold_54_9206614   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_54_35913192  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_54_35913282  "0/1"         "0|1"         "0/0"        
## HiC_scaffold_54_35913283  "0/1"         "0|1"         "0/0"        
## HiC_scaffold_55_1260491   "1/1"         "0/0"         "0/1"        
## HiC_scaffold_55_3254027   "0/0"         "0/1"         "0/0"        
## HiC_scaffold_55_3281985   "1|1"         "0/1"         "0/0"        
## HiC_scaffold_55_5409544   "0/1"         "1/1"         "0/0"        
## HiC_scaffold_55_5411094   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_55_5411115   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_55_18121799  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_55_19605809  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_55_19605817  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_55_19605821  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_55_20195204  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_55_20886967  "0/0"         "0/0"         NA           
## HiC_scaffold_55_23222937  "1/1"         NA            "0/0"        
## HiC_scaffold_55_23626331  "0/0"         "0/1"         "1/1"        
## HiC_scaffold_55_24539590  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_55_24585939  "0/1"         "1/1"         NA           
## HiC_scaffold_55_34174151  "0/1"         "0/1"         "0/1"        
## HiC_scaffold_56_17874332  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_56_18635259  NA            "0/0"         "1|1"        
## HiC_scaffold_56_23654344  "1/1"         "0/0"         NA           
## HiC_scaffold_56_35850533  "0/1"         "1/1"         "0/1"        
## HiC_scaffold_56_35850539  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_56_40813556  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_56_53211633  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_56_60070829  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_56_73286017  "1|1"         "0/1"         "0/1"        
## HiC_scaffold_56_73829442  "0/0"         "2/2"         "0|1"        
## HiC_scaffold_56_73829443  "0/0"         "2/2"         "0|1"        
## HiC_scaffold_56_76060304  "0/1"         "0/0"         "1|1"        
## HiC_scaffold_57_25306408  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_57_29222385  "0/0"         "0/1"         "0|1"        
## HiC_scaffold_57_29592432  "1/1"         "0/0"         NA           
## HiC_scaffold_57_31472698  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_57_32371742  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_57_36495072  "0/0"         NA            "0/1"        
## HiC_scaffold_57_37286264  NA            "1/1"         "1/1"        
## HiC_scaffold_57_38537415  NA            "0/1"         "0|1"        
## HiC_scaffold_57_45438854  "0/0"         "2|2"         "2|2"        
## HiC_scaffold_57_52856874  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_57_53575355  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_57_55856783  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_58_1362614   "1/1"         "1/1"         NA           
## HiC_scaffold_58_1432845   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_58_1541720   "0/0"         "2/2"         NA           
## HiC_scaffold_58_2777120   "1/1"         "0/0"         NA           
## HiC_scaffold_58_2973169   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_58_3243043   "0/0"         NA            NA           
## HiC_scaffold_58_4035282   "0/0"         NA            "0/1"        
## HiC_scaffold_58_5442157   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_58_8004631   "0/0"         NA            "0/0"        
## HiC_scaffold_58_8058998   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_58_8932837   "0/0"         "1/1"         "0/1"        
## HiC_scaffold_58_14814944  "0/0"         NA            "1/1"        
## HiC_scaffold_58_15639988  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_58_15707198  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_58_15707258  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_58_15710623  "1/1"         NA            "0/0"        
## HiC_scaffold_58_19155063  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_58_20224050  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_58_38475355  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_59_3979055   "0/1"         NA            "1/1"        
## HiC_scaffold_59_5071810   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_59_5349936   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_59_5350114   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_59_7738302   "0/1"         "1/1"         "0/0"        
## HiC_scaffold_59_7738351   "0/1"         "1/1"         "0/0"        
## HiC_scaffold_59_7958561   "1|1"         "0/0"         "1|1"        
## HiC_scaffold_59_9273798   NA            "1/1"         "0/0"        
## HiC_scaffold_59_50928099  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_59_52960060  "0/0"         "0/0"         NA           
## HiC_scaffold_6_10569023   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_6_10711445   "1/1"         "0/1"         NA           
## HiC_scaffold_6_13209200   "0/1"         NA            "0/0"        
## HiC_scaffold_6_13213107   "0/0"         NA            "0/1"        
## HiC_scaffold_6_13311684   "0/0"         "1|1"         "0/0"        
## HiC_scaffold_6_15670783   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_6_19111232   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_6_32805498   "1/1"         "0/1"         "1/1"        
## HiC_scaffold_6_38793174   "0|1"         "0/0"         "0/0"        
## HiC_scaffold_6_41092101   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_6_41342933   "1/1"         "0/1"         "0/1"        
## HiC_scaffold_6_47594508   "1/1"         "0/1"         "1/1"        
## HiC_scaffold_60_70878     "1|1"         "1|1"         "1|1"        
## HiC_scaffold_60_99549     "0/0"         "1|1"         "0/0"        
## HiC_scaffold_60_201823    "0/1"         "1/1"         "1/1"        
## HiC_scaffold_60_712969    "1|1"         "0/0"         "0|1"        
## HiC_scaffold_60_744783    "1/1"         NA            "0/1"        
## HiC_scaffold_60_744788    "0|1"         "0/0"         "0/1"        
## HiC_scaffold_60_22142128  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_60_27599770  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_60_30608878  "1|1"         "1/1"         "1|1"        
## HiC_scaffold_60_32657324  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_60_32672580  "1/1"         NA            NA           
## HiC_scaffold_60_38856893  "0/0"         "1/1"         NA           
## HiC_scaffold_60_39028335  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_60_40296869  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_60_42775723  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_60_44687906  "1/1"         "0/1"         "0/0"        
## HiC_scaffold_60_44804601  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_60_53696867  "0|1"         "0/0"         "0/0"        
## HiC_scaffold_60_53696868  "0|1"         "0/0"         "0/0"        
## HiC_scaffold_60_60651515  "0|0"         NA            "0/0"        
## HiC_scaffold_60_70678462  "1|1"         NA            "0/1"        
## HiC_scaffold_61_2205328   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_61_2491706   "1/1"         "1/1"         NA           
## HiC_scaffold_61_4009916   "0/2"         "2/2"         NA           
## HiC_scaffold_61_4062917   "0/0"         "1/1"         NA           
## HiC_scaffold_61_4122763   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_61_4216461   "1/1"         "0/0"         NA           
## HiC_scaffold_61_4325053   "0/1"         NA            "1/1"        
## HiC_scaffold_61_9004838   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_61_14635083  "1|1"         NA            "0/1"        
## HiC_scaffold_62_1128608   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_62_11335200  "0|1"         "0/0"         NA           
## HiC_scaffold_62_18828476  "1/1"         NA            "1/1"        
## HiC_scaffold_62_21548870  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_62_23103274  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_62_25793456  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_62_25887474  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_62_28516096  "0|1"         "1|1"         NA           
## HiC_scaffold_62_28516099  "0|1"         "1|1"         NA           
## HiC_scaffold_62_28818725  "0/0"         "0/0"         NA           
## HiC_scaffold_62_28818729  "1/1"         "1/1"         NA           
## HiC_scaffold_62_45207353  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_63_3092269   "1/1"         NA            "1/1"        
## HiC_scaffold_63_3977940   "1/1"         NA            "0/0"        
## HiC_scaffold_63_4084937   "0/1"         "0/0"         NA           
## HiC_scaffold_63_4196326   "0|1"         "0/0"         "1|1"        
## HiC_scaffold_63_6262453   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_63_6350204   "1/1"         NA            "0/0"        
## HiC_scaffold_63_6458794   "0/1"         NA            "0/0"        
## HiC_scaffold_64_9162978   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_64_16876561  "0/0"         "0/0"         "0|1"        
## HiC_scaffold_64_17543009  "0/0"         "0/1"         NA           
## HiC_scaffold_64_18925356  "1/1"         "0/1"         "0/1"        
## HiC_scaffold_64_19133050  "0|1"         "0/0"         "0/0"        
## HiC_scaffold_64_19627769  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_64_20477250  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_64_22816677  "0/0"         NA            "0/0"        
## HiC_scaffold_64_22954654  "0|1"         "0|1"         "0|0"        
## HiC_scaffold_64_22954658  "0|1"         "0|1"         "0|0"        
## HiC_scaffold_64_22954682  "1/1"         "0/1"         "0/0"        
## HiC_scaffold_65_6829971   "1/1"         "0/0"         "0/0"        
## HiC_scaffold_65_8071102   "0/0"         "1/1"         "0/1"        
## HiC_scaffold_65_9023979   "0/0"         "0/0"         "0/1"        
## HiC_scaffold_65_9839671   "1/1"         "0/1"         "0/0"        
## HiC_scaffold_65_10404778  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_65_11327791  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_65_11332104  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_65_34823822  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_65_51418017  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_65_54053979  "1|1"         NA            "1|1"        
## HiC_scaffold_65_57110875  "0|1"         "0/0"         "0/0"        
## HiC_scaffold_66_15615363  NA            "0/1"         "0/0"        
## HiC_scaffold_66_15672090  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_66_17903445  "0|1"         "0/0"         "0|1"        
## HiC_scaffold_66_18298629  "1|1"         NA            "0/0"        
## HiC_scaffold_66_19730676  "0/0"         "1|1"         NA           
## HiC_scaffold_66_23688768  "0/1"         NA            "0/1"        
## HiC_scaffold_66_26614535  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_66_27445665  "0/1"         "0|1"         "1|1"        
## HiC_scaffold_66_29457165  "0/1"         "1/1"         "0/1"        
## HiC_scaffold_66_29457180  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_66_30116287  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_66_31603503  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_66_33261460  "0/1"         NA            "0/1"        
## HiC_scaffold_66_34138981  "0/1"         "0/1"         "0/0"        
## HiC_scaffold_66_34139020  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_66_34142862  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_67_1404390   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_67_28493665  "1/1"         NA            "0/0"        
## HiC_scaffold_67_30243885  "1/1"         NA            "0/0"        
## HiC_scaffold_67_31511806  "0/0"         "1|1"         "1|1"        
## HiC_scaffold_67_34638092  "1/1"         "1/1"         NA           
## HiC_scaffold_67_37534720  "1/1"         NA            "1/1"        
## HiC_scaffold_67_39679546  "0/1"         NA            "1/1"        
## HiC_scaffold_67_39854918  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_67_39860738  "0/1"         "1/1"         "0/1"        
## HiC_scaffold_67_40331656  "0/0"         NA            NA           
## HiC_scaffold_67_40824747  "1|1"         "0/1"         "1|1"        
## HiC_scaffold_68_3438132   "0|1"         "1|1"         "1|1"        
## HiC_scaffold_68_3438133   "0|1"         "1|1"         "1|1"        
## HiC_scaffold_68_11206902  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_68_32770607  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_68_34016823  "1/1"         "0/2"         "0/0"        
## HiC_scaffold_68_34020019  "1/1"         NA            "0/1"        
## HiC_scaffold_68_40296057  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_68_40296059  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_68_65001879  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_69_23311147  "1|1"         "0/0"         "1/1"        
## HiC_scaffold_69_27351303  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_69_29437208  "0|1"         "0/0"         NA           
## HiC_scaffold_69_33699381  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_69_40194698  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_69_48273575  NA            NA            "1/1"        
## HiC_scaffold_69_48348026  "0/1"         "0/1"         "0|1"        
## HiC_scaffold_69_48348034  "0/1"         "0/0"         "0/1"        
## HiC_scaffold_69_49563252  "0/0"         "1/1"         NA           
## HiC_scaffold_69_49593952  "1/1"         NA            "0/0"        
## HiC_scaffold_69_49859037  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_69_51271238  "0/1"         "0/0"         "0/1"        
## HiC_scaffold_69_51529836  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_69_57313650  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_69_57359194  "1/1"         "0/0"         "1|1"        
## HiC_scaffold_6951_523650  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_6951_897126  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_6951_1134482 "1|1"         "0/1"         "0/0"        
## HiC_scaffold_6951_2484960 "0/0"         NA            NA           
## HiC_scaffold_6951_3301273 NA            "1|1"         "1|1"        
## HiC_scaffold_6951_3314609 "0/0"         "0/0"         "0/0"        
## HiC_scaffold_6951_3945993 "0/0"         "0/0"         "0/0"        
## HiC_scaffold_6958_218293  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_6958_449143  "0/1"         "0/1"         "1/1"        
## HiC_scaffold_7_351023     "1/1"         "1/1"         "1/1"        
## HiC_scaffold_7_488024     "0/0"         "0/0"         "0/0"        
## HiC_scaffold_7_492663     "1/1"         "1/1"         "1|1"        
## HiC_scaffold_7_693567     "0|1"         "1|1"         "1|1"        
## HiC_scaffold_7_2379128    "0/0"         "0/0"         "1/1"        
## HiC_scaffold_7_3087721    "1/1"         "1/1"         "0/1"        
## HiC_scaffold_7_3394880    "0/1"         "0/0"         "0/0"        
## HiC_scaffold_7_22247106   "0/1"         "1|1"         "0/1"        
## HiC_scaffold_70_4632611   NA            "1|1"         "1|1"        
## HiC_scaffold_70_14042778  "1/1"         NA            "0/0"        
## HiC_scaffold_71_410844    "0|1"         "0/0"         "0/0"        
## HiC_scaffold_71_1753451   NA            "0/0"         "0/0"        
## HiC_scaffold_71_2283682   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_71_3439685   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_71_17850462  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_71_20588314  "0/1"         NA            "0/0"        
## HiC_scaffold_71_25465351  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_71_25465352  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_71_26356062  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_72_11785096  "0/1"         "0/1"         "0/0"        
## HiC_scaffold_72_17285854  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_72_23704999  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_72_24465318  "0|1"         NA            "1|1"        
## HiC_scaffold_72_30457277  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_72_32068649  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_72_35058295  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_72_36024997  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_72_37135067  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_72_38410141  NA            "0/0"         "0/1"        
## HiC_scaffold_72_38448056  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_72_41412511  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_73_2192629   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_73_2920208   "0/0"         "0/1"         "0/0"        
## HiC_scaffold_73_4522493   "1/1"         "1/1"         NA           
## HiC_scaffold_73_4748625   "1/1"         "1|1"         "0/1"        
## HiC_scaffold_73_5839336   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_73_9338582   "0/0"         NA            "0/0"        
## HiC_scaffold_73_27393859  "0/1"         NA            "0/0"        
## HiC_scaffold_74_14235619  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_74_14515598  "1/1"         NA            "1/1"        
## HiC_scaffold_74_15116121  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_74_17233613  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_74_17725340  "1|1"         "0/0"         "0|1"        
## HiC_scaffold_74_18418135  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_74_18418138  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_74_21254425  NA            NA            "1/1"        
## HiC_scaffold_74_22261065  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_74_47132519  "1|1"         NA            "0/1"        
## HiC_scaffold_74_50979096  NA            "0/0"         "0/1"        
## HiC_scaffold_74_51060549  NA            "1/1"         "0/1"        
## HiC_scaffold_74_53256803  NA            "0/0"         "1/1"        
## HiC_scaffold_74_55464169  "0/1"         "0/0"         "0/1"        
## HiC_scaffold_74_55515512  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_74_55999260  "0/0"         "1|1"         NA           
## HiC_scaffold_74_57404902  "1/1"         "1|1"         "0/0"        
## HiC_scaffold_74_58181927  "0|1"         "1|1"         "1|1"        
## HiC_scaffold_74_58198600  "0/1"         NA            "0/0"        
## HiC_scaffold_74_63060195  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_75_5345466   NA            "0/0"         "1|1"        
## HiC_scaffold_75_5346522   "0/0"         "0/1"         "0/0"        
## HiC_scaffold_75_5346535   "0/0"         NA            "0/0"        
## HiC_scaffold_75_9850973   "1|1"         "1/1"         "1/1"        
## HiC_scaffold_76_27149820  "0/1"         "0/1"         "0/0"        
## HiC_scaffold_76_31582908  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_76_31792815  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_76_35352820  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_76_57782171  "1/1"         NA            "0/1"        
## HiC_scaffold_76_59862401  NA            "0/0"         "0|1"        
## HiC_scaffold_76_61095594  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_76_65496128  "0/0"         NA            "1/1"        
## HiC_scaffold_76_68965847  "0/1"         NA            "0/1"        
## HiC_scaffold_76_68966411  "0/0"         "0/0"         NA           
## HiC_scaffold_76_69823482  "0|1"         "0/0"         "0/0"        
## HiC_scaffold_76_73343841  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_77_3598274   "0/0"         "0|1"         "1|1"        
## HiC_scaffold_77_6982137   "1/1"         NA            "1/1"        
## HiC_scaffold_77_11021994  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_77_13608165  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_77_16888594  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_77_16888623  "0/1"         "0/1"         "1/1"        
## HiC_scaffold_77_16889448  "0|1"         "0|1"         "0/1"        
## HiC_scaffold_77_39784685  "1|1"         "0/1"         "0/1"        
## HiC_scaffold_77_44375866  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_77_45385370  "0/1"         "0/1"         NA           
## HiC_scaffold_78_5719919   "0/1"         "0/0"         "1/1"        
## HiC_scaffold_78_11353297  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_78_27316392  "1/1"         NA            "0/0"        
## HiC_scaffold_78_48124809  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_78_48124826  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_78_48126176  "0/1"         "0/0"         NA           
## HiC_scaffold_78_48279096  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_78_48434558  "0|1"         "1|1"         "0/0"        
## HiC_scaffold_78_49759181  "0/1"         "0/1"         "1|1"        
## HiC_scaffold_78_49759192  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_78_49759215  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_78_51364025  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_78_55395445  NA            NA            NA           
## HiC_scaffold_78_59610866  "0/0"         "1/1"         "0/1"        
## HiC_scaffold_78_62136661  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_79_1643780   "0/1"         "0/0"         "0|1"        
## HiC_scaffold_79_2519178   "1/1"         "1|1"         "1/1"        
## HiC_scaffold_79_2858100   "0|1"         "0/0"         "0/0"        
## HiC_scaffold_79_3922454   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_79_4127878   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_79_4543693   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_79_11507678  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_79_12618812  "0/0"         NA            "0/0"        
## HiC_scaffold_79_14185404  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_79_17120237  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_79_17120254  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_79_35551507  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_79_35551543  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_79_38927423  NA            "0/0"         "0/0"        
## HiC_scaffold_79_42623307  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_79_43179786  "1|1"         "0/0"         "0|1"        
## HiC_scaffold_79_43180099  "1/1"         NA            "0/1"        
## HiC_scaffold_79_43828078  "0/0"         NA            "0|1"        
## HiC_scaffold_79_43872513  "0/0"         NA            "0/1"        
## HiC_scaffold_79_44627215  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_79_50772769  "0/1"         "1|1"         "0/1"        
## HiC_scaffold_79_55468575  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_79_55816114  "1/1"         "0/0"         "0/1"        
## HiC_scaffold_79_59915784  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_79_60165298  "0|1"         NA            "0|1"        
## HiC_scaffold_79_60165305  NA            NA            "0|1"        
## HiC_scaffold_79_69145556  "0/2"         "0/0"         "0/0"        
## HiC_scaffold_79_70208305  "0|1"         NA            "1|1"        
## HiC_scaffold_79_73412292  "1/1"         NA            "0/0"        
## HiC_scaffold_79_73416663  "0/0"         NA            "1|1"        
## HiC_scaffold_79_73416688  "1|1"         NA            "0/0"        
## HiC_scaffold_79_76863102  "0/1"         "0/1"         "0/0"        
## HiC_scaffold_79_81279649  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_79_81499990  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_79_82319836  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_79_82319849  "1|1"         "1|1"         "1/1"        
## HiC_scaffold_79_83163707  NA            "0/0"         "1/1"        
## HiC_scaffold_79_86283512  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_79_87123758  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_79_88362889  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_79_88599431  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_79_89322919  "1/1"         NA            "0/0"        
## HiC_scaffold_79_89331918  "1|1"         "0/1"         "0/0"        
## HiC_scaffold_79_91340958  "0|1"         "0/0"         NA           
## HiC_scaffold_8_13649836   "1/1"         NA            "0|1"        
## HiC_scaffold_8_13650752   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_8_23818233   "1/1"         "1/1"         "0/1"        
## HiC_scaffold_8_24123972   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_8_24230791   "1|1"         NA            "0/1"        
## HiC_scaffold_8_24588423   NA            "0/0"         "0/0"        
## HiC_scaffold_8_25348483   "1/1"         "0/0"         "1/1"        
## HiC_scaffold_8_25421933   "1/1"         NA            "0/0"        
## HiC_scaffold_8_25772942   "0/1"         "0/1"         "0/0"        
## HiC_scaffold_8_26289589   "0/0"         "1|1"         NA           
## HiC_scaffold_8_27602740   NA            NA            "0/0"        
## HiC_scaffold_8_28159063   "0/1"         NA            "1/1"        
## HiC_scaffold_8_30829320   "0/0"         "0/0"         "1/1"        
## HiC_scaffold_8_31044084   "0/0"         "1|1"         "0/0"        
## HiC_scaffold_8_31415507   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_8_32594682   NA            NA            "0|1"        
## HiC_scaffold_80_3617847   "0|1"         "0|1"         "1/1"        
## HiC_scaffold_80_5758183   "1|1"         "0/0"         "1|1"        
## HiC_scaffold_80_6760006   "1|1"         "0|1"         "0|1"        
## HiC_scaffold_80_6760037   "1/1"         "0/0"         "0/1"        
## HiC_scaffold_80_7772622   "0|1"         "1/1"         "1/1"        
## HiC_scaffold_80_7919533   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_80_8110052   NA            "1|1"         "0/0"        
## HiC_scaffold_80_8193366   "0/0"         NA            "0/1"        
## HiC_scaffold_80_8625784   "0/0"         "1/1"         NA           
## HiC_scaffold_80_8912846   "0/0"         "1/1"         "1/1"        
## HiC_scaffold_80_9544102   "0/0"         "1|1"         "1/1"        
## HiC_scaffold_80_10770701  "0/0"         NA            "0/0"        
## HiC_scaffold_80_11590146  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_80_16953653  NA            "1/1"         "0/1"        
## HiC_scaffold_80_18938832  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_80_19015946  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_80_19404001  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_80_25346708  "0/0"         NA            "0/0"        
## HiC_scaffold_80_37479851  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_80_37507516  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_81_1187192   "0/0"         "1|1"         "0/0"        
## HiC_scaffold_81_2689826   "0/0"         "1|1"         "1|1"        
## HiC_scaffold_81_2690751   "0/0"         "0/0"         "0/1"        
## HiC_scaffold_81_6614123   "1/1"         "1/1"         NA           
## HiC_scaffold_81_7836855   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_81_10334868  "0/1"         NA            "1|1"        
## HiC_scaffold_81_10458752  NA            "1/1"         "1/1"        
## HiC_scaffold_81_17515538  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_81_40271282  "1/1"         "0/0"         "1|1"        
## HiC_scaffold_81_40271294  "0/0"         NA            "0/0"        
## HiC_scaffold_81_41096427  NA            "1|1"         "0|1"        
## HiC_scaffold_81_41096444  NA            "1|1"         "0|1"        
## HiC_scaffold_81_43820595  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_81_43820732  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_81_43854278  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_81_44804862  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_81_45063428  "0/0"         "0|1"         "0|1"        
## HiC_scaffold_81_45950590  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_81_46714752  NA            NA            "0/0"        
## HiC_scaffold_81_46714759  NA            NA            "0/0"        
## HiC_scaffold_81_47170397  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_81_47628201  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_81_48105216  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_81_48932070  "0/1"         "0/1"         "0/1"        
## HiC_scaffold_81_54050146  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_82_5672063   "1|1"         "1/1"         NA           
## HiC_scaffold_82_8796823   "0/0"         "0/1"         "0/1"        
## HiC_scaffold_82_13450959  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_82_26144442  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_82_26147011  "0/1"         "1|1"         "1|1"        
## HiC_scaffold_82_28907834  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_82_34413793  "1/1"         "0|0"         "0/1"        
## HiC_scaffold_82_34413800  "0/0"         "0|0"         "0/0"        
## HiC_scaffold_82_36173035  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_82_40539273  "1/1"         NA            "1/1"        
## HiC_scaffold_82_41470256  "1/1"         "0/1"         "1/1"        
## HiC_scaffold_83_23993605  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_83_35035961  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_83_43423618  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_83_46920654  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_83_46934197  "1|1"         NA            "0/1"        
## HiC_scaffold_84_356301    "1|1"         NA            "0|1"        
## HiC_scaffold_84_5761817   NA            "0/0"         "1/1"        
## HiC_scaffold_84_5769022   "0/1"         NA            "0/0"        
## HiC_scaffold_84_6288130   "0/0"         "1|1"         "0/0"        
## HiC_scaffold_84_6288141   "1|1"         "1|1"         "1|1"        
## HiC_scaffold_84_6288147   "0/0"         "0/0"         "1|1"        
## HiC_scaffold_84_7069238   NA            "0/0"         "0|1"        
## HiC_scaffold_84_9131309   "0/0"         "1/1"         "1/1"        
## HiC_scaffold_84_10148442  "0/0"         "0/0"         NA           
## HiC_scaffold_84_14659391  NA            NA            "1/1"        
## HiC_scaffold_84_16302752  "2|2"         NA            "2|2"        
## HiC_scaffold_84_18463244  "1/1"         "1/1"         NA           
## HiC_scaffold_84_22909575  "1|1"         "0|1"         NA           
## HiC_scaffold_84_29275266  "1/1"         NA            "0/0"        
## HiC_scaffold_84_31184610  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_84_33093169  "1|1"         NA            "0/0"        
## HiC_scaffold_84_37675180  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_84_39501814  "0|1"         "0/0"         "0/0"        
## HiC_scaffold_84_50169438  "0|1"         "1/1"         "0/0"        
## HiC_scaffold_84_50169445  "0|1"         "0/0"         "0/0"        
## HiC_scaffold_84_51231025  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_85_9792207   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_85_11784233  "0/0"         "1|1"         "0|1"        
## HiC_scaffold_85_11911022  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_85_11911142  "0/0"         NA            "0/0"        
## HiC_scaffold_85_11913828  NA            NA            "0/0"        
## HiC_scaffold_85_11913831  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_85_12353081  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_85_12414551  "0/0"         "0/0"         NA           
## HiC_scaffold_85_13043967  "0|1"         "0|1"         "0/0"        
## HiC_scaffold_85_13221888  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_85_27008863  "0/1"         NA            "0/1"        
## HiC_scaffold_85_28992264  "0|1"         "1|1"         "0/0"        
## HiC_scaffold_85_28992268  "0|1"         "1/1"         "0/1"        
## HiC_scaffold_85_64310850  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_85_65135112  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_85_65563529  "1/1"         "1/1"         "0/1"        
## HiC_scaffold_86_1949664   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_86_5340423   "1/1"         "0/0"         "1/1"        
## HiC_scaffold_86_5483991   "0/1"         "1|1"         "1|1"        
## HiC_scaffold_86_8928469   "1/1"         "1|1"         "1/1"        
## HiC_scaffold_86_23727924  "1|1"         NA            "1|1"        
## HiC_scaffold_86_24825818  "1|1"         "1|1"         "1/1"        
## HiC_scaffold_86_25333718  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_86_29668168  "0|0"         "0/0"         "0/0"        
## HiC_scaffold_86_30914243  "0/0"         NA            "1|1"        
## HiC_scaffold_86_32040320  "0|1"         "0/0"         "0/0"        
## HiC_scaffold_86_32040329  "0|1"         "0/0"         "0/0"        
## HiC_scaffold_86_32125061  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_86_32144758  "0/0"         "1/1"         "0|1"        
## HiC_scaffold_86_32153692  "1/1"         NA            "0/0"        
## HiC_scaffold_86_32534129  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_86_32605768  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_86_36355399  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_86_36357265  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_87_1253643   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_87_2137958   "0/0"         "1/1"         "1/1"        
## HiC_scaffold_87_3980100   "1/1"         "1/1"         "0/0"        
## HiC_scaffold_87_4395923   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_87_5489328   NA            "1|1"         "0|1"        
## HiC_scaffold_87_6300441   "1/1"         "0/0"         NA           
## HiC_scaffold_87_16306904  "0/1"         "0/0"         NA           
## HiC_scaffold_87_44780945  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_88_5584327   NA            "0|1"         "0|1"        
## HiC_scaffold_88_7104630   "0/1"         NA            NA           
## HiC_scaffold_88_7104631   "1/1"         NA            NA           
## HiC_scaffold_88_7104638   "1/1"         NA            NA           
## HiC_scaffold_88_7104639   "0/1"         NA            NA           
## HiC_scaffold_88_7104640   "1/1"         NA            NA           
## HiC_scaffold_88_7479340   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_88_8773607   "1|1"         "0/0"         "1|1"        
## HiC_scaffold_88_9883678   "1|1"         "0/1"         "1|1"        
## HiC_scaffold_88_10878718  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_88_19365116  "0|1"         "1|1"         NA           
## HiC_scaffold_88_20477349  "0/0"         "1/1"         "0|1"        
## HiC_scaffold_88_20557885  "0/1"         "0/0"         "0/1"        
## HiC_scaffold_89_675045    "0/1"         NA            "0/0"        
## HiC_scaffold_89_2815845   NA            "0/0"         NA           
## HiC_scaffold_89_2843940   "1/1"         "0/0"         "1/1"        
## HiC_scaffold_89_3018830   "0/1"         "1/1"         "1/1"        
## HiC_scaffold_89_13745506  "1/1"         NA            "0/0"        
## HiC_scaffold_89_30006907  "0/1"         "1/1"         "0/1"        
## HiC_scaffold_89_36509388  "1|1"         NA            "0/1"        
## HiC_scaffold_89_38703735  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_89_38764895  "1/1"         NA            "1/1"        
## HiC_scaffold_89_42052609  NA            "1/1"         NA           
## HiC_scaffold_89_42054991  "0/0"         "1/1"         NA           
## HiC_scaffold_89_44306958  "0/0"         "1|1"         "0/0"        
## HiC_scaffold_89_44338206  NA            "0/0"         "0/0"        
## HiC_scaffold_89_45298973  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_9_3529921    "1/1"         "1/1"         "0/0"        
## HiC_scaffold_9_5660454    "0/0"         "0/0"         "0/0"        
## HiC_scaffold_9_5660461    "1|1"         "1|1"         NA           
## HiC_scaffold_9_5854070    "1/1"         "1/1"         "1/1"        
## HiC_scaffold_9_6142415    "0|1"         "0/0"         "1|1"        
## HiC_scaffold_9_6142436    "0|1"         "0/0"         "0|1"        
## HiC_scaffold_9_6143781    "0/1"         "0/0"         NA           
## HiC_scaffold_9_6654825    "0/0"         "0/1"         "0/0"        
## HiC_scaffold_9_7094545    "1|1"         "1|1"         "1|1"        
## HiC_scaffold_9_7100208    "0|1"         "0/0"         "0/0"        
## HiC_scaffold_9_7109988    "0/1"         NA            "1/1"        
## HiC_scaffold_9_7111922    "0/0"         "1|1"         "0/0"        
## HiC_scaffold_9_8235781    "1/1"         "0/1"         "1/1"        
## HiC_scaffold_9_8279558    "1/1"         "1/1"         "1/1"        
## HiC_scaffold_9_15679481   "0/0"         "0/0"         "0|1"        
## HiC_scaffold_9_18082611   "0|1"         NA            "0/0"        
## HiC_scaffold_9_18090830   "0/1"         "0/0"         "0/1"        
## HiC_scaffold_9_30240531   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_90_10418696  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_90_11470224  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_90_13593319  "0/1"         NA            "1/1"        
## HiC_scaffold_90_16260161  NA            "0/0"         "0/0"        
## HiC_scaffold_90_22325499  "0/0"         NA            "1/1"        
## HiC_scaffold_90_23574204  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_90_23609908  "1|1"         "0/1"         "0/1"        
## HiC_scaffold_90_23623078  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_90_23626883  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_90_23812663  "1/1"         "0/0"         "1/1"        
## HiC_scaffold_90_25939283  "0/0"         "0/1"         NA           
## HiC_scaffold_90_25985714  "0/1"         NA            "0/1"        
## HiC_scaffold_90_30751272  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_90_31232025  "1|1"         "1|1"         "1|1"        
## HiC_scaffold_90_31245699  "0/0"         "0/0"         "0/1"        
## HiC_scaffold_90_31527975  "0/0"         "0/1"         "0/1"        
## HiC_scaffold_90_31546172  "0/1"         NA            "0/0"        
## HiC_scaffold_90_38511996  "1|1"         "1|1"         "0/0"        
## HiC_scaffold_90_38511999  "1|1"         "1|1"         "0|1"        
## HiC_scaffold_90_38517279  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_90_40624104  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_91_5644765   "0/1"         "1|1"         "0/0"        
## HiC_scaffold_91_5867214   "0|1"         "1|1"         NA           
## HiC_scaffold_91_5867226   "0|1"         "1|1"         "0/0"        
## HiC_scaffold_91_7704263   "0/0"         NA            "1|1"        
## HiC_scaffold_91_7871360   "1/1"         "0/0"         "0/1"        
## HiC_scaffold_91_8538014   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_91_13230485  "1|1"         "0|1"         "1|1"        
## HiC_scaffold_91_28696118  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_91_28696625  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_91_42177482  "0/0"         "1|1"         "0/1"        
## HiC_scaffold_91_46813640  "0/0"         "0|2"         "2|2"        
## HiC_scaffold_92_23783035  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_92_23783036  "0/0"         "0/1"         "0/0"        
## HiC_scaffold_92_24712793  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_92_28698258  "0|1"         "1|1"         "0/0"        
## HiC_scaffold_92_40691582  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_92_43967712  "0/0"         NA            "0/0"        
## HiC_scaffold_92_47147572  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_92_49042714  "1|1"         "1|1"         NA           
## HiC_scaffold_92_49042715  "1|1"         "1|1"         NA           
## HiC_scaffold_92_53634002  "0/1"         NA            "1/1"        
## HiC_scaffold_92_58211868  "1|1"         NA            "1|1"        
## HiC_scaffold_92_60114155  "1|1"         "0/0"         "1|1"        
## HiC_scaffold_92_63603483  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_92_64797225  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_92_68367476  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_93_1912167   "0/1"         "0/0"         "0/0"        
## HiC_scaffold_93_2485978   NA            NA            "0/1"        
## HiC_scaffold_93_3227638   "0/1"         "1/1"         "0/0"        
## HiC_scaffold_93_3227641   "0|1"         "0/0"         NA           
## HiC_scaffold_93_13971208  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_93_13987080  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_93_21125468  "0/0"         "1/1"         "0/0"        
## HiC_scaffold_93_21845293  "0/1"         "0/1"         "1/1"        
## HiC_scaffold_93_21845310  "0/0"         "0|1"         "0/0"        
## HiC_scaffold_93_21846342  "1|1"         "0|1"         "1/1"        
## HiC_scaffold_93_21846356  "1|1"         "0|1"         NA           
## HiC_scaffold_93_22589723  "1/1"         NA            "1/1"        
## HiC_scaffold_93_22619278  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_93_22631258  "1|1"         "0|1"         "1|1"        
## HiC_scaffold_93_22631266  "1|1"         "0|1"         "1|1"        
## HiC_scaffold_94_3110102   "0/1"         "1/1"         "0|1"        
## HiC_scaffold_94_3205919   "1/1"         "1/1"         "1/1"        
## HiC_scaffold_94_9023846   "0/0"         "0/1"         "0/1"        
## HiC_scaffold_94_11572820  "0/1"         "1/1"         "1/1"        
## HiC_scaffold_94_12368532  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_94_42179418  "1/1"         "1/1"         NA           
## HiC_scaffold_94_42179519  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_94_51646206  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_94_52781289  "0/1"         "1/1"         "0/0"        
## HiC_scaffold_94_53790035  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_94_53792738  "0/1"         "0/0"         "1/1"        
## HiC_scaffold_94_56768905  "0/0"         "0/0"         "1|1"        
## HiC_scaffold_946_81276    "1/1"         "1/1"         "0/1"        
## HiC_scaffold_95_3189690   "1/1"         "0/0"         "1/1"        
## HiC_scaffold_95_4397298   "0/1"         "1|1"         "0/1"        
## HiC_scaffold_95_9469157   "1|1"         "0/0"         "0/0"        
## HiC_scaffold_95_10641411  "1/1"         "0/1"         "0/0"        
## HiC_scaffold_95_10949821  "0/0"         "0/0"         "0/0"        
## HiC_scaffold_95_12993394  "0/0"         "0|1"         "0|1"        
## HiC_scaffold_95_15515793  "0/0"         "0/0"         "0|1"        
## HiC_scaffold_95_15608785  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_95_15609137  "1/1"         "0/0"         "0/0"        
## HiC_scaffold_95_16295316  "1/1"         NA            "0/1"        
## HiC_scaffold_95_22656165  "0/0"         "0|1"         "0|1"        
## HiC_scaffold_95_25885727  "1/1"         "0/1"         "1|1"        
## HiC_scaffold_96_10460019  "0/0"         "1/1"         "1/1"        
## HiC_scaffold_96_27155785  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_96_37939434  "0/1"         NA            "0/0"        
## HiC_scaffold_96_51115048  "0/1"         NA            "0/0"        
## HiC_scaffold_96_51116511  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_96_51915040  "1|1"         NA            "0/1"        
## HiC_scaffold_96_52681287  "0/1"         "0/0"         "0/0"        
## HiC_scaffold_96_53276519  NA            "0/1"         "0/0"        
## HiC_scaffold_97_1736926   "1|1"         "0/0"         "1|1"        
## HiC_scaffold_97_1736994   "1|1"         "0|1"         "1|1"        
## HiC_scaffold_97_3863543   NA            "0/0"         "1/1"        
## HiC_scaffold_97_4200445   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_97_4799162   "0/1"         "0/1"         "0/0"        
## HiC_scaffold_97_5027892   "0/0"         "1/1"         "0/0"        
## HiC_scaffold_97_8007933   "1/1"         "0/1"         "1/1"        
## HiC_scaffold_97_17997210  "0/0"         "0|1"         "1|1"        
## HiC_scaffold_97_18604647  "1/1"         "1/1"         "1/1"        
## HiC_scaffold_97_20239636  "0/1"         NA            "0/0"        
## HiC_scaffold_98_15154096  "0|1"         "0/0"         "1|1"        
## HiC_scaffold_98_22342667  "0/0"         "0/0"         "1/1"        
## HiC_scaffold_98_22634293  NA            NA            "1|1"        
## HiC_scaffold_98_22634294  NA            NA            "1|1"        
## HiC_scaffold_98_22721138  "1/1"         "1|1"         NA           
## HiC_scaffold_98_22869378  "1/1"         "1/1"         "0/0"        
## HiC_scaffold_98_24108405  "0/0"         "0|0"         "0/0"        
## HiC_scaffold_98_27359592  "0|1"         "1|1"         "1/1"        
## HiC_scaffold_98_28549834  "0/1"         NA            "1/1"        
## HiC_scaffold_98_28867520  "1|1"         NA            "0/0"        
## HiC_scaffold_98_28867524  "1|1"         NA            "0/0"        
## HiC_scaffold_98_29431717  "0/1"         "1|1"         "0|1"        
## HiC_scaffold_98_29675109  "0/1"         "1/1"         "0/1"        
## HiC_scaffold_99_1163244   NA            NA            NA           
## HiC_scaffold_99_1451611   "0/1"         "1/1"         "0/0"        
## HiC_scaffold_99_2021961   "0/0"         "0/0"         "0/0"        
## HiC_scaffold_99_5134392   "0/1"         "1/1"         NA           
## HiC_scaffold_99_5239109   "1/1"         NA            "0/0"        
## HiC_scaffold_99_6917738   "1|1"         "0/0"         "1|1"        
## HiC_scaffold_99_11221970  "1|1"         "0/0"         "0/0"        
## HiC_scaffold_99_25982503  "1/1"         "0/1"         "1/1"        
##                           Tank_9_Crab_4
## HiC_scaffold_1_2523394    "0/0"        
## HiC_scaffold_1_2542157    "0/1"        
## HiC_scaffold_1_2647806    "1/1"        
## HiC_scaffold_1_2970226    "0/0"        
## HiC_scaffold_1_3329447    "0/0"        
## HiC_scaffold_1_3795100    "1|1"        
## HiC_scaffold_10_2221345   "0/0"        
## HiC_scaffold_10_2299490   "0/0"        
## HiC_scaffold_10_2565301   NA           
## HiC_scaffold_10_3864355   NA           
## HiC_scaffold_10_4319900   "0/0"        
## HiC_scaffold_10_4319907   "0/0"        
## HiC_scaffold_10_5404579   "0/0"        
## HiC_scaffold_10_5843373   "0/0"        
## HiC_scaffold_100_854947   "0/0"        
## HiC_scaffold_100_1070817  NA           
## HiC_scaffold_100_2002094  "1/2"        
## HiC_scaffold_100_2002097  "1/1"        
## HiC_scaffold_100_2010331  "0/0"        
## HiC_scaffold_100_5186498  "1/1"        
## HiC_scaffold_100_5828477  "0/0"        
## HiC_scaffold_100_6470419  "0/0"        
## HiC_scaffold_100_6739225  "1/1"        
## HiC_scaffold_100_6739258  "1|1"        
## HiC_scaffold_100_6739264  "1|1"        
## HiC_scaffold_100_6907177  "0/0"        
## HiC_scaffold_100_8384481  "1|1"        
## HiC_scaffold_100_8384495  "1|1"        
## HiC_scaffold_100_9451470  "2/2"        
## HiC_scaffold_100_10464574 NA           
## HiC_scaffold_100_11934792 "0/0"        
## HiC_scaffold_100_11980177 "1/1"        
## HiC_scaffold_100_18465760 "0/0"        
## HiC_scaffold_100_18465762 "0/0"        
## HiC_scaffold_100_18466205 "0/0"        
## HiC_scaffold_100_31738115 "1/1"        
## HiC_scaffold_100_44227362 NA           
## HiC_scaffold_101_12808961 "0/0"        
## HiC_scaffold_101_13897149 "0/1"        
## HiC_scaffold_101_18337279 "1/1"        
## HiC_scaffold_101_20800167 "1/1"        
## HiC_scaffold_102_2260041  "0/0"        
## HiC_scaffold_102_8734519  "0/0"        
## HiC_scaffold_102_10233999 "1|1"        
## HiC_scaffold_102_11446042 "1/1"        
## HiC_scaffold_102_15918694 "0/1"        
## HiC_scaffold_102_15935667 "0/0"        
## HiC_scaffold_102_17442643 "0/1"        
## HiC_scaffold_102_17608969 "0/1"        
## HiC_scaffold_102_20180185 "0/0"        
## HiC_scaffold_102_24788723 "0/0"        
## HiC_scaffold_102_25423729 "1|1"        
## HiC_scaffold_102_39755142 "0/1"        
## HiC_scaffold_102_52046978 "1/1"        
## HiC_scaffold_1027_34152   "1/1"        
## HiC_scaffold_103_601715   "0/0"        
## HiC_scaffold_103_2891384  "0/1"        
## HiC_scaffold_103_8191270  "0/1"        
## HiC_scaffold_103_9521272  "1/1"        
## HiC_scaffold_103_14768909 "1|1"        
## HiC_scaffold_103_19312119 "1|1"        
## HiC_scaffold_103_21284866 "0/1"        
## HiC_scaffold_103_31428453 NA           
## HiC_scaffold_103_42567396 "0/0"        
## HiC_scaffold_103_45921571 "0/0"        
## HiC_scaffold_103_45921573 "0/0"        
## HiC_scaffold_103_49592022 "1|1"        
## HiC_scaffold_103_49620132 "1|1"        
## HiC_scaffold_103_50440915 "1|1"        
## HiC_scaffold_103_51944137 "1/1"        
## HiC_scaffold_103_54308582 NA           
## HiC_scaffold_103_54424067 "1|1"        
## HiC_scaffold_103_56932900 "1/1"        
## HiC_scaffold_103_57470264 NA           
## HiC_scaffold_104_7771140  "1/1"        
## HiC_scaffold_104_9103028  "0/0"        
## HiC_scaffold_104_10633168 "1/1"        
## HiC_scaffold_104_18917031 "0/0"        
## HiC_scaffold_104_20851902 "0/0"        
## HiC_scaffold_104_24451803 "0/0"        
## HiC_scaffold_104_28597688 "0/0"        
## HiC_scaffold_104_40927999 "1/1"        
## HiC_scaffold_104_46490074 NA           
## HiC_scaffold_104_49759053 "1/1"        
## HiC_scaffold_104_57267896 "0/1"        
## HiC_scaffold_104_62570010 NA           
## HiC_scaffold_11_32804173  "1/1"        
## HiC_scaffold_11_34516508  "1/1"        
## HiC_scaffold_11_35332996  "1/1"        
## HiC_scaffold_11_35904027  "1/1"        
## HiC_scaffold_11_41539793  NA           
## HiC_scaffold_11_41604080  NA           
## HiC_scaffold_11_42855323  NA           
## HiC_scaffold_11_45339409  "0/0"        
## HiC_scaffold_11_45339410  "0|1"        
## HiC_scaffold_11_47544035  "0/0"        
## HiC_scaffold_12_7515164   "0/0"        
## HiC_scaffold_12_12640100  "0/0"        
## HiC_scaffold_12_12826705  "0/0"        
## HiC_scaffold_12_14899285  "0/0"        
## HiC_scaffold_12_17465672  "0/0"        
## HiC_scaffold_12_22770710  NA           
## HiC_scaffold_12_32318964  "0/0"        
## HiC_scaffold_12_35136373  NA           
## HiC_scaffold_12_40687860  "0/0"        
## HiC_scaffold_13_2938168   NA           
## HiC_scaffold_13_20350974  "1/1"        
## HiC_scaffold_13_27759554  NA           
## HiC_scaffold_13_28146828  "0|1"        
## HiC_scaffold_13_28146830  "0|1"        
## HiC_scaffold_13_28925343  "1/1"        
## HiC_scaffold_13_31913129  "0/1"        
## HiC_scaffold_13_32078924  "1|1"        
## HiC_scaffold_13_33864805  "1/1"        
## HiC_scaffold_13_34892542  NA           
## HiC_scaffold_13_34893103  "1/1"        
## HiC_scaffold_13_35762551  "0/0"        
## HiC_scaffold_13_35881745  "1/1"        
## HiC_scaffold_13_35881749  "0/0"        
## HiC_scaffold_14_3843214   "0|1"        
## HiC_scaffold_14_25884262  "0/0"        
## HiC_scaffold_14_27050415  NA           
## HiC_scaffold_14_27118495  "1/1"        
## HiC_scaffold_14_27277222  "1/1"        
## HiC_scaffold_14_29215814  "1|1"        
## HiC_scaffold_15_2460398   "1|1"        
## HiC_scaffold_15_2462980   "1/1"        
## HiC_scaffold_15_2467289   "1/1"        
## HiC_scaffold_15_5669141   "0/1"        
## HiC_scaffold_15_13700694  "0/0"        
## HiC_scaffold_15_17825275  "0/0"        
## HiC_scaffold_15_19938475  "1/1"        
## HiC_scaffold_15_23865956  "1|1"        
## HiC_scaffold_15_28837774  "0|1"        
## HiC_scaffold_15_28837810  "0/1"        
## HiC_scaffold_15_28837823  "0/0"        
## HiC_scaffold_15_28837835  "0|1"        
## HiC_scaffold_15_28837841  "0/0"        
## HiC_scaffold_15_28837854  "1/1"        
## HiC_scaffold_15_34827832  "0/1"        
## HiC_scaffold_15_34893807  NA           
## HiC_scaffold_15_35327348  "0/0"        
## HiC_scaffold_15_42161112  "0/0"        
## HiC_scaffold_15_42164926  "0/0"        
## HiC_scaffold_15_42164946  NA           
## HiC_scaffold_15_46289572  "1/1"        
## HiC_scaffold_15_50591576  "1|1"        
## HiC_scaffold_15_50759128  "1/1"        
## HiC_scaffold_15_51188336  NA           
## HiC_scaffold_15_54726640  "0/0"        
## HiC_scaffold_15_54788235  NA           
## HiC_scaffold_15_56162375  "1|1"        
## HiC_scaffold_15_61091106  "0/0"        
## HiC_scaffold_15_61464359  "1/1"        
## HiC_scaffold_15_61510386  "1/1"        
## HiC_scaffold_15_62309788  "0/0"        
## HiC_scaffold_15_62309793  "0/0"        
## HiC_scaffold_15_62771254  "0/0"        
## HiC_scaffold_15_63493927  "1/1"        
## HiC_scaffold_15_64997502  "0/0"        
## HiC_scaffold_15_65007865  "1/1"        
## HiC_scaffold_15_65007879  "0/0"        
## HiC_scaffold_15_66038529  NA           
## HiC_scaffold_15_69811281  "1/1"        
## HiC_scaffold_16_14205925  "0/0"        
## HiC_scaffold_16_30404047  "0/1"        
## HiC_scaffold_16_57413288  "1|1"        
## HiC_scaffold_16_63687578  "0/0"        
## HiC_scaffold_16_74138787  "0/0"        
## HiC_scaffold_16_74140106  "0/0"        
## HiC_scaffold_16_76276015  "0/0"        
## HiC_scaffold_17_11390873  "0/1"        
## HiC_scaffold_17_12551128  "1/1"        
## HiC_scaffold_17_16615612  "1/1"        
## HiC_scaffold_17_18838093  "0/0"        
## HiC_scaffold_17_22801072  "0/1"        
## HiC_scaffold_17_23788599  "0/0"        
## HiC_scaffold_17_29383895  NA           
## HiC_scaffold_17_29618771  "1/1"        
## HiC_scaffold_17_29976139  "0/1"        
## HiC_scaffold_17_31107213  "1/1"        
## HiC_scaffold_17_32493792  "0/1"        
## HiC_scaffold_17_33732050  NA           
## HiC_scaffold_17_33801314  "1|1"        
## HiC_scaffold_17_34081889  "1/1"        
## HiC_scaffold_18_227565    "0/1"        
## HiC_scaffold_18_1213486   "1/1"        
## HiC_scaffold_18_1701312   "0/0"        
## HiC_scaffold_18_3506437   NA           
## HiC_scaffold_18_6304978   "1/1"        
## HiC_scaffold_18_6351493   "1/1"        
## HiC_scaffold_18_6358009   NA           
## HiC_scaffold_18_10770701  NA           
## HiC_scaffold_18_13342858  "1/1"        
## HiC_scaffold_18_20045832  "2|2"        
## HiC_scaffold_18_22682683  NA           
## HiC_scaffold_18_26337790  "0/0"        
## HiC_scaffold_18_48929148  NA           
## HiC_scaffold_18_51490626  "0/0"        
## HiC_scaffold_18_53723137  NA           
## HiC_scaffold_18_54496637  NA           
## HiC_scaffold_18_55294388  "1/1"        
## HiC_scaffold_19_279726    "0/0"        
## HiC_scaffold_19_6426572   "1/1"        
## HiC_scaffold_19_6575887   NA           
## HiC_scaffold_19_7755254   "0/0"        
## HiC_scaffold_19_9301421   "0|1"        
## HiC_scaffold_19_9357388   "1|1"        
## HiC_scaffold_19_9778841   "1/1"        
## HiC_scaffold_19_10928976  "0/0"        
## HiC_scaffold_19_10928980  "0/0"        
## HiC_scaffold_19_10928982  "1|1"        
## HiC_scaffold_19_11106347  "0/0"        
## HiC_scaffold_19_11590139  "1/1"        
## HiC_scaffold_19_11665300  "1/1"        
## HiC_scaffold_19_14793640  NA           
## HiC_scaffold_19_22112743  "0/0"        
## HiC_scaffold_19_25473671  "0/0"        
## HiC_scaffold_19_25473692  "0/0"        
## HiC_scaffold_19_28110829  "1|1"        
## HiC_scaffold_19_28465002  NA           
## HiC_scaffold_19_28465167  "0/0"        
## HiC_scaffold_19_30106869  "1|1"        
## HiC_scaffold_19_52538858  NA           
## HiC_scaffold_19_52596196  "0/0"        
## HiC_scaffold_19_53482993  "1/1"        
## HiC_scaffold_19_54312637  "0/1"        
## HiC_scaffold_19_59345841  "1|1"        
## HiC_scaffold_2_3296144    "1|1"        
## HiC_scaffold_2_3418589    "0/0"        
## HiC_scaffold_2_3864060    "1/1"        
## HiC_scaffold_2_4104755    NA           
## HiC_scaffold_2_4104758    NA           
## HiC_scaffold_2_8316721    "0/0"        
## HiC_scaffold_2_9098999    NA           
## HiC_scaffold_2_10457537   "0/0"        
## HiC_scaffold_2_19048125   "1/1"        
## HiC_scaffold_2_21748201   "1/1"        
## HiC_scaffold_2_33187764   "0/0"        
## HiC_scaffold_2_33187770   "0/0"        
## HiC_scaffold_2_33187959   "1/1"        
## HiC_scaffold_2_41603929   "0/1"        
## HiC_scaffold_2_52233191   "0/1"        
## HiC_scaffold_2_52400748   "1/1"        
## HiC_scaffold_2_52403793   "1|1"        
## HiC_scaffold_2_52799130   "1/1"        
## HiC_scaffold_20_10332897  "0/0"        
## HiC_scaffold_20_17198418  "0/0"        
## HiC_scaffold_20_17915398  "0/0"        
## HiC_scaffold_20_18872955  "0/0"        
## HiC_scaffold_20_19055301  "0/0"        
## HiC_scaffold_20_19150094  "0/0"        
## HiC_scaffold_20_20651022  "1|1"        
## HiC_scaffold_20_22651296  "0/0"        
## HiC_scaffold_21_2009156   "1|1"        
## HiC_scaffold_21_2435648   "1/1"        
## HiC_scaffold_21_7164210   "0/0"        
## HiC_scaffold_21_9786512   "0/0"        
## HiC_scaffold_21_12424922  "1|1"        
## HiC_scaffold_21_17966833  "1/1"        
## HiC_scaffold_21_19025429  "0/0"        
## HiC_scaffold_21_20058318  "1/1"        
## HiC_scaffold_21_20562855  "1|1"        
## HiC_scaffold_21_20661860  "0/0"        
## HiC_scaffold_21_20895395  "0/0"        
## HiC_scaffold_21_21158811  "1|1"        
## HiC_scaffold_21_22250857  "0/1"        
## HiC_scaffold_21_22250866  "0/1"        
## HiC_scaffold_21_22257737  "0/1"        
## HiC_scaffold_21_22644667  "1|1"        
## HiC_scaffold_21_22644673  "1|1"        
## HiC_scaffold_21_22666888  "0/1"        
## HiC_scaffold_21_23905416  "0/0"        
## HiC_scaffold_21_23981651  "0/0"        
## HiC_scaffold_21_24287068  "0/0"        
## HiC_scaffold_21_30798434  NA           
## HiC_scaffold_21_35006232  "1/1"        
## HiC_scaffold_21_35779294  "0/0"        
## HiC_scaffold_22_124910    NA           
## HiC_scaffold_22_751023    "1/1"        
## HiC_scaffold_22_1042644   "1|1"        
## HiC_scaffold_22_1044708   "1/1"        
## HiC_scaffold_22_2174911   "1/1"        
## HiC_scaffold_22_3431122   "1|1"        
## HiC_scaffold_22_3446787   "1|1"        
## HiC_scaffold_22_3451756   "1|1"        
## HiC_scaffold_22_3720435   "1/1"        
## HiC_scaffold_22_4065466   "0/0"        
## HiC_scaffold_22_4739889   "2|2"        
## HiC_scaffold_22_4918263   "1|1"        
## HiC_scaffold_22_5750008   NA           
## HiC_scaffold_22_5769942   "0/0"        
## HiC_scaffold_22_28264522  NA           
## HiC_scaffold_22_28265115  "0/0"        
## HiC_scaffold_22_29205851  "1/1"        
## HiC_scaffold_22_29822340  "1/1"        
## HiC_scaffold_22_30797357  "0/0"        
## HiC_scaffold_22_32042610  NA           
## HiC_scaffold_23_11215327  "1/1"        
## HiC_scaffold_23_27081333  NA           
## HiC_scaffold_23_28672255  "0/0"        
## HiC_scaffold_23_29218828  "1/1"        
## HiC_scaffold_23_32528768  NA           
## HiC_scaffold_23_32669383  "0/0"        
## HiC_scaffold_23_33199663  "0/0"        
## HiC_scaffold_23_33245843  "1/1"        
## HiC_scaffold_23_40824545  "0/0"        
## HiC_scaffold_23_41504669  "0/0"        
## HiC_scaffold_24_16622654  "0/0"        
## HiC_scaffold_24_16622681  "0/0"        
## HiC_scaffold_24_19851560  "0/0"        
## HiC_scaffold_24_20590563  NA           
## HiC_scaffold_24_27745754  "0/1"        
## HiC_scaffold_24_28763699  NA           
## HiC_scaffold_24_28763703  NA           
## HiC_scaffold_25_4135969   NA           
## HiC_scaffold_25_4201677   "1/1"        
## HiC_scaffold_25_5872831   "0/0"        
## HiC_scaffold_25_6879627   "0/0"        
## HiC_scaffold_25_8172813   "0/0"        
## HiC_scaffold_25_9969507   NA           
## HiC_scaffold_25_10691336  "0/0"        
## HiC_scaffold_25_21286462  "0/0"        
## HiC_scaffold_26_4086662   "0/0"        
## HiC_scaffold_26_7539671   "0/1"        
## HiC_scaffold_26_8348511   "1/1"        
## HiC_scaffold_26_9043748   "1|1"        
## HiC_scaffold_26_9045655   "0|1"        
## HiC_scaffold_26_11253181  "0/1"        
## HiC_scaffold_26_17828344  "1/1"        
## HiC_scaffold_26_17932520  "1/1"        
## HiC_scaffold_26_17941459  "0/0"        
## HiC_scaffold_26_17960877  "1/1"        
## HiC_scaffold_26_18284041  NA           
## HiC_scaffold_26_18288701  "1|1"        
## HiC_scaffold_26_18294422  "0/0"        
## HiC_scaffold_26_21307365  "1/1"        
## HiC_scaffold_26_22159924  "1/1"        
## HiC_scaffold_26_22161535  NA           
## HiC_scaffold_26_24794176  "0/0"        
## HiC_scaffold_26_28538113  "1|1"        
## HiC_scaffold_26_29031357  NA           
## HiC_scaffold_26_29163462  "0/0"        
## HiC_scaffold_26_42631018  "0/0"        
## HiC_scaffold_26_42634814  "1/1"        
## HiC_scaffold_26_43483190  "1/1"        
## HiC_scaffold_26_49955889  "0/0"        
## HiC_scaffold_26_58342510  NA           
## HiC_scaffold_27_1496120   "0/0"        
## HiC_scaffold_27_1947057   "0/0"        
## HiC_scaffold_27_2359058   "1/1"        
## HiC_scaffold_27_2699645   NA           
## HiC_scaffold_27_4425475   NA           
## HiC_scaffold_27_7539469   NA           
## HiC_scaffold_27_7777122   "0/0"        
## HiC_scaffold_27_16657070  "0/0"        
## HiC_scaffold_27_24539255  NA           
## HiC_scaffold_27_34642359  "1|1"        
## HiC_scaffold_27_34647277  "0/0"        
## HiC_scaffold_27_35380535  NA           
## HiC_scaffold_27_35383230  "0/0"        
## HiC_scaffold_28_21261390  "0|1"        
## HiC_scaffold_28_24490442  "0/0"        
## HiC_scaffold_28_25601927  "0/1"        
## HiC_scaffold_28_31793968  "0/0"        
## HiC_scaffold_28_32126687  NA           
## HiC_scaffold_28_34779518  "1/1"        
## HiC_scaffold_28_36042491  NA           
## HiC_scaffold_28_36692361  "0/0"        
## HiC_scaffold_28_38672993  "0|1"        
## HiC_scaffold_28_39640526  "0/0"        
## HiC_scaffold_28_40169242  "0/0"        
## HiC_scaffold_28_41059640  "1|1"        
## HiC_scaffold_28_42514830  "0/0"        
## HiC_scaffold_28_42601570  "0/0"        
## HiC_scaffold_28_42601585  "0/0"        
## HiC_scaffold_28_43018803  "1/1"        
## HiC_scaffold_28_43036165  "1/1"        
## HiC_scaffold_29_344317    NA           
## HiC_scaffold_29_3811176   "1|1"        
## HiC_scaffold_29_6073993   "0/0"        
## HiC_scaffold_29_6415222   NA           
## HiC_scaffold_29_8224424   "0/0"        
## HiC_scaffold_29_11153624  "0/0"        
## HiC_scaffold_29_11153712  "0/0"        
## HiC_scaffold_29_11167966  NA           
## HiC_scaffold_29_11491468  "0/0"        
## HiC_scaffold_29_12103558  "1/1"        
## HiC_scaffold_29_14279322  "1/1"        
## HiC_scaffold_29_14913907  "0/0"        
## HiC_scaffold_29_16378276  "1/1"        
## HiC_scaffold_29_20635937  "1/1"        
## HiC_scaffold_29_20636787  "0/0"        
## HiC_scaffold_29_22560215  "1/1"        
## HiC_scaffold_29_22561144  NA           
## HiC_scaffold_29_24017849  "1/1"        
## HiC_scaffold_29_31603590  "1/1"        
## HiC_scaffold_3_21670751   "0/0"        
## HiC_scaffold_3_24747014   "0/0"        
## HiC_scaffold_3_27861792   "1/1"        
## HiC_scaffold_3_28057869   "0/0"        
## HiC_scaffold_3_28441436   "0/0"        
## HiC_scaffold_3_28694380   "1|1"        
## HiC_scaffold_3_31361023   "0/0"        
## HiC_scaffold_3_31960572   "1|1"        
## HiC_scaffold_3_32157169   "1/1"        
## HiC_scaffold_3_32159152   NA           
## HiC_scaffold_3_34124237   "1/1"        
## HiC_scaffold_30_14199802  NA           
## HiC_scaffold_30_16052331  "1/1"        
## HiC_scaffold_30_19914075  "1/1"        
## HiC_scaffold_30_20688783  "0/0"        
## HiC_scaffold_30_21446076  "0/0"        
## HiC_scaffold_30_21598563  "0/0"        
## HiC_scaffold_30_22155728  "0/0"        
## HiC_scaffold_31_687411    "0/0"        
## HiC_scaffold_31_3224722   "0|1"        
## HiC_scaffold_31_3574854   NA           
## HiC_scaffold_31_5899551   "0/0"        
## HiC_scaffold_31_5911491   "1|1"        
## HiC_scaffold_31_6297680   NA           
## HiC_scaffold_31_12394016  NA           
## HiC_scaffold_31_12394040  "0/0"        
## HiC_scaffold_31_18612650  NA           
## HiC_scaffold_32_4446859   "1/1"        
## HiC_scaffold_32_5274796   "0/1"        
## HiC_scaffold_32_5275108   "0/1"        
## HiC_scaffold_32_5282358   "0/1"        
## HiC_scaffold_32_5450203   "1|1"        
## HiC_scaffold_32_44200178  "0/0"        
## HiC_scaffold_33_638523    "0/0"        
## HiC_scaffold_33_44489563  "1/1"        
## HiC_scaffold_33_44489988  "0/0"        
## HiC_scaffold_33_47080180  "0/0"        
## HiC_scaffold_33_47495907  "0/0"        
## HiC_scaffold_33_51865876  NA           
## HiC_scaffold_34_1096982   "1/1"        
## HiC_scaffold_34_6091943   "0/0"        
## HiC_scaffold_34_6100160   "1|1"        
## HiC_scaffold_34_24368584  "1/1"        
## HiC_scaffold_35_3233120   "1/1"        
## HiC_scaffold_35_3253574   "0/1"        
## HiC_scaffold_35_5512296   "1/1"        
## HiC_scaffold_35_15114788  NA           
## HiC_scaffold_35_21214090  "1/1"        
## HiC_scaffold_35_21462564  "0/0"        
## HiC_scaffold_35_22746783  NA           
## HiC_scaffold_35_22747085  "0/0"        
## HiC_scaffold_35_23059580  "0/1"        
## HiC_scaffold_35_23158882  "0/0"        
## HiC_scaffold_35_23261143  NA           
## HiC_scaffold_35_24403602  "0/0"        
## HiC_scaffold_35_24403620  "1/1"        
## HiC_scaffold_35_24993986  NA           
## HiC_scaffold_35_24993998  NA           
## HiC_scaffold_36_1538038   "0/1"        
## HiC_scaffold_36_2464728   "0/1"        
## HiC_scaffold_36_5489050   NA           
## HiC_scaffold_36_9673981   "0/0"        
## HiC_scaffold_36_9674127   "1/1"        
## HiC_scaffold_36_9674756   "1/1"        
## HiC_scaffold_36_9676329   "1/1"        
## HiC_scaffold_36_12304516  "1/1"        
## HiC_scaffold_36_12515555  "1|1"        
## HiC_scaffold_36_13092647  "0/0"        
## HiC_scaffold_36_13766994  "1/1"        
## HiC_scaffold_36_14567741  "1/1"        
## HiC_scaffold_36_15530578  "1|1"        
## HiC_scaffold_37_679894    NA           
## HiC_scaffold_37_916693    NA           
## HiC_scaffold_37_928146    "0/0"        
## HiC_scaffold_37_1256768   "0/0"        
## HiC_scaffold_37_1270034   NA           
## HiC_scaffold_37_1770997   "0/0"        
## HiC_scaffold_37_1798298   "0/0"        
## HiC_scaffold_37_2010342   "1|1"        
## HiC_scaffold_37_2141526   "0/0"        
## HiC_scaffold_37_3952190   "1|1"        
## HiC_scaffold_37_3952215   "0|1"        
## HiC_scaffold_37_9915037   "0/0"        
## HiC_scaffold_38_5383430   "1/1"        
## HiC_scaffold_38_5668363   "0/0"        
## HiC_scaffold_38_5879849   "1/1"        
## HiC_scaffold_38_5880155   "0/0"        
## HiC_scaffold_38_10612790  "1/1"        
## HiC_scaffold_38_11940240  "1/1"        
## HiC_scaffold_38_12878826  "0/0"        
## HiC_scaffold_38_12959698  "1|1"        
## HiC_scaffold_38_13087368  "1/1"        
## HiC_scaffold_38_13480648  NA           
## HiC_scaffold_38_13965243  "1/1"        
## HiC_scaffold_38_14089955  "0/0"        
## HiC_scaffold_38_14408072  NA           
## HiC_scaffold_38_14931216  "1/1"        
## HiC_scaffold_38_14978356  "0/0"        
## HiC_scaffold_38_14978367  "0/0"        
## HiC_scaffold_38_15292863  "1/1"        
## HiC_scaffold_38_15306135  "1|1"        
## HiC_scaffold_38_16077506  NA           
## HiC_scaffold_38_16138965  "1/1"        
## HiC_scaffold_38_16226040  "1/1"        
## HiC_scaffold_39_1393769   NA           
## HiC_scaffold_39_2014970   "0/1"        
## HiC_scaffold_39_2014982   "0|1"        
## HiC_scaffold_39_2014985   "0|1"        
## HiC_scaffold_39_2426443   NA           
## HiC_scaffold_39_2485330   "1/1"        
## HiC_scaffold_39_3350506   "0/0"        
## HiC_scaffold_39_5897388   "0/0"        
## HiC_scaffold_39_17631133  "0/0"        
## HiC_scaffold_4_12107187   "1/1"        
## HiC_scaffold_4_18241670   "1|1"        
## HiC_scaffold_4_18241723   "1/1"        
## HiC_scaffold_4_22418566   "1|1"        
## HiC_scaffold_4_27899990   "1|1"        
## HiC_scaffold_4_35575118   "0/0"        
## HiC_scaffold_4_38000967   "1/1"        
## HiC_scaffold_4_50654021   "1|1"        
## HiC_scaffold_40_2243415   "0/1"        
## HiC_scaffold_40_3000572   "0/0"        
## HiC_scaffold_40_3014177   "1|1"        
## HiC_scaffold_40_3027900   "1/1"        
## HiC_scaffold_40_3143834   "1/1"        
## HiC_scaffold_40_3843942   NA           
## HiC_scaffold_40_3847620   "0/0"        
## HiC_scaffold_40_3891007   NA           
## HiC_scaffold_40_3920667   "2/2"        
## HiC_scaffold_40_4177963   "0/0"        
## HiC_scaffold_40_4819107   "0/0"        
## HiC_scaffold_40_4819834   NA           
## HiC_scaffold_40_5788271   NA           
## HiC_scaffold_40_5965269   "1|1"        
## HiC_scaffold_40_6204154   "0/0"        
## HiC_scaffold_40_8387917   "0|1"        
## HiC_scaffold_41_3235384   "0/0"        
## HiC_scaffold_41_3583000   NA           
## HiC_scaffold_41_5334504   NA           
## HiC_scaffold_41_5387631   "0/0"        
## HiC_scaffold_41_6423426   "0/0"        
## HiC_scaffold_41_14359947  "0/0"        
## HiC_scaffold_41_24007593  "0/0"        
## HiC_scaffold_41_26225447  "1/1"        
## HiC_scaffold_41_28626484  "0/0"        
## HiC_scaffold_41_28660620  "1|1"        
## HiC_scaffold_41_31007688  NA           
## HiC_scaffold_42_1131084   "1/1"        
## HiC_scaffold_42_1818523   "0/0"        
## HiC_scaffold_42_2165002   "0/0"        
## HiC_scaffold_42_2711332   "0/0"        
## HiC_scaffold_42_6142699   NA           
## HiC_scaffold_42_6744976   "0/0"        
## HiC_scaffold_42_8066919   "0/0"        
## HiC_scaffold_42_8068292   "1/1"        
## HiC_scaffold_42_12487888  "0|1"        
## HiC_scaffold_42_41366687  "1/1"        
## HiC_scaffold_42_47313337  NA           
## HiC_scaffold_42_47313338  NA           
## HiC_scaffold_42_50784971  NA           
## HiC_scaffold_42_50784977  NA           
## HiC_scaffold_42_50784981  NA           
## HiC_scaffold_42_51916989  "1/1"        
## HiC_scaffold_43_3842003   NA           
## HiC_scaffold_43_14140861  "1|1"        
## HiC_scaffold_43_15053605  "1|1"        
## HiC_scaffold_43_17289945  "0/0"        
## HiC_scaffold_43_29967704  "0/0"        
## HiC_scaffold_43_35745831  "1|1"        
## HiC_scaffold_43_37627949  "0|1"        
## HiC_scaffold_43_37628126  "1/1"        
## HiC_scaffold_43_44017118  "1/1"        
## HiC_scaffold_43_55124138  NA           
## HiC_scaffold_43_60107326  NA           
## HiC_scaffold_43_61359386  NA           
## HiC_scaffold_43_61702593  "0/0"        
## HiC_scaffold_43_61702606  "0/0"        
## HiC_scaffold_43_61702721  "0/0"        
## HiC_scaffold_43_61702738  "0/0"        
## HiC_scaffold_43_62511703  "0/0"        
## HiC_scaffold_43_64069457  "0/0"        
## HiC_scaffold_43_64577269  NA           
## HiC_scaffold_44_1920144   "0/0"        
## HiC_scaffold_44_2148035   "0/0"        
## HiC_scaffold_44_2568167   "1/1"        
## HiC_scaffold_45_4180070   "0/0"        
## HiC_scaffold_45_4797754   "2/2"        
## HiC_scaffold_45_5911123   "0/0"        
## HiC_scaffold_45_6958990   NA           
## HiC_scaffold_45_8516216   "1|1"        
## HiC_scaffold_45_10191213  "0/0"        
## HiC_scaffold_45_12005885  "1/1"        
## HiC_scaffold_45_12006766  NA           
## HiC_scaffold_45_24736172  NA           
## HiC_scaffold_45_24739830  "0/0"        
## HiC_scaffold_46_9691567   "1|1"        
## HiC_scaffold_46_17380257  "0/0"        
## HiC_scaffold_46_18387147  "0/1"        
## HiC_scaffold_46_37092355  "0|1"        
## HiC_scaffold_46_39183624  NA           
## HiC_scaffold_46_39390547  "0/1"        
## HiC_scaffold_46_42964941  NA           
## HiC_scaffold_46_42986653  "1/1"        
## HiC_scaffold_46_52074364  "0/0"        
## HiC_scaffold_46_54255667  "0/1"        
## HiC_scaffold_47_3750532   "1/1"        
## HiC_scaffold_47_3751345   NA           
## HiC_scaffold_47_15400639  "1|1"        
## HiC_scaffold_47_24072414  "0/1"        
## HiC_scaffold_47_25273825  "0/0"        
## HiC_scaffold_48_8752752   "0/0"        
## HiC_scaffold_48_10765920  NA           
## HiC_scaffold_48_16077918  "0/0"        
## HiC_scaffold_48_16077940  "0/0"        
## HiC_scaffold_48_16411609  "1/1"        
## HiC_scaffold_48_19972580  "1/1"        
## HiC_scaffold_48_23493079  "0/0"        
## HiC_scaffold_48_23597210  NA           
## HiC_scaffold_48_24478493  NA           
## HiC_scaffold_48_24881148  "1/1"        
## HiC_scaffold_48_25865723  "0/0"        
## HiC_scaffold_48_25984068  "1|1"        
## HiC_scaffold_48_25989079  "1/1"        
## HiC_scaffold_48_30601375  "1|1"        
## HiC_scaffold_48_31662115  "1/1"        
## HiC_scaffold_48_41971562  "0/0"        
## HiC_scaffold_49_3392801   "0/0"        
## HiC_scaffold_49_6101692   "1/1"        
## HiC_scaffold_49_7996315   "0/0"        
## HiC_scaffold_49_9470474   "0/1"        
## HiC_scaffold_49_9886007   NA           
## HiC_scaffold_49_12592113  "1/1"        
## HiC_scaffold_49_12741575  "1/1"        
## HiC_scaffold_49_15135019  "1/1"        
## HiC_scaffold_49_25906219  NA           
## HiC_scaffold_49_26614199  "0/0"        
## HiC_scaffold_49_26655554  "0|1"        
## HiC_scaffold_49_37568341  "1|1"        
## HiC_scaffold_49_37568353  "1|1"        
## HiC_scaffold_49_40002255  NA           
## HiC_scaffold_49_40003229  "1|1"        
## HiC_scaffold_49_42966376  "0/0"        
## HiC_scaffold_5_801252     "1/1"        
## HiC_scaffold_5_1446603    "0/0"        
## HiC_scaffold_5_1446611    "0/0"        
## HiC_scaffold_5_1530759    NA           
## HiC_scaffold_5_1539275    "0/0"        
## HiC_scaffold_5_1789576    "0/0"        
## HiC_scaffold_5_1808197    "0/0"        
## HiC_scaffold_5_1808204    NA           
## HiC_scaffold_5_1943895    NA           
## HiC_scaffold_5_1944469    "1/1"        
## HiC_scaffold_5_2857283    "1/1"        
## HiC_scaffold_5_4061378    "1/1"        
## HiC_scaffold_5_4340647    "0/0"        
## HiC_scaffold_5_4435246    "1/1"        
## HiC_scaffold_5_8868783    NA           
## HiC_scaffold_50_4315969   "0/0"        
## HiC_scaffold_50_11652296  "1/1"        
## HiC_scaffold_50_11657309  "1/1"        
## HiC_scaffold_50_15521027  NA           
## HiC_scaffold_50_21050962  "0/0"        
## HiC_scaffold_50_23686202  NA           
## HiC_scaffold_50_27393462  NA           
## HiC_scaffold_50_42586883  "0/0"        
## HiC_scaffold_50_45087211  "0/0"        
## HiC_scaffold_50_49796550  "1/1"        
## HiC_scaffold_50_54383367  "0/0"        
## HiC_scaffold_50_63318678  "1/1"        
## HiC_scaffold_51_3521000   "0/0"        
## HiC_scaffold_51_4681905   "0/0"        
## HiC_scaffold_51_6305599   "0/0"        
## HiC_scaffold_51_8530818   "0/1"        
## HiC_scaffold_51_11653312  "1/1"        
## HiC_scaffold_51_13138547  "1/1"        
## HiC_scaffold_51_14457091  NA           
## HiC_scaffold_51_15512668  "0/0"        
## HiC_scaffold_51_17816346  "1/1"        
## HiC_scaffold_51_19997934  "1|1"        
## HiC_scaffold_51_19997936  "1|1"        
## HiC_scaffold_51_20870773  "0/0"        
## HiC_scaffold_51_26660104  "0/0"        
## HiC_scaffold_51_40727521  "0/0"        
## HiC_scaffold_51_40892841  "1/1"        
## HiC_scaffold_51_41717519  "1/1"        
## HiC_scaffold_51_42547638  "1/1"        
## HiC_scaffold_52_3335804   "1/1"        
## HiC_scaffold_52_4149130   "0/0"        
## HiC_scaffold_52_6893679   "1/1"        
## HiC_scaffold_52_13155416  "1/1"        
## HiC_scaffold_52_13155437  NA           
## HiC_scaffold_52_13155442  NA           
## HiC_scaffold_52_14885688  "0/0"        
## HiC_scaffold_52_14895078  NA           
## HiC_scaffold_52_15141791  "0/0"        
## HiC_scaffold_52_15743051  NA           
## HiC_scaffold_52_15760201  "0/0"        
## HiC_scaffold_52_15834589  NA           
## HiC_scaffold_52_15841769  "0/0"        
## HiC_scaffold_52_15862421  "1|1"        
## HiC_scaffold_52_15970970  "0/0"        
## HiC_scaffold_52_16275237  "0/1"        
## HiC_scaffold_52_16275240  "0|1"        
## HiC_scaffold_52_16275290  "1|1"        
## HiC_scaffold_52_16524164  "0/1"        
## HiC_scaffold_52_16524572  "1/1"        
## HiC_scaffold_52_16525647  "0/0"        
## HiC_scaffold_52_16637047  NA           
## HiC_scaffold_52_17202127  "0/0"        
## HiC_scaffold_52_17207724  "1/1"        
## HiC_scaffold_52_17508820  "1|1"        
## HiC_scaffold_52_17547593  "0/0"        
## HiC_scaffold_52_17551239  "0/1"        
## HiC_scaffold_52_17560696  NA           
## HiC_scaffold_52_17560699  NA           
## HiC_scaffold_52_17741250  "1/1"        
## HiC_scaffold_52_17742260  "1|1"        
## HiC_scaffold_52_18340578  NA           
## HiC_scaffold_52_18415911  "1/1"        
## HiC_scaffold_52_22189517  "0/0"        
## HiC_scaffold_52_22526592  NA           
## HiC_scaffold_52_26393471  "1/1"        
## HiC_scaffold_52_26799380  "0/0"        
## HiC_scaffold_52_31871931  "1/1"        
## HiC_scaffold_52_31874283  "1/1"        
## HiC_scaffold_52_31874287  "0/0"        
## HiC_scaffold_52_32161053  "1|1"        
## HiC_scaffold_52_33165557  "1/1"        
## HiC_scaffold_52_33897620  "0/0"        
## HiC_scaffold_52_34763156  "0/0"        
## HiC_scaffold_52_34763171  "0/1"        
## HiC_scaffold_52_35174755  "0/0"        
## HiC_scaffold_52_35608453  "0/0"        
## HiC_scaffold_52_35608470  "0/0"        
## HiC_scaffold_52_39464728  "0/0"        
## HiC_scaffold_52_42141354  "0/0"        
## HiC_scaffold_52_44675725  "0/1"        
## HiC_scaffold_52_49935920  NA           
## HiC_scaffold_53_21789524  "0/0"        
## HiC_scaffold_53_25168042  "0/0"        
## HiC_scaffold_53_26398989  "1|1"        
## HiC_scaffold_53_26398992  "1|1"        
## HiC_scaffold_53_26398994  "1|1"        
## HiC_scaffold_53_26549665  "0/0"        
## HiC_scaffold_53_29227676  "0|1"        
## HiC_scaffold_53_31250349  "1/1"        
## HiC_scaffold_54_530581    "1|1"        
## HiC_scaffold_54_794095    "1|1"        
## HiC_scaffold_54_1171109   "0|1"        
## HiC_scaffold_54_1378956   "0/0"        
## HiC_scaffold_54_1380539   "1/1"        
## HiC_scaffold_54_3045015   "1/1"        
## HiC_scaffold_54_3185987   "0/0"        
## HiC_scaffold_54_4401098   NA           
## HiC_scaffold_54_5595903   "0/0"        
## HiC_scaffold_54_5595921   "0/0"        
## HiC_scaffold_54_5595928   "1|1"        
## HiC_scaffold_54_5595949   "0/0"        
## HiC_scaffold_54_6649662   "1/1"        
## HiC_scaffold_54_8036734   NA           
## HiC_scaffold_54_9206614   NA           
## HiC_scaffold_54_35913192  "0/0"        
## HiC_scaffold_54_35913282  "1|1"        
## HiC_scaffold_54_35913283  "1|1"        
## HiC_scaffold_55_1260491   "0/0"        
## HiC_scaffold_55_3254027   "1/1"        
## HiC_scaffold_55_3281985   "1|1"        
## HiC_scaffold_55_5409544   "0/1"        
## HiC_scaffold_55_5411094   "1|1"        
## HiC_scaffold_55_5411115   "1/1"        
## HiC_scaffold_55_18121799  "0/0"        
## HiC_scaffold_55_19605809  "0/1"        
## HiC_scaffold_55_19605817  "1|1"        
## HiC_scaffold_55_19605821  "1|1"        
## HiC_scaffold_55_20195204  "0/0"        
## HiC_scaffold_55_20886967  "0/0"        
## HiC_scaffold_55_23222937  NA           
## HiC_scaffold_55_23626331  "1/1"        
## HiC_scaffold_55_24539590  "0/0"        
## HiC_scaffold_55_24585939  "0/0"        
## HiC_scaffold_55_34174151  "0/1"        
## HiC_scaffold_56_17874332  "0/0"        
## HiC_scaffold_56_18635259  NA           
## HiC_scaffold_56_23654344  "0/0"        
## HiC_scaffold_56_35850533  "0/1"        
## HiC_scaffold_56_35850539  "1/1"        
## HiC_scaffold_56_40813556  "1/1"        
## HiC_scaffold_56_53211633  "1/1"        
## HiC_scaffold_56_60070829  "1/1"        
## HiC_scaffold_56_73286017  NA           
## HiC_scaffold_56_73829442  "0/0"        
## HiC_scaffold_56_73829443  "0/0"        
## HiC_scaffold_56_76060304  "0/0"        
## HiC_scaffold_57_25306408  "1/1"        
## HiC_scaffold_57_29222385  NA           
## HiC_scaffold_57_29592432  "0/1"        
## HiC_scaffold_57_31472698  NA           
## HiC_scaffold_57_32371742  "0/1"        
## HiC_scaffold_57_36495072  "0/0"        
## HiC_scaffold_57_37286264  NA           
## HiC_scaffold_57_38537415  "0/0"        
## HiC_scaffold_57_45438854  "0/2"        
## HiC_scaffold_57_52856874  NA           
## HiC_scaffold_57_53575355  "1/1"        
## HiC_scaffold_57_55856783  "1/1"        
## HiC_scaffold_58_1362614   "1/1"        
## HiC_scaffold_58_1432845   "1/1"        
## HiC_scaffold_58_1541720   "0/0"        
## HiC_scaffold_58_2777120   "0/0"        
## HiC_scaffold_58_2973169   "1/1"        
## HiC_scaffold_58_3243043   "0/1"        
## HiC_scaffold_58_4035282   "0/1"        
## HiC_scaffold_58_5442157   NA           
## HiC_scaffold_58_8004631   NA           
## HiC_scaffold_58_8058998   "0/0"        
## HiC_scaffold_58_8932837   "0/0"        
## HiC_scaffold_58_14814944  "0/0"        
## HiC_scaffold_58_15639988  "0/1"        
## HiC_scaffold_58_15707198  "1/1"        
## HiC_scaffold_58_15707258  NA           
## HiC_scaffold_58_15710623  "0/0"        
## HiC_scaffold_58_19155063  "0/0"        
## HiC_scaffold_58_20224050  "1/1"        
## HiC_scaffold_58_38475355  "1/1"        
## HiC_scaffold_59_3979055   "0/0"        
## HiC_scaffold_59_5071810   "0|1"        
## HiC_scaffold_59_5349936   "0/1"        
## HiC_scaffold_59_5350114   "0/0"        
## HiC_scaffold_59_7738302   "0/0"        
## HiC_scaffold_59_7738351   "0/0"        
## HiC_scaffold_59_7958561   "0/0"        
## HiC_scaffold_59_9273798   "0/0"        
## HiC_scaffold_59_50928099  "1/1"        
## HiC_scaffold_59_52960060  "0/0"        
## HiC_scaffold_6_10569023   "0/0"        
## HiC_scaffold_6_10711445   "1/1"        
## HiC_scaffold_6_13209200   "0/1"        
## HiC_scaffold_6_13213107   "0/1"        
## HiC_scaffold_6_13311684   "0/0"        
## HiC_scaffold_6_15670783   NA           
## HiC_scaffold_6_19111232   "0/0"        
## HiC_scaffold_6_32805498   "1/1"        
## HiC_scaffold_6_38793174   "1|1"        
## HiC_scaffold_6_41092101   "0/0"        
## HiC_scaffold_6_41342933   "0|1"        
## HiC_scaffold_6_47594508   "0/0"        
## HiC_scaffold_60_70878     NA           
## HiC_scaffold_60_99549     "1|1"        
## HiC_scaffold_60_201823    "0/0"        
## HiC_scaffold_60_712969    NA           
## HiC_scaffold_60_744783    "1/1"        
## HiC_scaffold_60_744788    "0/1"        
## HiC_scaffold_60_22142128  "0/0"        
## HiC_scaffold_60_27599770  "1/1"        
## HiC_scaffold_60_30608878  "0/0"        
## HiC_scaffold_60_32657324  "0/1"        
## HiC_scaffold_60_32672580  NA           
## HiC_scaffold_60_38856893  "1/1"        
## HiC_scaffold_60_39028335  "1/1"        
## HiC_scaffold_60_40296869  "0/0"        
## HiC_scaffold_60_42775723  "0/0"        
## HiC_scaffold_60_44687906  NA           
## HiC_scaffold_60_44804601  "1/1"        
## HiC_scaffold_60_53696867  NA           
## HiC_scaffold_60_53696868  NA           
## HiC_scaffold_60_60651515  "1|1"        
## HiC_scaffold_60_70678462  "1/1"        
## HiC_scaffold_61_2205328   "1|1"        
## HiC_scaffold_61_2491706   "0|1"        
## HiC_scaffold_61_4009916   "1|1"        
## HiC_scaffold_61_4062917   "0/0"        
## HiC_scaffold_61_4122763   "1|1"        
## HiC_scaffold_61_4216461   "0/0"        
## HiC_scaffold_61_4325053   "0/1"        
## HiC_scaffold_61_9004838   NA           
## HiC_scaffold_61_14635083  NA           
## HiC_scaffold_62_1128608   "1/1"        
## HiC_scaffold_62_11335200  "0/0"        
## HiC_scaffold_62_18828476  "1/1"        
## HiC_scaffold_62_21548870  "1|1"        
## HiC_scaffold_62_23103274  "0/0"        
## HiC_scaffold_62_25793456  "1/1"        
## HiC_scaffold_62_25887474  "0/0"        
## HiC_scaffold_62_28516096  NA           
## HiC_scaffold_62_28516099  NA           
## HiC_scaffold_62_28818725  "0/0"        
## HiC_scaffold_62_28818729  "1/1"        
## HiC_scaffold_62_45207353  "1/1"        
## HiC_scaffold_63_3092269   "1/1"        
## HiC_scaffold_63_3977940   NA           
## HiC_scaffold_63_4084937   "0/0"        
## HiC_scaffold_63_4196326   NA           
## HiC_scaffold_63_6262453   "0/0"        
## HiC_scaffold_63_6350204   NA           
## HiC_scaffold_63_6458794   "0/0"        
## HiC_scaffold_64_9162978   "0/0"        
## HiC_scaffold_64_16876561  "0/0"        
## HiC_scaffold_64_17543009  NA           
## HiC_scaffold_64_18925356  "1/1"        
## HiC_scaffold_64_19133050  "0/0"        
## HiC_scaffold_64_19627769  "1|1"        
## HiC_scaffold_64_20477250  NA           
## HiC_scaffold_64_22816677  "1/1"        
## HiC_scaffold_64_22954654  "0/0"        
## HiC_scaffold_64_22954658  "0/0"        
## HiC_scaffold_64_22954682  NA           
## HiC_scaffold_65_6829971   "0/0"        
## HiC_scaffold_65_8071102   "0/0"        
## HiC_scaffold_65_9023979   NA           
## HiC_scaffold_65_9839671   "0/0"        
## HiC_scaffold_65_10404778  NA           
## HiC_scaffold_65_11327791  NA           
## HiC_scaffold_65_11332104  "1|1"        
## HiC_scaffold_65_34823822  "1|1"        
## HiC_scaffold_65_51418017  "1/1"        
## HiC_scaffold_65_54053979  "1|1"        
## HiC_scaffold_65_57110875  "0/0"        
## HiC_scaffold_66_15615363  "0/1"        
## HiC_scaffold_66_15672090  "0/1"        
## HiC_scaffold_66_17903445  "0/0"        
## HiC_scaffold_66_18298629  "1|1"        
## HiC_scaffold_66_19730676  NA           
## HiC_scaffold_66_23688768  "1/1"        
## HiC_scaffold_66_26614535  NA           
## HiC_scaffold_66_27445665  NA           
## HiC_scaffold_66_29457165  "0/1"        
## HiC_scaffold_66_29457180  "0/1"        
## HiC_scaffold_66_30116287  NA           
## HiC_scaffold_66_31603503  "1|1"        
## HiC_scaffold_66_33261460  "0/0"        
## HiC_scaffold_66_34138981  NA           
## HiC_scaffold_66_34139020  "0/0"        
## HiC_scaffold_66_34142862  "0/0"        
## HiC_scaffold_67_1404390   "0/0"        
## HiC_scaffold_67_28493665  "1|1"        
## HiC_scaffold_67_30243885  "1|1"        
## HiC_scaffold_67_31511806  "0|1"        
## HiC_scaffold_67_34638092  "0/1"        
## HiC_scaffold_67_37534720  "0/0"        
## HiC_scaffold_67_39679546  "1/1"        
## HiC_scaffold_67_39854918  "0|1"        
## HiC_scaffold_67_39860738  "1/1"        
## HiC_scaffold_67_40331656  "0/0"        
## HiC_scaffold_67_40824747  "1|1"        
## HiC_scaffold_68_3438132   "1|1"        
## HiC_scaffold_68_3438133   "1|1"        
## HiC_scaffold_68_11206902  "0/0"        
## HiC_scaffold_68_32770607  "0/0"        
## HiC_scaffold_68_34016823  "0/0"        
## HiC_scaffold_68_34020019  NA           
## HiC_scaffold_68_40296057  "1|1"        
## HiC_scaffold_68_40296059  "1|1"        
## HiC_scaffold_68_65001879  "0/0"        
## HiC_scaffold_69_23311147  "2|2"        
## HiC_scaffold_69_27351303  "1/1"        
## HiC_scaffold_69_29437208  "1|1"        
## HiC_scaffold_69_33699381  "1|1"        
## HiC_scaffold_69_40194698  "0/0"        
## HiC_scaffold_69_48273575  "0/0"        
## HiC_scaffold_69_48348026  "0/0"        
## HiC_scaffold_69_48348034  "0/0"        
## HiC_scaffold_69_49563252  "0/1"        
## HiC_scaffold_69_49593952  "1/1"        
## HiC_scaffold_69_49859037  "0|1"        
## HiC_scaffold_69_51271238  "1/1"        
## HiC_scaffold_69_51529836  "0/0"        
## HiC_scaffold_69_57313650  "1/1"        
## HiC_scaffold_69_57359194  "0/1"        
## HiC_scaffold_6951_523650  "0/1"        
## HiC_scaffold_6951_897126  "0/0"        
## HiC_scaffold_6951_1134482 NA           
## HiC_scaffold_6951_2484960 "1/1"        
## HiC_scaffold_6951_3301273 "1/1"        
## HiC_scaffold_6951_3314609 NA           
## HiC_scaffold_6951_3945993 "1|1"        
## HiC_scaffold_6958_218293  "1|1"        
## HiC_scaffold_6958_449143  "1/1"        
## HiC_scaffold_7_351023     "1/1"        
## HiC_scaffold_7_488024     NA           
## HiC_scaffold_7_492663     "0/0"        
## HiC_scaffold_7_693567     "0/0"        
## HiC_scaffold_7_2379128    "0/1"        
## HiC_scaffold_7_3087721    "1/1"        
## HiC_scaffold_7_3394880    "1/1"        
## HiC_scaffold_7_22247106   NA           
## HiC_scaffold_70_4632611   "0/0"        
## HiC_scaffold_70_14042778  "0/0"        
## HiC_scaffold_71_410844    NA           
## HiC_scaffold_71_1753451   "0/1"        
## HiC_scaffold_71_2283682   "0|1"        
## HiC_scaffold_71_3439685   "0|0"        
## HiC_scaffold_71_17850462  "1/1"        
## HiC_scaffold_71_20588314  "0/0"        
## HiC_scaffold_71_25465351  NA           
## HiC_scaffold_71_25465352  NA           
## HiC_scaffold_71_26356062  "1/1"        
## HiC_scaffold_72_11785096  "0/1"        
## HiC_scaffold_72_17285854  "0/1"        
## HiC_scaffold_72_23704999  NA           
## HiC_scaffold_72_24465318  "0|1"        
## HiC_scaffold_72_30457277  "0/1"        
## HiC_scaffold_72_32068649  "1/1"        
## HiC_scaffold_72_35058295  NA           
## HiC_scaffold_72_36024997  "0/1"        
## HiC_scaffold_72_37135067  NA           
## HiC_scaffold_72_38410141  "1/1"        
## HiC_scaffold_72_38448056  "0/0"        
## HiC_scaffold_72_41412511  NA           
## HiC_scaffold_73_2192629   "1|1"        
## HiC_scaffold_73_2920208   NA           
## HiC_scaffold_73_4522493   "1|1"        
## HiC_scaffold_73_4748625   "1/1"        
## HiC_scaffold_73_5839336   "1/1"        
## HiC_scaffold_73_9338582   "0/0"        
## HiC_scaffold_73_27393859  "0/0"        
## HiC_scaffold_74_14235619  "0/1"        
## HiC_scaffold_74_14515598  "1/1"        
## HiC_scaffold_74_15116121  "1|1"        
## HiC_scaffold_74_17233613  NA           
## HiC_scaffold_74_17725340  "0|1"        
## HiC_scaffold_74_18418135  NA           
## HiC_scaffold_74_18418138  NA           
## HiC_scaffold_74_21254425  "1/1"        
## HiC_scaffold_74_22261065  "1/1"        
## HiC_scaffold_74_47132519  "0/0"        
## HiC_scaffold_74_50979096  "1/1"        
## HiC_scaffold_74_51060549  "1/1"        
## HiC_scaffold_74_53256803  "1/1"        
## HiC_scaffold_74_55464169  "0/1"        
## HiC_scaffold_74_55515512  "0/0"        
## HiC_scaffold_74_55999260  "0/0"        
## HiC_scaffold_74_57404902  "0/0"        
## HiC_scaffold_74_58181927  "0/0"        
## HiC_scaffold_74_58198600  "1/1"        
## HiC_scaffold_74_63060195  "1/1"        
## HiC_scaffold_75_5345466   "0/0"        
## HiC_scaffold_75_5346522   "0/0"        
## HiC_scaffold_75_5346535   "0/0"        
## HiC_scaffold_75_9850973   NA           
## HiC_scaffold_76_27149820  "0|0"        
## HiC_scaffold_76_31582908  NA           
## HiC_scaffold_76_31792815  "0/0"        
## HiC_scaffold_76_35352820  "0/0"        
## HiC_scaffold_76_57782171  "0/0"        
## HiC_scaffold_76_59862401  "1|1"        
## HiC_scaffold_76_61095594  "0/0"        
## HiC_scaffold_76_65496128  "0/0"        
## HiC_scaffold_76_68965847  "0/0"        
## HiC_scaffold_76_68966411  "0/0"        
## HiC_scaffold_76_69823482  NA           
## HiC_scaffold_76_73343841  "0/1"        
## HiC_scaffold_77_3598274   "0/0"        
## HiC_scaffold_77_6982137   "0/0"        
## HiC_scaffold_77_11021994  "0/1"        
## HiC_scaffold_77_13608165  "0/0"        
## HiC_scaffold_77_16888594  "0|0"        
## HiC_scaffold_77_16888623  "1|1"        
## HiC_scaffold_77_16889448  "1/1"        
## HiC_scaffold_77_39784685  "0/1"        
## HiC_scaffold_77_44375866  "1/1"        
## HiC_scaffold_77_45385370  "1/1"        
## HiC_scaffold_78_5719919   "0/1"        
## HiC_scaffold_78_11353297  "0/0"        
## HiC_scaffold_78_27316392  "0/0"        
## HiC_scaffold_78_48124809  "0/0"        
## HiC_scaffold_78_48124826  NA           
## HiC_scaffold_78_48126176  "0/0"        
## HiC_scaffold_78_48279096  "0/1"        
## HiC_scaffold_78_48434558  NA           
## HiC_scaffold_78_49759181  "0/0"        
## HiC_scaffold_78_49759192  "0/1"        
## HiC_scaffold_78_49759215  "0/1"        
## HiC_scaffold_78_51364025  "1/1"        
## HiC_scaffold_78_55395445  "0/0"        
## HiC_scaffold_78_59610866  "1/1"        
## HiC_scaffold_78_62136661  "1/1"        
## HiC_scaffold_79_1643780   "1/1"        
## HiC_scaffold_79_2519178   "1/1"        
## HiC_scaffold_79_2858100   "0/0"        
## HiC_scaffold_79_3922454   "0/0"        
## HiC_scaffold_79_4127878   "1|1"        
## HiC_scaffold_79_4543693   "0/0"        
## HiC_scaffold_79_11507678  NA           
## HiC_scaffold_79_12618812  "1/1"        
## HiC_scaffold_79_14185404  "1|1"        
## HiC_scaffold_79_17120237  NA           
## HiC_scaffold_79_17120254  NA           
## HiC_scaffold_79_35551507  "1/1"        
## HiC_scaffold_79_35551543  "1/1"        
## HiC_scaffold_79_38927423  "0/0"        
## HiC_scaffold_79_42623307  "0/0"        
## HiC_scaffold_79_43179786  "0/1"        
## HiC_scaffold_79_43180099  "0/0"        
## HiC_scaffold_79_43828078  "0/0"        
## HiC_scaffold_79_43872513  "0/1"        
## HiC_scaffold_79_44627215  NA           
## HiC_scaffold_79_50772769  NA           
## HiC_scaffold_79_55468575  "0/0"        
## HiC_scaffold_79_55816114  "0/0"        
## HiC_scaffold_79_59915784  "0/0"        
## HiC_scaffold_79_60165298  "0/0"        
## HiC_scaffold_79_60165305  NA           
## HiC_scaffold_79_69145556  "0/0"        
## HiC_scaffold_79_70208305  "0/0"        
## HiC_scaffold_79_73412292  "0/0"        
## HiC_scaffold_79_73416663  "0/0"        
## HiC_scaffold_79_73416688  "0/0"        
## HiC_scaffold_79_76863102  "0/0"        
## HiC_scaffold_79_81279649  "0/0"        
## HiC_scaffold_79_81499990  "1/1"        
## HiC_scaffold_79_82319836  "0/0"        
## HiC_scaffold_79_82319849  "0/0"        
## HiC_scaffold_79_83163707  "1/1"        
## HiC_scaffold_79_86283512  "1/1"        
## HiC_scaffold_79_87123758  "1|1"        
## HiC_scaffold_79_88362889  "1/1"        
## HiC_scaffold_79_88599431  "1/1"        
## HiC_scaffold_79_89322919  "1/1"        
## HiC_scaffold_79_89331918  "1/1"        
## HiC_scaffold_79_91340958  "0/0"        
## HiC_scaffold_8_13649836   "1/1"        
## HiC_scaffold_8_13650752   "0/0"        
## HiC_scaffold_8_23818233   "1/1"        
## HiC_scaffold_8_24123972   "1|1"        
## HiC_scaffold_8_24230791   "0|1"        
## HiC_scaffold_8_24588423   "0/0"        
## HiC_scaffold_8_25348483   NA           
## HiC_scaffold_8_25421933   "1/1"        
## HiC_scaffold_8_25772942   "0/0"        
## HiC_scaffold_8_26289589   "0/1"        
## HiC_scaffold_8_27602740   "0/0"        
## HiC_scaffold_8_28159063   "0/1"        
## HiC_scaffold_8_30829320   NA           
## HiC_scaffold_8_31044084   "0/0"        
## HiC_scaffold_8_31415507   "0/0"        
## HiC_scaffold_8_32594682   NA           
## HiC_scaffold_80_3617847   "1/1"        
## HiC_scaffold_80_5758183   "0/0"        
## HiC_scaffold_80_6760006   "0/0"        
## HiC_scaffold_80_6760037   "0/0"        
## HiC_scaffold_80_7772622   "1/1"        
## HiC_scaffold_80_7919533   "0/1"        
## HiC_scaffold_80_8110052   "0/0"        
## HiC_scaffold_80_8193366   "1/1"        
## HiC_scaffold_80_8625784   NA           
## HiC_scaffold_80_8912846   "0/0"        
## HiC_scaffold_80_9544102   "0/0"        
## HiC_scaffold_80_10770701  "1/1"        
## HiC_scaffold_80_11590146  "0/0"        
## HiC_scaffold_80_16953653  "0/1"        
## HiC_scaffold_80_18938832  "0/0"        
## HiC_scaffold_80_19015946  "0/0"        
## HiC_scaffold_80_19404001  NA           
## HiC_scaffold_80_25346708  "0/0"        
## HiC_scaffold_80_37479851  "0/0"        
## HiC_scaffold_80_37507516  NA           
## HiC_scaffold_81_1187192   "0/0"        
## HiC_scaffold_81_2689826   "0|1"        
## HiC_scaffold_81_2690751   NA           
## HiC_scaffold_81_6614123   "0/0"        
## HiC_scaffold_81_7836855   "0/1"        
## HiC_scaffold_81_10334868  "0/0"        
## HiC_scaffold_81_10458752  "1/1"        
## HiC_scaffold_81_17515538  "1/1"        
## HiC_scaffold_81_40271282  "0/0"        
## HiC_scaffold_81_40271294  "1/1"        
## HiC_scaffold_81_41096427  NA           
## HiC_scaffold_81_41096444  NA           
## HiC_scaffold_81_43820595  "0/1"        
## HiC_scaffold_81_43820732  NA           
## HiC_scaffold_81_43854278  "1/1"        
## HiC_scaffold_81_44804862  "1/1"        
## HiC_scaffold_81_45063428  "0|1"        
## HiC_scaffold_81_45950590  "0/0"        
## HiC_scaffold_81_46714752  "1|1"        
## HiC_scaffold_81_46714759  "0/0"        
## HiC_scaffold_81_47170397  "1|1"        
## HiC_scaffold_81_47628201  "0/0"        
## HiC_scaffold_81_48105216  "0/0"        
## HiC_scaffold_81_48932070  "0/1"        
## HiC_scaffold_81_54050146  "1/1"        
## HiC_scaffold_82_5672063   "1|1"        
## HiC_scaffold_82_8796823   "0/1"        
## HiC_scaffold_82_13450959  "0/0"        
## HiC_scaffold_82_26144442  "0|1"        
## HiC_scaffold_82_26147011  "1|1"        
## HiC_scaffold_82_28907834  "1/1"        
## HiC_scaffold_82_34413793  "0/1"        
## HiC_scaffold_82_34413800  "0/0"        
## HiC_scaffold_82_36173035  "1/1"        
## HiC_scaffold_82_40539273  "0/0"        
## HiC_scaffold_82_41470256  "1/1"        
## HiC_scaffold_83_23993605  NA           
## HiC_scaffold_83_35035961  "0/0"        
## HiC_scaffold_83_43423618  "0/0"        
## HiC_scaffold_83_46920654  "0/0"        
## HiC_scaffold_83_46934197  NA           
## HiC_scaffold_84_356301    "0/0"        
## HiC_scaffold_84_5761817   NA           
## HiC_scaffold_84_5769022   "0/0"        
## HiC_scaffold_84_6288130   "0/0"        
## HiC_scaffold_84_6288141   "1/1"        
## HiC_scaffold_84_6288147   "0/1"        
## HiC_scaffold_84_7069238   "0/0"        
## HiC_scaffold_84_9131309   "0/0"        
## HiC_scaffold_84_10148442  "0/0"        
## HiC_scaffold_84_14659391  NA           
## HiC_scaffold_84_16302752  NA           
## HiC_scaffold_84_18463244  "1/1"        
## HiC_scaffold_84_22909575  NA           
## HiC_scaffold_84_29275266  NA           
## HiC_scaffold_84_31184610  "1/1"        
## HiC_scaffold_84_33093169  NA           
## HiC_scaffold_84_37675180  "1/1"        
## HiC_scaffold_84_39501814  "0/0"        
## HiC_scaffold_84_50169438  NA           
## HiC_scaffold_84_50169445  NA           
## HiC_scaffold_84_51231025  "1/1"        
## HiC_scaffold_85_9792207   "0/0"        
## HiC_scaffold_85_11784233  NA           
## HiC_scaffold_85_11911022  "0/0"        
## HiC_scaffold_85_11911142  NA           
## HiC_scaffold_85_11913828  "0/0"        
## HiC_scaffold_85_11913831  "1/1"        
## HiC_scaffold_85_12353081  NA           
## HiC_scaffold_85_12414551  "0/1"        
## HiC_scaffold_85_13043967  "0|1"        
## HiC_scaffold_85_13221888  "1/1"        
## HiC_scaffold_85_27008863  "0/0"        
## HiC_scaffold_85_28992264  NA           
## HiC_scaffold_85_28992268  NA           
## HiC_scaffold_85_64310850  "0/0"        
## HiC_scaffold_85_65135112  "0/0"        
## HiC_scaffold_85_65563529  "0/0"        
## HiC_scaffold_86_1949664   "0/0"        
## HiC_scaffold_86_5340423   NA           
## HiC_scaffold_86_5483991   "0/0"        
## HiC_scaffold_86_8928469   "0/0"        
## HiC_scaffold_86_23727924  "1|1"        
## HiC_scaffold_86_24825818  "1|1"        
## HiC_scaffold_86_25333718  NA           
## HiC_scaffold_86_29668168  "0/1"        
## HiC_scaffold_86_30914243  "0/0"        
## HiC_scaffold_86_32040320  "0/0"        
## HiC_scaffold_86_32040329  "0/0"        
## HiC_scaffold_86_32125061  "1/1"        
## HiC_scaffold_86_32144758  NA           
## HiC_scaffold_86_32153692  "0/0"        
## HiC_scaffold_86_32534129  "1/1"        
## HiC_scaffold_86_32605768  "0/0"        
## HiC_scaffold_86_36355399  "1/1"        
## HiC_scaffold_86_36357265  "1/1"        
## HiC_scaffold_87_1253643   "1/1"        
## HiC_scaffold_87_2137958   NA           
## HiC_scaffold_87_3980100   "1/1"        
## HiC_scaffold_87_4395923   "0/0"        
## HiC_scaffold_87_5489328   "1|1"        
## HiC_scaffold_87_6300441   "1/1"        
## HiC_scaffold_87_16306904  NA           
## HiC_scaffold_87_44780945  "1|1"        
## HiC_scaffold_88_5584327   "0/1"        
## HiC_scaffold_88_7104630   "1|1"        
## HiC_scaffold_88_7104631   "1|1"        
## HiC_scaffold_88_7104638   "1|1"        
## HiC_scaffold_88_7104639   "1|1"        
## HiC_scaffold_88_7104640   "1|1"        
## HiC_scaffold_88_7479340   NA           
## HiC_scaffold_88_8773607   "1|1"        
## HiC_scaffold_88_9883678   "1|1"        
## HiC_scaffold_88_10878718  "0/0"        
## HiC_scaffold_88_19365116  "1/1"        
## HiC_scaffold_88_20477349  NA           
## HiC_scaffold_88_20557885  "1/1"        
## HiC_scaffold_89_675045    "0/0"        
## HiC_scaffold_89_2815845   "1/1"        
## HiC_scaffold_89_2843940   "0/0"        
## HiC_scaffold_89_3018830   "1/1"        
## HiC_scaffold_89_13745506  "0/1"        
## HiC_scaffold_89_30006907  "1/1"        
## HiC_scaffold_89_36509388  "0/0"        
## HiC_scaffold_89_38703735  "0/0"        
## HiC_scaffold_89_38764895  "1/1"        
## HiC_scaffold_89_42052609  "0/1"        
## HiC_scaffold_89_42054991  "0/1"        
## HiC_scaffold_89_44306958  "0/1"        
## HiC_scaffold_89_44338206  NA           
## HiC_scaffold_89_45298973  "1/1"        
## HiC_scaffold_9_3529921    NA           
## HiC_scaffold_9_5660454    "1|1"        
## HiC_scaffold_9_5660461    "1|1"        
## HiC_scaffold_9_5854070    "0/0"        
## HiC_scaffold_9_6142415    NA           
## HiC_scaffold_9_6142436    NA           
## HiC_scaffold_9_6143781    "0/0"        
## HiC_scaffold_9_6654825    "1/1"        
## HiC_scaffold_9_7094545    NA           
## HiC_scaffold_9_7100208    "1|1"        
## HiC_scaffold_9_7109988    "0/0"        
## HiC_scaffold_9_7111922    "0/1"        
## HiC_scaffold_9_8235781    "0/0"        
## HiC_scaffold_9_8279558    "1/1"        
## HiC_scaffold_9_15679481   NA           
## HiC_scaffold_9_18082611   "0/0"        
## HiC_scaffold_9_18090830   "0/1"        
## HiC_scaffold_9_30240531   "0/0"        
## HiC_scaffold_90_10418696  "0/0"        
## HiC_scaffold_90_11470224  "0/0"        
## HiC_scaffold_90_13593319  "0/0"        
## HiC_scaffold_90_16260161  "0/0"        
## HiC_scaffold_90_22325499  "1/1"        
## HiC_scaffold_90_23574204  "0/0"        
## HiC_scaffold_90_23609908  "0/0"        
## HiC_scaffold_90_23623078  "1|1"        
## HiC_scaffold_90_23626883  NA           
## HiC_scaffold_90_23812663  NA           
## HiC_scaffold_90_25939283  "1/1"        
## HiC_scaffold_90_25985714  NA           
## HiC_scaffold_90_30751272  "0/0"        
## HiC_scaffold_90_31232025  NA           
## HiC_scaffold_90_31245699  NA           
## HiC_scaffold_90_31527975  "0/0"        
## HiC_scaffold_90_31546172  NA           
## HiC_scaffold_90_38511996  "0/0"        
## HiC_scaffold_90_38511999  NA           
## HiC_scaffold_90_38517279  "1/1"        
## HiC_scaffold_90_40624104  "1/1"        
## HiC_scaffold_91_5644765   "1|1"        
## HiC_scaffold_91_5867214   "0/0"        
## HiC_scaffold_91_5867226   "0/0"        
## HiC_scaffold_91_7704263   "0/0"        
## HiC_scaffold_91_7871360   "0/0"        
## HiC_scaffold_91_8538014   "1/1"        
## HiC_scaffold_91_13230485  "1|1"        
## HiC_scaffold_91_28696118  "1/1"        
## HiC_scaffold_91_28696625  "1|1"        
## HiC_scaffold_91_42177482  "0/0"        
## HiC_scaffold_91_46813640  "0/0"        
## HiC_scaffold_92_23783035  "0/0"        
## HiC_scaffold_92_23783036  "0/0"        
## HiC_scaffold_92_24712793  "0/0"        
## HiC_scaffold_92_28698258  "0/1"        
## HiC_scaffold_92_40691582  "0/0"        
## HiC_scaffold_92_43967712  "1/1"        
## HiC_scaffold_92_47147572  "0/0"        
## HiC_scaffold_92_49042714  "0|1"        
## HiC_scaffold_92_49042715  "0|1"        
## HiC_scaffold_92_53634002  "1/1"        
## HiC_scaffold_92_58211868  "0/0"        
## HiC_scaffold_92_60114155  NA           
## HiC_scaffold_92_63603483  "0/0"        
## HiC_scaffold_92_64797225  "0/0"        
## HiC_scaffold_92_68367476  "0/0"        
## HiC_scaffold_93_1912167   NA           
## HiC_scaffold_93_2485978   "0/0"        
## HiC_scaffold_93_3227638   "0/1"        
## HiC_scaffold_93_3227641   "0/1"        
## HiC_scaffold_93_13971208  NA           
## HiC_scaffold_93_13987080  NA           
## HiC_scaffold_93_21125468  "0/0"        
## HiC_scaffold_93_21845293  "0/0"        
## HiC_scaffold_93_21845310  "1|1"        
## HiC_scaffold_93_21846342  "0/0"        
## HiC_scaffold_93_21846356  "1/1"        
## HiC_scaffold_93_22589723  "1/1"        
## HiC_scaffold_93_22619278  "1/1"        
## HiC_scaffold_93_22631258  "0/0"        
## HiC_scaffold_93_22631266  "0/0"        
## HiC_scaffold_94_3110102   "1/1"        
## HiC_scaffold_94_3205919   "1/1"        
## HiC_scaffold_94_9023846   "0/1"        
## HiC_scaffold_94_11572820  "1/1"        
## HiC_scaffold_94_12368532  "1/1"        
## HiC_scaffold_94_42179418  "1/1"        
## HiC_scaffold_94_42179519  "0/0"        
## HiC_scaffold_94_51646206  NA           
## HiC_scaffold_94_52781289  NA           
## HiC_scaffold_94_53790035  "0/0"        
## HiC_scaffold_94_53792738  NA           
## HiC_scaffold_94_56768905  "1|1"        
## HiC_scaffold_946_81276    NA           
## HiC_scaffold_95_3189690   "1/1"        
## HiC_scaffold_95_4397298   NA           
## HiC_scaffold_95_9469157   NA           
## HiC_scaffold_95_10641411  "0/1"        
## HiC_scaffold_95_10949821  "1/1"        
## HiC_scaffold_95_12993394  "0|1"        
## HiC_scaffold_95_15515793  NA           
## HiC_scaffold_95_15608785  NA           
## HiC_scaffold_95_15609137  "0/0"        
## HiC_scaffold_95_16295316  "1/1"        
## HiC_scaffold_95_22656165  NA           
## HiC_scaffold_95_25885727  "0/1"        
## HiC_scaffold_96_10460019  NA           
## HiC_scaffold_96_27155785  "0/0"        
## HiC_scaffold_96_37939434  "0/0"        
## HiC_scaffold_96_51115048  NA           
## HiC_scaffold_96_51116511  NA           
## HiC_scaffold_96_51915040  NA           
## HiC_scaffold_96_52681287  "0/1"        
## HiC_scaffold_96_53276519  "0/0"        
## HiC_scaffold_97_1736926   "0|1"        
## HiC_scaffold_97_1736994   "0/0"        
## HiC_scaffold_97_3863543   "1/1"        
## HiC_scaffold_97_4200445   "0/1"        
## HiC_scaffold_97_4799162   "0/0"        
## HiC_scaffold_97_5027892   "1/1"        
## HiC_scaffold_97_8007933   NA           
## HiC_scaffold_97_17997210  "0/0"        
## HiC_scaffold_97_18604647  NA           
## HiC_scaffold_97_20239636  "0/0"        
## HiC_scaffold_98_15154096  "0/0"        
## HiC_scaffold_98_22342667  NA           
## HiC_scaffold_98_22634293  "1|1"        
## HiC_scaffold_98_22634294  "1|1"        
## HiC_scaffold_98_22721138  "0|1"        
## HiC_scaffold_98_22869378  "0/0"        
## HiC_scaffold_98_24108405  "0/0"        
## HiC_scaffold_98_27359592  NA           
## HiC_scaffold_98_28549834  "0/0"        
## HiC_scaffold_98_28867520  "0/1"        
## HiC_scaffold_98_28867524  "0/1"        
## HiC_scaffold_98_29431717  NA           
## HiC_scaffold_98_29675109  "0/0"        
## HiC_scaffold_99_1163244   "0/0"        
## HiC_scaffold_99_1451611   NA           
## HiC_scaffold_99_2021961   "0/0"        
## HiC_scaffold_99_5134392   "0/0"        
## HiC_scaffold_99_5239109   "0/0"        
## HiC_scaffold_99_6917738   NA           
## HiC_scaffold_99_11221970  "0/0"        
## HiC_scaffold_99_25982503  "1/1"

# Confirm order of samples in vcf matches order of samples in the "sample.info" dataframe 
all(colnames(extract.gt(vcf)) == sample.info$Sample) # no, not in same order. Need to create a re-ordered sample.info object

## [1] FALSE

sample.info.vcf <- sample.info %>% dplyr::slice(match(colnames(extract.gt(vcf)), Sample)) %>%
  mutate(Treatment=as.factor(Treatment))

# How many samples per pH treatment?
nsamples <- sample.info.vcf[match(colnames(extract.gt(vcf)), sample.info.vcf$Sample),] %>% group_by(Treatment) %>% tally()

# Calculate differentiation / diversity stats for each treatment
myDiff <- genetic_diff(vcf, pops = sample.info.vcf$Treatment, method = 'nei')
paste("No. SNPs included in this vcfR analysis ", nrow(myDiff), sep="")

## [1] "No. SNPs included in this vcfR analysis 1429"

# Summarize diversity indices (mean)
knitr::kable(round(colMeans(myDiff[,-1:-2], na.rm = TRUE), digits = 3))

	x
Hs_Ambient	0.406
Hs_Low	0.410
Hs_Moderate	0.406
Ht	0.426
n_Ambient	23.475
n_Low	26.318
n_Moderate	22.161
Gst	0.043
Htmax	0.800
Gstmax	0.495
Gprimest	0.086

Heterozygosity by pH Treatment

dpf <- melt(myDiff[,c(3:5)], varnames=c('Index', 'Sample'), value.name = 'Depth', na.rm=TRUE) %>%
  mutate(Treatment=as.factor(substring(variable, 4)))

## No id variables; using all as measure variables

ggplot(dpf, aes(x=Treatment, y=Depth)) + 
  geom_violin(aes(fill=Treatment), adjust = 1.2, alpha=0.75) + 
  xlab("") + ylab("") + theme_bw() +
    theme(axis.text.x = element_text(size=7, angle=50, hjust=1)) + 
  ggtitle(paste("Heterozygosity by pH Treatment \nNo. SNPs =", nrow(myDiff))) +
        stat_summary(fun.y=mean, geom="point", shape=15, size=3, color="black", fill="black") +
    geom_text(data=dpf %>% group_by(Treatment) %>% 
                summarize(mean=mean(Depth)), aes(x=Treatment, y=.45, label=round(mean, 4)), size=3) +
  scale_fill_manual(values = c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"))

## Warning: `fun.y` is deprecated. Use `fun` instead.

Allelic richness - but that seems to be skewed by missing samples and data for SNPs

dpf.n <- melt(myDiff[,c(7:9)], varnames=c('Index', 'Sample'), value.name = 'Depth', na.rm=TRUE) %>%
  mutate(Treatment=as.factor(substring(variable, 3)))

## No id variables; using all as measure variables

ggplot(dpf.n, aes(x=Treatment, y=Depth)) + 
  geom_violin(aes(fill=Treatment), adjust = 1.2, alpha=0.75) + 
  xlab("") + ylab("") + theme_bw() +
    theme(axis.text.x = element_text(size=7, angle=50, hjust=1)) + 
  ggtitle(paste("Allelic Richnes by pH Treatment \nNo. SNPs =", nrow(myDiff))) +
        stat_summary(fun.y=mean, geom="point", shape=15, size=3, color="black", fill="black") +
    geom_text(data=dpf %>% group_by(Treatment) %>% 
                summarize(mean=mean(Depth)), aes(x=Treatment, y=31, label=round(mean, 4)), size=3) +
  scale_fill_manual(values = c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"))

## Warning: `fun.y` is deprecated. Use `fun` instead.

Are there any SNPs located in genes that are differentially expressed?

# Use vcfR to generate a dataframe with snp location information. Also generates a ton of other info 
(snps.map <- genetic_diff(vcf, pops = as.factor(sample.info.vcf$Treatment), method = 'nei') %>% 
  mutate(POS=as.numeric(POS)) %>% mutate(start=POS-1, end=POS+1) %>% rename("CHROM"="chrom"))

##                  chrom      POS Hs_Ambient     Hs_Low Hs_Moderate         Ht
## 1       HiC_scaffold_1  2523394 0.45266272 0.47337278  0.49586777 0.47662527
## 2       HiC_scaffold_1  2542157 0.39669421 0.46875000  0.48611111 0.45918367
## 3       HiC_scaffold_1  2647806 0.32000000 0.32000000  0.41319444 0.35390796
## 4       HiC_scaffold_1  2970226 0.39349112 0.47704082  0.42603550 0.43875000
## 5       HiC_scaffold_1  3329447 0.27218935 0.40625000  0.14201183 0.27804709
## 6       HiC_scaffold_1  3795100 0.49500000 0.48000000  0.35123967 0.47530864
## 7      HiC_scaffold_10  2221345 0.46280992 0.50000000  0.43388430 0.48000000
## 8      HiC_scaffold_10  2299490 0.43622449 0.44444444  0.44444444 0.44122449
## 9      HiC_scaffold_10  2565301 0.50000000 0.49744898  0.48000000 0.49632653
## 10     HiC_scaffold_10  3864355 0.49704142 0.35123967  0.49586777 0.49346939
## 11     HiC_scaffold_10  4319900 0.43622449 0.48816568  0.46875000 0.49959184
## 12     HiC_scaffold_10  4319907 0.43622449 0.48816568  0.46875000 0.49959184
## 13     HiC_scaffold_10  5404579 0.37500000 0.44444444  0.45500000 0.42841490
## 14     HiC_scaffold_10  5843373 0.45500000 0.48979592  0.45266272 0.47041636
## 15    HiC_scaffold_100   854947 0.42603550 0.47337278  0.39669421 0.43827611
## 16    HiC_scaffold_100  1070817 0.49652778 0.43622449  0.44444444 0.49632653
## 17    HiC_scaffold_100  2002094 0.49408284 0.48979592  0.61538462 0.56156250
## 18    HiC_scaffold_100  2002097 0.45266272 0.48979592  0.49704142 0.49968750
## 19    HiC_scaffold_100  2010331 0.48816568 0.48816568  0.50000000 0.49382716
## 20    HiC_scaffold_100  5186498 0.21875000 0.26035503  0.00000000 0.17554012
## 21    HiC_scaffold_100  5828477 0.45266272 0.48979592  0.42000000 0.46347699
## 22    HiC_scaffold_100  6470419 0.39669421 0.47337278  0.48611111 0.46141975
## 23    HiC_scaffold_100  6739225 0.41319444 0.47704082  0.45500000 0.49035494
## 24    HiC_scaffold_100  6739258 0.47337278 0.50000000  0.46280992 0.48753463
## 25    HiC_scaffold_100  6739264 0.44444444 0.50000000  0.46280992 0.48210373
## 26    HiC_scaffold_100  6907177 0.44444444 0.44444444  0.47530864 0.45331790
## 27    HiC_scaffold_100  8384481 0.48611111 0.49744898  0.49500000 0.49845679
## 28    HiC_scaffold_100  8384495 0.49586777 0.49744898  0.48000000 0.49836735
## 29    HiC_scaffold_100  9451470 0.30991736 0.32840237  0.52479339 0.39469388
## 30    HiC_scaffold_100 10464574 0.48347107 0.49744898  0.37500000 0.48530612
## 31    HiC_scaffold_100 11934792 0.49586777 0.41319444  0.48611111 0.47387755
## 32    HiC_scaffold_100 11980177 0.16528926 0.12444444  0.08677686 0.12600438
## 33    HiC_scaffold_100 18465760 0.40816327 0.42000000  0.45500000 0.42603550
## 34    HiC_scaffold_100 18465762 0.40816327 0.42000000  0.45500000 0.42603550
## 35    HiC_scaffold_100 18466205 0.50000000 0.35502959  0.63500000 0.52122449
## 36    HiC_scaffold_100 31738115 0.46875000 0.42603550  0.48000000 0.45918367
## 37    HiC_scaffold_100 44227362 0.43388430 0.47337278  0.29752066 0.42000000
## 38    HiC_scaffold_101 12808961 0.37500000 0.31065089  0.49652778 0.44122449
## 39    HiC_scaffold_101 13897149 0.32986111 0.46875000  0.35123967 0.39551020
## 40    HiC_scaffold_101 18337279 0.41319444 0.33673469  0.49382716 0.44122449
## 41    HiC_scaffold_101 20800167 0.27777778 0.31065089  0.20414201 0.26489796
## 42    HiC_scaffold_102  2260041 0.49500000 0.33673469  0.41319444 0.42438272
## 43    HiC_scaffold_102  8734519 0.48611111 0.50000000  0.49652778 0.49632653
## 44    HiC_scaffold_102 10233999 0.49704142 0.27777778  0.50000000 0.46693878
## 45    HiC_scaffold_102 11446042 0.44444444 0.46444444  0.46280992 0.45918367
## 46    HiC_scaffold_102 15918694 0.50000000 0.49704142  0.46875000 0.49836735
## 47    HiC_scaffold_102 15935667 0.48816568 0.35502959  0.39669421 0.46347699
## 48    HiC_scaffold_102 17442643 0.43622449 0.43388430  0.46280992 0.44444444
## 49    HiC_scaffold_102 17608969 0.37500000 0.48347107  0.37500000 0.42000000
## 50    HiC_scaffold_102 20180185 0.49500000 0.48816568  0.48816568 0.49035494
## 51    HiC_scaffold_102 24788723 0.44444444 0.45266272  0.37500000 0.43102041
## 52    HiC_scaffold_102 25423729 0.19753086 0.24489796  0.07986111 0.18000000
## 53    HiC_scaffold_102 39755142 0.48816568 0.43388430  0.39349112 0.47662527
## 54    HiC_scaffold_102 52046978 0.48347107 0.47704082  0.46875000 0.49853908
## 55   HiC_scaffold_1027    34152 0.48979592 0.47704082  0.49586777 0.50000000
## 56    HiC_scaffold_103   601715 0.35777778 0.44444444  0.48000000 0.48685172
## 57    HiC_scaffold_103  2891384 0.48611111 0.46875000  0.39669421 0.45918367
## 58    HiC_scaffold_103  8191270 0.35123967 0.41777778  0.61111111 0.48095568
## 59    HiC_scaffold_103  9521272 0.44444444 0.37500000  0.21875000 0.35265306
## 60    HiC_scaffold_103 14768909 0.46280992 0.49652778  0.50000000 0.49836735
## 61    HiC_scaffold_103 19312119 0.18000000 0.37500000  0.08677686 0.24489796
## 62    HiC_scaffold_103 21284866 0.42603550 0.42603550  0.48611111 0.45013850
## 63    HiC_scaffold_103 31428453 0.27777778 0.48611111  0.49586777 0.48979592
## 64    HiC_scaffold_103 42567396 0.49652778 0.50000000  0.43388430 0.49688366
## 65    HiC_scaffold_103 45921571 0.45500000 0.50000000  0.29752066 0.45918367
## 66    HiC_scaffold_103 45921573 0.39349112 0.50000000  0.29752066 0.44148199
## 67    HiC_scaffold_103 49592022 0.49704142 0.50000000  0.50000000 0.49959184
## 68    HiC_scaffold_103 49620132 0.49500000 0.48816568  0.48816568 0.49652778
## 69    HiC_scaffold_103 50440915 0.39349112 0.39349112  0.49586777 0.43827611
## 70    HiC_scaffold_103 51944137 0.37500000 0.26035503  0.49586777 0.40123457
## 71    HiC_scaffold_103 54308582 0.49744898 0.29336735  0.32000000 0.43213296
## 72    HiC_scaffold_103 54424067 0.29752066 0.49652778  0.44444444 0.45918367
## 73    HiC_scaffold_103 56932900 0.15277778 0.14201183  0.08677686 0.12924383
## 74    HiC_scaffold_103 57470264 0.00000000 0.14201183  0.45500000 0.22408163
## 75    HiC_scaffold_104  7771140 0.34567901 0.13265306  0.00000000 0.15277778
## 76    HiC_scaffold_104  9103028 0.50000000 0.48816568  0.48611111 0.49382716
## 77    HiC_scaffold_104 10633168 0.42603550 0.31065089  0.50000000 0.43479938
## 78    HiC_scaffold_104 18917031 0.49586777 0.50000000  0.50000000 0.49959184
## 79    HiC_scaffold_104 20851902 0.37500000 0.44444444  0.39349112 0.47662527
## 80    HiC_scaffold_104 24451803 0.46875000 0.44444444  0.44444444 0.45331790
## 81    HiC_scaffold_104 28597688 0.49704142 0.48347107  0.48816568 0.49086925
## 82    HiC_scaffold_104 40927999 0.49652778 0.33673469  0.44444444 0.49346939
## 83    HiC_scaffold_104 46490074 0.46875000 0.48816568  0.37500000 0.45918367
## 84    HiC_scaffold_104 49759053 0.35502959 0.48979592  0.35123967 0.42209141
## 85    HiC_scaffold_104 57267896 0.49586777 0.48816568  0.48347107 0.49959184
## 86    HiC_scaffold_104 62570010 0.48000000 0.42603550  0.41319444 0.44122449
## 87     HiC_scaffold_11 32804173 0.48611111 0.41319444  0.48347107 0.46693878
## 88     HiC_scaffold_11 34516508 0.00000000 0.16528926  0.25500000 0.13265306
## 89     HiC_scaffold_11 35332996 0.45266272 0.49586777  0.46280992 0.47387755
## 90     HiC_scaffold_11 35904027 0.37500000 0.43622449  0.35123967 0.39551020
## 91     HiC_scaffold_11 41539793 0.47337278 0.43622449  0.42968750 0.45061224
## 92     HiC_scaffold_11 41604080 0.15277778 0.13265306  0.00000000 0.10775510
## 93     HiC_scaffold_11 42855323 0.46875000 0.48611111  0.50000000 0.48979592
## 94     HiC_scaffold_11 45339409 0.45918367 0.41319444  0.42000000 0.43479938
## 95     HiC_scaffold_11 45339410 0.45918367 0.49652778  0.50000000 0.48979592
## 96     HiC_scaffold_11 47544035 0.32986111 0.42603550  0.48347107 0.42438272
## 97     HiC_scaffold_12  7515164 0.41319444 0.48611111  0.43388430 0.45061224
## 98     HiC_scaffold_12 12640100 0.48611111 0.45266272  0.35123967 0.44444444
## 99     HiC_scaffold_12 12826705 0.23553719 0.45266272  0.48611111 0.42438272
## 100    HiC_scaffold_12 14899285 0.29752066 0.48816568  0.50000000 0.46693878
## 101    HiC_scaffold_12 17465672 0.45918367 0.50000000  0.42000000 0.47530864
## 102    HiC_scaffold_12 22770710 0.32986111 0.47337278  0.49586777 0.46875000
## 103    HiC_scaffold_12 32318964 0.50000000 0.37500000  0.39669421 0.44122449
## 104    HiC_scaffold_12 35136373 0.41319444 0.40816327  0.44444444 0.42000000
## 105    HiC_scaffold_12 40687860 0.49652778 0.44444444  0.29752066 0.44122449
## 106    HiC_scaffold_13  2938168 0.42000000 0.27777778  0.15277778 0.28962747
## 107    HiC_scaffold_13 20350974 0.39669421 0.48979592  0.45500000 0.45918367
## 108    HiC_scaffold_13 27759554 0.50000000 0.48347107  0.48347107 0.49346939
## 109    HiC_scaffold_13 28146828 0.46875000 0.35123967  0.35069444 0.41469388
## 110    HiC_scaffold_13 28146830 0.34375000 0.35123967  0.35069444 0.35959184
## 111    HiC_scaffold_13 28925343 0.41777778 0.24380165  0.29012346 0.33959184
## 112    HiC_scaffold_13 31913129 0.29336735 0.48347107  0.43388430 0.48109568
## 113    HiC_scaffold_13 32078924 0.37500000 0.44444444  0.49500000 0.46141975
## 114    HiC_scaffold_13 33864805 0.10493827 0.31065089  0.26035503 0.24489796
## 115    HiC_scaffold_13 34892542 0.46875000 0.50000000  0.50000000 0.49632653
## 116    HiC_scaffold_13 34893103 0.46875000 0.49111111  0.49652778 0.49959184
## 117    HiC_scaffold_13 35762551 0.42000000 0.50000000  0.45266272 0.50000000
## 118    HiC_scaffold_13 35881745 0.07986111 0.37500000  0.27777778 0.25887346
## 119    HiC_scaffold_13 35881749 0.44444444 0.39669421  0.47337278 0.44444444
## 120    HiC_scaffold_14  3843214 0.35123967 0.49652778  0.45266272 0.45331790
## 121    HiC_scaffold_14 25884262 0.29166667 0.52295918  0.54938272 0.47673469
## 122    HiC_scaffold_14 27050415 0.15277778 0.18000000  0.00000000 0.13265306
## 123    HiC_scaffold_14 27118495 0.25500000 0.13265306  0.23553719 0.20244898
## 124    HiC_scaffold_14 27277222 0.23553719 0.47193878  0.53125000 0.44448503
## 125    HiC_scaffold_14 29215814 0.49586777 0.49744898  0.32000000 0.48530612
## 126    HiC_scaffold_15  2460398 0.44444444 0.48816568  0.45500000 0.46537396
## 127    HiC_scaffold_15  2462980 0.49652778 0.45918367  0.45500000 0.49845679
## 128    HiC_scaffold_15  2467289 0.16528926 0.24489796  0.16528926 0.19753086
## 129    HiC_scaffold_15  5669141 0.47530864 0.18000000  0.46875000 0.38850309
## 130    HiC_scaffold_15 13700694 0.14497041 0.35069444  0.15277778 0.22096421
## 131    HiC_scaffold_15 17825275 0.46875000 0.42603550  0.45500000 0.48979592
## 132    HiC_scaffold_15 19938475 0.39669421 0.50000000  0.49586777 0.48530612
## 133    HiC_scaffold_15 23865956 0.35502959 0.44444444  0.29752066 0.38132807
## 134    HiC_scaffold_15 28837774 0.49777778 0.49704142  0.47530864 0.49853908
## 135    HiC_scaffold_15 28837810 0.41319444 0.48000000  0.50000000 0.47662527
## 136    HiC_scaffold_15 28837823 0.45266272 0.49704142  0.39669421 0.47662527
## 137    HiC_scaffold_15 28837835 0.48611111 0.48979592  0.46280992 0.49671293
## 138    HiC_scaffold_15 28837841 0.48611111 0.37500000  0.49586777 0.46347699
## 139    HiC_scaffold_15 28837854 0.09500000 0.40816327  0.41319444 0.34567901
## 140    HiC_scaffold_15 34827832 0.46875000 0.37500000  0.39669421 0.42000000
## 141    HiC_scaffold_15 34893807 0.42603550 0.43388430  0.46875000 0.44444444
## 142    HiC_scaffold_15 35327348 0.44444444 0.49777778  0.48347107 0.48530612
## 143    HiC_scaffold_15 42161112 0.32000000 0.40816327  0.48347107 0.42000000
## 144    HiC_scaffold_15 42164926 0.32986111 0.45918367  0.39669421 0.47662527
## 145    HiC_scaffold_15 42164946 0.43388430 0.33673469  0.49500000 0.48979592
## 146    HiC_scaffold_15 46289572 0.21875000 0.46444444  0.47337278 0.43479938
## 147    HiC_scaffold_15 50591576 0.19753086 0.35502959  0.47337278 0.38204082
## 148    HiC_scaffold_15 50759128 0.50000000 0.42000000  0.48347107 0.47387755
## 149    HiC_scaffold_15 51188336 0.43388430 0.48979592  0.48000000 0.47387755
## 150    HiC_scaffold_15 54726640 0.19753086 0.24489796  0.32986111 0.26489796
## 151    HiC_scaffold_15 54788235 0.50000000 0.49777778  0.50000000 0.49959184
## 152    HiC_scaffold_15 56162375 0.39669421 0.48347107  0.42603550 0.49836735
## 153    HiC_scaffold_15 61091106 0.47337278 0.46875000  0.41319444 0.49086925
## 154    HiC_scaffold_15 61464359 0.14201183 0.08677686  0.16528926 0.13265306
## 155    HiC_scaffold_15 61510386 0.49586777 0.43622449  0.50000000 0.48530612
## 156    HiC_scaffold_15 62309788 0.49652778 0.31065089  0.42000000 0.43102041
## 157    HiC_scaffold_15 62309793 0.50000000 0.31065089  0.42000000 0.44122449
## 158    HiC_scaffold_15 62771254 0.29336735 0.50000000  0.39669421 0.43556870
## 159    HiC_scaffold_15 63493927 0.35123967 0.06887755  0.39669421 0.27777778
## 160    HiC_scaffold_15 64997502 0.49652778 0.40816327  0.44444444 0.45810249
## 161    HiC_scaffold_15 65007865 0.21875000 0.13265306  0.10493827 0.15673469
## 162    HiC_scaffold_15 65007879 0.47337278 0.44444444  0.48347107 0.46875000
## 163    HiC_scaffold_15 66038529 0.47337278 0.50000000  0.49586777 0.49853908
## 164    HiC_scaffold_15 69811281 0.29752066 0.21875000  0.21875000 0.24489796
## 165    HiC_scaffold_16 14205925 0.50000000 0.44444444  0.48000000 0.48530612
## 166    HiC_scaffold_16 30404047 0.37500000 0.45918367  0.39669421 0.42000000
## 167    HiC_scaffold_16 57413288 0.43388430 0.37500000  0.46875000 0.48000000
## 168    HiC_scaffold_16 63687578 0.49500000 0.37500000  0.37500000 0.42438272
## 169    HiC_scaffold_16 74138787 0.48611111 0.48816568  0.46280992 0.48109568
## 170    HiC_scaffold_16 74140106 0.41319444 0.46875000  0.46280992 0.45061224
## 171    HiC_scaffold_16 76276015 0.49704142 0.39669421  0.43388430 0.45918367
## 172    HiC_scaffold_17 11390873 0.49382716 0.50000000  0.47337278 0.49836735
## 173    HiC_scaffold_17 12551128 0.35502959 0.35123967  0.21875000 0.31327160
## 174    HiC_scaffold_17 16615612 0.37500000 0.48979592  0.35123967 0.43102041
## 175    HiC_scaffold_17 18838093 0.49744898 0.45500000  0.35123967 0.47387755
## 176    HiC_scaffold_17 22801072 0.48611111 0.37500000  0.50000000 0.49382716
## 177    HiC_scaffold_17 23788599 0.48347107 0.46444444  0.50000000 0.48753463
## 178    HiC_scaffold_17 29383895 0.45918367 0.43388430  0.46280992 0.45331790
## 179    HiC_scaffold_17 29618771 0.48816568 0.49744898  0.49500000 0.49853908
## 180    HiC_scaffold_17 29976139 0.47337278 0.49586777  0.48611111 0.48611111
## 181    HiC_scaffold_17 31107213 0.07986111 0.32986111  0.00000000 0.15673469
## 182    HiC_scaffold_17 32493792 0.48347107 0.41319444  0.44444444 0.45061224
## 183    HiC_scaffold_17 33732050 0.47704082 0.48816568  0.50000000 0.49961420
## 184    HiC_scaffold_17 33801314 0.48347107 0.50000000  0.49586777 0.49652778
## 185    HiC_scaffold_17 34081889 0.19132653 0.26035503  0.30468750 0.24489796
## 186    HiC_scaffold_18   227565 0.49744898 0.50000000  0.42603550 0.49445983
## 187    HiC_scaffold_18  1213486 0.42603550 0.35502959  0.32000000 0.37500000
## 188    HiC_scaffold_18  1701312 0.35069444 0.40051020  0.18000000 0.32870370
## 189    HiC_scaffold_18  3506437 0.27777778 0.39349112  0.45500000 0.38204082
## 190    HiC_scaffold_18  6304978 0.21875000 0.37500000  0.44444444 0.35265306
## 191    HiC_scaffold_18  6351493 0.23553719 0.18000000  0.35502959 0.26035503
## 192    HiC_scaffold_18  6358009 0.31065089 0.49652778  0.48347107 0.48109568
## 193    HiC_scaffold_18 10770701 0.48611111 0.29336735  0.48347107 0.43827611
## 194    HiC_scaffold_18 13342858 0.15277778 0.37500000  0.43388430 0.33893353
## 195    HiC_scaffold_18 20045832 0.14201183 0.16528926  0.29752066 0.20897959
## 196    HiC_scaffold_18 22682683 0.40816327 0.32986111  0.49500000 0.42438272
## 197    HiC_scaffold_18 26337790 0.48000000 0.39111111  0.50000000 0.46693878
## 198    HiC_scaffold_18 48929148 0.42603550 0.49652778  0.18000000 0.42000000
## 199    HiC_scaffold_18 51490626 0.49218750 0.49744898  0.45266272 0.49346939
## 200    HiC_scaffold_18 53723137 0.45266272 0.46280992  0.48347107 0.46693878
## 201    HiC_scaffold_18 54496637 0.44444444 0.37500000  0.49382716 0.44122449
## 202    HiC_scaffold_18 55294388 0.48816568 0.50000000  0.46280992 0.49959184
## 203    HiC_scaffold_19   279726 0.44444444 0.49744898  0.45500000 0.49845679
## 204    HiC_scaffold_19  6426572 0.44444444 0.49586777  0.48611111 0.49632653
## 205    HiC_scaffold_19  6575887 0.46875000 0.47337278  0.49586777 0.49035494
## 206    HiC_scaffold_19  7755254 0.45918367 0.44444444  0.46875000 0.45810249
## 207    HiC_scaffold_19  9301421 0.32986111 0.49744898  0.37500000 0.45331790
## 208    HiC_scaffold_19  9357388 0.48816568 0.49652778  0.32000000 0.46693878
## 209    HiC_scaffold_19  9778841 0.48611111 0.31065089  0.43388430 0.42438272
## 210    HiC_scaffold_19 10928976 0.49652778 0.48611111  0.49652778 0.49382716
## 211    HiC_scaffold_19 10928980 0.49652778 0.46875000  0.49652778 0.49035494
## 212    HiC_scaffold_19 10928982 0.50000000 0.50000000  0.49652778 0.49959184
## 213    HiC_scaffold_19 11106347 0.37500000 0.48347107  0.27777778 0.44122449
## 214    HiC_scaffold_19 11590139 0.48347107 0.49704142  0.46875000 0.50000000
## 215    HiC_scaffold_19 11665300 0.35123967 0.16528926  0.26035503 0.26489796
## 216    HiC_scaffold_19 14793640 0.37500000 0.48816568  0.45500000 0.45061224
## 217    HiC_scaffold_19 22112743 0.45918367 0.46875000  0.44444444 0.45918367
## 218    HiC_scaffold_19 25473671 0.35123967 0.06887755  0.27777778 0.23374726
## 219    HiC_scaffold_19 25473692 0.37500000 0.49744898  0.49652778 0.49445983
## 220    HiC_scaffold_19 28110829 0.49586777 0.45918367  0.49586777 0.49382716
## 221    HiC_scaffold_19 28465002 0.41319444 0.44444444  0.42968750 0.43102041
## 222    HiC_scaffold_19 28465167 0.49586777 0.48816568  0.35502959 0.47662527
## 223    HiC_scaffold_19 30106869 0.46280992 0.48979592  0.37500000 0.50000000
## 224    HiC_scaffold_19 52538858 0.00000000 0.24489796  0.19753086 0.15277778
## 225    HiC_scaffold_19 52596196 0.33673469 0.43622449  0.50000000 0.44148199
## 226    HiC_scaffold_19 53482993 0.47337278 0.45266272  0.37500000 0.44148199
## 227    HiC_scaffold_19 54312637 0.07396450 0.29752066  0.32986111 0.23919753
## 228    HiC_scaffold_19 59345841 0.46280992 0.48000000  0.49500000 0.49961420
## 229     HiC_scaffold_2  3296144 0.00000000 0.16528926  0.14201183 0.10226443
## 230     HiC_scaffold_2  3418589 0.50000000 0.48816568  0.48611111 0.50000000
## 231     HiC_scaffold_2  3864060 0.47337278 0.35502959  0.42000000 0.42438272
## 232     HiC_scaffold_2  4104755 0.18000000 0.43877551  0.36776860 0.35959184
## 233     HiC_scaffold_2  4104758 0.18000000 0.39030612  0.30991736 0.31959184
## 234     HiC_scaffold_2  8316721 0.48347107 0.37500000  0.46280992 0.44444444
## 235     HiC_scaffold_2  9098999 0.49500000 0.47704082  0.50000000 0.49346939
## 236     HiC_scaffold_2 10457537 0.46280992 0.37500000  0.42603550 0.42438272
## 237     HiC_scaffold_2 19048125 0.45500000 0.50000000  0.45266272 0.48210373
## 238     HiC_scaffold_2 21748201 0.21875000 0.26035503  0.00000000 0.17129291
## 239     HiC_scaffold_2 33187764 0.35123967 0.44444444  0.48000000 0.43479938
## 240     HiC_scaffold_2 33187770 0.35123967 0.44444444  0.48347107 0.43827611
## 241     HiC_scaffold_2 33187959 0.48000000 0.44444444  0.49500000 0.48530612
## 242     HiC_scaffold_2 41603929 0.48347107 0.49744898  0.49652778 0.49853908
## 243     HiC_scaffold_2 52233191 0.50000000 0.43622449  0.32000000 0.45580716
## 244     HiC_scaffold_2 52400748 0.44444444 0.27777778  0.35123967 0.35265306
## 245     HiC_scaffold_2 52403793 0.37500000 0.12444444  0.25500000 0.24489796
## 246     HiC_scaffold_2 52799130 0.37500000 0.35502959  0.32986111 0.35390796
## 247    HiC_scaffold_20 10332897 0.44444444 0.45918367  0.32986111 0.42000000
## 248    HiC_scaffold_20 17198418 0.48816568 0.49704142  0.40123457 0.49959184
## 249    HiC_scaffold_20 17915398 0.40816327 0.50000000  0.48347107 0.47387755
## 250    HiC_scaffold_20 18872955 0.39669421 0.44444444  0.47530864 0.44122449
## 251    HiC_scaffold_20 19055301 0.00000000 0.14201183  0.37500000 0.19284149
## 252    HiC_scaffold_20 19150094 0.31065089 0.41319444  0.48347107 0.41319444
## 253    HiC_scaffold_20 20651022 0.47704082 0.49652778  0.49500000 0.49652778
## 254    HiC_scaffold_20 22651296 0.48347107 0.37500000  0.49652778 0.48000000
## 255    HiC_scaffold_21  2009156 0.47337278 0.48816568  0.44444444 0.49836735
## 256    HiC_scaffold_21  2435648 0.47530864 0.44444444  0.37500000 0.43479938
## 257    HiC_scaffold_21  7164210 0.47530864 0.44444444  0.39669421 0.44122449
## 258    HiC_scaffold_21  9786512 0.47337278 0.46875000  0.46280992 0.46875000
## 259    HiC_scaffold_21 12424922 0.15277778 0.06887755  0.07986111 0.09972299
## 260    HiC_scaffold_21 17966833 0.29752066 0.07986111  0.00000000 0.13265306
## 261    HiC_scaffold_21 19025429 0.48000000 0.50000000  0.35502959 0.49035494
## 262    HiC_scaffold_21 20058318 0.45266272 0.43388430  0.43388430 0.44122449
## 263    HiC_scaffold_21 20562855 0.39349112 0.31065089  0.50000000 0.42000000
## 264    HiC_scaffold_21 20661860 0.16528926 0.49586777  0.39349112 0.42000000
## 265    HiC_scaffold_21 20895395 0.14201183 0.48347107  0.50000000 0.43479938
## 266    HiC_scaffold_21 21158811 0.65561224 0.50000000  0.46000000 0.58552632
## 267    HiC_scaffold_21 22250857 0.49704142 0.47704082  0.37500000 0.46712689
## 268    HiC_scaffold_21 22250866 0.42603550 0.48816568  0.41319444 0.45013850
## 269    HiC_scaffold_21 22257737 0.42000000 0.29336735  0.35123967 0.35265306
## 270    HiC_scaffold_21 22644667 0.48816568 0.49704142  0.46875000 0.48753463
## 271    HiC_scaffold_21 22644673 0.48816568 0.49704142  0.46875000 0.48753463
## 272    HiC_scaffold_21 22666888 0.43388430 0.46875000  0.44444444 0.49632653
## 273    HiC_scaffold_21 23905416 0.37500000 0.50000000  0.37500000 0.45061224
## 274    HiC_scaffold_21 23981651 0.35123967 0.47337278  0.49586777 0.45918367
## 275    HiC_scaffold_21 24287068 0.35123967 0.48979592  0.43388430 0.44444444
## 276    HiC_scaffold_21 30798434 0.50000000 0.49777778  0.44444444 0.49382716
## 277    HiC_scaffold_21 35006232 0.34567901 0.26035503  0.47337278 0.38204082
## 278    HiC_scaffold_21 35779294 0.46875000 0.49777778  0.37500000 0.47896121
## 279    HiC_scaffold_22   124910 0.50000000 0.35502959  0.49586777 0.48611111
## 280    HiC_scaffold_22   751023 0.39349112 0.31065089  0.48000000 0.40123457
## 281    HiC_scaffold_22  1042644 0.35123967 0.48816568  0.48611111 0.46141975
## 282    HiC_scaffold_22  1044708 0.48979592 0.49652778  0.32000000 0.46875000
## 283    HiC_scaffold_22  2174911 0.44444444 0.45266272  0.37500000 0.49853908
## 284    HiC_scaffold_22  3431122 0.42603550 0.26035503  0.48347107 0.44740687
## 285    HiC_scaffold_22  3446787 0.49704142 0.49777778  0.49704142 0.49732302
## 286    HiC_scaffold_22  3451756 0.41319444 0.43388430  0.44444444 0.43102041
## 287    HiC_scaffold_22  3720435 0.50000000 0.45918367  0.27777778 0.44444444
## 288    HiC_scaffold_22  4065466 0.45918367 0.35123967  0.45500000 0.43102041
## 289    HiC_scaffold_22  4739889 0.31065089 0.45867769  0.32986111 0.38618827
## 290    HiC_scaffold_22  4918263 0.45500000 0.45918367  0.42603550 0.49415632
## 291    HiC_scaffold_22  5750008 0.20414201 0.13265306  0.27777778 0.19753086
## 292    HiC_scaffold_22  5769942 0.42603550 0.46875000  0.42000000 0.44122449
## 293    HiC_scaffold_22 28264522 0.45266272 0.35123967  0.32986111 0.49035494
## 294    HiC_scaffold_22 28265115 0.46280992 0.49652778  0.50000000 0.49836735
## 295    HiC_scaffold_22 29205851 0.36776860 0.35069444  0.07986111 0.27632653
## 296    HiC_scaffold_22 29822340 0.35123967 0.39111111  0.18000000 0.32986111
## 297    HiC_scaffold_22 30797357 0.50000000 0.49777778  0.50000000 0.49959184
## 298    HiC_scaffold_22 32042610 0.16528926 0.32000000  0.08677686 0.21365961
## 299    HiC_scaffold_23 11215327 0.37500000 0.47337278  0.46875000 0.44740687
## 300    HiC_scaffold_23 27081333 0.45266272 0.49704142  0.46875000 0.48753463
## 301    HiC_scaffold_23 28672255 0.44444444 0.50000000  0.35502959 0.45580716
## 302    HiC_scaffold_23 29218828 0.49586777 0.47337278  0.46875000 0.49961420
## 303    HiC_scaffold_23 32528768 0.40816327 0.47704082  0.39669421 0.47896121
## 304    HiC_scaffold_23 32669383 0.47337278 0.49652778  0.37500000 0.48000000
## 305    HiC_scaffold_23 33199663 0.35502959 0.45918367  0.45266272 0.42968750
## 306    HiC_scaffold_23 33245843 0.43388430 0.49586777  0.42603550 0.49836735
## 307    HiC_scaffold_23 40824545 0.50000000 0.50000000  0.48611111 0.49836735
## 308    HiC_scaffold_23 41504669 0.46280992 0.49111111  0.46875000 0.47783934
## 309    HiC_scaffold_24 16622654 0.35502959 0.45266272  0.48000000 0.43479938
## 310    HiC_scaffold_24 16622681 0.35502959 0.47337278  0.46875000 0.44148199
## 311    HiC_scaffold_24 19851560 0.27777778 0.27777778  0.46280992 0.35265306
## 312    HiC_scaffold_24 20590563 0.49652778 0.42603550  0.29752066 0.45331790
## 313    HiC_scaffold_24 27745754 0.49500000 0.50000000  0.49586777 0.49836735
## 314    HiC_scaffold_24 28763699 0.29752066 0.32000000  0.18000000 0.27777778
## 315    HiC_scaffold_24 28763703 0.23553719 0.23111111  0.10493827 0.20244898
## 316    HiC_scaffold_25  4135969 0.48347107 0.42000000  0.35123967 0.42841490
## 317    HiC_scaffold_25  4201677 0.48611111 0.49652778  0.29752066 0.45918367
## 318    HiC_scaffold_25  5872831 0.37500000 0.48611111  0.50000000 0.46875000
## 319    HiC_scaffold_25  6879627 0.47337278 0.50000000  0.43388430 0.48000000
## 320    HiC_scaffold_25  8172813 0.48816568 0.14201183  0.35123967 0.36815194
## 321    HiC_scaffold_25  9969507 0.43388430 0.49744898  0.50000000 0.49035494
## 322    HiC_scaffold_25 10691336 0.50000000 0.49744898  0.37500000 0.48530612
## 323    HiC_scaffold_25 21286462 0.50000000 0.48979592  0.48347107 0.50000000
## 324    HiC_scaffold_26  4086662 0.45500000 0.45266272  0.41319444 0.44122449
## 325    HiC_scaffold_26  7539671 0.46280992 0.50000000  0.46875000 0.48611111
## 326    HiC_scaffold_26  8348511 0.39349112 0.50000000  0.19753086 0.43102041
## 327    HiC_scaffold_26  9043748 0.44444444 0.46875000  0.43388430 0.45061224
## 328    HiC_scaffold_26  9045655 0.49652778 0.46280992  0.48611111 0.49346939
## 329    HiC_scaffold_26 11253181 0.49704142 0.29336735  0.50000000 0.46712689
## 330    HiC_scaffold_26 17828344 0.09500000 0.29336735  0.16528926 0.20244898
## 331    HiC_scaffold_26 17932520 0.13265306 0.32986111  0.00000000 0.17554012
## 332    HiC_scaffold_26 17941459 0.40816327 0.37500000  0.48611111 0.43213296
## 333    HiC_scaffold_26 17960877 0.07396450 0.26035503  0.08677686 0.14901388
## 334    HiC_scaffold_26 18284041 0.46280992 0.40816327  0.37500000 0.42000000
## 335    HiC_scaffold_26 18288701 0.07986111 0.08677686  0.37500000 0.20244898
## 336    HiC_scaffold_26 18294422 0.48816568 0.49652778  0.48347107 0.49652778
## 337    HiC_scaffold_26 21307365 0.46875000 0.45918367  0.46280992 0.46347699
## 338    HiC_scaffold_26 22159924 0.32986111 0.31065089  0.08677686 0.25887346
## 339    HiC_scaffold_26 22161535 0.40277778 0.46875000  0.55785124 0.48938776
## 340    HiC_scaffold_26 24794176 0.48611111 0.26035503  0.32986111 0.38166545
## 341    HiC_scaffold_26 28538113 0.41319444 0.39349112  0.49500000 0.45918367
## 342    HiC_scaffold_26 29031357 0.14201183 0.00000000  0.18000000 0.10226443
## 343    HiC_scaffold_26 29163462 0.48000000 0.40816327  0.39669421 0.43102041
## 344    HiC_scaffold_26 42631018 0.46875000 0.49744898  0.49500000 0.49035494
## 345    HiC_scaffold_26 42634814 0.44444444 0.45266272  0.37500000 0.43102041
## 346    HiC_scaffold_26 43483190 0.39349112 0.32986111  0.50000000 0.43102041
## 347    HiC_scaffold_26 49955889 0.41319444 0.47337278  0.43388430 0.44444444
## 348    HiC_scaffold_26 58342510 0.41319444 0.31065089  0.50000000 0.49632653
## 349    HiC_scaffold_27  1496120 0.50000000 0.37500000  0.49652778 0.47530864
## 350    HiC_scaffold_27  1947057 0.49704142 0.33673469  0.43388430 0.44148199
## 351    HiC_scaffold_27  2359058 0.40123457 0.47704082  0.49652778 0.47387755
## 352    HiC_scaffold_27  2699645 0.32000000 0.47704082  0.49586777 0.47387755
## 353    HiC_scaffold_27  4425475 0.48347107 0.45918367  0.39669421 0.48109568
## 354    HiC_scaffold_27  7539469 0.40051020 0.55500000  0.48347107 0.48938776
## 355    HiC_scaffold_27  7777122 0.35123967 0.49744898  0.35123967 0.43479938
## 356    HiC_scaffold_27 16657070 0.48816568 0.48979592  0.49586777 0.49134349
## 357    HiC_scaffold_27 24539255 0.50000000 0.49652778  0.49218750 0.49836735
## 358    HiC_scaffold_27 34642359 0.49586777 0.33673469  0.29752066 0.42438272
## 359    HiC_scaffold_27 34647277 0.35714286 0.33777778  0.27777778 0.33313504
## 360    HiC_scaffold_27 35380535 0.23553719 0.13265306  0.09500000 0.15673469
## 361    HiC_scaffold_27 35383230 0.44444444 0.32986111  0.46280992 0.47387755
## 362    HiC_scaffold_28 21261390 0.42603550 0.39349112  0.45500000 0.47530864
## 363    HiC_scaffold_28 24490442 0.46875000 0.43622449  0.49500000 0.46875000
## 364    HiC_scaffold_28 25601927 0.47704082 0.39349112  0.49382716 0.47530864
## 365    HiC_scaffold_28 31793968 0.58641975 0.35777778  0.54132231 0.49346939
## 366    HiC_scaffold_28 32126687 0.24380165 0.49777778  0.18000000 0.34915123
## 367    HiC_scaffold_28 34779518 0.48611111 0.37500000  0.35502959 0.41782323
## 368    HiC_scaffold_28 36042491 0.49652778 0.48000000  0.44444444 0.47896121
## 369    HiC_scaffold_28 36692361 0.35502959 0.40816327  0.49218750 0.42000000
## 370    HiC_scaffold_28 38672993 0.43622449 0.48816568  0.48000000 0.47041636
## 371    HiC_scaffold_28 39640526 0.25500000 0.47337278  0.50000000 0.49346939
## 372    HiC_scaffold_28 40169242 0.49744898 0.47704082  0.50000000 0.49853908
## 373    HiC_scaffold_28 41059640 0.14201183 0.13265306  0.00000000 0.10493827
## 374    HiC_scaffold_28 42514830 0.48611111 0.43622449  0.39669421 0.44740687
## 375    HiC_scaffold_28 42601570 0.46280992 0.37500000  0.49586777 0.45331790
## 376    HiC_scaffold_28 42601585 0.48347107 0.47337278  0.31065089 0.43827611
## 377    HiC_scaffold_28 43018803 0.49500000 0.46875000  0.47337278 0.48979592
## 378    HiC_scaffold_28 43036165 0.48000000 0.49704142  0.39349112 0.46875000
## 379    HiC_scaffold_29   344317 0.45500000 0.48000000  0.50000000 0.48611111
## 380    HiC_scaffold_29  3811176 0.48611111 0.47337278  0.35123967 0.48109568
## 381    HiC_scaffold_29  6073993 0.49500000 0.47337278  0.49652778 0.48979592
## 382    HiC_scaffold_29  6415222 0.35502959 0.13265306  0.24380165 0.25727147
## 383    HiC_scaffold_29  8224424 0.31065089 0.50000000  0.46280992 0.45061224
## 384    HiC_scaffold_29 11153624 0.47704082 0.49652778  0.45500000 0.49035494
## 385    HiC_scaffold_29 11153712 0.48347107 0.47337278  0.48611111 0.48109568
## 386    HiC_scaffold_29 11167966 0.48000000 0.49704142  0.42000000 0.49861496
## 387    HiC_scaffold_29 11491468 0.41319444 0.45266272  0.37500000 0.42000000
## 388    HiC_scaffold_29 12103558 0.49652778 0.48347107  0.49652778 0.50000000
## 389    HiC_scaffold_29 14279322 0.45500000 0.39111111  0.46875000 0.43827611
## 390    HiC_scaffold_29 14913907 0.48347107 0.45918367  0.37500000 0.45061224
## 391    HiC_scaffold_29 16378276 0.15277778 0.16528926  0.15277778 0.15673469
## 392    HiC_scaffold_29 20635937 0.48347107 0.44444444  0.48816568 0.47530864
## 393    HiC_scaffold_29 20636787 0.29752066 0.47337278  0.49652778 0.45331790
## 394    HiC_scaffold_29 22560215 0.46280992 0.45918367  0.32000000 0.43102041
## 395    HiC_scaffold_29 22561144 0.16528926 0.47337278  0.39669421 0.38204082
## 396    HiC_scaffold_29 24017849 0.27777778 0.29166667  0.48611111 0.36419753
## 397    HiC_scaffold_29 31603590 0.21875000 0.47704082  0.49500000 0.43479938
## 398     HiC_scaffold_3 21670751 0.48000000 0.49704142  0.27777778 0.48000000
## 399     HiC_scaffold_3 24747014 0.45500000 0.43622449  0.49704142 0.47041636
## 400     HiC_scaffold_3 27861792 0.39349112 0.41319444  0.48816568 0.44148199
## 401     HiC_scaffold_3 28057869 0.49586777 0.47337278  0.48347107 0.49836735
## 402     HiC_scaffold_3 28441436 0.49500000 0.48979592  0.50000000 0.49632653
## 403     HiC_scaffold_3 28694380 0.46280992 0.49704142  0.46280992 0.48000000
## 404     HiC_scaffold_3 31361023 0.48816568 0.49777778  0.50000000 0.49671293
## 405     HiC_scaffold_3 31960572 0.48000000 0.49744898  0.44444444 0.49035494
## 406     HiC_scaffold_3 32157169 0.44444444 0.41319444  0.50000000 0.47041636
## 407     HiC_scaffold_3 32159152 0.49652778 0.49744898  0.40123457 0.49836735
## 408     HiC_scaffold_3 34124237 0.00000000 0.49111111  0.48347107 0.43102041
## 409    HiC_scaffold_30 14199802 0.49586777 0.49704142  0.48347107 0.49836735
## 410    HiC_scaffold_30 16052331 0.37500000 0.39349112  0.29752066 0.36072531
## 411    HiC_scaffold_30 19914075 0.27777778 0.32986111  0.27777778 0.29591049
## 412    HiC_scaffold_30 20688783 0.48611111 0.49704142  0.48347107 0.49035494
## 413    HiC_scaffold_30 21446076 0.29166667 0.33777778  0.00000000 0.23142669
## 414    HiC_scaffold_30 21598563 0.42603550 0.42000000  0.41319444 0.42000000
## 415    HiC_scaffold_30 22155728 0.29752066 0.48816568  0.46280992 0.44122449
## 416    HiC_scaffold_31   687411 0.49652778 0.37500000  0.40123457 0.44122449
## 417    HiC_scaffold_31  3224722 0.37500000 0.47704082  0.42000000 0.43479938
## 418    HiC_scaffold_31  3574854 0.42603550 0.39349112  0.44444444 0.42000000
## 419    HiC_scaffold_31  5899551 0.15277778 0.27777778  0.16528926 0.20244898
## 420    HiC_scaffold_31  5911491 0.49500000 0.42603550  0.41319444 0.45061224
## 421    HiC_scaffold_31  6297680 0.49704142 0.45918367  0.47530864 0.48109568
## 422    HiC_scaffold_31 12394016 0.47337278 0.46875000  0.49500000 0.49959184
## 423    HiC_scaffold_31 12394040 0.49652778 0.31065089  0.43388430 0.43479938
## 424    HiC_scaffold_31 18612650 0.48347107 0.49704142  0.44444444 0.49652778
## 425    HiC_scaffold_32  4446859 0.49704142 0.49652778  0.42000000 0.49346939
## 426    HiC_scaffold_32  5274796 0.27777778 0.49704142  0.43388430 0.43479938
## 427    HiC_scaffold_32  5275108 0.44444444 0.49777778  0.46875000 0.49961420
## 428    HiC_scaffold_32  5282358 0.49500000 0.49704142  0.27777778 0.47387755
## 429    HiC_scaffold_32  5450203 0.47530864 0.19132653  0.37500000 0.35265306
## 430    HiC_scaffold_32 44200178 0.49218750 0.40816327  0.48816568 0.49632653
## 431    HiC_scaffold_33   638523 0.50000000 0.42000000  0.48347107 0.47387755
## 432    HiC_scaffold_33 44489563 0.44444444 0.43622449  0.46875000 0.45061224
## 433    HiC_scaffold_33 44489988 0.50000000 0.49652778  0.42603550 0.48530612
## 434    HiC_scaffold_33 47080180 0.44444444 0.42000000  0.46875000 0.44444444
## 435    HiC_scaffold_33 47495907 0.32986111 0.49704142  0.48000000 0.47387755
## 436    HiC_scaffold_33 51865876 0.27777778 0.37500000  0.50000000 0.42000000
## 437    HiC_scaffold_34  1096982 0.42000000 0.44444444  0.45266272 0.44148199
## 438    HiC_scaffold_34  6091943 0.27777778 0.48979592  0.34567901 0.39993075
## 439    HiC_scaffold_34  6100160 0.48816568 0.49586777  0.29752066 0.45918367
## 440    HiC_scaffold_34 24368584 0.14201183 0.49586777  0.50000000 0.46347699
## 441    HiC_scaffold_35  3233120 0.45266272 0.50000000  0.49652778 0.49652778
## 442    HiC_scaffold_35  3253574 0.44444444 0.46875000  0.46875000 0.49382716
## 443    HiC_scaffold_35  5512296 0.44444444 0.44444444  0.41319444 0.43479938
## 444    HiC_scaffold_35 15114788 0.43388430 0.39349112  0.48347107 0.44122449
## 445    HiC_scaffold_35 21214090 0.47704082 0.41319444  0.35502959 0.42603550
## 446    HiC_scaffold_35 21462564 0.42603550 0.46280992  0.35123967 0.42000000
## 447    HiC_scaffold_35 22746783 0.48611111 0.39111111  0.47530864 0.48109568
## 448    HiC_scaffold_35 22747085 0.50000000 0.48816568  0.44444444 0.48979592
## 449    HiC_scaffold_35 23059580 0.46280992 0.48816568  0.46875000 0.47530864
## 450    HiC_scaffold_35 23158882 0.46875000 0.31065089  0.48347107 0.48109568
## 451    HiC_scaffold_35 23261143 0.00000000 0.19132653  0.23553719 0.15673469
## 452    HiC_scaffold_35 24403602 0.48816568 0.48611111  0.43388430 0.47530864
## 453    HiC_scaffold_35 24403620 0.48816568 0.45266272  0.34567901 0.45061224
## 454    HiC_scaffold_35 24993986 0.45500000 0.42000000  0.25500000 0.39551020
## 455    HiC_scaffold_35 24993998 0.47530864 0.49744898  0.50000000 0.49959184
## 456    HiC_scaffold_36  1538038 0.49652778 0.45266272  0.48000000 0.48979592
## 457    HiC_scaffold_36  2464728 0.31065089 0.44444444  0.49652778 0.43827611
## 458    HiC_scaffold_36  5489050 0.37500000 0.48979592  0.41319444 0.44148199
## 459    HiC_scaffold_36  9673981 0.46444444 0.40816327  0.49382716 0.45810249
## 460    HiC_scaffold_36  9674127 0.29752066 0.13265306  0.26035503 0.22853186
## 461    HiC_scaffold_36  9674756 0.00000000 0.18000000  0.27777778 0.18000000
## 462    HiC_scaffold_36  9676329 0.21875000 0.13265306  0.08677686 0.14901388
## 463    HiC_scaffold_36 12304516 0.49586777 0.26035503  0.48611111 0.47530864
## 464    HiC_scaffold_36 12515555 0.49652778 0.49704142  0.48611111 0.50000000
## 465    HiC_scaffold_36 13092647 0.50000000 0.23553719  0.49586777 0.48000000
## 466    HiC_scaffold_36 13766994 0.35502959 0.42000000  0.48611111 0.43102041
## 467    HiC_scaffold_36 14567741 0.44444444 0.35502959  0.43388430 0.41319444
## 468    HiC_scaffold_36 15530578 0.09500000 0.19132653  0.00000000 0.10775510
## 469    HiC_scaffold_37   679894 0.27777778 0.20414201  0.18000000 0.22408163
## 470    HiC_scaffold_37   916693 0.48816568 0.35123967  0.48347107 0.45918367
## 471    HiC_scaffold_37   928146 0.49500000 0.47704082  0.48347107 0.49346939
## 472    HiC_scaffold_37  1256768 0.45266272 0.46875000  0.25500000 0.42000000
## 473    HiC_scaffold_37  1270034 0.49586777 0.29336735  0.37500000 0.40816327
## 474    HiC_scaffold_37  1770997 0.09500000 0.40051020  0.15277778 0.24884259
## 475    HiC_scaffold_37  1798298 0.48611111 0.37500000  0.50000000 0.49346939
## 476    HiC_scaffold_37  2010342 0.46280992 0.45266272  0.49652778 0.49845679
## 477    HiC_scaffold_37  2141526 0.35123967 0.47704082  0.37500000 0.42000000
## 478    HiC_scaffold_37  3952190 0.42603550 0.42603550  0.44444444 0.43213296
## 479    HiC_scaffold_37  3952215 0.42603550 0.43388430  0.41319444 0.42438272
## 480    HiC_scaffold_37  9915037 0.46280992 0.47337278  0.27777778 0.42438272
## 481    HiC_scaffold_38  5383430 0.45918367 0.45266272  0.32000000 0.42841490
## 482    HiC_scaffold_38  5668363 0.44444444 0.44444444  0.46280992 0.45061224
## 483    HiC_scaffold_38  5879849 0.44444444 0.44444444  0.41319444 0.43479938
## 484    HiC_scaffold_38  5880155 0.46875000 0.49704142  0.46280992 0.48109568
## 485    HiC_scaffold_38 10612790 0.49704142 0.42603550  0.49586777 0.48210373
## 486    HiC_scaffold_38 11940240 0.63223140 0.59777778  0.62809917 0.62198685
## 487    HiC_scaffold_38 12878826 0.44444444 0.42603550  0.48000000 0.45061224
## 488    HiC_scaffold_38 12959698 0.46280992 0.48816568  0.46875000 0.49382716
## 489    HiC_scaffold_38 13087368 0.27777778 0.00000000  0.34567901 0.20244898
## 490    HiC_scaffold_38 13480648 0.49586777 0.48816568  0.48347107 0.49959184
## 491    HiC_scaffold_38 13965243 0.35123967 0.00000000  0.07986111 0.15277778
## 492    HiC_scaffold_38 14089955 0.49652778 0.49744898  0.32000000 0.47530864
## 493    HiC_scaffold_38 14408072 0.39349112 0.50000000  0.46280992 0.46693878
## 494    HiC_scaffold_38 14931216 0.43622449 0.50000000  0.48611111 0.48303324
## 495    HiC_scaffold_38 14978356 0.27777778 0.49704142  0.50000000 0.47041636
## 496    HiC_scaffold_38 14978367 0.23553719 0.49704142  0.50000000 0.46875000
## 497    HiC_scaffold_38 15292863 0.29752066 0.27777778  0.40123457 0.43102041
## 498    HiC_scaffold_38 15306135 0.42000000 0.46444444  0.48816568 0.48753463
## 499    HiC_scaffold_38 16077506 0.48816568 0.45266272  0.50000000 0.49836735
## 500    HiC_scaffold_38 16138965 0.44444444 0.42603550  0.29752066 0.40123457
## 501    HiC_scaffold_38 16226040 0.32986111 0.45266272  0.29752066 0.37500000
## 502    HiC_scaffold_39  1393769 0.42603550 0.40816327  0.46280992 0.43213296
## 503    HiC_scaffold_39  2014970 0.45500000 0.49744898  0.27777778 0.44444444
## 504    HiC_scaffold_39  2014982 0.43388430 0.50000000  0.27777778 0.44740687
## 505    HiC_scaffold_39  2014985 0.43388430 0.50000000  0.27777778 0.45013850
## 506    HiC_scaffold_39  2426443 0.42603550 0.45266272  0.40123457 0.43102041
## 507    HiC_scaffold_39  2485330 0.47337278 0.42603550  0.49586777 0.48210373
## 508    HiC_scaffold_39  3350506 0.44444444 0.45266272  0.39669421 0.49035494
## 509    HiC_scaffold_39  5897388 0.32000000 0.42603550  0.46875000 0.42000000
## 510    HiC_scaffold_39 17631133 0.49382716 0.49777778  0.23553719 0.45918367
## 511     HiC_scaffold_4 12107187 0.37500000 0.50000000  0.46280992 0.45918367
## 512     HiC_scaffold_4 18241670 0.20414201 0.35502959  0.23553719 0.27173119
## 513     HiC_scaffold_4 18241723 0.20414201 0.14201183  0.16528926 0.17129291
## 514     HiC_scaffold_4 22418566 0.37500000 0.50000000  0.49652778 0.49086925
## 515     HiC_scaffold_4 27899990 0.39669421 0.43622449  0.49500000 0.45061224
## 516     HiC_scaffold_4 35575118 0.34567901 0.49777778  0.37500000 0.44444444
## 517     HiC_scaffold_4 38000967 0.00000000 0.26035503  0.27777778 0.18836565
## 518     HiC_scaffold_4 50654021 0.50000000 0.35502959  0.47530864 0.46693878
## 519    HiC_scaffold_40  2243415 0.37500000 0.48816568  0.49500000 0.48000000
## 520    HiC_scaffold_40  3000572 0.46875000 0.48000000  0.29752066 0.44148199
## 521    HiC_scaffold_40  3014177 0.29752066 0.13265306  0.25500000 0.22408163
## 522    HiC_scaffold_40  3027900 0.40816327 0.48347107  0.46280992 0.45331790
## 523    HiC_scaffold_40  3143834 0.39349112 0.42603550  0.46875000 0.43213296
## 524    HiC_scaffold_40  3843942 0.50255102 0.48724490  0.40123457 0.48392988
## 525    HiC_scaffold_40  3847620 0.37500000 0.48611111  0.39669421 0.43102041
## 526    HiC_scaffold_40  3891007 0.48979592 0.32986111  0.50000000 0.49035494
## 527    HiC_scaffold_40  3920667 0.46000000 0.47337278  0.15277778 0.41142857
## 528    HiC_scaffold_40  4177963 0.39669421 0.39349112  0.48816568 0.43827611
## 529    HiC_scaffold_40  4819107 0.48000000 0.49744898  0.43388430 0.49632653
## 530    HiC_scaffold_40  4819834 0.37500000 0.43622449  0.49586777 0.49959184
## 531    HiC_scaffold_40  5788271 0.46875000 0.49652778  0.49586777 0.48979592
## 532    HiC_scaffold_40  5965269 0.50000000 0.49777778  0.32986111 0.47530864
## 533    HiC_scaffold_40  6204154 0.45266272 0.49652778  0.39669421 0.47530864
## 534    HiC_scaffold_40  8387917 0.50000000 0.49744898  0.49586777 0.50000000
## 535    HiC_scaffold_41  3235384 0.37869822 0.26035503  0.08677686 0.26406136
## 536    HiC_scaffold_41  3583000 0.45500000 0.24489796  0.29752066 0.42000000
## 537    HiC_scaffold_41  5334504 0.26035503 0.07986111  0.15277778 0.17129291
## 538    HiC_scaffold_41  5387631 0.48611111 0.43622449  0.50000000 0.49632653
## 539    HiC_scaffold_41  6423426 0.50000000 0.41319444  0.46280992 0.47387755
## 540    HiC_scaffold_41 14359947 0.47337278 0.42000000  0.41319444 0.44122449
## 541    HiC_scaffold_41 24007593 0.42000000 0.43622449  0.46875000 0.44444444
## 542    HiC_scaffold_41 26225447 0.44444444 0.48816568  0.48000000 0.47387755
## 543    HiC_scaffold_41 28626484 0.18000000 0.45918367  0.46280992 0.40816327
## 544    HiC_scaffold_41 28660620 0.35123967 0.49744898  0.46280992 0.46141975
## 545    HiC_scaffold_41 31007688 0.37500000 0.47337278  0.42000000 0.48979592
## 546    HiC_scaffold_42  1131084 0.41319444 0.49652778  0.48611111 0.49845679
## 547    HiC_scaffold_42  1818523 0.49586777 0.29336735  0.42000000 0.42000000
## 548    HiC_scaffold_42  2165002 0.45486111 0.07396450  0.23553719 0.26967593
## 549    HiC_scaffold_42  2711332 0.48347107 0.39349112  0.43388430 0.44122449
## 550    HiC_scaffold_42  6142699 0.48347107 0.47337278  0.35123967 0.45061224
## 551    HiC_scaffold_42  6744976 0.49586777 0.48979592  0.49500000 0.49836735
## 552    HiC_scaffold_42  8066919 0.43622449 0.49704142  0.46875000 0.48389218
## 553    HiC_scaffold_42  8068292 0.48816568 0.46875000  0.48347107 0.49652778
## 554    HiC_scaffold_42 12487888 0.49704142 0.46875000  0.45500000 0.48000000
## 555    HiC_scaffold_42 41366687 0.42603550 0.35123967  0.27777778 0.36072531
## 556    HiC_scaffold_42 47313337 0.00000000 0.35714286  0.35069444 0.25147929
## 557    HiC_scaffold_42 47313338 0.00000000 0.33777778  0.35069444 0.24593750
## 558    HiC_scaffold_42 50784971 0.48347107 0.45918367  0.48611111 0.47662527
## 559    HiC_scaffold_42 50784977 0.46875000 0.47337278  0.49586777 0.48109568
## 560    HiC_scaffold_42 50784981 0.50000000 0.50000000  0.50000000 0.50000000
## 561    HiC_scaffold_42 51916989 0.00000000 0.26035503  0.00000000 0.10775510
## 562    HiC_scaffold_43  3842003 0.06887755 0.07986111  0.18000000 0.10493827
## 563    HiC_scaffold_43 14140861 0.49500000 0.48979592  0.50000000 0.49632653
## 564    HiC_scaffold_43 15053605 0.15277778 0.06887755  0.19753086 0.13265306
## 565    HiC_scaffold_43 17289945 0.47530864 0.48979592  0.37500000 0.45918367
## 566    HiC_scaffold_43 29967704 0.49704142 0.49382716  0.50000000 0.50000000
## 567    HiC_scaffold_43 35745831 0.50000000 0.50000000  0.48000000 0.49853908
## 568    HiC_scaffold_43 37627949 0.49586777 0.49111111  0.46280992 0.48685172
## 569    HiC_scaffold_43 37628126 0.48611111 0.50000000  0.50000000 0.49836735
## 570    HiC_scaffold_43 44017118 0.35502959 0.48816568  0.39669421 0.42841490
## 571    HiC_scaffold_43 55124138 0.41319444 0.48979592  0.50000000 0.48303324
## 572    HiC_scaffold_43 60107326 0.48347107 0.45918367  0.37500000 0.49632653
## 573    HiC_scaffold_43 61359386 0.48816568 0.35502959  0.49500000 0.46141975
## 574    HiC_scaffold_43 61702593 0.49704142 0.39111111  0.39669421 0.44444444
## 575    HiC_scaffold_43 61702606 0.49704142 0.39111111  0.39669421 0.44444444
## 576    HiC_scaffold_43 61702721 0.44444444 0.48979592  0.50000000 0.48979592
## 577    HiC_scaffold_43 61702738 0.48611111 0.48816568  0.25500000 0.45061224
## 578    HiC_scaffold_43 62511703 0.49777778 0.37500000  0.47530864 0.46875000
## 579    HiC_scaffold_43 64069457 0.23553719 0.49704142  0.44444444 0.43479938
## 580    HiC_scaffold_43 64577269 0.00000000 0.37500000  0.39669421 0.29591049
## 581    HiC_scaffold_44  1920144 0.49652778 0.49111111  0.50000000 0.49704142
## 582    HiC_scaffold_44  2148035 0.39349112 0.40816327  0.49500000 0.45580716
## 583    HiC_scaffold_44  2568167 0.37500000 0.47337278  0.41319444 0.49632653
## 584    HiC_scaffold_45  4180070 0.24489796 0.46875000  0.44444444 0.39551020
## 585    HiC_scaffold_45  4797754 0.57397959 0.64462810  0.48000000 0.60122449
## 586    HiC_scaffold_45  5911123 0.49744898 0.48347107  0.49500000 0.49346939
## 587    HiC_scaffold_45  6958990 0.35123967 0.48000000  0.34567901 0.42000000
## 588    HiC_scaffold_45  8516216 0.27777778 0.31065089  0.39669421 0.32986111
## 589    HiC_scaffold_45 10191213 0.46280992 0.46444444  0.47530864 0.46693878
## 590    HiC_scaffold_45 12005885 0.50000000 0.49744898  0.46280992 0.49382716
## 591    HiC_scaffold_45 12006766 0.49500000 0.43622449  0.49586777 0.49632653
## 592    HiC_scaffold_45 24736172 0.45918367 0.42603550  0.48347107 0.45810249
## 593    HiC_scaffold_45 24739830 0.50000000 0.49704142  0.41319444 0.48816568
## 594    HiC_scaffold_46  9691567 0.31065089 0.50000000  0.48347107 0.48611111
## 595    HiC_scaffold_46 17380257 0.49500000 0.47704082  0.45266272 0.47662527
## 596    HiC_scaffold_46 18387147 0.50000000 0.37500000  0.25500000 0.42438272
## 597    HiC_scaffold_46 37092355 0.48000000 0.37500000  0.49586777 0.47387755
## 598    HiC_scaffold_46 39183624 0.42603550 0.49652778  0.49586777 0.48109568
## 599    HiC_scaffold_46 39390547 0.49652778 0.31065089  0.45500000 0.44122449
## 600    HiC_scaffold_46 42964941 0.37500000 0.48000000  0.49382716 0.47530864
## 601    HiC_scaffold_46 42986653 0.48347107 0.37500000  0.45500000 0.48530612
## 602    HiC_scaffold_46 52074364 0.32986111 0.06887755  0.25500000 0.21875000
## 603    HiC_scaffold_46 54255667 0.26035503 0.14201183  0.23553719 0.21365961
## 604    HiC_scaffold_47  3750532 0.32000000 0.24489796  0.39669421 0.46693878
## 605    HiC_scaffold_47  3751345 0.37500000 0.43388430  0.50000000 0.49652778
## 606    HiC_scaffold_47 15400639 0.18000000 0.33673469  0.07986111 0.21875000
## 607    HiC_scaffold_47 24072414 0.43622449 0.48611111  0.49652778 0.49445983
## 608    HiC_scaffold_47 25273825 0.46875000 0.49704142  0.49500000 0.48979592
## 609    HiC_scaffold_48  8752752 0.45486111 0.41777778  0.21875000 0.39714286
## 610    HiC_scaffold_48 10765920 0.50000000 0.24489796  0.43388430 0.42841490
## 611    HiC_scaffold_48 16077918 0.48347107 0.40816327  0.49586777 0.49652778
## 612    HiC_scaffold_48 16077940 0.45266272 0.44444444  0.39669421 0.43556870
## 613    HiC_scaffold_48 16411609 0.18000000 0.40816327  0.48347107 0.39551020
## 614    HiC_scaffold_48 19972580 0.48979592 0.48611111  0.48611111 0.49861496
## 615    HiC_scaffold_48 23493079 0.49652778 0.48000000  0.35502959 0.47468750
## 616    HiC_scaffold_48 23597210 0.45266272 0.49704142  0.29752066 0.46347699
## 617    HiC_scaffold_48 24478493 0.39669421 0.43622449  0.42000000 0.42000000
## 618    HiC_scaffold_48 24881148 0.41319444 0.46280992  0.50000000 0.49845679
## 619    HiC_scaffold_48 25865723 0.15277778 0.08677686  0.31065089 0.19753086
## 620    HiC_scaffold_48 25984068 0.49652778 0.48816568  0.48000000 0.48979592
## 621    HiC_scaffold_48 25989079 0.48347107 0.37500000  0.49652778 0.46693878
## 622    HiC_scaffold_48 30601375 0.49586777 0.50000000  0.39669421 0.48530612
## 623    HiC_scaffold_48 31662115 0.25500000 0.33673469  0.29752066 0.30244898
## 624    HiC_scaffold_48 41971562 0.50000000 0.49586777  0.48816568 0.49959184
## 625    HiC_scaffold_49  3392801 0.44444444 0.46875000  0.32986111 0.42438272
## 626    HiC_scaffold_49  6101692 0.07986111 0.23553719  0.15277778 0.15673469
## 627    HiC_scaffold_49  7996315 0.48611111 0.35502959  0.46875000 0.44740687
## 628    HiC_scaffold_49  9470474 0.42603550 0.48816568  0.35123967 0.43827611
## 629    HiC_scaffold_49  9886007 0.39111111 0.48000000  0.49652778 0.48685172
## 630    HiC_scaffold_49 12592113 0.39669421 0.44444444  0.41319444 0.42000000
## 631    HiC_scaffold_49 12741575 0.35502959 0.49586777  0.48347107 0.48530612
## 632    HiC_scaffold_49 15135019 0.08677686 0.00000000  0.46280992 0.22408163
## 633    HiC_scaffold_49 25906219 0.39669421 0.42603550  0.48347107 0.44122449
## 634    HiC_scaffold_49 26614199 0.49382716 0.49777778  0.37500000 0.48611111
## 635    HiC_scaffold_49 26655554 0.44444444 0.42603550  0.46875000 0.44740687
## 636    HiC_scaffold_49 37568341 0.49500000 0.47337278  0.49652778 0.49959184
## 637    HiC_scaffold_49 37568353 0.49500000 0.47337278  0.49652778 0.49959184
## 638    HiC_scaffold_49 40002255 0.43622449 0.49704142  0.18000000 0.42841490
## 639    HiC_scaffold_49 40003229 0.49652778 0.42000000  0.48000000 0.47041636
## 640    HiC_scaffold_49 42966376 0.46280992 0.49777778  0.45500000 0.49035494
## 641     HiC_scaffold_5   801252 0.44444444 0.46875000  0.49586777 0.49836735
## 642     HiC_scaffold_5  1446603 0.50000000 0.49111111  0.49500000 0.49652778
## 643     HiC_scaffold_5  1446611 0.50000000 0.49111111  0.49500000 0.49652778
## 644     HiC_scaffold_5  1530759 0.42000000 0.48979592  0.41319444 0.49652778
## 645     HiC_scaffold_5  1539275 0.25510204 0.13265306  0.29166667 0.22625000
## 646     HiC_scaffold_5  1789576 0.48347107 0.42000000  0.44444444 0.45061224
## 647     HiC_scaffold_5  1808197 0.49704142 0.37500000  0.50000000 0.48979592
## 648     HiC_scaffold_5  1808204 0.49704142 0.29336735  0.48000000 0.44740687
## 649     HiC_scaffold_5  1943895 0.39349112 0.31065089  0.34567901 0.35265306
## 650     HiC_scaffold_5  1944469 0.45918367 0.32986111  0.39669421 0.40650110
## 651     HiC_scaffold_5  2857283 0.50000000 0.49586777  0.47337278 0.49346939
## 652     HiC_scaffold_5  4061378 0.46875000 0.43622449  0.49652778 0.49965374
## 653     HiC_scaffold_5  4340647 0.46280992 0.49652778  0.50000000 0.49346939
## 654     HiC_scaffold_5  4435246 0.39349112 0.31065089  0.49500000 0.41319444
## 655     HiC_scaffold_5  8868783 0.49586777 0.49777778  0.49500000 0.49961420
## 656    HiC_scaffold_50  4315969 0.49586777 0.48611111  0.44444444 0.49959184
## 657    HiC_scaffold_50 11652296 0.32000000 0.13265306  0.00000000 0.15673469
## 658    HiC_scaffold_50 11657309 0.47530864 0.39349112  0.42603550 0.43102041
## 659    HiC_scaffold_50 15521027 0.25500000 0.49111111  0.46280992 0.44444444
## 660    HiC_scaffold_50 21050962 0.40816327 0.49586777  0.35123967 0.43479938
## 661    HiC_scaffold_50 23686202 0.20414201 0.45266272  0.48000000 0.40123457
## 662    HiC_scaffold_50 27393462 0.49704142 0.42603550  0.27777778 0.44122449
## 663    HiC_scaffold_50 42586883 0.46875000 0.43622449  0.44444444 0.45013850
## 664    HiC_scaffold_50 45087211 0.48000000 0.45918367  0.43388430 0.48530612
## 665    HiC_scaffold_50 49796550 0.26035503 0.00000000  0.00000000 0.10775510
## 666    HiC_scaffold_50 54383367 0.41319444 0.45918367  0.47530864 0.45061224
## 667    HiC_scaffold_50 63318678 0.37500000 0.37500000  0.37500000 0.37500000
## 668    HiC_scaffold_51  3521000 0.50000000 0.37500000  0.49586777 0.47530864
## 669    HiC_scaffold_51  4681905 0.43388430 0.39669421  0.31065089 0.38204082
## 670    HiC_scaffold_51  6305599 0.24380165 0.59777778  0.46000000 0.48572531
## 671    HiC_scaffold_51  8530818 0.49652778 0.43622449  0.44444444 0.49861496
## 672    HiC_scaffold_51 11653312 0.49652778 0.46875000  0.39669421 0.46693878
## 673    HiC_scaffold_51 13138547 0.07986111 0.20414201  0.23553719 0.17554012
## 674    HiC_scaffold_51 14457091 0.48347107 0.42000000  0.42000000 0.44444444
## 675    HiC_scaffold_51 15512668 0.50000000 0.48979592  0.50000000 0.49845679
## 676    HiC_scaffold_51 17816346 0.42603550 0.42603550  0.45266272 0.43556870
## 677    HiC_scaffold_51 19997934 0.15277778 0.42603550  0.37500000 0.33673469
## 678    HiC_scaffold_51 19997936 0.15277778 0.42603550  0.37500000 0.33673469
## 679    HiC_scaffold_51 20870773 0.47704082 0.43388430  0.35502959 0.43213296
## 680    HiC_scaffold_51 26660104 0.45266272 0.41319444  0.49652778 0.47662527
## 681    HiC_scaffold_51 40727521 0.41319444 0.48979592  0.49500000 0.48611111
## 682    HiC_scaffold_51 40892841 0.47337278 0.42603550  0.48347107 0.46347699
## 683    HiC_scaffold_51 41717519 0.49652778 0.47704082  0.50000000 0.49346939
## 684    HiC_scaffold_51 42547638 0.37500000 0.20414201  0.32986111 0.30244898
## 685    HiC_scaffold_52  3335804 0.48816568 0.50000000  0.39349112 0.47530864
## 686    HiC_scaffold_52  4149130 0.48347107 0.45266272  0.43388430 0.45918367
## 687    HiC_scaffold_52  6893679 0.29752066 0.00000000  0.08677686 0.13265306
## 688    HiC_scaffold_52 13155416 0.41319444 0.06887755  0.16528926 0.23374726
## 689    HiC_scaffold_52 13155437 0.32986111 0.06887755  0.18000000 0.19753086
## 690    HiC_scaffold_52 13155442 0.32986111 0.07396450  0.18000000 0.20244898
## 691    HiC_scaffold_52 14885688 0.42603550 0.49704142  0.37500000 0.45331790
## 692    HiC_scaffold_52 14895078 0.35123967 0.49704142  0.41319444 0.44444444
## 693    HiC_scaffold_52 15141791 0.39669421 0.50000000  0.46280992 0.49845679
## 694    HiC_scaffold_52 15743051 0.41319444 0.49777778  0.48000000 0.47662527
## 695    HiC_scaffold_52 15760201 0.48816568 0.48347107  0.41319444 0.49035494
## 696    HiC_scaffold_52 15834589 0.39669421 0.39349112  0.48347107 0.43102041
## 697    HiC_scaffold_52 15841769 0.41319444 0.45266272  0.43388430 0.43479938
## 698    HiC_scaffold_52 15862421 0.48816568 0.48347107  0.29752066 0.48000000
## 699    HiC_scaffold_52 15970970 0.62000000 0.53826531  0.41735537 0.53591837
## 700    HiC_scaffold_52 16275237 0.47337278 0.50000000  0.49500000 0.49853908
## 701    HiC_scaffold_52 16275240 0.43388430 0.49744898  0.39669421 0.46141975
## 702    HiC_scaffold_52 16275290 0.27777778 0.45918367  0.46875000 0.43102041
## 703    HiC_scaffold_52 16524164 0.35502959 0.40816327  0.50000000 0.44148199
## 704    HiC_scaffold_52 16524572 0.21875000 0.26035503  0.00000000 0.17554012
## 705    HiC_scaffold_52 16525647 0.48611111 0.48979592  0.50000000 0.49382716
## 706    HiC_scaffold_52 16637047 0.39669421 0.45918367  0.42000000 0.48979592
## 707    HiC_scaffold_52 17202127 0.37500000 0.35502959  0.48816568 0.42438272
## 708    HiC_scaffold_52 17207724 0.32986111 0.35123967  0.32986111 0.33673469
## 709    HiC_scaffold_52 17508820 0.39669421 0.49744898  0.35123967 0.44444444
## 710    HiC_scaffold_52 17547593 0.49704142 0.49652778  0.41319444 0.48210373
## 711    HiC_scaffold_52 17551239 0.39349112 0.50000000  0.49500000 0.49134349
## 712    HiC_scaffold_52 17560696 0.46875000 0.47337278  0.49500000 0.49959184
## 713    HiC_scaffold_52 17560699 0.46875000 0.48816568  0.49500000 0.49836735
## 714    HiC_scaffold_52 17741250 0.46875000 0.46875000  0.49586777 0.48979592
## 715    HiC_scaffold_52 17742260 0.48347107 0.44444444  0.44444444 0.49836735
## 716    HiC_scaffold_52 18340578 0.49652778 0.49744898  0.50000000 0.49836735
## 717    HiC_scaffold_52 18415911 0.49500000 0.47704082  0.48611111 0.49845679
## 718    HiC_scaffold_52 22189517 0.50000000 0.48816568  0.48816568 0.49382716
## 719    HiC_scaffold_52 22526592 0.48611111 0.49652778  0.37500000 0.48109568
## 720    HiC_scaffold_52 26393471 0.48347107 0.41319444  0.49652778 0.48530612
## 721    HiC_scaffold_52 26799380 0.44444444 0.49704142  0.48347107 0.49035494
## 722    HiC_scaffold_52 31871931 0.48347107 0.46875000  0.48611111 0.49632653
## 723    HiC_scaffold_52 31874283 0.21875000 0.18000000  0.21875000 0.20244898
## 724    HiC_scaffold_52 31874287 0.21875000 0.49777778  0.41319444 0.42603550
## 725    HiC_scaffold_52 32161053 0.27777778 0.06444444  0.09500000 0.15968750
## 726    HiC_scaffold_52 33165557 0.40123457 0.47704082  0.49652778 0.49836735
## 727    HiC_scaffold_52 33897620 0.37500000 0.45266272  0.48816568 0.45331790
## 728    HiC_scaffold_52 34763156 0.50000000 0.49586777  0.49586777 0.50000000
## 729    HiC_scaffold_52 34763171 0.45918367 0.49586777  0.48611111 0.48210373
## 730    HiC_scaffold_52 35174755 0.41319444 0.35502959  0.48000000 0.42000000
## 731    HiC_scaffold_52 35608453 0.44444444 0.49704142  0.44444444 0.48210373
## 732    HiC_scaffold_52 35608470 0.46875000 0.49704142  0.48611111 0.49415632
## 733    HiC_scaffold_52 39464728 0.48816568 0.46875000  0.32000000 0.45061224
## 734    HiC_scaffold_52 42141354 0.49652778 0.50000000  0.37500000 0.49382716
## 735    HiC_scaffold_52 44675725 0.08677686 0.21875000  0.15277778 0.15673469
## 736    HiC_scaffold_52 49935920 0.48611111 0.48816568  0.49500000 0.48979592
## 737    HiC_scaffold_53 21789524 0.32000000 0.45918367  0.44444444 0.42438272
## 738    HiC_scaffold_53 25168042 0.43388430 0.48816568  0.49652778 0.48109568
## 739    HiC_scaffold_53 26398989 0.50000000 0.26035503  0.48611111 0.45061224
## 740    HiC_scaffold_53 26398992 0.50000000 0.26035503  0.48611111 0.45061224
## 741    HiC_scaffold_53 26398994 0.50000000 0.26035503  0.48611111 0.45061224
## 742    HiC_scaffold_53 26549665 0.45266272 0.46280992  0.46280992 0.49346939
## 743    HiC_scaffold_53 29227676 0.50000000 0.49704142  0.50000000 0.49959184
## 744    HiC_scaffold_53 31250349 0.14201183 0.15277778  0.09500000 0.13265306
## 745    HiC_scaffold_54   530581 0.07396450 0.43388430  0.07986111 0.21875000
## 746    HiC_scaffold_54   794095 0.43388430 0.44444444  0.35502959 0.41319444
## 747    HiC_scaffold_54  1171109 0.27777778 0.50000000  0.35502959 0.43479938
## 748    HiC_scaffold_54  1378956 0.49744898 0.48816568  0.07986111 0.43556870
## 749    HiC_scaffold_54  1380539 0.35123967 0.35502959  0.44444444 0.38850309
## 750    HiC_scaffold_54  3045015 0.39669421 0.37500000  0.09500000 0.32000000
## 751    HiC_scaffold_54  3185987 0.48979592 0.48979592  0.42000000 0.47783934
## 752    HiC_scaffold_54  4401098 0.47530864 0.48000000  0.46280992 0.47387755
## 753    HiC_scaffold_54  5595903 0.43388430 0.45918367  0.39669421 0.49652778
## 754    HiC_scaffold_54  5595921 0.39669421 0.44444444  0.46875000 0.44122449
## 755    HiC_scaffold_54  5595928 0.48347107 0.45918367  0.37500000 0.44740687
## 756    HiC_scaffold_54  5595949 0.48000000 0.32000000  0.48611111 0.43827611
## 757    HiC_scaffold_54  6649662 0.49652778 0.39669421  0.50000000 0.49346939
## 758    HiC_scaffold_54  8036734 0.49744898 0.50000000  0.40123457 0.49652778
## 759    HiC_scaffold_54  9206614 0.43388430 0.45266272  0.43388430 0.49346939
## 760    HiC_scaffold_54 35913192 0.35502959 0.33673469  0.49652778 0.43556870
## 761    HiC_scaffold_54 35913282 0.49652778 0.47337278  0.48347107 0.49382716
## 762    HiC_scaffold_54 35913283 0.46875000 0.50000000  0.50000000 0.49632653
## 763    HiC_scaffold_55  1260491 0.25500000 0.29336735  0.35502959 0.30679328
## 764    HiC_scaffold_55  3254027 0.49744898 0.49111111  0.50000000 0.49968750
## 765    HiC_scaffold_55  3281985 0.50000000 0.41319444  0.46875000 0.49845679
## 766    HiC_scaffold_55  5409544 0.48347107 0.50000000  0.44444444 0.49836735
## 767    HiC_scaffold_55  5411094 0.08677686 0.26035503  0.32986111 0.23919753
## 768    HiC_scaffold_55  5411115 0.15277778 0.37500000  0.32986111 0.30055402
## 769    HiC_scaffold_55 18121799 0.33673469 0.23553719  0.35123967 0.31327160
## 770    HiC_scaffold_55 19605809 0.35123967 0.50000000  0.43388430 0.45918367
## 771    HiC_scaffold_55 19605817 0.46875000 0.45266272  0.27777778 0.41782323
## 772    HiC_scaffold_55 19605821 0.26035503 0.20414201  0.00000000 0.17129291
## 773    HiC_scaffold_55 20195204 0.43388430 0.50000000  0.29752066 0.45061224
## 774    HiC_scaffold_55 20886967 0.50000000 0.48611111  0.15277778 0.44444444
## 775    HiC_scaffold_55 23222937 0.50000000 0.35502959  0.49382716 0.47387755
## 776    HiC_scaffold_55 23626331 0.23553719 0.43622449  0.48347107 0.45331790
## 777    HiC_scaffold_55 24539590 0.50000000 0.35502959  0.49500000 0.47387755
## 778    HiC_scaffold_55 24585939 0.37500000 0.49586777  0.48000000 0.45918367
## 779    HiC_scaffold_55 34174151 0.50000000 0.49704142  0.46875000 0.49853908
## 780    HiC_scaffold_56 17874332 0.46280992 0.49652778  0.49652778 0.49632653
## 781    HiC_scaffold_56 18635259 0.50000000 0.48000000  0.39669421 0.47662527
## 782    HiC_scaffold_56 23654344 0.39669421 0.47337278  0.35123967 0.42000000
## 783    HiC_scaffold_56 35850533 0.45266272 0.23111111  0.50000000 0.43307555
## 784    HiC_scaffold_56 35850539 0.39349112 0.46444444  0.37500000 0.42000000
## 785    HiC_scaffold_56 40813556 0.50000000 0.49704142  0.48816568 0.49632653
## 786    HiC_scaffold_56 53211633 0.29752066 0.43388430  0.48816568 0.43102041
## 787    HiC_scaffold_56 60070829 0.35502959 0.19132653  0.07986111 0.22353715
## 788    HiC_scaffold_56 73286017 0.46875000 0.49652778  0.46280992 0.48000000
## 789    HiC_scaffold_56 73829442 0.18500000 0.13520408  0.29166667 0.20370370
## 790    HiC_scaffold_56 73829443 0.16942149 0.12666667  0.29166667 0.19390582
## 791    HiC_scaffold_56 76060304 0.35123967 0.49704142  0.45266272 0.47041636
## 792    HiC_scaffold_57 25306408 0.49652778 0.50000000  0.48611111 0.49632653
## 793    HiC_scaffold_57 29222385 0.45266272 0.35502959  0.44444444 0.42000000
## 794    HiC_scaffold_57 29592432 0.50000000 0.39349112  0.46280992 0.46693878
## 795    HiC_scaffold_57 31472698 0.43622449 0.48611111  0.27777778 0.43102041
## 796    HiC_scaffold_57 32371742 0.37500000 0.48000000  0.44444444 0.44740687
## 797    HiC_scaffold_57 36495072 0.49704142 0.44444444  0.23553719 0.43479938
## 798    HiC_scaffold_57 37286264 0.46875000 0.43622449  0.44444444 0.49959184
## 799    HiC_scaffold_57 38537415 0.50000000 0.37500000  0.50000000 0.48530612
## 800    HiC_scaffold_57 45438854 0.57438017 0.48979592  0.55500000 0.62367347
## 801    HiC_scaffold_57 52856874 0.49652778 0.07986111  0.48347107 0.42000000
## 802    HiC_scaffold_57 53575355 0.50000000 0.48000000  0.49586777 0.49415632
## 803    HiC_scaffold_57 55856783 0.34567901 0.46444444  0.39669421 0.48530612
## 804    HiC_scaffold_58  1362614 0.31065089 0.50000000  0.49586777 0.46875000
## 805    HiC_scaffold_58  1432845 0.21875000 0.19132653  0.00000000 0.14901388
## 806    HiC_scaffold_58  1541720 0.20414201 0.32248521  0.44444444 0.33632653
## 807    HiC_scaffold_58  2777120 0.48611111 0.46875000  0.46875000 0.49382716
## 808    HiC_scaffold_58  2973169 0.20414201 0.00000000  0.14201183 0.13265306
## 809    HiC_scaffold_58  3243043 0.45918367 0.45266272  0.37500000 0.44122449
## 810    HiC_scaffold_58  4035282 0.35123967 0.49744898  0.50000000 0.48979592
## 811    HiC_scaffold_58  5442157 0.50000000 0.48000000  0.46280992 0.48530612
## 812    HiC_scaffold_58  8004631 0.35502959 0.42000000  0.49382716 0.44740687
## 813    HiC_scaffold_58  8058998 0.43388430 0.46444444  0.34567901 0.43102041
## 814    HiC_scaffold_58  8932837 0.48979592 0.49704142  0.48347107 0.49965374
## 815    HiC_scaffold_58 14814944 0.43388430 0.39349112  0.46280992 0.43102041
## 816    HiC_scaffold_58 15639988 0.29752066 0.49586777  0.47337278 0.45061224
## 817    HiC_scaffold_58 15707198 0.37500000 0.35123967  0.31065089 0.34567901
## 818    HiC_scaffold_58 15707258 0.39669421 0.40816327  0.25500000 0.36775510
## 819    HiC_scaffold_58 15710623 0.39349112 0.46444444  0.48347107 0.45266272
## 820    HiC_scaffold_58 19155063 0.47337278 0.40123457  0.47337278 0.45918367
## 821    HiC_scaffold_58 20224050 0.48347107 0.47337278  0.50000000 0.48979592
## 822    HiC_scaffold_58 38475355 0.29752066 0.14201183  0.27777778 0.23919753
## 823    HiC_scaffold_59  3979055 0.50000000 0.45918367  0.49586777 0.49632653
## 824    HiC_scaffold_59  5071810 0.48000000 0.50000000  0.49586777 0.49959184
## 825    HiC_scaffold_59  5349936 0.39349112 0.49586777  0.31065089 0.43827611
## 826    HiC_scaffold_59  5350114 0.47530864 0.50000000  0.21875000 0.45061224
## 827    HiC_scaffold_59  7738302 0.50000000 0.48979592  0.48816568 0.49415632
## 828    HiC_scaffold_59  7738351 0.46280992 0.48979592  0.45500000 0.47387755
## 829    HiC_scaffold_59  7958561 0.49652778 0.37500000  0.37500000 0.45013850
## 830    HiC_scaffold_59  9273798 0.37500000 0.48816568  0.46280992 0.45013850
## 831    HiC_scaffold_59 50928099 0.32986111 0.46875000  0.48611111 0.44444444
## 832    HiC_scaffold_59 52960060 0.29752066 0.43622449  0.48000000 0.42000000
## 833     HiC_scaffold_6 10569023 0.35123967 0.43388430  0.48816568 0.44122449
## 834     HiC_scaffold_6 10711445 0.49382716 0.50000000  0.46280992 0.49836735
## 835     HiC_scaffold_6 13209200 0.49704142 0.49777778  0.50000000 0.50000000
## 836     HiC_scaffold_6 13213107 0.48611111 0.23553719  0.46875000 0.43102041
## 837     HiC_scaffold_6 13311684 0.49652778 0.49704142  0.46280992 0.49035494
## 838     HiC_scaffold_6 15670783 0.49586777 0.48816568  0.43388430 0.49959184
## 839     HiC_scaffold_6 19111232 0.10493827 0.49704142  0.42603550 0.42000000
## 840     HiC_scaffold_6 32805498 0.42000000 0.45266272  0.32986111 0.40816327
## 841     HiC_scaffold_6 38793174 0.48347107 0.49744898  0.46875000 0.48685172
## 842     HiC_scaffold_6 41092101 0.50000000 0.50000000  0.48611111 0.49868508
## 843     HiC_scaffold_6 41342933 0.47337278 0.50000000  0.49586777 0.49845679
## 844     HiC_scaffold_6 47594508 0.45500000 0.35777778  0.46280992 0.42438272
## 845    HiC_scaffold_60    70878 0.15277778 0.29336735  0.19753086 0.22408163
## 846    HiC_scaffold_60    99549 0.48347107 0.29752066  0.47337278 0.44122449
## 847    HiC_scaffold_60   201823 0.49652778 0.39111111  0.35123967 0.43213296
## 848    HiC_scaffold_60   712969 0.32986111 0.26035503  0.37500000 0.32000000
## 849    HiC_scaffold_60   744783 0.48816568 0.48347107  0.50000000 0.50000000
## 850    HiC_scaffold_60   744788 0.45918367 0.46875000  0.44444444 0.45810249
## 851    HiC_scaffold_60 22142128 0.43388430 0.48611111  0.39349112 0.44444444
## 852    HiC_scaffold_60 27599770 0.00000000 0.23553719  0.16528926 0.13265306
## 853    HiC_scaffold_60 30608878 0.45266272 0.39349112  0.21875000 0.37500000
## 854    HiC_scaffold_60 32657324 0.49652778 0.41319444  0.48611111 0.47530864
## 855    HiC_scaffold_60 32672580 0.00000000 0.07396450  0.27777778 0.10775510
## 856    HiC_scaffold_60 38856893 0.47704082 0.39349112  0.46875000 0.45266272
## 857    HiC_scaffold_60 39028335 0.16528926 0.13265306  0.00000000 0.10775510
## 858    HiC_scaffold_60 40296869 0.50000000 0.35502959  0.43388430 0.45331790
## 859    HiC_scaffold_60 42775723 0.43622449 0.49744898  0.49652778 0.48468750
## 860    HiC_scaffold_60 44687906 0.23553719 0.48816568  0.48347107 0.44122449
## 861    HiC_scaffold_60 44804601 0.35123967 0.39669421  0.49704142 0.45918367
## 862    HiC_scaffold_60 53696867 0.31065089 0.48611111  0.49500000 0.45061224
## 863    HiC_scaffold_60 53696868 0.31065089 0.48611111  0.49500000 0.45061224
## 864    HiC_scaffold_60 60651515 0.49704142 0.45918367  0.49500000 0.48685172
## 865    HiC_scaffold_60 70678462 0.26035503 0.07396450  0.18000000 0.17554012
## 866    HiC_scaffold_61  2205328 0.50000000 0.43622449  0.29752066 0.44444444
## 867    HiC_scaffold_61  2491706 0.07396450 0.00000000  0.21875000 0.10493827
## 868    HiC_scaffold_61  4009916 0.35969388 0.22569444  0.55902778 0.41932133
## 869    HiC_scaffold_61  4062917 0.07396450 0.27218935  0.35069444 0.23718837
## 870    HiC_scaffold_61  4122763 0.18000000 0.15277778  0.14201183 0.15673469
## 871    HiC_scaffold_61  4216461 0.42603550 0.37500000  0.39669421 0.40123457
## 872    HiC_scaffold_61  4325053 0.45266272 0.46875000  0.42000000 0.45061224
## 873    HiC_scaffold_61  9004838 0.37500000 0.15277778  0.34567901 0.30244898
## 874    HiC_scaffold_61 14635083 0.49500000 0.49111111  0.48347107 0.49035494
## 875    HiC_scaffold_62  1128608 0.00000000 0.06887755  0.35123967 0.15673469
## 876    HiC_scaffold_62 11335200 0.40625000 0.15277778  0.43388430 0.33959184
## 877    HiC_scaffold_62 18828476 0.44444444 0.15277778  0.29752066 0.32000000
## 878    HiC_scaffold_62 21548870 0.10493827 0.07396450  0.14201183 0.10775510
## 879    HiC_scaffold_62 23103274 0.27777778 0.49111111  0.48347107 0.45918367
## 880    HiC_scaffold_62 25793456 0.41319444 0.49704142  0.48611111 0.47662527
## 881    HiC_scaffold_62 25887474 0.43388430 0.45266272  0.44444444 0.44444444
## 882    HiC_scaffold_62 28516096 0.35502959 0.49704142  0.49500000 0.49035494
## 883    HiC_scaffold_62 28516099 0.35502959 0.49704142  0.49500000 0.49035494
## 884    HiC_scaffold_62 28818725 0.50000000 0.43622449  0.48611111 0.49652778
## 885    HiC_scaffold_62 28818729 0.50000000 0.31065089  0.49652778 0.48000000
## 886    HiC_scaffold_62 45207353 0.35502959 0.45918367  0.48816568 0.44718750
## 887    HiC_scaffold_63  3092269 0.25500000 0.29336735  0.15277778 0.23919753
## 888    HiC_scaffold_63  3977940 0.39349112 0.37500000  0.50000000 0.44122449
## 889    HiC_scaffold_63  4084937 0.48816568 0.49586777  0.29752066 0.45918367
## 890    HiC_scaffold_63  4196326 0.50000000 0.45266272  0.50000000 0.49382716
## 891    HiC_scaffold_63  6262453 0.49500000 0.45266272  0.32986111 0.44122449
## 892    HiC_scaffold_63  6350204 0.31065089 0.24489796  0.37500000 0.30679328
## 893    HiC_scaffold_63  6458794 0.41319444 0.45266272  0.48000000 0.45061224
## 894    HiC_scaffold_64  9162978 0.42592593 0.25510204  0.20414201 0.29166667
## 895    HiC_scaffold_64 16876561 0.41319444 0.37500000  0.46280992 0.42000000
## 896    HiC_scaffold_64 17543009 0.48816568 0.43622449  0.40123457 0.45331790
## 897    HiC_scaffold_64 18925356 0.44444444 0.39349112  0.49704142 0.49346939
## 898    HiC_scaffold_64 19133050 0.48000000 0.48816568  0.45266272 0.47530864
## 899    HiC_scaffold_64 19627769 0.44444444 0.24489796  0.45500000 0.38850309
## 900    HiC_scaffold_64 20477250 0.23553719 0.46444444  0.49500000 0.49035494
## 901    HiC_scaffold_64 22816677 0.42603550 0.47704082  0.39669421 0.44148199
## 902    HiC_scaffold_64 22954654 0.40816327 0.19753086  0.44444444 0.38204082
## 903    HiC_scaffold_64 22954658 0.40816327 0.19753086  0.44444444 0.38204082
## 904    HiC_scaffold_64 22954682 0.33673469 0.25500000  0.35123967 0.32000000
## 905    HiC_scaffold_65  6829971 0.49586777 0.33673469  0.37500000 0.43827611
## 906    HiC_scaffold_65  8071102 0.48347107 0.26035503  0.50000000 0.45061224
## 907    HiC_scaffold_65  9023979 0.44444444 0.39349112  0.42000000 0.42000000
## 908    HiC_scaffold_65  9839671 0.48347107 0.39349112  0.48347107 0.48530612
## 909    HiC_scaffold_65 10404778 0.45918367 0.41319444  0.48347107 0.45580716
## 910    HiC_scaffold_65 11327791 0.27777778 0.24489796  0.00000000 0.19753086
## 911    HiC_scaffold_65 11332104 0.46280992 0.48816568  0.49652778 0.48611111
## 912    HiC_scaffold_65 34823822 0.35123967 0.26035503  0.46280992 0.44122449
## 913    HiC_scaffold_65 51418017 0.00000000 0.19132653  0.15277778 0.12600438
## 914    HiC_scaffold_65 54053979 0.29752066 0.26035503  0.35123967 0.30244898
## 915    HiC_scaffold_65 57110875 0.48611111 0.48611111  0.46280992 0.49632653
## 916    HiC_scaffold_66 15615363 0.49652778 0.50000000  0.32000000 0.48109568
## 917    HiC_scaffold_66 15672090 0.46875000 0.26035503  0.48347107 0.42438272
## 918    HiC_scaffold_66 17903445 0.39669421 0.49704142  0.39669421 0.46693878
## 919    HiC_scaffold_66 18298629 0.48000000 0.47704082  0.39669421 0.48530612
## 920    HiC_scaffold_66 19730676 0.31065089 0.46280992  0.43388430 0.46693878
## 921    HiC_scaffold_66 23688768 0.49704142 0.42603550  0.46280992 0.49963477
## 922    HiC_scaffold_66 26614535 0.23777778 0.29166667  0.35069444 0.29092702
## 923    HiC_scaffold_66 27445665 0.48611111 0.35502959  0.46280992 0.44444444
## 924    HiC_scaffold_66 29457165 0.32986111 0.45918367  0.49586777 0.44740687
## 925    HiC_scaffold_66 29457180 0.47337278 0.39349112  0.50000000 0.47041636
## 926    HiC_scaffold_66 30116287 0.21005917 0.40277778  0.07986111 0.24251278
## 927    HiC_scaffold_66 31603503 0.46280992 0.31065089  0.46875000 0.42438272
## 928    HiC_scaffold_66 33261460 0.44444444 0.49744898  0.32000000 0.45331790
## 929    HiC_scaffold_66 34138981 0.46875000 0.48816568  0.49500000 0.50000000
## 930    HiC_scaffold_66 34139020 0.50000000 0.49704142  0.44444444 0.48979592
## 931    HiC_scaffold_66 34142862 0.50000000 0.42603550  0.42603550 0.46347699
## 932    HiC_scaffold_67  1404390 0.50000000 0.49652778  0.49704142 0.50000000
## 933    HiC_scaffold_67 28493665 0.42603550 0.47337278  0.49382716 0.46693878
## 934    HiC_scaffold_67 30243885 0.45918367 0.35502959  0.48000000 0.43827611
## 935    HiC_scaffold_67 31511806 0.32000000 0.45918367  0.48347107 0.47387755
## 936    HiC_scaffold_67 34638092 0.48347107 0.45266272  0.46875000 0.46875000
## 937    HiC_scaffold_67 37534720 0.35123967 0.40816327  0.48000000 0.49836735
## 938    HiC_scaffold_67 39679546 0.42603550 0.41319444  0.42000000 0.42000000
## 939    HiC_scaffold_67 39854918 0.48347107 0.45918367  0.49500000 0.48000000
## 940    HiC_scaffold_67 39860738 0.50000000 0.45266272  0.46875000 0.48000000
## 941    HiC_scaffold_67 40331656 0.43388430 0.48979592  0.18000000 0.42000000
## 942    HiC_scaffold_67 40824747 0.00000000 0.15277778  0.21875000 0.13265306
## 943    HiC_scaffold_68  3438132 0.07396450 0.37500000  0.18000000 0.23374726
## 944    HiC_scaffold_68  3438133 0.07396450 0.37500000  0.18000000 0.23374726
## 945    HiC_scaffold_68 11206902 0.48611111 0.43388430  0.44444444 0.45918367
## 946    HiC_scaffold_68 32770607 0.49652778 0.39349112  0.42000000 0.45061224
## 947    HiC_scaffold_68 34016823 0.51239669 0.39030612  0.57100592 0.49619114
## 948    HiC_scaffold_68 34020019 0.47337278 0.48611111  0.46280992 0.47530864
## 949    HiC_scaffold_68 40296057 0.20414201 0.44444444  0.49586777 0.43479938
## 950    HiC_scaffold_68 40296059 0.20414201 0.44444444  0.49586777 0.43479938
## 951    HiC_scaffold_68 65001879 0.34567901 0.40816327  0.44444444 0.40816327
## 952    HiC_scaffold_69 23311147 0.52071006 0.31404959  0.48611111 0.46141975
## 953    HiC_scaffold_69 27351303 0.26035503 0.43388430  0.49586777 0.42000000
## 954    HiC_scaffold_69 29437208 0.44444444 0.24489796  0.37500000 0.35265306
## 955    HiC_scaffold_69 33699381 0.16528926 0.00000000  0.15277778 0.10775510
## 956    HiC_scaffold_69 40194698 0.45266272 0.31065089  0.43388430 0.40650110
## 957    HiC_scaffold_69 48273575 0.49652778 0.26035503  0.45500000 0.43102041
## 958    HiC_scaffold_69 48348026 0.44444444 0.49777778  0.49652778 0.48816568
## 959    HiC_scaffold_69 48348034 0.31065089 0.43622449  0.49652778 0.43556870
## 960    HiC_scaffold_69 49563252 0.48979592 0.49744898  0.46280992 0.48816568
## 961    HiC_scaffold_69 49593952 0.39669421 0.45266272  0.48347107 0.48000000
## 962    HiC_scaffold_69 49859037 0.10493827 0.47704082  0.41319444 0.45918367
## 963    HiC_scaffold_69 51271238 0.47530864 0.46444444  0.50000000 0.48530612
## 964    HiC_scaffold_69 51529836 0.50000000 0.33673469  0.35123967 0.42000000
## 965    HiC_scaffold_69 57313650 0.50000000 0.35777778  0.41319444 0.43102041
## 966    HiC_scaffold_69 57359194 0.44444444 0.49777778  0.46875000 0.48109568
## 967  HiC_scaffold_6951   523650 0.47337278 0.49652778  0.45500000 0.48979592
## 968  HiC_scaffold_6951   897126 0.49704142 0.40816327  0.48611111 0.47337278
## 969  HiC_scaffold_6951  1134482 0.48611111 0.49744898  0.40123457 0.48000000
## 970  HiC_scaffold_6951  2484960 0.50000000 0.35502959  0.43388430 0.45331790
## 971  HiC_scaffold_6951  3301273 0.49500000 0.48979592  0.49586777 0.49836735
## 972  HiC_scaffold_6951  3314609 0.49704142 0.49744898  0.42968750 0.49632653
## 973  HiC_scaffold_6951  3945993 0.32000000 0.47704082  0.39669421 0.42000000
## 974  HiC_scaffold_6958   218293 0.07986111 0.38000000  0.38165680 0.30375000
## 975  HiC_scaffold_6958   449143 0.48000000 0.49704142  0.46280992 0.49967127
## 976     HiC_scaffold_7   351023 0.50000000 0.45266272  0.48611111 0.49836735
## 977     HiC_scaffold_7   488024 0.39669421 0.47337278  0.44444444 0.44444444
## 978     HiC_scaffold_7   492663 0.32000000 0.49744898  0.21875000 0.40123457
## 979     HiC_scaffold_7   693567 0.43388430 0.47704082  0.49500000 0.48530612
## 980     HiC_scaffold_7  2379128 0.37500000 0.42603550  0.49652778 0.45061224
## 981     HiC_scaffold_7  3087721 0.49652778 0.29336735  0.29752066 0.39444850
## 982     HiC_scaffold_7  3394880 0.48347107 0.48000000  0.47337278 0.49868508
## 983     HiC_scaffold_7 22247106 0.46280992 0.42000000  0.50000000 0.46693878
## 984    HiC_scaffold_70  4632611 0.48347107 0.49744898  0.48611111 0.49963477
## 985    HiC_scaffold_70 14042778 0.50000000 0.37500000  0.35123967 0.44122449
## 986    HiC_scaffold_71   410844 0.45500000 0.45918367  0.46875000 0.46141975
## 987    HiC_scaffold_71  1753451 0.39349112 0.47337278  0.42000000 0.43479938
## 988    HiC_scaffold_71  2283682 0.35123967 0.40816327  0.49586777 0.45331790
## 989    HiC_scaffold_71  3439685 0.21875000 0.30867347  0.26923077 0.27087442
## 990    HiC_scaffold_71 17850462 0.45266272 0.48816568  0.49382716 0.49632653
## 991    HiC_scaffold_71 20588314 0.49586777 0.46444444  0.50000000 0.49134349
## 992    HiC_scaffold_71 25465351 0.50000000 0.48611111  0.48347107 0.49382716
## 993    HiC_scaffold_71 25465352 0.50000000 0.48611111  0.48347107 0.49382716
## 994    HiC_scaffold_71 26356062 0.48347107 0.39349112  0.48347107 0.45918367
## 995    HiC_scaffold_72 11785096 0.29752066 0.45266272  0.48611111 0.43479938
## 996    HiC_scaffold_72 17285854 0.15277778 0.44444444  0.37500000 0.35265306
## 997    HiC_scaffold_72 23704999 0.50000000 0.39349112  0.27777778 0.42000000
## 998    HiC_scaffold_72 24465318 0.32000000 0.45918367  0.50000000 0.46141975
## 999    HiC_scaffold_72 30457277 0.46875000 0.35502959  0.48816568 0.45013850
## 1000   HiC_scaffold_72 32068649 0.48347107 0.49586777  0.47337278 0.48530612
## 1001   HiC_scaffold_72 35058295 0.49586777 0.39111111  0.48000000 0.46141975
## 1002   HiC_scaffold_72 36024997 0.49500000 0.48979592  0.48611111 0.49961420
## 1003   HiC_scaffold_72 37135067 0.40816327 0.46280992  0.48611111 0.45580716
## 1004   HiC_scaffold_72 38410141 0.48347107 0.37500000  0.32000000 0.40816327
## 1005   HiC_scaffold_72 38448056 0.47530864 0.44444444  0.44444444 0.45331790
## 1006   HiC_scaffold_72 41412511 0.44444444 0.49652778  0.23553719 0.43102041
## 1007   HiC_scaffold_73  2192629 0.48816568 0.49586777  0.49586777 0.49346939
## 1008   HiC_scaffold_73  2920208 0.47337278 0.42603550  0.50000000 0.47387755
## 1009   HiC_scaffold_73  4522493 0.00000000 0.18000000  0.15277778 0.10775510
## 1010   HiC_scaffold_73  4748625 0.48611111 0.47337278  0.25500000 0.44122449
## 1011   HiC_scaffold_73  5839336 0.50000000 0.00000000  0.16528926 0.27777778
## 1012   HiC_scaffold_73  9338582 0.39669421 0.48816568  0.46280992 0.48530612
## 1013   HiC_scaffold_73 27393859 0.42603550 0.39349112  0.47530864 0.43102041
## 1014   HiC_scaffold_74 14235619 0.29752066 0.43388430  0.50000000 0.49632653
## 1015   HiC_scaffold_74 14515598 0.10493827 0.12444444  0.23553719 0.15673469
## 1016   HiC_scaffold_74 15116121 0.35777778 0.44444444  0.49218750 0.45061224
## 1017   HiC_scaffold_74 17233613 0.39669421 0.33673469  0.32000000 0.35265306
## 1018   HiC_scaffold_74 17725340 0.40123457 0.42603550  0.45266272 0.43102041
## 1019   HiC_scaffold_74 18418135 0.48611111 0.48979592  0.47530864 0.49836735
## 1020   HiC_scaffold_74 18418138 0.48611111 0.44444444  0.42000000 0.48210373
## 1021   HiC_scaffold_74 21254425 0.14201183 0.29336735  0.23553719 0.22853186
## 1022   HiC_scaffold_74 22261065 0.50000000 0.45266272  0.48611111 0.48611111
## 1023   HiC_scaffold_74 47132519 0.43388430 0.45918367  0.49500000 0.48000000
## 1024   HiC_scaffold_74 50979096 0.49586777 0.50000000  0.39669421 0.48530612
## 1025   HiC_scaffold_74 51060549 0.49704142 0.43388430  0.44444444 0.46875000
## 1026   HiC_scaffold_74 53256803 0.46875000 0.49744898  0.45500000 0.48109568
## 1027   HiC_scaffold_74 55464169 0.49586777 0.49704142  0.43388430 0.49346939
## 1028   HiC_scaffold_74 55515512 0.50000000 0.39349112  0.48816568 0.47530864
## 1029   HiC_scaffold_74 55999260 0.40816327 0.35502959  0.50000000 0.43102041
## 1030   HiC_scaffold_74 57404902 0.48816568 0.49704142  0.42000000 0.48109568
## 1031   HiC_scaffold_74 58181927 0.50000000 0.49111111  0.49704142 0.49671293
## 1032   HiC_scaffold_74 58198600 0.47530864 0.49744898  0.49652778 0.49836735
## 1033   HiC_scaffold_74 63060195 0.27777778 0.31065089  0.25500000 0.28408163
## 1034   HiC_scaffold_75  5345466 0.48611111 0.42603550  0.37500000 0.44122449
## 1035   HiC_scaffold_75  5346522 0.47337278 0.48816568  0.48611111 0.48303324
## 1036   HiC_scaffold_75  5346535 0.47704082 0.48816568  0.48347107 0.48303324
## 1037   HiC_scaffold_75  9850973 0.32986111 0.49744898  0.42000000 0.44444444
## 1038   HiC_scaffold_76 27149820 0.49652778 0.40816327  0.46875000 0.47783934
## 1039   HiC_scaffold_76 31582908 0.50000000 0.43388430  0.48611111 0.48685172
## 1040   HiC_scaffold_76 31792815 0.45918367 0.32986111  0.48816568 0.44444444
## 1041   HiC_scaffold_76 35352820 0.46875000 0.44444444  0.44444444 0.49652778
## 1042   HiC_scaffold_76 57782171 0.46875000 0.37500000  0.40123457 0.48530612
## 1043   HiC_scaffold_76 59862401 0.48347107 0.49744898  0.49500000 0.49836735
## 1044   HiC_scaffold_76 61095594 0.50000000 0.47337278  0.50000000 0.49632653
## 1045   HiC_scaffold_76 65496128 0.39669421 0.49744898  0.50000000 0.48685172
## 1046   HiC_scaffold_76 68965847 0.42000000 0.48979592  0.49652778 0.48109568
## 1047   HiC_scaffold_76 68966411 0.39669421 0.42603550  0.48347107 0.47387755
## 1048   HiC_scaffold_76 69823482 0.48000000 0.48816568  0.48611111 0.49836735
## 1049   HiC_scaffold_76 73343841 0.42603550 0.15277778  0.37500000 0.33673469
## 1050   HiC_scaffold_77  3598274 0.29752066 0.47704082  0.46875000 0.43827611
## 1051   HiC_scaffold_77  6982137 0.50000000 0.32986111  0.48347107 0.46693878
## 1052   HiC_scaffold_77 11021994 0.32986111 0.33673469  0.27777778 0.31682825
## 1053   HiC_scaffold_77 13608165 0.45500000 0.39349112  0.47337278 0.44444444
## 1054   HiC_scaffold_77 16888594 0.35502959 0.49744898  0.49500000 0.48210373
## 1055   HiC_scaffold_77 16888623 0.46280992 0.43622449  0.46280992 0.45331790
## 1056   HiC_scaffold_77 16889448 0.50000000 0.37500000  0.43388430 0.46022354
## 1057   HiC_scaffold_77 39784685 0.44444444 0.40816327  0.45500000 0.43479938
## 1058   HiC_scaffold_77 44375866 0.49777778 0.29752066  0.48611111 0.48753463
## 1059   HiC_scaffold_77 45385370 0.42603550 0.47704082  0.46280992 0.45810249
## 1060   HiC_scaffold_78  5719919 0.49744898 0.44444444  0.49586777 0.49415632
## 1061   HiC_scaffold_78 11353297 0.49382716 0.40816327  0.39349112 0.45331790
## 1062   HiC_scaffold_78 27316392 0.49652778 0.44444444  0.49586777 0.48530612
## 1063   HiC_scaffold_78 48124809 0.21005917 0.57111111  0.00000000 0.34582512
## 1064   HiC_scaffold_78 48124826 0.48816568 0.23111111  0.46875000 0.45331790
## 1065   HiC_scaffold_78 48126176 0.48000000 0.50000000  0.37500000 0.47530864
## 1066   HiC_scaffold_78 48279096 0.49586777 0.44444444  0.45500000 0.46875000
## 1067   HiC_scaffold_78 48434558 0.42000000 0.47337278  0.46875000 0.49346939
## 1068   HiC_scaffold_78 49759181 0.45500000 0.44444444  0.45500000 0.49959184
## 1069   HiC_scaffold_78 49759192 0.46280992 0.45266272  0.32986111 0.42438272
## 1070   HiC_scaffold_78 49759215 0.44444444 0.40816327  0.48000000 0.44444444
## 1071   HiC_scaffold_78 51364025 0.09500000 0.20414201  0.07986111 0.13265306
## 1072   HiC_scaffold_78 55395445 0.49744898 0.49704142  0.19753086 0.48109568
## 1073   HiC_scaffold_78 59610866 0.48816568 0.46875000  0.42000000 0.49959184
## 1074   HiC_scaffold_78 62136661 0.49500000 0.39349112  0.42603550 0.46141975
## 1075   HiC_scaffold_79  1643780 0.49586777 0.29752066  0.48816568 0.45918367
## 1076   HiC_scaffold_79  2519178 0.00000000 0.19132653  0.16528926 0.12924383
## 1077   HiC_scaffold_79  2858100 0.46280992 0.42603550  0.35123967 0.47387755
## 1078   HiC_scaffold_79  3922454 0.32986111 0.42603550  0.49586777 0.43479938
## 1079   HiC_scaffold_79  4127878 0.48979592 0.39111111  0.44444444 0.44973230
## 1080   HiC_scaffold_79  4543693 0.48611111 0.35123967  0.50000000 0.47387755
## 1081   HiC_scaffold_79 11507678 0.46280992 0.47337278  0.43388430 0.49836735
## 1082   HiC_scaffold_79 12618812 0.50000000 0.45266272  0.44444444 0.47387755
## 1083   HiC_scaffold_79 14185404 0.33673469 0.07986111  0.00000000 0.17554012
## 1084   HiC_scaffold_79 17120237 0.49652778 0.45266272  0.50000000 0.49671293
## 1085   HiC_scaffold_79 17120254 0.49652778 0.48816568  0.48611111 0.49671293
## 1086   HiC_scaffold_79 35551507 0.49652778 0.48000000  0.49586777 0.49134349
## 1087   HiC_scaffold_79 35551543 0.48000000 0.48000000  0.50000000 0.49134349
## 1088   HiC_scaffold_79 38927423 0.48000000 0.46444444  0.37500000 0.45061224
## 1089   HiC_scaffold_79 42623307 0.27777778 0.15277778  0.41319444 0.29591049
## 1090   HiC_scaffold_79 43179786 0.48000000 0.49744898  0.43388430 0.48979592
## 1091   HiC_scaffold_79 43180099 0.45266272 0.48979592  0.47530864 0.47530864
## 1092   HiC_scaffold_79 43828078 0.43388430 0.49704142  0.35123967 0.45061224
## 1093   HiC_scaffold_79 43872513 0.37500000 0.45918367  0.48611111 0.45013850
## 1094   HiC_scaffold_79 44627215 0.07396450 0.20414201  0.16528926 0.14901388
## 1095   HiC_scaffold_79 50772769 0.48347107 0.48816568  0.46280992 0.48000000
## 1096   HiC_scaffold_79 55468575 0.44444444 0.50000000  0.46875000 0.48000000
## 1097   HiC_scaffold_79 55816114 0.50000000 0.48816568  0.43388430 0.48530612
## 1098   HiC_scaffold_79 59915784 0.47704082 0.46875000  0.29752066 0.43827611
## 1099   HiC_scaffold_79 60165298 0.49704142 0.45918367  0.50000000 0.49086925
## 1100   HiC_scaffold_79 60165305 0.29336735 0.45266272  0.49218750 0.42000000
## 1101   HiC_scaffold_79 69145556 0.32986111 0.24380165  0.20414201 0.27044753
## 1102   HiC_scaffold_79 70208305 0.49704142 0.50000000  0.49500000 0.49836735
## 1103   HiC_scaffold_79 73412292 0.44791667 0.27218935  0.34000000 0.35877551
## 1104   HiC_scaffold_79 73416663 0.44444444 0.47704082  0.50000000 0.48000000
## 1105   HiC_scaffold_79 73416688 0.39669421 0.42000000  0.47530864 0.43102041
## 1106   HiC_scaffold_79 76863102 0.48611111 0.39669421  0.37500000 0.43102041
## 1107   HiC_scaffold_79 81279649 0.23553719 0.49704142  0.39669421 0.42000000
## 1108   HiC_scaffold_79 81499990 0.00000000 0.31065089  0.21875000 0.19753086
## 1109   HiC_scaffold_79 82319836 0.49704142 0.43622449  0.50000000 0.49382716
## 1110   HiC_scaffold_79 82319849 0.48611111 0.37500000  0.27777778 0.40816327
## 1111   HiC_scaffold_79 83163707 0.43388430 0.47704082  0.49500000 0.47387755
## 1112   HiC_scaffold_79 86283512 0.49500000 0.49744898  0.41319444 0.48109568
## 1113   HiC_scaffold_79 87123758 0.00000000 0.26035503  0.16528926 0.15277778
## 1114   HiC_scaffold_79 88362889 0.48347107 0.47704082  0.46875000 0.47662527
## 1115   HiC_scaffold_79 88599431 0.48611111 0.45266272  0.48000000 0.50000000
## 1116   HiC_scaffold_79 89322919 0.48347107 0.47704082  0.48000000 0.48000000
## 1117   HiC_scaffold_79 89331918 0.49586777 0.26035503  0.50000000 0.47387755
## 1118   HiC_scaffold_79 91340958 0.48611111 0.49744898  0.50000000 0.49961420
## 1119    HiC_scaffold_8 13649836 0.26035503 0.37500000  0.18000000 0.28408163
## 1120    HiC_scaffold_8 13650752 0.23553719 0.15277778  0.32986111 0.24489796
## 1121    HiC_scaffold_8 23818233 0.46280992 0.29336735  0.37500000 0.38204082
## 1122    HiC_scaffold_8 24123972 0.48347107 0.32986111  0.50000000 0.46875000
## 1123    HiC_scaffold_8 24230791 0.41319444 0.42603550  0.50000000 0.46141975
## 1124    HiC_scaffold_8 24588423 0.46500000 0.41124260  0.21875000 0.37836735
## 1125    HiC_scaffold_8 25348483 0.48611111 0.41319444  0.46875000 0.46141975
## 1126    HiC_scaffold_8 25421933 0.37500000 0.48000000  0.48000000 0.45918367
## 1127    HiC_scaffold_8 25772942 0.48000000 0.49777778  0.48000000 0.49632653
## 1128    HiC_scaffold_8 26289589 0.43622449 0.44444444  0.47530864 0.45013850
## 1129    HiC_scaffold_8 27602740 0.40816327 0.42000000  0.45918367 0.42438272
## 1130    HiC_scaffold_8 28159063 0.41319444 0.29336735  0.34567901 0.35265306
## 1131    HiC_scaffold_8 30829320 0.48611111 0.35502959  0.37500000 0.42000000
## 1132    HiC_scaffold_8 31044084 0.44444444 0.42603550  0.37500000 0.42000000
## 1133    HiC_scaffold_8 31415507 0.48611111 0.35502959  0.40500000 0.42408163
## 1134    HiC_scaffold_8 32594682 0.46875000 0.42000000  0.49218750 0.49346939
## 1135   HiC_scaffold_80  3617847 0.35123967 0.37500000  0.18000000 0.32000000
## 1136   HiC_scaffold_80  5758183 0.48816568 0.47337278  0.45266272 0.47337278
## 1137   HiC_scaffold_80  6760006 0.50000000 0.45918367  0.44444444 0.50000000
## 1138   HiC_scaffold_80  6760037 0.49652778 0.43622449  0.49586777 0.48210373
## 1139   HiC_scaffold_80  7772622 0.37500000 0.00000000  0.07396450 0.15673469
## 1140   HiC_scaffold_80  7919533 0.56944444 0.63609467  0.55621302 0.59729917
## 1141   HiC_scaffold_80  8110052 0.48347107 0.29336735  0.49652778 0.47662527
## 1142   HiC_scaffold_80  8193366 0.15277778 0.21875000  0.32986111 0.23919753
## 1143   HiC_scaffold_80  8625784 0.00000000 0.24489796  0.19753086 0.15277778
## 1144   HiC_scaffold_80  8912846 0.49704142 0.50000000  0.50000000 0.49967127
## 1145   HiC_scaffold_80  9544102 0.42000000 0.49744898  0.46875000 0.47530864
## 1146   HiC_scaffold_80 10770701 0.45500000 0.45266272  0.49652778 0.47387755
## 1147   HiC_scaffold_80 11590146 0.47530864 0.35502959  0.42603550 0.42000000
## 1148   HiC_scaffold_80 16953653 0.29752066 0.48611111  0.49652778 0.45918367
## 1149   HiC_scaffold_80 18938832 0.37500000 0.48611111  0.49586777 0.48000000
## 1150   HiC_scaffold_80 19015946 0.15277778 0.07986111  0.39669421 0.22408163
## 1151   HiC_scaffold_80 19404001 0.41319444 0.19132653  0.09500000 0.25887346
## 1152   HiC_scaffold_80 25346708 0.49652778 0.49652778  0.41319444 0.49035494
## 1153   HiC_scaffold_80 37479851 0.50000000 0.42603550  0.32986111 0.44444444
## 1154   HiC_scaffold_80 37507516 0.46875000 0.49652778  0.46280992 0.48979592
## 1155   HiC_scaffold_81  1187192 0.40123457 0.40816327  0.48611111 0.44122449
## 1156   HiC_scaffold_81  2689826 0.48979592 0.44444444  0.37500000 0.45331790
## 1157   HiC_scaffold_81  2690751 0.47337278 0.49704142  0.50000000 0.49346939
## 1158   HiC_scaffold_81  6614123 0.49652778 0.50000000  0.42000000 0.49652778
## 1159   HiC_scaffold_81  7836855 0.48000000 0.35777778  0.39669421 0.45331790
## 1160   HiC_scaffold_81 10334868 0.49652778 0.42603550  0.48347107 0.47530864
## 1161   HiC_scaffold_81 10458752 0.49744898 0.49500000  0.41319444 0.49035494
## 1162   HiC_scaffold_81 17515538 0.24489796 0.27777778  0.23553719 0.25310446
## 1163   HiC_scaffold_81 40271282 0.48611111 0.37500000  0.39669421 0.43102041
## 1164   HiC_scaffold_81 40271294 0.50000000 0.42603550  0.46280992 0.47387755
## 1165   HiC_scaffold_81 41096427 0.42000000 0.42000000  0.42000000 0.42000000
## 1166   HiC_scaffold_81 41096444 0.39669421 0.42000000  0.44444444 0.42000000
## 1167   HiC_scaffold_81 43820595 0.49704142 0.32000000  0.42000000 0.45013850
## 1168   HiC_scaffold_81 43820732 0.48347107 0.43622449  0.32000000 0.43102041
## 1169   HiC_scaffold_81 43854278 0.49586777 0.44444444  0.45266272 0.46875000
## 1170   HiC_scaffold_81 44804862 0.49652778 0.49744898  0.50000000 0.50000000
## 1171   HiC_scaffold_81 45063428 0.37500000 0.46875000  0.39669421 0.42000000
## 1172   HiC_scaffold_81 45950590 0.37500000 0.47337278  0.37500000 0.42000000
## 1173   HiC_scaffold_81 46714752 0.32986111 0.46444444  0.40123457 0.41319444
## 1174   HiC_scaffold_81 46714759 0.48816568 0.49744898  0.47530864 0.49652778
## 1175   HiC_scaffold_81 47170397 0.32000000 0.07396450  0.00000000 0.13265306
## 1176   HiC_scaffold_81 47628201 0.47337278 0.35502959  0.43388430 0.42841490
## 1177   HiC_scaffold_81 48105216 0.47704082 0.48816568  0.48347107 0.49965374
## 1178   HiC_scaffold_81 48932070 0.46875000 0.45266272  0.39349112 0.44148199
## 1179   HiC_scaffold_81 54050146 0.29752066 0.07986111  0.00000000 0.13265306
## 1180   HiC_scaffold_82  5672063 0.50000000 0.50000000  0.48611111 0.49853908
## 1181   HiC_scaffold_82  8796823 0.50000000 0.46280992  0.48611111 0.49959184
## 1182   HiC_scaffold_82 13450959 0.49586777 0.48611111  0.48816568 0.49961420
## 1183   HiC_scaffold_82 26144442 0.50000000 0.41319444  0.31065089 0.43102041
## 1184   HiC_scaffold_82 26147011 0.48611111 0.33673469  0.09500000 0.36072531
## 1185   HiC_scaffold_82 28907834 0.49586777 0.49704142  0.49586777 0.49959184
## 1186   HiC_scaffold_82 34413793 0.50000000 0.48000000  0.49500000 0.49415632
## 1187   HiC_scaffold_82 34413800 0.49586777 0.50000000  0.45500000 0.49346939
## 1188   HiC_scaffold_82 36173035 0.49500000 0.39349112  0.48611111 0.48000000
## 1189   HiC_scaffold_82 40539273 0.45918367 0.48611111  0.47530864 0.47387755
## 1190   HiC_scaffold_82 41470256 0.31065089 0.35502959  0.23553719 0.30679328
## 1191   HiC_scaffold_83 23993605 0.40123457 0.35777778  0.48611111 0.42438272
## 1192   HiC_scaffold_83 35035961 0.44444444 0.45918367  0.35123967 0.42841490
## 1193   HiC_scaffold_83 43423618 0.46875000 0.49704142  0.26035503 0.44148199
## 1194   HiC_scaffold_83 46920654 0.47337278 0.49586777  0.41319444 0.48109568
## 1195   HiC_scaffold_83 46934197 0.32000000 0.45266272  0.40123457 0.39444850
## 1196   HiC_scaffold_84   356301 0.41319444 0.49744898  0.43388430 0.46347699
## 1197   HiC_scaffold_84  5761817 0.40816327 0.48347107  0.45500000 0.45061224
## 1198   HiC_scaffold_84  5769022 0.49586777 0.47337278  0.43388430 0.48530612
## 1199   HiC_scaffold_84  6288130 0.43622449 0.43622449  0.45500000 0.44148199
## 1200   HiC_scaffold_84  6288141 0.15277778 0.24489796  0.09500000 0.17554012
## 1201   HiC_scaffold_84  6288147 0.35123967 0.45918367  0.50000000 0.45918367
## 1202   HiC_scaffold_84  7069238 0.50000000 0.44444444  0.41319444 0.49959184
## 1203   HiC_scaffold_84  9131309 0.49382716 0.47704082  0.44444444 0.48530612
## 1204   HiC_scaffold_84 10148442 0.16528926 0.48979592  0.48000000 0.43102041
## 1205   HiC_scaffold_84 14659391 0.15277778 0.19132653  0.34567901 0.22408163
## 1206   HiC_scaffold_84 16302752 0.55785124 0.57397959  0.62809917 0.59104938
## 1207   HiC_scaffold_84 18463244 0.37500000 0.23111111  0.09500000 0.24489796
## 1208   HiC_scaffold_84 22909575 0.49704142 0.47337278  0.42000000 0.48611111
## 1209   HiC_scaffold_84 29275266 0.48979592 0.42000000  0.43388430 0.45918367
## 1210   HiC_scaffold_84 31184610 0.14201183 0.19132653  0.11718750 0.15673469
## 1211   HiC_scaffold_84 33093169 0.45918367 0.32986111  0.50000000 0.45061224
## 1212   HiC_scaffold_84 37675180 0.49586777 0.42603550  0.49586777 0.49632653
## 1213   HiC_scaffold_84 39501814 0.46280992 0.44444444  0.41319444 0.44148199
## 1214   HiC_scaffold_84 50169438 0.46875000 0.42603550  0.48000000 0.45918367
## 1215   HiC_scaffold_84 50169445 0.45266272 0.44444444  0.42000000 0.44122449
## 1216   HiC_scaffold_84 51231025 0.47530864 0.44444444  0.46875000 0.46141975
## 1217   HiC_scaffold_85  9792207 0.47530864 0.49744898  0.46875000 0.48530612
## 1218   HiC_scaffold_85 11784233 0.45500000 0.50000000  0.35123967 0.46693878
## 1219   HiC_scaffold_85 11911022 0.18000000 0.50000000  0.47337278 0.48979592
## 1220   HiC_scaffold_85 11911142 0.29752066 0.48979592  0.48000000 0.48000000
## 1221   HiC_scaffold_85 11913828 0.48816568 0.46875000  0.43388430 0.46875000
## 1222   HiC_scaffold_85 11913831 0.47530864 0.49111111  0.49704142 0.49671293
## 1223   HiC_scaffold_85 12353081 0.46875000 0.48979592  0.49586777 0.49415632
## 1224   HiC_scaffold_85 12414551 0.42975207 0.34948980  0.47520661 0.42091049
## 1225   HiC_scaffold_85 13043967 0.32000000 0.47337278  0.48611111 0.45061224
## 1226   HiC_scaffold_85 13221888 0.46280992 0.47704082  0.48000000 0.47387755
## 1227   HiC_scaffold_85 27008863 0.35502959 0.49704142  0.47530864 0.47387755
## 1228   HiC_scaffold_85 28992264 0.49744898 0.48979592  0.48347107 0.49967127
## 1229   HiC_scaffold_85 28992268 0.35502959 0.45918367  0.42000000 0.41782323
## 1230   HiC_scaffold_85 64310850 0.37500000 0.37500000  0.29752066 0.35265306
## 1231   HiC_scaffold_85 65135112 0.31404959 0.33777778  0.18000000 0.29012346
## 1232   HiC_scaffold_85 65563529 0.50000000 0.37500000  0.50000000 0.48000000
## 1233   HiC_scaffold_86  1949664 0.45266272 0.49111111  0.29752066 0.49178172
## 1234   HiC_scaffold_86  5340423 0.48979592 0.47337278  0.41319444 0.48816568
## 1235   HiC_scaffold_86  5483991 0.50000000 0.49704142  0.49586777 0.50000000
## 1236   HiC_scaffold_86  8928469 0.35123967 0.50000000  0.39669421 0.49961420
## 1237   HiC_scaffold_86 23727924 0.32000000 0.42603550  0.49652778 0.44122449
## 1238   HiC_scaffold_86 24825818 0.00000000 0.19132653  0.15277778 0.12924383
## 1239   HiC_scaffold_86 25333718 0.20414201 0.41319444  0.09500000 0.26489796
## 1240   HiC_scaffold_86 29668168 0.34375000 0.42975207  0.36982249 0.38078704
## 1241   HiC_scaffold_86 30914243 0.49586777 0.49704142  0.39669421 0.48000000
## 1242   HiC_scaffold_86 32040320 0.50000000 0.49744898  0.43388430 0.49035494
## 1243   HiC_scaffold_86 32040329 0.50000000 0.49744898  0.43388430 0.49035494
## 1244   HiC_scaffold_86 32125061 0.46875000 0.32986111  0.47337278 0.48210373
## 1245   HiC_scaffold_86 32144758 0.49652778 0.50000000  0.48000000 0.49632653
## 1246   HiC_scaffold_86 32153692 0.45500000 0.33673469  0.46280992 0.42000000
## 1247   HiC_scaffold_86 32534129 0.49500000 0.49744898  0.46875000 0.49652778
## 1248   HiC_scaffold_86 32605768 0.44444444 0.50000000  0.48816568 0.48530612
## 1249   HiC_scaffold_86 36355399 0.40816327 0.45500000  0.44444444 0.43479938
## 1250   HiC_scaffold_86 36357265 0.48347107 0.18000000  0.32986111 0.34729917
## 1251   HiC_scaffold_87  1253643 0.48000000 0.47704082  0.46875000 0.47530864
## 1252   HiC_scaffold_87  2137958 0.37500000 0.48816568  0.49586777 0.47783934
## 1253   HiC_scaffold_87  3980100 0.26035503 0.27777778  0.32000000 0.28358726
## 1254   HiC_scaffold_87  4395923 0.15277778 0.49704142  0.39349112 0.42209141
## 1255   HiC_scaffold_87  5489328 0.32986111 0.35502959  0.23553719 0.31327160
## 1256   HiC_scaffold_87  6300441 0.48816568 0.43622449  0.45500000 0.46347699
## 1257   HiC_scaffold_87 16306904 0.39669421 0.35777778  0.32000000 0.36072531
## 1258   HiC_scaffold_87 44780945 0.48347107 0.40816327  0.47337278 0.45810249
## 1259   HiC_scaffold_88  5584327 0.35123967 0.45918367  0.50000000 0.46141975
## 1260   HiC_scaffold_88  7104630 0.49704142 0.48816568  0.50000000 0.49959184
## 1261   HiC_scaffold_88  7104631 0.49704142 0.47337278  0.47530864 0.48530612
## 1262   HiC_scaffold_88  7104638 0.39349112 0.07396450  0.19753086 0.24489796
## 1263   HiC_scaffold_88  7104639 0.48816568 0.47337278  0.44444444 0.49346939
## 1264   HiC_scaffold_88  7104640 0.42603550 0.42603550  0.40123457 0.42000000
## 1265   HiC_scaffold_88  7479340 0.39669421 0.48979592  0.35123967 0.43479938
## 1266   HiC_scaffold_88  8773607 0.42000000 0.42603550  0.50000000 0.46875000
## 1267   HiC_scaffold_88  9883678 0.21875000 0.13265306  0.23553719 0.19284149
## 1268   HiC_scaffold_88 10878718 0.50000000 0.33673469  0.39669421 0.44148199
## 1269   HiC_scaffold_88 19365116 0.41319444 0.37500000  0.45500000 0.46875000
## 1270   HiC_scaffold_88 20477349 0.48347107 0.48816568  0.48347107 0.49836735
## 1271   HiC_scaffold_88 20557885 0.48000000 0.48000000  0.45266272 0.49134349
## 1272   HiC_scaffold_89   675045 0.33673469 0.46875000  0.48000000 0.43479938
## 1273   HiC_scaffold_89  2815845 0.24380165 0.47041420  0.37603306 0.37714286
## 1274   HiC_scaffold_89  2843940 0.39349112 0.48000000  0.45266272 0.44973230
## 1275   HiC_scaffold_89  3018830 0.21875000 0.13265306  0.25500000 0.19753086
## 1276   HiC_scaffold_89 13745506 0.46875000 0.45918367  0.37500000 0.44148199
## 1277   HiC_scaffold_89 30006907 0.49500000 0.49704142  0.45266272 0.48611111
## 1278   HiC_scaffold_89 36509388 0.49500000 0.48979592  0.46280992 0.50000000
## 1279   HiC_scaffold_89 38703735 0.45918367 0.49586777  0.32000000 0.46693878
## 1280   HiC_scaffold_89 38764895 0.37500000 0.15277778  0.16528926 0.24489796
## 1281   HiC_scaffold_89 42052609 0.35123967 0.50000000  0.32000000 0.44444444
## 1282   HiC_scaffold_89 42054991 0.35502959 0.45266272  0.37500000 0.47530864
## 1283   HiC_scaffold_89 44306958 0.43388430 0.43622449  0.49500000 0.47387755
## 1284   HiC_scaffold_89 44338206 0.39669421 0.46444444  0.34567901 0.42000000
## 1285   HiC_scaffold_89 45298973 0.27777778 0.18000000  0.35123967 0.26592798
## 1286    HiC_scaffold_9  3529921 0.27777778 0.46875000  0.39669421 0.45918367
## 1287    HiC_scaffold_9  5660454 0.49586777 0.49744898  0.39669421 0.48109568
## 1288    HiC_scaffold_9  5660461 0.23553719 0.06887755  0.09500000 0.13265306
## 1289    HiC_scaffold_9  5854070 0.35123967 0.33673469  0.35123967 0.34567901
## 1290    HiC_scaffold_9  6142415 0.47337278 0.49586777  0.48347107 0.50000000
## 1291    HiC_scaffold_9  6142436 0.47337278 0.49586777  0.50000000 0.49836735
## 1292    HiC_scaffold_9  6143781 0.49652778 0.49652778  0.49586777 0.49959184
## 1293    HiC_scaffold_9  6654825 0.45266272 0.49744898  0.48816568 0.48468750
## 1294    HiC_scaffold_9  7094545 0.16528926 0.35502959  0.35123967 0.30244898
## 1295    HiC_scaffold_9  7100208 0.50000000 0.48816568  0.49704142 0.49965374
## 1296    HiC_scaffold_9  7109988 0.45500000 0.39111111  0.48347107 0.48611111
## 1297    HiC_scaffold_9  7111922 0.49744898 0.48611111  0.48347107 0.49086925
## 1298    HiC_scaffold_9  8235781 0.23553719 0.43388430  0.45266272 0.39551020
## 1299    HiC_scaffold_9  8279558 0.41319444 0.32986111  0.23553719 0.33673469
## 1300    HiC_scaffold_9 15679481 0.40816327 0.49652778  0.41319444 0.45013850
## 1301    HiC_scaffold_9 18082611 0.32840237 0.07396450  0.18500000 0.20370370
## 1302    HiC_scaffold_9 18090830 0.48979592 0.49704142  0.29752066 0.47783934
## 1303    HiC_scaffold_9 30240531 0.29336735 0.16528926  0.18000000 0.22408163
## 1304   HiC_scaffold_90 10418696 0.50000000 0.33673469  0.29752066 0.42209141
## 1305   HiC_scaffold_90 11470224 0.48000000 0.40816327  0.44444444 0.47530864
## 1306   HiC_scaffold_90 13593319 0.46875000 0.45918367  0.46875000 0.46537396
## 1307   HiC_scaffold_90 16260161 0.46875000 0.45266272  0.16528926 0.46141975
## 1308   HiC_scaffold_90 22325499 0.46875000 0.48979592  0.50000000 0.49959184
## 1309   HiC_scaffold_90 23574204 0.46280992 0.48979592  0.29752066 0.44444444
## 1310   HiC_scaffold_90 23609908 0.49586777 0.50000000  0.48816568 0.49632653
## 1311   HiC_scaffold_90 23623078 0.42000000 0.47337278  0.42603550 0.44444444
## 1312   HiC_scaffold_90 23626883 0.41319444 0.42603550  0.50000000 0.45918367
## 1313   HiC_scaffold_90 23812663 0.06887755 0.00000000  0.29752066 0.12924383
## 1314   HiC_scaffold_90 25939283 0.35502959 0.47704082  0.49500000 0.47041636
## 1315   HiC_scaffold_90 25985714 0.45266272 0.44444444  0.39669421 0.43479938
## 1316   HiC_scaffold_90 30751272 0.49652778 0.44444444  0.35123967 0.45061224
## 1317   HiC_scaffold_90 31232025 0.00000000 0.37500000  0.15277778 0.22408163
## 1318   HiC_scaffold_90 31245699 0.43388430 0.45918367  0.42000000 0.49346939
## 1319   HiC_scaffold_90 31527975 0.42000000 0.45918367  0.43388430 0.44122449
## 1320   HiC_scaffold_90 31546172 0.48347107 0.43622449  0.25500000 0.42000000
## 1321   HiC_scaffold_90 38511996 0.40816327 0.50000000  0.48347107 0.49415632
## 1322   HiC_scaffold_90 38511999 0.49744898 0.49652778  0.32000000 0.48611111
## 1323   HiC_scaffold_90 38517279 0.50000000 0.49652778  0.50000000 0.49959184
## 1324   HiC_scaffold_90 40624104 0.48816568 0.46875000  0.35123967 0.45331790
## 1325   HiC_scaffold_91  5644765 0.48000000 0.47704082  0.43388430 0.49959184
## 1326   HiC_scaffold_91  5867214 0.48611111 0.48611111  0.46280992 0.49959184
## 1327   HiC_scaffold_91  5867226 0.49704142 0.48611111  0.44444444 0.49963477
## 1328   HiC_scaffold_91  7704263 0.42000000 0.48816568  0.50000000 0.48530612
## 1329   HiC_scaffold_91  7871360 0.47337278 0.39669421  0.49586777 0.48000000
## 1330   HiC_scaffold_91  8538014 0.31065089 0.00000000  0.07986111 0.15277778
## 1331   HiC_scaffold_91 13230485 0.49586777 0.45266272  0.48347107 0.48000000
## 1332   HiC_scaffold_91 28696118 0.42000000 0.50000000  0.39349112 0.49836735
## 1333   HiC_scaffold_91 28696625 0.48000000 0.47704082  0.49586777 0.49346939
## 1334   HiC_scaffold_91 42177482 0.49652778 0.48816568  0.42000000 0.48000000
## 1335   HiC_scaffold_91 46813640 0.50000000 0.60069444  0.54437870 0.55259313
## 1336   HiC_scaffold_92 23783035 0.20414201 0.47041420  0.14497041 0.28961210
## 1337   HiC_scaffold_92 23783036 0.20414201 0.47041420  0.14497041 0.28961210
## 1338   HiC_scaffold_92 24712793 0.48347107 0.35502959  0.39669421 0.42000000
## 1339   HiC_scaffold_92 28698258 0.41319444 0.48347107  0.44444444 0.48000000
## 1340   HiC_scaffold_92 40691582 0.48611111 0.29752066  0.15277778 0.33959184
## 1341   HiC_scaffold_92 43967712 0.48347107 0.44444444  0.50000000 0.49836735
## 1342   HiC_scaffold_92 47147572 0.49500000 0.49777778  0.42000000 0.48530612
## 1343   HiC_scaffold_92 49042714 0.46280992 0.40816327  0.48347107 0.45331790
## 1344   HiC_scaffold_92 49042715 0.46280992 0.40816327  0.48347107 0.45331790
## 1345   HiC_scaffold_92 53634002 0.49586777 0.26035503  0.29752066 0.38204082
## 1346   HiC_scaffold_92 58211868 0.50000000 0.50000000  0.47530864 0.49836735
## 1347   HiC_scaffold_92 60114155 0.39349112 0.48347107  0.48347107 0.45918367
## 1348   HiC_scaffold_92 63603483 0.32000000 0.47704082  0.42603550 0.42841490
## 1349   HiC_scaffold_92 64797225 0.32000000 0.24489796  0.16528926 0.25469388
## 1350   HiC_scaffold_92 68367476 0.40277778 0.33777778  0.15625000 0.31065089
## 1351   HiC_scaffold_93  1912167 0.48816568 0.45266272  0.34567901 0.45061224
## 1352   HiC_scaffold_93  2485978 0.48611111 0.32000000  0.42968750 0.42000000
## 1353   HiC_scaffold_93  3227638 0.45500000 0.24489796  0.48611111 0.45331790
## 1354   HiC_scaffold_93  3227641 0.39669421 0.42603550  0.39669421 0.48979592
## 1355   HiC_scaffold_93 13971208 0.48347107 0.45918367  0.41319444 0.45580716
## 1356   HiC_scaffold_93 13987080 0.44444444 0.44444444  0.44444444 0.44444444
## 1357   HiC_scaffold_93 21125468 0.46280992 0.47704082  0.48000000 0.47387755
## 1358   HiC_scaffold_93 21845293 0.39669421 0.35502959  0.49586777 0.45061224
## 1359   HiC_scaffold_93 21845310 0.48611111 0.35502959  0.43388430 0.43479938
## 1360   HiC_scaffold_93 21846342 0.32000000 0.42603550  0.48611111 0.43102041
## 1361   HiC_scaffold_93 21846356 0.50000000 0.29336735  0.48347107 0.45061224
## 1362   HiC_scaffold_93 22589723 0.50000000 0.47337278  0.50000000 0.49652778
## 1363   HiC_scaffold_93 22619278 0.32000000 0.26035503  0.15277778 0.24489796
## 1364   HiC_scaffold_93 22631258 0.49704142 0.33673469  0.39669421 0.43213296
## 1365   HiC_scaffold_93 22631266 0.49704142 0.33673469  0.43388430 0.44148199
## 1366   HiC_scaffold_94  3110102 0.49652778 0.48611111  0.32986111 0.49382716
## 1367   HiC_scaffold_94  3205919 0.50000000 0.42603550  0.48000000 0.48000000
## 1368   HiC_scaffold_94  9023846 0.34567901 0.44444444  0.48347107 0.44122449
## 1369   HiC_scaffold_94 11572820 0.49652778 0.33673469  0.32000000 0.43479938
## 1370   HiC_scaffold_94 12368532 0.47704082 0.39111111  0.49652778 0.47590720
## 1371   HiC_scaffold_94 42179418 0.48611111 0.48816568  0.49652778 0.49963477
## 1372   HiC_scaffold_94 42179519 0.41319444 0.47337278  0.48347107 0.46141975
## 1373   HiC_scaffold_94 51646206 0.26500000 0.27218935  0.29166667 0.27714286
## 1374   HiC_scaffold_94 52781289 0.46875000 0.50000000  0.46280992 0.48685172
## 1375   HiC_scaffold_94 53790035 0.50000000 0.40816327  0.49586777 0.48000000
## 1376   HiC_scaffold_94 53792738 0.48347107 0.46875000  0.49652778 0.49346939
## 1377   HiC_scaffold_94 56768905 0.39349112 0.39111111  0.47337278 0.42385485
## 1378  HiC_scaffold_946    81276 0.50000000 0.41319444  0.44444444 0.46875000
## 1379   HiC_scaffold_95  3189690 0.34567901 0.47337278  0.35502959 0.40816327
## 1380   HiC_scaffold_95  4397298 0.35123967 0.19132653  0.29752066 0.27777778
## 1381   HiC_scaffold_95  9469157 0.50000000 0.50000000  0.49500000 0.49959184
## 1382   HiC_scaffold_95 10641411 0.49586777 0.49652778  0.50000000 0.49836735
## 1383   HiC_scaffold_95 10949821 0.44444444 0.49744898  0.42603550 0.49961420
## 1384   HiC_scaffold_95 12993394 0.48347107 0.48979592  0.45266272 0.50000000
## 1385   HiC_scaffold_95 15515793 0.32000000 0.48816568  0.49652778 0.48979592
## 1386   HiC_scaffold_95 15608785 0.45266272 0.48979592  0.45500000 0.49086925
## 1387   HiC_scaffold_95 15609137 0.43388430 0.50000000  0.39349112 0.46347699
## 1388   HiC_scaffold_95 16295316 0.16528926 0.42603550  0.50000000 0.42000000
## 1389   HiC_scaffold_95 22656165 0.27777778 0.48000000  0.46280992 0.44122449
## 1390   HiC_scaffold_95 25885727 0.50000000 0.48979592  0.50000000 0.49853908
## 1391   HiC_scaffold_96 10460019 0.21875000 0.49704142  0.45500000 0.48000000
## 1392   HiC_scaffold_96 27155785 0.50000000 0.37500000  0.48816568 0.47662527
## 1393   HiC_scaffold_96 37939434 0.35502959 0.50000000  0.42000000 0.45580716
## 1394   HiC_scaffold_96 51115048 0.49744898 0.31065089  0.40123457 0.45331790
## 1395   HiC_scaffold_96 51116511 0.35502959 0.39349112  0.42000000 0.38850309
## 1396   HiC_scaffold_96 51915040 0.47337278 0.46875000  0.48000000 0.49836735
## 1397   HiC_scaffold_96 52681287 0.48611111 0.31065089  0.43388430 0.42438272
## 1398   HiC_scaffold_96 53276519 0.31065089 0.49586777  0.46875000 0.44444444
## 1399   HiC_scaffold_97  1736926 0.50000000 0.43622449  0.46875000 0.47662527
## 1400   HiC_scaffold_97  1736994 0.49704142 0.48816568  0.48611111 0.49134349
## 1401   HiC_scaffold_97  3863543 0.27777778 0.14201183  0.48000000 0.32000000
## 1402   HiC_scaffold_97  4200445 0.41319444 0.48611111  0.35123967 0.43102041
## 1403   HiC_scaffold_97  4799162 0.37500000 0.45918367  0.43388430 0.43102041
## 1404   HiC_scaffold_97  5027892 0.49500000 0.40816327  0.37500000 0.45331790
## 1405   HiC_scaffold_97  8007933 0.50000000 0.47704082  0.49500000 0.49836735
## 1406   HiC_scaffold_97 17997210 0.39669421 0.40816327  0.48000000 0.43102041
## 1407   HiC_scaffold_97 18604647 0.18000000 0.00000000  0.16528926 0.10775510
## 1408   HiC_scaffold_97 20239636 0.26035503 0.49586777  0.43388430 0.42000000
## 1409   HiC_scaffold_98 15154096 0.21875000 0.49744898  0.47530864 0.45918367
## 1410   HiC_scaffold_98 22342667 0.39349112 0.49586777  0.44444444 0.49652778
## 1411   HiC_scaffold_98 22634293 0.15277778 0.15277778  0.23553719 0.18000000
## 1412   HiC_scaffold_98 22634294 0.15277778 0.15277778  0.23553719 0.18000000
## 1413   HiC_scaffold_98 22721138 0.21875000 0.07986111  0.35123967 0.22408163
## 1414   HiC_scaffold_98 22869378 0.45500000 0.43622449  0.44444444 0.44444444
## 1415   HiC_scaffold_98 24108405 0.35123967 0.49744898  0.43388430 0.45331790
## 1416   HiC_scaffold_98 27359592 0.49500000 0.50000000  0.35123967 0.48000000
## 1417   HiC_scaffold_98 28549834 0.49652778 0.48347107  0.48611111 0.49959184
## 1418   HiC_scaffold_98 28867520 0.45500000 0.37500000  0.48347107 0.44122449
## 1419   HiC_scaffold_98 28867524 0.57438017 0.64285714  0.57438017 0.60648148
## 1420   HiC_scaffold_98 29431717 0.48347107 0.43622449  0.42000000 0.45061224
## 1421   HiC_scaffold_98 29675109 0.43388430 0.48611111  0.50000000 0.48530612
## 1422   HiC_scaffold_99  1163244 0.44444444 0.44444444  0.47530864 0.45331790
## 1423   HiC_scaffold_99  1451611 0.29752066 0.45918367  0.48347107 0.43479938
## 1424   HiC_scaffold_99  2021961 0.00000000 0.35714286  0.23553719 0.21572022
## 1425   HiC_scaffold_99  5134392 0.44444444 0.27777778  0.50000000 0.44122449
## 1426   HiC_scaffold_99  5239109 0.39669421 0.35777778  0.50000000 0.43479938
## 1427   HiC_scaffold_99  6917738 0.49586777 0.14201183  0.29752066 0.38204082
## 1428   HiC_scaffold_99 11221970 0.44444444 0.37500000  0.47337278 0.43479938
## 1429   HiC_scaffold_99 25982503 0.35502959 0.20414201  0.39669421 0.32322863
##      n_Ambient n_Low n_Moderate          Gst     Htmax    Gstmax     Gprimest
## 1           26    26         22 8.059374e-03 0.8228634 0.4254405 1.894360e-02
## 2           22    24         24 1.552189e-02 0.8175510 0.4470605 3.471988e-02
## 3           20    30         24 1.040592e-02 0.7768444 0.5491694 1.894846e-02
## 4           26    28         26 1.239786e-02 0.8112500 0.4658731 2.661209e-02
## 5           26    24         26 2.897787e-02 0.7551939 0.6424893 4.510249e-02
## 6           20    30         22 6.413813e-02 0.8101852 0.4509610 1.422254e-01
## 7           22    26         22 2.597403e-02 0.8220408 0.4312539 6.022907e-02
## 8           28    24         18 1.541782e-04 0.8077551 0.4538487 3.397128e-04
## 9           22    28         20 6.167763e-03 0.8277551 0.4040927 1.526324e-02
## 10          26    22         22 8.636855e-02 0.8167347 0.4479858 1.927931e-01
## 11          28    26         16 7.334087e-02 0.8114286 0.4294614 1.707741e-01
## 12          28    26         16 7.334087e-02 0.8114286 0.4294614 1.707741e-01
## 13          24    30         20 8.496732e-03 0.8031410 0.4711081 1.803563e-02
## 14          20    28         26 6.529418e-03 0.8195763 0.4297727 1.519272e-02
## 15          26    26         22 9.883450e-03 0.8108108 0.4648019 2.126379e-02
## 16          24    28         18 7.517818e-02 0.8138776 0.4360164 1.724205e-01
## 17          26    28         26 5.263351e-02 0.8434375 0.3692414 1.425450e-01
## 18          26    28         26 3.923469e-02 0.8265625 0.4191820 9.359822e-02
## 19          26    26         20 4.807692e-03 0.8279321 0.4064091 1.182969e-02
## 20          24    26         22 4.902790e-02 0.7233796 0.7692308 6.373626e-02
## 21          26    28         20 1.206453e-02 0.8170197 0.4395663 2.744644e-02
## 22          22    26         24 1.566995e-02 0.8179012 0.4446893 3.523797e-02
## 23          24    28         20 8.303923e-02 0.8136574 0.4473887 1.856087e-01
## 24          26    28         22 1.519787e-02 0.8254848 0.4183719 3.632622e-02
## 25          24    28         22 2.318641e-02 0.8224982 0.4274450 5.424420e-02
## 26          24    30         18 2.553191e-03 0.8090278 0.4411063 5.788154e-03
## 27          24    28         20 1.096860e-02 0.8279321 0.4045533 2.711286e-02
## 28          22    28         20 1.284342e-02 0.8273469 0.4053684 3.168333e-02
## 29          22    26         22 2.629428e-02 0.7922449 0.5149029 5.106649e-02
## 30          22    28         20 5.612050e-02 0.8175510 0.4397041 1.276324e-01
## 31          22    24         24 2.046955e-02 0.8208163 0.4344929 4.711137e-02
## 32          22    30         22 4.883619e-03 0.7016070 0.8212831 5.946328e-03
## 33          28    30         20 3.075397e-03 0.8021039 0.4704859 6.536639e-03
## 34          28    30         20 3.075397e-03 0.8021039 0.4704859 6.536639e-03
## 35          24    26         20 7.002590e-02 0.8224490 0.4106318 1.705321e-01
## 36          24    26         20 6.717949e-03 0.8159184 0.4409993 1.523347e-02
## 37          22    26         22 3.406118e-02 0.8020408 0.4941725 6.892568e-02
## 38          20    26         24 1.098283e-01 0.7946939 0.5057650 2.171528e-01
## 39          24    24         22 2.859868e-02 0.7946939 0.5165445 5.536538e-02
## 40          24    28         18 8.585158e-02 0.7914286 0.4903587 1.750791e-01
## 41          18    26         26 8.533839e-03 0.7473469 0.6485737 1.315786e-02
## 42          20    28         24 4.288312e-02 0.7955247 0.4894139 8.762137e-02
## 43          24    22         24 4.591557e-03 0.8310204 0.4054928 1.132340e-02
## 44          26    24         20 9.471938e-02 0.8048980 0.4748271 1.994819e-01
## 45          18    30         22 8.619529e-04 0.8118367 0.4348767 1.982063e-03
## 46          20    26         24 2.042777e-02 0.8273469 0.4099370 4.983149e-02
## 47          26    26         22 1.063334e-01 0.8038714 0.4847511 2.193567e-01
## 48          28    22         22 1.826299e-03 0.8117284 0.4534714 4.027373e-03
## 49          28    22         20 2.597403e-02 0.7979592 0.4873285 5.329880e-02
## 50          20    26         26 5.931126e-04 0.8275463 0.4078107 1.454382e-03
## 51          24    26         20 7.806430e-03 0.8081633 0.4708301 1.658014e-02
## 52          18    28         24 2.147896e-02 0.7179592 0.7546744 2.846123e-02
## 53          26    22         26 7.943627e-02 0.8119065 0.4595881 1.728423e-01
## 54          22    28         24 4.468151e-02 0.8235939 0.4217252 1.059494e-01
## 55          28    28         22 2.614053e-02 0.8267587 0.4110377 6.359642e-02
## 56          30    24         20 1.395349e-01 0.7980278 0.4750572 2.937223e-01
## 57          24    24         22 1.552189e-02 0.8175510 0.4470605 3.471988e-02
## 58          22    30         24 4.446626e-02 0.8161357 0.4368959 1.017777e-01
## 59          18    28         24 3.790509e-02 0.7714286 0.5601852 6.766529e-02
## 60          22    24         24 2.256595e-02 0.8289796 0.4123846 5.472066e-02
## 61          20    28         22 6.613636e-02 0.7428571 0.6921329 9.555443e-02
## 62          26    26         24 1.140039e-02 0.8144044 0.4535802 2.513424e-02
## 63          24    24         22 1.470960e-01 0.8048980 0.4809915 3.058182e-01
## 64          24    30         22 3.445254e-02 0.8244460 0.4180762 8.240732e-02
## 65          20    28         22 7.769697e-02 0.8061224 0.4746375 1.636975e-01
## 66          26    28         22 8.274784e-02 0.8022853 0.4952540 1.670816e-01
## 67          26    24         20 1.382604e-03 0.8310204 0.3996524 3.459517e-03
## 68          20    26         26 1.301775e-02 0.8275463 0.4078107 3.192107e-02
## 69          26    26         22 3.273893e-02 0.8056976 0.4738380 6.909308e-02
## 70          24    26         22 7.651963e-02 0.7870370 0.5292061 1.445933e-01
## 71          28    28         20 1.309066e-01 0.7887812 0.5238681 2.498847e-01
## 72          22    24         24 9.377104e-02 0.8061224 0.4837936 1.938245e-01
## 73          24    26         22 4.028807e-03 0.7087191 0.8183722 4.922952e-03
## 74          24    26         20 1.844613e-01 0.7195918 0.7460404 2.472537e-01
## 75          18    28         26 9.668110e-02 0.6975309 0.8021492 1.205276e-01
## 76          22    26         24 5.528846e-03 0.8294753 0.4079428 1.355300e-02
## 77          26    26         20 6.873251e-02 0.7966821 0.4917489 1.397715e-01
## 78          22    26         22 1.782531e-03 0.8318367 0.4004818 4.450967e-03
## 79          24    24         26 1.523332e-01 0.8009496 0.4955745 3.073872e-01
## 80          24    24         24 1.702128e-03 0.8175154 0.4464370 3.812694e-03
## 81          26    22         26 1.998002e-03 0.8290723 0.4091125 4.883747e-03
## 82          24    28         18 1.504687e-01 0.7979592 0.4746377 3.170180e-01
## 83          24    26         20 2.179487e-02 0.8159184 0.4494844 4.848861e-02
## 84          26    28         22 4.384869e-02 0.8009003 0.4960880 8.838893e-02
## 85          22    26         22 2.097902e-02 0.8285714 0.4096938 5.120659e-02
## 86          20    26         24 9.458241e-03 0.8093878 0.4600224 2.056039e-02
## 87          24    24         22 1.425752e-02 0.8195918 0.4384017 3.252160e-02
## 88          28    22         20 5.916084e-02 0.6967347 0.8208713 7.207079e-02
## 89          26    22         22 9.384242e-03 0.8216327 0.4286613 2.189198e-02
## 90          20    28         22 8.818839e-03 0.7946939 0.5067003 1.740445e-02
## 91          26    28         16 4.624791e-03 0.8073469 0.4444417 1.040584e-02
## 92          24    28         18 2.146465e-02 0.6955102 0.8483959 2.530027e-02
## 93          24    24         22 1.076389e-02 0.8277551 0.4146532 2.595878e-02
## 94          28    24         20 4.208391e-03 0.8082562 0.4643164 9.063629e-03
## 95          28    24         18 1.493056e-02 0.8212245 0.4124834 3.619674e-02
## 96          24    26         22 3.029243e-02 0.8024691 0.4871739 6.217992e-02
## 97          24    24         22 1.312720e-02 0.8146939 0.4541545 2.890469e-02
## 98          24    26         22 2.615093e-02 0.8109568 0.4662825 5.608388e-02
## 99          22    26         24 6.342022e-02 0.8001543 0.5032605 1.260187e-01
## 100         22    26         22 7.489364e-02 0.8106122 0.4671089 1.603344e-01
## 101         28    24         20 2.820037e-02 0.8179012 0.4352561 6.479030e-02
## 102         24    26         22 7.752741e-02 0.8097994 0.4660294 1.663573e-01
## 103         20    28         22 5.369607e-02 0.7995918 0.4778180 1.123777e-01
## 104         24    28         18 1.862650e-03 0.7995918 0.4757104 3.915512e-03
## 105         24    24         22 5.688476e-02 0.8061224 0.4837936 1.175806e-01
## 106         20    30         24 4.817150e-02 0.7498174 0.6323429 7.617940e-02
## 107         22    28         20 1.870707e-02 0.8142857 0.4466393 4.188407e-02
## 108         26    22         22 7.820137e-03 0.8289796 0.4093819 1.910230e-02
## 109         24    22         24 5.631114e-02 0.7971429 0.5090692 1.106159e-01
## 110         24    22         24 3.088777e-02 0.7824490 0.5546229 5.569147e-02
## 111         30    22         18 2.743784e-02 0.7714286 0.5718668 4.797942e-02
## 112         28    22         22 1.802247e-01 0.7920525 0.5020654 3.589667e-01
## 113         28    24         20 6.488294e-02 0.8047840 0.4638543 1.398779e-01
## 114         18    26         26 2.378917e-02 0.7436735 0.6785255 3.506010e-02
## 115         24    22         24 1.418586e-02 0.8293878 0.4100640 3.459425e-02
## 116         16    30         24 2.348856e-02 0.8195918 0.4047560 5.803142e-02
## 117         20    26         26 7.863248e-02 0.8186728 0.4372798 1.798219e-01
## 118         24    24         24 5.663189e-02 0.7480710 0.6735431 8.408058e-02
## 119         24    22         26 9.324009e-03 0.8132716 0.4586059 2.033120e-02
## 120         22    24         26 3.755394e-02 0.8121142 0.4627676 8.115074e-02
## 121         24    28         18 5.512747e-02 0.8106122 0.4443046 1.240759e-01
## 122         24    30         16 2.358974e-02 0.6975510 0.8143164 2.896877e-02
## 123         20    28         22 1.237170e-02 0.7248980 0.7241759 1.708383e-02
## 124         22    28         24 5.307655e-02 0.8075237 0.4787852 1.108567e-01
## 125         22    28         20 8.047251e-02 0.8142857 0.4519708 1.780480e-01
## 126         30    26         20 6.864316e-03 0.8157895 0.4334574 1.583620e-02
## 127         24    28         20 5.614772e-02 0.8202160 0.4264077 1.316761e-01
## 128         22    28         22 6.493506e-03 0.7299383 0.7311441 8.881295e-03
## 129         18    30         24 9.890765e-02 0.7658179 0.5428715 1.821935e-01
## 130         26    24         24 3.050434e-02 0.7370343 0.7093435 4.300363e-02
## 131         24    26         20 8.338141e-02 0.8138776 0.4483740 1.859640e-01
## 132         22    26         22 3.929964e-02 0.8216327 0.4325520 9.085529e-02
## 133         26    30         22 2.131661e-02 0.7902696 0.5277568 4.039098e-02
## 134         30    26         18 1.300899e-02 0.8243243 0.4030825 3.227375e-02
## 135         24    30         20 2.703704e-02 0.8162893 0.4318941 6.260108e-02
## 136         26    26         22 5.247167e-02 0.8170197 0.4472398 1.173233e-01
## 137         24    28         22 3.248345e-02 0.8254200 0.4177777 7.775296e-02
## 138         24    28         22 3.561621e-02 0.8119065 0.4494813 7.923846e-02
## 139         20    28         24 6.603954e-02 0.7754630 0.5836674 1.131458e-01
## 140         24    24         22 1.437848e-02 0.8044898 0.4854366 2.961969e-02
## 141         26    22         24 3.988199e-03 0.8132716 0.4556899 8.752002e-03
## 142         18    30         22 1.182557e-02 0.8200000 0.4151621 2.848423e-02
## 143         20    28         22 3.180493e-02 0.7987755 0.4909184 6.478659e-02
## 144         24    28         22 1.635708e-01 0.7987582 0.5008962 3.265564e-01
## 145         22    28         20 1.578409e-01 0.7967347 0.4822792 3.272812e-01
## 146         16    30         26 4.997611e-02 0.7997685 0.4835133 1.033604e-01
## 147         18    26         26 6.165534e-02 0.7853061 0.5435080 1.134396e-01
## 148         18    30         22 2.818887e-02 0.8093878 0.4310274 6.539925e-02
## 149         22    28         20 9.396288e-03 0.8200000 0.4275307 2.197805e-02
## 150         18    28         24 1.151344e-02 0.7473469 0.6496298 1.772308e-02
## 151         20    30         20 1.089325e-03 0.8261224 0.3959157 2.751406e-03
## 152         22    22         26 1.274205e-01 0.8102041 0.4632647 2.750490e-01
## 153         26    24         24 7.845887e-02 0.8173850 0.4465812 1.756878e-01
## 154         26    22         22 5.164067e-03 0.7089796 0.8138620 6.345138e-03
## 155         22    28         20 2.496368e-02 0.8191837 0.4223626 5.910485e-02
## 156         24    26         20 5.892458e-02 0.7983673 0.4919347 1.197813e-01
## 157         24    26         20 7.799046e-02 0.7987755 0.4907040 1.589359e-01
## 158         28    28         22 8.926734e-02 0.7965155 0.5019724 1.778331e-01
## 159         22    28         22 8.084416e-02 0.7422840 0.6560332 1.232318e-01
## 160         24    28         24 2.308966e-02 0.8140582 0.4502542 5.128139e-02
## 161         24    28         18 1.077836e-02 0.7102041 0.7816890 1.378855e-02
## 162         26    24         22 4.126737e-03 0.8213735 0.4316646 9.560055e-03
## 163         26    26         22 1.829965e-02 0.8287071 0.4094222 4.469628e-02
## 164         22    24         24 5.681818e-03 0.7469388 0.6739940 8.430072e-03
## 165         26    24         20 2.074572e-02 0.8232653 0.4227400 4.907443e-02
## 166         20    28         22 1.073416e-02 0.8028571 0.4824837 2.224772e-02
## 167         22    24         24 1.132305e-01 0.8081633 0.4733127 2.392298e-01
## 168         20    28         24 3.781818e-02 0.7970679 0.4877057 7.754304e-02
## 169         24    26         22 2.831972e-03 0.8260031 0.4192113 6.755475e-03
## 170         24    24         22 6.162165e-03 0.8155102 0.4508524 1.366781e-02
## 171         26    22         22 2.946387e-02 0.8151020 0.4532533 6.500531e-02
## 172         18    26         26 1.975402e-02 0.8248980 0.4077782 4.844305e-02
## 173         26    22         24 1.540701e-02 0.7685185 0.5986498 2.573626e-02
## 174         20    28         22 4.076274e-02 0.8032653 0.4852873 8.399713e-02
## 175         28    20         22 7.282124e-02 0.8110204 0.4582514 1.589111e-01
## 176         24    24         24 8.125000e-02 0.8179012 0.4452830 1.824682e-01
## 177         22    30         24 1.303375e-02 0.8234072 0.4156230 3.135954e-02
## 178         28    22         22 1.668969e-03 0.8152006 0.4448467 3.751785e-03
## 179         26    28         20 1.005676e-02 0.8279766 0.4039380 2.489678e-02
## 180         26    22         24 3.330003e-03 0.8271605 0.4142704 8.038236e-03
## 181         24    24         22 1.037326e-01 0.7142857 0.8033333 1.291278e-01
## 182         22    24         24 1.024511e-02 0.8146939 0.4525604 2.263811e-02
## 183         28    26         18 2.565234e-02 0.8229167 0.4084481 6.280441e-02
## 184         22    28         22 5.721551e-03 0.8290895 0.4045433 1.414323e-02
## 185         28    26         16 8.253205e-03 0.7322449 0.6683121 1.234933e-02
## 186         28    22         26 4.187059e-02 0.8227147 0.4241545 9.871542e-02
## 187         26    26         20 1.082621e-02 0.7885802 0.5296101 2.044185e-02
## 188         24    28         20 1.841046e-02 0.7739198 0.5830936 3.157377e-02
## 189         24    26         20 2.787366e-02 0.7869388 0.5280548 5.278554e-02
## 190         24    28         18 3.790509e-02 0.7714286 0.5601852 6.766529e-02
## 191         22    30         26 2.438017e-02 0.7462196 0.6596075 3.696162e-02
## 192         26    24         22 1.157351e-01 0.8059414 0.4721502 2.451235e-01
## 193         24    28         22 5.904942e-02 0.7991234 0.4839394 1.220182e-01
## 194         24    28         22 5.458137e-02 0.7713660 0.5845888 9.336712e-02
## 195         26    22         22 5.157343e-02 0.7297959 0.7284148 7.080228e-02
## 196         28    24         20 4.288312e-02 0.7970679 0.4904024 8.744475e-02
## 197         20    30         20 4.137529e-02 0.8048980 0.4438810 9.321258e-02
## 198         26    24         20 9.545613e-02 0.7946939 0.5219437 1.828859e-01
## 199         16    28         26 2.808265e-02 0.8175510 0.4133559 6.793818e-02
## 200         26    22         22 3.007482e-03 0.8204082 0.4325575 6.952791e-03
## 201         24    28         18 2.687840e-02 0.8012245 0.4641139 5.791338e-02
## 202         26    22         22 3.137712e-02 0.8269388 0.4148103 7.564210e-02
## 203         24    28         20 6.112340e-02 0.8202160 0.4294315 1.423356e-01
## 204         24    22         24 4.318680e-02 0.8244898 0.4240174 1.018515e-01
## 205         24    26         22 2.375752e-02 0.8252315 0.4199139 5.657712e-02
## 206         28    24         24 1.205773e-03 0.8182133 0.4407936 2.735460e-03
## 207         24    28         20 1.009119e-01 0.8013117 0.4913680 2.053692e-01
## 208         26    24         20 5.129886e-02 0.8146939 0.4562555 1.124345e-01
## 209         24    26         22 4.144946e-02 0.8001543 0.4916077 8.431409e-02
## 210         24    24         24 1.562500e-03 0.8310185 0.4066852 3.842038e-03
## 211         24    24         24 6.294256e-03 0.8290895 0.4122848 1.526677e-02
## 212         22    24         24 1.565904e-03 0.8326531 0.4009395 3.905587e-03
## 213         24    22         24 1.483755e-01 0.7906122 0.5247258 2.827677e-01
## 214         22    26         24 3.307110e-02 0.8271605 0.4155131 7.959098e-02
## 215         22    22         26 2.211040e-02 0.7514286 0.6552687 3.374250e-02
## 216         24    26         20 2.379459e-02 0.8114286 0.4578819 5.196666e-02
## 217         28    24         18 1.111111e-03 0.8142857 0.4367168 2.544237e-03
## 218         22    28         24 5.635484e-02 0.7333820 0.6992366 8.059481e-02
## 219         24    28         24 7.274576e-02 0.8192521 0.4403554 1.651978e-01
## 220         22    28         22 2.475649e-02 0.8240741 0.4155844 5.957031e-02
## 221         24    30         16 1.538826e-03 0.7991837 0.4615041 3.334371e-03
## 222         22    26         26 6.912628e-02 0.8126370 0.4540269 1.522515e-01
## 223         22    28         20 1.029685e-01 0.8142857 0.4491912 2.292308e-01
## 224         26    28         18 5.339105e-02 0.7052469 0.7949359 6.716397e-02
## 225         28    28         20 5.691877e-02 0.7988227 0.4787913 1.188801e-01
## 226         26    26         24 1.417798e-02 0.8119806 0.4639987 3.055608e-02
## 227         26    22         24 4.860140e-02 0.7391975 0.6921362 7.021942e-02
## 228         22    30         20 4.143208e-02 0.8206019 0.4163867 9.950385e-02
## 229         26    22         26 3.156843e-02 0.6968590 0.8578822 3.679810e-02
## 230         24    26         24 1.732502e-02 0.8301680 0.4081469 4.244799e-02
## 231         26    26         20 2.019580e-02 0.8024691 0.4818343 4.191442e-02
## 232         20    28         22 4.746672e-02 0.7808163 0.5613268 8.456165e-02
## 233         20    28         22 4.580286e-02 0.7673469 0.6025870 7.601036e-02
## 234         22    28         22 2.130682e-02 0.8070988 0.4610638 4.621230e-02
## 235         20    28         22 8.271299e-03 0.8257143 0.4073159 2.030684e-02
## 236         22    24         26 9.713922e-03 0.8055556 0.4782976 2.030937e-02
## 237         20    28         26 2.260490e-02 0.8210373 0.4260847 5.305258e-02
## 238         24    26         24 5.178776e-02 0.7213294 0.7748296 6.683762e-02
## 239         22    30         20 2.060176e-02 0.8028549 0.4695907 4.387174e-02
## 240         22    30         22 2.267677e-02 0.8056976 0.4683645 4.841692e-02
## 241         20    30         20 3.350154e-02 0.8142857 0.4239766 7.901743e-02
## 242         22    28         24 1.112142e-02 0.8294375 0.4056278 2.741779e-02
## 243         26    28         20 6.271749e-02 0.8078890 0.4711896 1.331046e-01
## 244         18    30         22 2.532267e-02 0.7665306 0.5515861 4.590882e-02
## 245         20    30         20 4.722222e-02 0.7273469 0.6791994 6.952630e-02
## 246         24    26         24 1.594295e-03 0.7841490 0.5493921 2.901925e-03
## 247         18    28         24 2.129900e-02 0.7979592 0.4848679 4.392742e-02
## 248         26    26         18 6.101614e-02 0.8204082 0.4282009 1.424942e-01
## 249         28    20         22 3.335682e-02 0.8134694 0.4368928 7.635014e-02
## 250         22    30         18 8.727422e-03 0.8036735 0.4557818 1.914825e-02
## 251         24    26         24 1.105769e-01 0.7231556 0.7628205 1.449580e-01
## 252         26    24         22 3.764863e-02 0.7966821 0.5008822 7.516464e-02
## 253         28    24         20 1.611722e-02 0.8260031 0.4085674 3.944812e-02
## 254         22    24         24 6.092172e-02 0.8163265 0.4478220 1.360400e-01
## 255         26    26         18 5.405405e-02 0.8200000 0.4250871 1.271599e-01
## 256         18    30         24 1.330967e-02 0.8013117 0.4646124 2.864683e-02
## 257         18    30         22 8.727422e-03 0.8036735 0.4557818 1.914825e-02
## 258         26    24         22 3.108003e-04 0.8221451 0.4300223 7.227539e-04
## 259         24    28         24 8.845899e-03 0.6973684 0.8582659 1.030671e-02
## 260         22    24         24 8.869464e-02 0.7048980 0.8285036 1.070540e-01
## 261         20    26         26 9.842038e-02 0.8105710 0.4545894 2.165039e-01
## 262         26    22         22 8.280341e-04 0.8126531 0.4575063 1.809886e-03
## 263         26    26         18 7.116693e-02 0.7881633 0.5050392 1.409137e-01
## 264         22    22         26 1.572713e-01 0.7840816 0.5485852 2.866853e-01
## 265         26    22         24 1.589777e-01 0.7843364 0.5337766 2.978356e-01
## 266         28    28         20 6.613162e-02 0.8479917 0.3551770 1.861934e-01
## 267         26    28         24 3.171811e-02 0.8175542 0.4467517 7.099717e-02
## 268         26    26         24 1.533531e-02 0.8144044 0.4557551 3.364813e-02
## 269         20    28         22 1.394150e-02 0.7755102 0.5516029 2.527452e-02
## 270         26    26         24 5.053540e-03 0.8282548 0.4143459 1.219643e-02
## 271         26    26         24 5.053540e-03 0.8282548 0.4143459 1.219643e-02
## 272         22    24         24 9.442908e-02 0.8163265 0.4494129 2.101165e-01
## 273         24    26         20 6.476449e-02 0.8065306 0.4774798 1.356382e-01
## 274         22    26         22 3.729604e-02 0.8134694 0.4565770 8.168619e-02
## 275         22    28         22 3.165584e-02 0.8094136 0.4682877 6.759914e-02
## 276         24    30         18 1.750000e-02 0.8225309 0.4101313 4.266926e-02
## 277         18    26         26 5.398495e-02 0.7820408 0.5378549 1.003709e-01
## 278         24    30         24 5.823610e-02 0.8162393 0.4473822 1.301708e-01
## 279         24    26         22 8.171828e-02 0.8132716 0.4511219 1.811446e-01
## 280         26    26         20 3.396450e-02 0.7908951 0.5099137 6.660832e-02
## 281         22    26         24 3.419323e-02 0.8155864 0.4535928 7.538311e-02
## 282         28    24         20 5.093474e-02 0.8144290 0.4537592 1.122506e-01
## 283         24    26         24 1.478914e-01 0.8082542 0.4744111 3.117368e-01
## 284         26    26         22 1.397117e-01 0.7921841 0.5141295 2.717442e-01
## 285         26    30         26 2.453687e-05 0.8316478 0.4020175 6.103432e-05
## 286         24    22         24 1.413281e-03 0.8097959 0.4684942 3.016645e-03
## 287         20    28         24 7.738095e-02 0.7993827 0.4870381 1.588807e-01
## 288         28    22         20 1.614153e-02 0.8048980 0.4731468 3.411527e-02
## 289         26    22         24 6.189615e-02 0.7851080 0.5385543 1.149302e-01
## 290         20    28         26 9.662939e-02 0.8119065 0.4501752 2.146484e-01
## 291         26    28         18 1.407967e-02 0.7199074 0.7294795 1.930098e-02
## 292         26    24         20 5.141251e-03 0.8110204 0.4587608 1.120682e-02
## 293         26    22         24 2.235451e-01 0.7935957 0.5202362 4.296993e-01
## 294         22    24         24 2.256595e-02 0.8289796 0.4123846 5.472066e-02
## 295         22    24         24 4.749116e-02 0.7530612 0.6504886 7.300844e-02
## 296         22    30         20 2.902711e-02 0.7704475 0.5842855 4.967967e-02
## 297         22    30         18 1.089325e-03 0.8253061 0.3953182 2.755564e-03
## 298         22    30         22 4.208236e-02 0.7337473 0.7210643 5.836146e-02
## 299         24    26         24 1.662480e-02 0.8133674 0.4590774 3.621351e-02
## 300         26    26         24 2.996613e-02 0.8240997 0.4261312 7.032136e-02
## 301         24    24         26 5.432281e-02 0.8093499 0.4674165 1.162193e-01
## 302         22    26         24 4.185004e-02 0.8252315 0.4199139 9.966339e-02
## 303         28    28         22 1.029468e-01 0.8083498 0.4684805 2.197462e-01
## 304         26    24         20 5.582265e-02 0.8171429 0.4453783 1.253376e-01
## 305         26    28         26 1.506494e-02 0.8078125 0.4760984 3.164248e-02
## 306         22    22         26 9.614955e-02 0.8151020 0.4473704 2.149216e-01
## 307         26    20         24 6.279006e-03 0.8297959 0.4031808 1.557367e-02
## 308         22    30         24 4.148002e-03 0.8227147 0.4216011 9.838688e-03
## 309         26    26         20 2.253771e-02 0.8043981 0.4716547 4.778435e-02
## 310         26    26         24 2.277526e-02 0.8099030 0.4673102 4.873693e-02
## 311         24    24         22 4.741863e-02 0.7771429 0.5677362 8.352230e-02
## 312         24    26         22 9.497396e-02 0.8036265 0.4894836 1.940289e-01
## 313         20    28         22 2.196411e-03 0.8289796 0.4001388 5.489124e-03
## 314         22    30         20 1.272727e-02 0.7530864 0.6358420 2.001641e-02
## 315         22    30         18 1.181167e-02 0.7240816 0.7237083 1.632103e-02
## 316         22    30         22 2.331241e-02 0.8016801 0.4780617 4.876443e-02
## 317         24    24         22 6.265993e-02 0.8110204 0.4692966 1.335188e-01
## 318         28    24         20 4.691358e-02 0.8097994 0.4483087 1.046457e-01
## 319         26    22         22 2.222777e-02 0.8220408 0.4290665 5.180496e-02
## 320         26    26         22 1.149406e-01 0.7735573 0.5787819 1.985905e-01
## 321         22    28         22 2.355237e-02 0.8244599 0.4192490 5.617753e-02
## 322         22    28         20 4.541632e-02 0.8191837 0.4344793 1.045304e-01
## 323         24    28         22 1.755002e-02 0.8287071 0.4072393 4.309510e-02
## 324         20    26         24 3.231813e-03 0.8110204 0.4577220 7.060646e-03
## 325         22    26         24 1.623377e-02 0.8256173 0.4207732 3.858080e-02
## 326         26    26         18 1.121957e-01 0.7942857 0.5182316 2.164972e-01
## 327         24    24         22 2.559563e-03 0.8163265 0.4494129 5.695349e-03
## 328         24    22         24 2.251422e-02 0.8273469 0.4169806 5.399346e-02
## 329         26    28         24 9.052981e-02 0.8057199 0.4727225 1.915073e-01
## 330         20    28         22 2.969208e-02 0.7306122 0.7311326 4.061108e-02
## 331         28    24         20 7.974882e-02 0.7172068 0.7747637 1.029331e-01
## 332         28    24         24 2.274115e-02 0.8060942 0.4761087 4.776462e-02
## 333         26    26         22 3.859866e-02 0.7136596 0.7992570 4.829317e-02
## 334         22    28         20 9.850694e-03 0.8012245 0.4809661 2.048106e-02
## 335         24    22         24 9.495662e-02 0.7281633 0.7483736 1.268840e-01
## 336         26    24         22 1.411642e-02 0.8290895 0.4095709 3.446637e-02
## 337         24    28         22 2.430588e-04 0.8192111 0.4343774 5.595567e-04
## 338         24    26         22 3.949850e-02 0.7503858 0.6686393 5.907296e-02
## 339         24    24         22 3.116865e-02 0.8236735 0.4243663 7.344751e-02
## 340         24    26         24 6.694271e-02 0.7841490 0.5458571 1.226378e-01
## 341         24    26         20 6.519088e-02 0.8061224 0.4675138 1.394416e-01
## 342         26    28         20 3.637363e-02 0.6910153 0.8573914 4.242359e-02
## 343         20    28         22 1.377410e-02 0.8032653 0.4708056 2.925646e-02
## 344         24    28         20 6.429133e-03 0.8260031 0.4101688 1.567436e-02
## 345         24    26         20 7.806430e-03 0.8081633 0.4708301 1.658014e-02
## 346         26    24         20 6.708309e-02 0.7967347 0.4953072 1.354373e-01
## 347         24    26         22 7.193328e-03 0.8132716 0.4574415 1.572513e-02
## 348         24    26         20 1.942635e-01 0.7951020 0.4970351 3.908445e-01
## 349         20    28         24 5.275974e-02 0.8109568 0.4448145 1.186107e-01
## 350         26    28         22 4.934125e-02 0.8036704 0.4777726 1.032735e-01
## 351         18    28         24 2.036080e-02 0.8175510 0.4321712 4.711281e-02
## 352         20    28         22 7.552267e-02 0.8110204 0.4598298 1.642405e-01
## 353         22    28         22 6.980910e-02 0.8136574 0.4500009 1.551310e-01
## 354         28    20         22 3.813784e-02 0.8167347 0.4236518 9.002167e-02
## 355         22    28         22 6.140887e-02 0.8028549 0.4916904 1.248934e-01
## 356         26    28         22 7.075377e-04 0.8286011 0.4074400 1.736544e-03
## 357         30    24         16 2.695878e-03 0.8224490 0.3956782 6.813308e-03
## 358         22    28         22 1.201889e-01 0.7870370 0.5255921 2.286734e-01
## 359         28    30         24 1.892857e-02 0.7745390 0.5780338 3.274648e-02
## 360         22    28         20 1.598011e-02 0.7118367 0.7833351 2.040010e-02
## 361         24    24         22 1.328335e-01 0.8028571 0.4881646 2.721080e-01
## 362         26    26         20 1.114635e-01 0.8040123 0.4747232 2.347969e-01
## 363         24    28         20 1.142857e-02 0.8167438 0.4326338 2.641627e-02
## 364         28    26         18 5.100257e-02 0.8101852 0.4432548 1.150638e-01
## 365         18    30         22 3.893359e-02 0.8093878 0.4140548 9.403003e-02
## 366         22    30         20 4.940231e-02 0.7789352 0.5739025 8.608137e-02
## 367         24    24         26 3.303748e-02 0.8005844 0.4953444 6.669597e-02
## 368         24    30         24 1.005491e-02 0.8228139 0.4237515 2.372831e-02
## 369         26    28         16 2.944420e-02 0.7897959 0.4838750 6.085083e-02
## 370         28    26         20 8.739165e-03 0.8181154 0.4300250 2.032246e-02
## 371         20    26         24 1.486607e-01 0.8077551 0.4799044 3.097715e-01
## 372         28    28         18 1.643119e-02 0.8235939 0.4046246 4.060847e-02
## 373         26    28         18 1.971558e-02 0.6944444 0.8518681 2.314393e-02
## 374         24    28         22 1.509851e-02 0.8119065 0.4572630 3.301931e-02
## 375         22    28         22 3.210832e-02 0.8082562 0.4571491 7.023599e-02
## 376         22    26         26 4.351981e-02 0.8042367 0.4787574 9.090160e-02
## 377         20    24         26 2.415064e-02 0.8236735 0.4197130 5.754085e-02
## 378         20    26         26 2.951567e-02 0.8152006 0.4419600 6.678357e-02
## 379         20    30         22 1.428571e-02 0.8209877 0.4163534 3.431151e-02
## 380         24    26         22 8.479652e-02 0.8136574 0.4588626 1.847972e-01
## 381         20    26         24 4.706197e-03 0.8269388 0.4104874 1.146490e-02
## 382         26    28         22 6.362009e-02 0.7434211 0.6759524 9.411920e-02
## 383         26    22         22 7.241309e-02 0.8024490 0.4791170 1.511386e-01
## 384         28    24         20 2.639092e-02 0.8229167 0.4198513 6.285777e-02
## 385         22    26         24 8.131403e-04 0.8260031 0.4180355 1.945147e-03
## 386         30    26         20 5.730769e-02 0.8199446 0.4267412 1.342915e-01
## 387         24    26         20 7.282400e-03 0.8044898 0.4817319 1.511712e-02
## 388         24    22         24 1.515152e-02 0.8306122 0.4071551 3.721313e-02
## 389         20    30         24 1.076389e-02 0.8042367 0.4609068 2.335372e-02
## 390         22    28         20 1.741601e-02 0.8114286 0.4543397 3.833257e-02
## 391         24    22         24 1.578283e-04 0.7183673 0.7818526 2.018645e-04
## 392         22    24         26 6.629734e-03 0.8233025 0.4265079 1.554422e-02
## 393         22    26         24 5.726529e-02 0.8097994 0.4722662 1.212564e-01
## 394         22    28         20 2.427686e-02 0.8048980 0.4775032 5.084125e-02
## 395         22    26         22 7.746100e-02 0.7853061 0.5511972 1.405323e-01
## 396         24    24         24 3.389831e-02 0.7839506 0.5511811 6.150121e-02
## 397         24    28         20 8.939029e-02 0.7951389 0.5020586 1.780475e-01
## 398         20    26         24 1.312576e-01 0.8032653 0.4808735 2.729567e-01
## 399         20    28         26 1.647328e-02 0.8173850 0.4339667 3.795977e-02
## 400         26    24         26 2.124686e-02 0.8105956 0.4669328 4.550303e-02
## 401         22    26         22 2.959858e-02 0.8265306 0.4148839 7.134183e-02
## 402         20    28         22 3.700658e-03 0.8277551 0.4026134 9.191591e-03
## 403         22    26         22 9.324009e-03 0.8244898 0.4232500 2.202955e-02
## 404         26    30         18 3.567119e-03 0.8246896 0.3998456 8.921242e-03
## 405         20    28         24 3.144880e-02 0.8221451 0.4223235 7.446614e-02
## 406         24    24         26 3.526139e-02 0.8181154 0.4452753 7.919008e-02
## 407         24    28         18 5.212030e-02 0.8208163 0.4244848 1.227849e-01
## 408         18    30         22 1.591483e-01 0.7893878 0.5408793 2.942399e-01
## 409         22    26         22 1.195856e-02 0.8297959 0.4065919 2.941169e-02
## 410         24    26         22 7.546464e-03 0.7858796 0.5444555 1.386057e-02
## 411         24    24         24 2.607562e-03 0.7650463 0.6142209 4.245316e-03
## 412         24    26         22 2.250307e-03 0.8290895 0.4098930 5.489985e-03
## 413         24    30         24 5.085227e-02 0.7403024 0.7032860 7.230668e-02
## 414         26    30         24 1.907814e-04 0.8050000 0.4783604 3.988236e-04
## 415         22    26         22 4.746964e-02 0.8069388 0.4791678 9.906685e-02
## 416         24    28         18 4.036900e-02 0.8012245 0.4715430 8.561043e-02
## 417         24    28         20 1.751806e-02 0.8067130 0.4704653 3.723561e-02
## 418         26    26         18 3.139717e-03 0.8004082 0.4769152 6.583387e-03
## 419         24    24         22 1.423509e-02 0.7330612 0.7277620 1.956009e-02
## 420         20    26         24 2.058366e-02 0.8106122 0.4555510 4.518409e-02
## 421         26    28         18 8.750672e-03 0.8198302 0.4183116 2.091903e-02
## 422         26    24         20 4.328494e-02 0.8236735 0.4197130 1.031299e-01
## 423         24    26         22 5.642804e-02 0.8013117 0.4880089 1.156291e-01
## 424         22    26         24 4.262637e-02 0.8244599 0.4234254 1.006703e-01
## 425         26    24         20 3.772454e-02 0.8240816 0.4237786 8.901947e-02
## 426         24    26         22 6.932819e-02 0.8013117 0.4950086 1.400545e-01
## 427         18    30         24 4.972973e-02 0.8190586 0.4203486 1.183059e-01
## 428         20    26         24 1.109896e-01 0.8044898 0.4763364 2.330069e-01
## 429         18    28         24 7.182356e-02 0.7624490 0.5706936 1.258531e-01
## 430         16    28         26 7.906598e-02 0.8081633 0.4344163 1.820051e-01
## 431         18    30         22 2.818887e-02 0.8093878 0.4310274 6.539925e-02
## 432         18    28         24 2.490942e-03 0.8106122 0.4454935 5.591422e-03
## 433         20    24         26 2.878415e-02 0.8208163 0.4257704 6.760487e-02
## 434         18    30         24 4.687500e-03 0.8055556 0.4508621 1.039675e-02
## 435         24    26         20 8.235054e-02 0.8093878 0.4627378 1.779637e-01
## 436         24    24         22 9.297052e-02 0.7922449 0.5191482 1.790828e-01
## 437         20    30         26 1.492207e-03 0.8092105 0.4552429 3.277827e-03
## 438         30    28         18 6.990998e-02 0.7815097 0.5240346 1.334072e-01
## 439         26    22         22 6.209790e-02 0.8102041 0.4684434 1.325622e-01
## 440         26    22         26 1.952311e-01 0.7878013 0.5265407 3.707806e-01
## 441         26    22         24 2.976511e-02 0.8260031 0.4167715 7.141829e-02
## 442         24    24         24 6.718750e-02 0.8202160 0.4383819 1.532625e-01
## 443         18    30         24 1.774623e-03 0.8036265 0.4599136 3.858601e-03
## 444         22    26         22 1.531863e-02 0.8093878 0.4632171 3.307009e-02
## 445         28    24         26 2.185295e-02 0.8053912 0.4825802 4.528357e-02
## 446         26    22         22 1.408116e-02 0.8036735 0.4847585 2.904778e-02
## 447         24    30         18 7.746592e-02 0.8043981 0.4482494 1.728188e-01
## 448         26    26         18 1.730769e-02 0.8236735 0.4156438 4.164068e-02
## 449         22    26         24 2.866452e-03 0.8240741 0.4248743 6.746588e-03
## 450         24    26         22 1.349813e-01 0.8028549 0.4816539 2.802454e-01
## 451         20    28         22 3.941761e-02 0.7134694 0.7889796 4.996024e-02
## 452         26    24         22 9.286168e-03 0.8233025 0.4280415 2.169455e-02
## 453         26    26         18 2.723585e-02 0.8106122 0.4592489 5.930520e-02
## 454         20    30         20 3.199174e-02 0.7881633 0.5142413 6.221154e-02
## 455         18    28         24 1.393428e-02 0.8261224 0.4036836 3.451782e-02
## 456         24    26         20 2.916132e-02 0.8228571 0.4221198 6.908305e-02
## 457         26    24         24 5.464209e-02 0.8035062 0.4843502 1.128153e-01
## 458         24    28         24 2.746965e-02 0.8099030 0.4698691 5.846236e-02
## 459         30    28         18 1.622815e-02 0.8078255 0.4421217 3.670517e-02
## 460         22    28         26 1.954409e-02 0.7368421 0.6959112 2.808417e-02
## 461         16    30         24 4.232804e-02 0.7122449 0.7579752 5.584357e-02
## 462         24    28         22 1.393398e-02 0.7129291 0.7938960 1.755139e-02
## 463         22    26         24 1.425166e-01 0.7993827 0.4901450 2.907641e-01
## 464         24    26         24 1.334026e-02 0.8308985 0.4062694 3.283601e-02
## 465         26    22         22 1.341991e-01 0.8057143 0.4842037 2.771543e-01
## 466         26    20         24 2.896756e-02 0.8032653 0.4789582 6.048035e-02
## 467         24    26         22 1.032301e-02 0.8013117 0.4896755 2.108133e-02
## 468         20    28         22 3.787879e-02 0.6979592 0.8514620 4.448676e-02
## 469         24    26         20 7.099155e-03 0.7383673 0.6986719 1.016093e-02
## 470         26    22         22 3.381507e-02 0.8142857 0.4551589 7.429290e-02
## 471         20    28         22 1.879841e-02 0.8240816 0.4124454 4.557793e-02
## 472         26    24         20 4.356358e-02 0.8012245 0.4986383 8.736509e-02
## 473         22    28         20 6.818182e-02 0.7861224 0.5161899 1.320867e-01
## 474         20    28         24 6.338870e-02 0.7453704 0.6873114 9.222705e-02
## 475         24    24         22 8.326441e-02 0.8167347 0.4461103 1.866453e-01
## 476         22    26         24 5.631752e-02 0.8225309 0.4281249 1.315446e-01
## 477         22    28         20 2.774097e-02 0.8012245 0.4903441 5.657449e-02
## 478         26    26         24 6.574622e-04 0.8102493 0.4670173 1.407790e-03
## 479         26    22         24 5.403687e-04 0.8070988 0.4744715 1.138885e-03
## 480         22    26         24 4.579784e-02 0.8009259 0.4944016 9.263288e-02
## 481         28    26         20 2.133348e-02 0.8053324 0.4793760 4.450261e-02
## 482         24    24         22 8.783487e-04 0.8163265 0.4484848 1.958480e-03
## 483         18    30         24 1.774623e-03 0.8036265 0.4599136 3.858601e-03
## 484         24    26         22 8.198698e-03 0.8252315 0.4217970 1.943754e-02
## 485         26    26         22 2.148760e-02 0.8224982 0.4264492 5.038725e-02
## 486         22    30         22 7.960996e-03 0.8685172 0.2895532 2.749407e-02
## 487         24    26         20 6.317354e-03 0.8130612 0.4492843 1.406093e-02
## 488         22    26         24 4.025896e-02 0.8240741 0.4248743 9.475499e-02
## 489         24    28         18 9.050179e-02 0.7118367 0.7413354 1.220794e-01
## 490         22    26         22 2.097902e-02 0.8285714 0.4096938 5.120659e-02
## 491         22    26         24 1.232782e-01 0.7067901 0.8104903 1.521033e-01
## 492         24    28         20 5.776902e-02 0.8155864 0.4508853 1.281235e-01
## 493         26    22         22 3.895056e-02 0.8138776 0.4486256 8.682197e-02
## 494         28    24         24 2.259771e-02 0.8223684 0.4259048 5.305814e-02
## 495         24    26         24 9.253066e-02 0.8093499 0.4725539 1.958097e-01
## 496         22    26         24 1.080031e-01 0.8074846 0.4821901 2.239845e-01
## 497         22    30         18 2.674855e-01 0.7583673 0.5836731 4.582796e-01
## 498         20    30         26 5.470571e-02 0.8164820 0.4355495 1.256016e-01
## 499         26    26         18 4.082404e-02 0.8208163 0.4176261 9.775260e-02
## 500         24    26         22 2.076385e-02 0.7978395 0.5075408 4.091070e-02
## 501         24    26         22 2.846845e-02 0.7885802 0.5379997 5.291536e-02
## 502         26    28         22 4.713235e-03 0.8074792 0.4673594 1.008482e-02
## 503         20    28         24 7.202381e-02 0.8016975 0.4855493 1.483347e-01
## 504         22    28         24 8.747062e-02 0.8024105 0.4911932 1.780778e-01
## 505         22    30         24 8.764569e-02 0.8026316 0.4883259 1.794820e-01
## 506         26    26         18 3.415566e-03 0.8057143 0.4668728 7.315839e-03
## 507         26    26         22 3.873702e-02 0.8195763 0.4345512 8.914259e-02
## 508         24    26         22 1.173296e-01 0.8105710 0.4660285 2.517648e-01
## 509         20    26         24 2.289377e-02 0.8028571 0.4888448 4.683240e-02
## 510         18    30         22 9.765208e-02 0.7987755 0.4812767 2.029021e-01
## 511         28    20         22 4.545455e-02 0.8061224 0.4562716 9.962169e-02
## 512         26    26         22 1.928716e-02 0.7545654 0.6468295 2.981801e-02
## 513         26    26         22 3.101376e-03 0.7220599 0.7635076 4.062011e-03
## 514         24    26         24 6.628224e-02 0.8195763 0.4407680 1.503790e-01
## 515         22    28         20 2.223320e-02 0.8089796 0.4553711 4.882436e-02
## 516         18    30         24 5.763889e-02 0.8024691 0.4780769 1.205640e-01
## 517         26    26         24 6.146305e-02 0.7243767 0.7559445 8.130630e-02
## 518         26    26         18 5.811069e-02 0.8073469 0.4552470 1.276465e-01
## 519         24    26         20 5.975275e-02 0.8146939 0.4460267 1.339668e-01
## 520         24    30         22 4.044920e-02 0.8071330 0.4751492 8.512947e-02
## 521         22    28         20 2.078159e-02 0.7310204 0.6998376 2.969487e-02
## 522         28    22         22 1.201437e-02 0.8121142 0.4485116 2.678720e-02
## 523         26    26         24 8.660010e-03 0.8088643 0.4703800 1.841067e-02
## 524         28    28         18 2.441450e-02 0.8199416 0.4242090 5.755299e-02
## 525         24    24         22 2.576905e-02 0.8065306 0.4793584 5.375739e-02
## 526         28    24         20 1.040800e-01 0.8097994 0.4574968 2.274989e-01
## 527         20    26         24 1.258903e-01 0.7836735 0.5410924 2.326595e-01
## 528         22    26         26 2.411422e-02 0.8086194 0.4710646 5.119089e-02
## 529         20    28         22 4.803379e-02 0.8212245 0.4246566 1.131121e-01
## 530         20    28         22 1.243316e-01 0.8089796 0.4592239 2.707428e-01
## 531         24    24         22 6.123737e-03 0.8285714 0.4124869 1.484589e-02
## 532         18    30         24 6.931818e-02 0.8070988 0.4519120 1.533887e-01
## 533         26    24         22 5.286191e-02 0.8163580 0.4485472 1.178514e-01
## 534         26    28         22 4.272044e-03 0.8310249 0.4009037 1.065604e-02
## 535         26    26         22 5.199779e-02 0.7512783 0.6667936 7.798185e-02
## 536         20    28         22 2.346055e-01 0.7653061 0.5799515 4.045261e-01
## 537         26    24         24 2.549068e-02 0.7227904 0.7690526 3.314556e-02
## 538         24    28         18 5.359101e-02 0.8163265 0.4245833 1.262202e-01
## 539         24    24         22 3.234542e-02 0.8191837 0.4402357 7.347296e-02
## 540         26    20         24 8.462013e-03 0.8110204 0.4605674 1.837302e-02
## 541         20    28         24 4.241071e-03 0.8109568 0.4542748 9.335915e-03
## 542         24    26         20 6.404735e-03 0.8216327 0.4269428 1.500139e-02
## 543         20    28         22 6.763636e-02 0.7934694 0.5203891 1.299727e-01
## 544         22    28         22 4.167572e-02 0.8132716 0.4562828 9.133747e-02
## 545         24    26         20 1.335256e-01 0.8065306 0.4738010 2.818180e-01
## 546         24    24         24 6.656347e-02 0.8217593 0.4338028 1.534418e-01
## 547         22    28         20 6.383073e-02 0.7897959 0.5021611 1.271120e-01
## 548         24    26         22 7.185090e-02 0.7472994 0.6650613 1.080365e-01
## 549         22    26         22 1.531863e-02 0.8093878 0.4632171 3.307009e-02
## 550         22    26         22 2.762998e-02 0.8122449 0.4605545 5.999285e-02
## 551         22    28         20 1.038642e-02 0.8273469 0.4038884 2.571606e-02
## 552         28    26         24 3.593265e-02 0.8211703 0.4319027 8.319617e-02
## 553         26    24         22 3.276444e-02 0.8260031 0.4185744 7.827626e-02
## 554         26    24         20 9.729853e-03 0.8236735 0.4229149 2.300665e-02
## 555         26    22         24 1.930369e-02 0.7843364 0.5489665 3.516369e-02
## 556         26    28         24 6.111111e-02 0.7445759 0.6828918 8.948871e-02
## 557         26    30         24 5.717916e-02 0.7428125 0.6878418 8.312836e-02
## 558         22    28         24 3.121527e-03 0.8228634 0.4225804 7.386825e-03
## 559         24    26         22 4.968568e-03 0.8252315 0.4199139 1.183235e-02
## 560         22    26         24 0.000000e+00 0.8325617 0.3994439 0.000000e+00
## 561         22    26         22 1.025641e-01 0.7004082 0.8619329 1.189931e-01
## 562         28    24         20 1.460084e-02 0.6936728 0.8509296 1.715869e-02
## 563         20    28         22 3.700658e-03 0.8277551 0.4026134 9.191591e-03
## 564         24    28         18 1.452991e-02 0.6983673 0.8128125 1.787610e-02
## 565         18    28         24 2.716049e-02 0.8102041 0.4486426 6.053927e-02
## 566         26    18         26 5.372405e-03 0.8281633 0.3994979 1.344789e-02
## 567         26    28         20 7.912088e-03 0.8287071 0.4031732 1.962454e-02
## 568         22    30         22 5.628680e-03 0.8243243 0.4127173 1.363810e-02
## 569         24    26         20 6.279006e-03 0.8297959 0.4031808 1.557367e-02
## 570         26    26         22 3.319443e-02 0.8038714 0.4847511 6.847727e-02
## 571         24    28         24 2.940775e-02 0.8223684 0.4299048 6.840526e-02
## 572         22    28         20 1.079172e-01 0.8114286 0.4543397 2.375253e-01
## 573         26    26         20 4.211474e-02 0.8101852 0.4544615 9.266954e-02
## 574         26    30         22 3.700914e-02 0.8060487 0.4690197 7.890744e-02
## 575         26    30         22 3.700914e-02 0.8060487 0.4690197 7.890744e-02
## 576         18    28         24 1.666667e-02 0.8228571 0.4146825 4.019139e-02
## 577         24    26         20 6.606512e-02 0.8081633 0.4792606 1.378480e-01
## 578         30    24         18 3.736626e-02 0.8105710 0.4433127 8.428871e-02
## 579         22    26         24 8.094390e-02 0.8013117 0.5013114 1.614643e-01
## 580         22    28         22 9.754652e-02 0.7557870 0.6466657 1.508454e-01
## 581         24    30         24 3.075397e-03 0.8297173 0.4027932 7.635176e-03
## 582         26    28         20 6.434647e-02 0.8035062 0.4692293 1.371323e-01
## 583         20    26         24 1.444469e-01 0.8073469 0.4740381 3.047158e-01
## 584         28    24         18 5.701754e-02 0.7800000 0.5218472 1.092610e-01
## 585         28    22         20 5.304573e-02 0.8542857 0.3335577 1.590301e-01
## 586         28    22         20 2.255809e-03 0.8273469 0.4048975 5.571308e-03
## 587         22    30         18 3.573146e-02 0.7971429 0.4919445 7.263312e-02
## 588         24    26         22 1.175316e-02 0.7735340 0.5785780 2.031387e-02
## 589         22    30         18 4.591368e-04 0.8138776 0.4265423 1.076416e-03
## 590         22    28         22 1.252029e-02 0.8271605 0.4104599 3.050308e-02
## 591         20    28         22 4.949163e-02 0.8187755 0.4238195 1.167753e-01
## 592         28    26         22 7.047374e-03 0.8161357 0.4426490 1.592091e-02
## 593         28    26         24 3.249158e-02 0.8241289 0.4269047 7.610969e-02
## 594         26    24         22 1.224775e-01 0.8063272 0.4709673 2.600553e-01
## 595         20    28         26 6.915077e-03 0.8206720 0.4232417 1.633836e-02
## 596         24    28         20 9.672727e-02 0.7924383 0.5162610 1.873612e-01
## 597         20    28         22 6.518675e-02 0.8077551 0.4515825 1.443518e-01
## 598         26    24         22 2.125381e-02 0.8221451 0.4272658 4.974375e-02
## 599         24    26         20 5.802438e-02 0.8012245 0.4812656 1.205662e-01
## 600         24    30         18 5.649351e-02 0.8086420 0.4454198 1.268320e-01
## 601         22    28         20 1.099472e-01 0.8044898 0.4630783 2.374269e-01
## 602         24    28         20 5.109599e-02 0.7272377 0.7145737 7.150556e-02
## 603         26    26         22 1.059112e-02 0.7352082 0.7124669 1.486542e-02
## 604         20    28         22 3.273999e-01 0.7640816 0.5889666 5.558887e-01
## 605         28    22         22 1.315957e-01 0.8059414 0.4649898 2.830077e-01
## 606         20    28         24 5.109599e-02 0.7341821 0.7172735 7.123642e-02
## 607         28    24         24 4.740229e-02 0.8220222 0.4269968 1.110132e-01
## 608         24    26         20 6.201923e-03 0.8269388 0.4113733 1.507614e-02
## 609         24    30         16 3.057554e-02 0.7881633 0.5115225 5.977359e-02
## 610         24    28         22 1.040954e-01 0.7892622 0.5136992 2.026388e-01
## 611         22    28         22 7.764962e-02 0.8152006 0.4382087 1.771978e-01
## 612         26    30         22 4.253859e-03 0.8090072 0.4638912 9.169950e-03
## 613         20    28         22 7.298996e-02 0.7873469 0.5343324 1.366003e-01
## 614         28    24         24 2.235450e-02 0.8282548 0.4114509 5.433090e-02
## 615         24    30         26 6.392532e-02 0.8134375 0.4537467 1.408833e-01
## 616         26    26         22 8.920630e-02 0.8082542 0.4777238 1.867320e-01
## 617         22    28         20 1.987808e-03 0.8028571 0.4779082 4.159393e-03
## 618         24    22         26 7.775120e-02 0.8194444 0.4390087 1.771063e-01
## 619         24    22         26 4.004589e-02 0.7307099 0.7404982 5.407966e-02
## 620         24    26         20 2.238248e-03 0.8277551 0.4096084 5.464360e-03
## 621         22    24         24 3.465379e-02 0.8163265 0.4478220 7.738297e-02
## 622         22    26         22 3.929964e-02 0.8216327 0.4325520 9.085529e-02
## 623         20    28         22 4.600662e-03 0.7636735 0.6057772 7.594645e-03
## 624         22    22         26 1.058092e-02 0.8302041 0.4045974 2.615173e-02
## 625         24    24         24 2.363636e-02 0.8047840 0.4851390 4.872080e-02
## 626         24    22         24 1.880129e-02 0.7167347 0.7854326 2.393750e-02
## 627         24    26         24 2.901622e-02 0.8104456 0.4639679 6.253928e-02
## 628         26    26         22 2.885781e-02 0.8086194 0.4736357 6.092828e-02
## 629         30    20         24 7.708177e-02 0.8089847 0.4445824 1.733802e-01
## 630         22    24         24 3.040610e-03 0.8061224 0.4805715 6.327071e-03
## 631         26    22         22 9.405565e-02 0.8102041 0.4573462 2.056553e-01
## 632         22    26         22 2.291770e-01 0.7187755 0.7596923 3.016708e-01
## 633         22    26         22 1.441297e-02 0.8102041 0.4632647 3.111174e-02
## 634         18    30         24 6.222222e-02 0.8117284 0.4384030 1.419293e-01
## 635         24    26         24 3.458922e-03 0.8148283 0.4528181 7.638657e-03
## 636         20    26         24 2.422176e-02 0.8269388 0.4104874 5.900732e-02
## 637         20    26         24 2.422176e-02 0.8269388 0.4104874 5.900732e-02
## 638         28    26         20 9.353588e-02 0.7972973 0.5129261 1.823574e-01
## 639         24    30         20 1.994048e-02 0.8137327 0.4334306 4.600616e-02
## 640         22    30         20 3.088477e-02 0.8206019 0.4209001 7.337791e-02
## 641         24    24         22 5.904872e-02 0.8224490 0.4298256 1.373783e-01
## 642         22    30         20 3.263403e-03 0.8260031 0.4008407 8.141396e-03
## 643         22    30         20 3.263403e-03 0.8260031 0.4008407 8.141396e-03
## 644         20    28         24 1.040293e-01 0.8128858 0.4527222 2.297862e-01
## 645         28    28         24 1.341752e-02 0.7387500 0.6978487 1.922698e-02
## 646         22    30         18 9.716733e-03 0.8057143 0.4461638 2.177840e-02
## 647         26    24         20 6.891026e-02 0.8163265 0.4413462 1.561365e-01
## 648         26    28         20 7.160619e-02 0.7987582 0.4799806 1.491856e-01
## 649         26    26         18 6.311333e-03 0.7779592 0.5495556 1.148443e-02
## 650         28    24         22 1.928118e-02 0.7987582 0.5008962 3.849337e-02
## 651         22    22         26 9.439692e-03 0.8281633 0.4097647 2.303686e-02
## 652         24    28         24 6.827707e-02 0.8202909 0.4324710 1.578766e-01
## 653         22    24         24 1.286438e-02 0.8289796 0.4123846 3.119510e-02
## 654         26    26         20 5.184228e-02 0.7920525 0.5053693 1.025830e-01
## 655         22    30         20 6.388206e-03 0.8267747 0.3995673 1.598781e-02
## 656         22    24         24 4.944048e-02 0.8244898 0.4240174 1.166001e-01
## 657         20    28         22 7.812500e-02 0.7069388 0.7956120 9.819485e-02
## 658         18    26         26 1.021432e-02 0.8024490 0.4683552 2.180892e-02
## 659         20    30         22 6.202652e-02 0.8040123 0.4815041 1.288182e-01
## 660         28    22         22 3.962940e-02 0.8028549 0.4798954 8.257925e-02
## 661         26    26         20 7.656805e-02 0.7847222 0.5278421 1.450586e-01
## 662         26    26         18 6.105458e-02 0.8036735 0.4845099 1.260131e-01
## 663         24    28         24 2.326007e-03 0.8150970 0.4490331 5.180036e-03
## 664         20    28         22 5.795550e-02 0.8151020 0.4391132 1.319830e-01
## 665         26    20         24 1.025641e-01 0.6987755 0.8616104 1.190377e-01
## 666         24    28         18 6.768317e-03 0.8097959 0.4473146 1.513100e-02
## 667         24    28         24 0.000000e+00 0.7905125 0.5256242 0.000000e+00
## 668         22    28         22 5.298111e-02 0.8117284 0.4454718 1.189326e-01
## 669         22    22         26 1.470325e-02 0.7893878 0.5231449 2.810549e-02
## 670         22    30         20 7.077767e-02 0.8179012 0.4481647 1.579278e-01
## 671         24    28         24 8.172950e-02 0.8178670 0.4401738 1.856755e-01
## 672         24    24         22 2.422388e-02 0.8187755 0.4435255 5.461666e-02
## 673         24    26         22 1.841236e-02 0.7226080 0.7615470 2.417757e-02
## 674         22    30         20 1.136364e-02 0.8063272 0.4550674 2.497132e-02
## 675         26    28         18 4.865104e-03 0.8263889 0.3997599 1.217006e-02
## 676         26    26         26 1.509434e-03 0.8116371 0.4641555 3.252000e-03
## 677         24    26         20 5.633256e-02 0.7702041 0.5874268 9.589715e-02
## 678         24    26         20 5.633256e-02 0.7702041 0.5874268 9.589715e-02
## 679         28    22         26 2.158018e-02 0.8060942 0.4754863 4.538550e-02
## 680         26    24         24 4.728362e-02 0.8177502 0.4447097 1.063247e-01
## 681         24    28         20 4.197279e-02 0.8186728 0.4311431 9.735233e-02
## 682         26    26         22 8.056561e-03 0.8184806 0.4382971 1.838151e-02
## 683         24    28         18 7.788806e-03 0.8240816 0.4058527 1.919121e-02
## 684         20    26         24 2.111665e-02 0.7604082 0.6106535 3.458041e-02
## 685         26    20         26 3.796204e-02 0.8155864 0.4393421 8.640655e-02
## 686         22    26         22 5.967366e-03 0.8175510 0.4416941 1.351018e-02
## 687         22    26         22 8.951049e-02 0.7024490 0.8280598 1.080966e-01
## 688         24    28         22 1.049699e-01 0.7311907 0.7138765 1.470421e-01
## 689         24    28         20 5.463170e-02 0.7214506 0.7411612 7.371095e-02
## 690         24    26         20 5.163100e-02 0.7265306 0.7357354 7.017604e-02
## 691         26    26         20 3.489362e-02 0.8113426 0.4607703 7.572887e-02
## 692         22    26         24 4.478074e-02 0.8086420 0.4749940 9.427643e-02
## 693         22    28         22 8.302843e-02 0.8179012 0.4411664 1.882021e-01
## 694         24    30         20 2.325670e-02 0.8177502 0.4307057 5.399675e-02
## 695         26    22         24 5.835392e-02 0.8198302 0.4367849 1.335988e-01
## 696         22    26         22 1.912481e-02 0.8057143 0.4752765 4.023934e-02
## 697         24    26         22 2.370301e-03 0.8105710 0.4648602 5.098953e-03
## 698         26    22         22 1.108891e-01 0.8089796 0.4724549 2.347084e-01
## 699         20    28         22 2.295230e-02 0.8375510 0.3748228 6.123506e-02
## 700         26    28         20 1.854607e-02 0.8265157 0.4080050 4.545549e-02
## 701         22    28         22 3.073014e-02 0.8148148 0.4511142 6.812053e-02
## 702         18    28         24 3.527462e-02 0.8032653 0.4823425 7.313190e-02
## 703         26    28         22 5.642749e-02 0.8022853 0.4807704 1.173689e-01
## 704         24    26         22 4.902790e-02 0.7233796 0.7692308 6.373626e-02
## 705         24    28         20 4.910714e-03 0.8271605 0.4059168 1.209783e-02
## 706         22    28         20 1.254545e-01 0.8065306 0.4688995 2.675510e-01
## 707         20    26         26 3.706294e-02 0.8009259 0.4897732 7.567367e-02
## 708         24    22         24 4.591368e-04 0.7783673 0.5675820 8.089348e-04
## 709         22    28         22 5.052760e-02 0.8070988 0.4771548 1.058935e-01
## 710         26    24         24 2.576729e-02 0.8232286 0.4294644 5.999866e-02
## 711         26    30         20 5.921830e-02 0.8161357 0.4336151 1.365688e-01
## 712         24    26         20 4.328494e-02 0.8236735 0.4197130 1.031299e-01
## 713         24    26         20 2.990928e-02 0.8257143 0.4144929 7.215872e-02
## 714         24    24         22 2.556818e-02 0.8253061 0.4217022 6.063090e-02
## 715         22    24         24 8.358772e-02 0.8183673 0.4419255 1.891444e-01
## 716         24    28         18 1.160251e-03 0.8273469 0.3983309 2.912782e-03
## 717         20    28         24 2.689076e-02 0.8248457 0.4119471 6.527721e-02
## 718         20    26         26 4.807692e-03 0.8279321 0.4064091 1.182969e-02
## 719         24    24         24 5.934242e-02 0.8175154 0.4464370 1.329245e-01
## 720         22    24         24 4.420572e-02 0.8208163 0.4348884 1.016484e-01
## 721         24    26         22 3.057446e-02 0.8244599 0.4234254 7.220743e-02
## 722         22    24         24 3.424666e-02 0.8261224 0.4197846 8.158152e-02
## 723         16    30         24 1.512097e-03 0.7167347 0.7179670 2.106081e-03
## 724         24    30         24 9.421296e-02 0.7961867 0.5153179 1.828249e-01
## 725         30    30         20 4.761905e-02 0.7103125 0.7858924 6.059233e-02
## 726         18    28         24 6.850032e-02 0.8175510 0.4321712 1.585027e-01
## 727         20    26         26 2.075286e-02 0.8136574 0.4544261 4.566829e-02
## 728         26    22         22 5.194805e-03 0.8314286 0.4017495 1.293046e-02
## 729         28    22         24 6.805064e-03 0.8239591 0.4188753 1.624604e-02
## 730         24    26         20 2.219606e-02 0.7995918 0.4863909 4.563420e-02
## 731         24    26         24 3.978244e-02 0.8210373 0.4361712 9.120832e-02
## 732         24    26         24 1.990354e-02 0.8279766 0.4150549 4.795399e-02
## 733         26    24         20 3.806090e-02 0.8114286 0.4658044 8.171004e-02
## 734         24    28         20 6.015625e-02 0.8202160 0.4341486 1.385614e-01
## 735         22    24         24 1.327730e-02 0.7183673 0.7847150 1.691991e-02
## 736         24    26         20 7.799145e-04 0.8277551 0.4087455 1.908069e-03
## 737         20    28         24 2.067532e-02 0.8040123 0.4830820 4.279879e-02
## 738         22    26         24 1.398601e-02 0.8244599 0.4246329 3.293672e-02
## 739         20    26         24 9.849963e-02 0.7967347 0.4901350 2.009643e-01
## 740         20    26         24 9.849963e-02 0.7967347 0.4901350 2.009643e-01
## 741         20    26         24 9.849963e-02 0.7967347 0.4901350 2.009643e-01
## 742         26    22         22 6.976811e-02 0.8183673 0.4390771 1.588972e-01
## 743         20    26         24 1.382604e-03 0.8310204 0.3996524 3.459517e-03
## 744         26    24         20 2.879684e-03 0.7081633 0.8132195 3.541091e-03
## 745         26    22         24 1.501462e-01 0.7241512 0.7432780 2.020054e-01
## 746         22    24         26 1.032301e-02 0.8013117 0.4896755 2.108133e-02
## 747         18    28         26 9.821855e-02 0.7951389 0.5068861 1.937685e-01
## 748         28    26         24 1.600270e-01 0.7912558 0.5376135 2.976617e-01
## 749         22    26         24 1.242352e-02 0.7935957 0.5165340 2.405171e-02
## 750         22    28         20 5.681818e-02 0.7665306 0.6062542 9.372006e-02
## 751         28    28         20 1.341615e-02 0.8213296 0.4260178 3.149199e-02
## 752         18    30         22 1.026632e-03 0.8167347 0.4203858 2.442118e-03
## 753         22    28         22 1.292344e-01 0.8090278 0.4655816 2.775762e-01
## 754         22    24         24 7.828049e-03 0.8126531 0.4613069 1.696929e-02
## 755         22    28         24 1.856348e-02 0.8111760 0.4586854 4.047105e-02
## 756         20    30         24 4.827778e-02 0.7962016 0.4761162 1.013991e-01
## 757         24    22         24 5.497280e-02 0.8224490 0.4329837 1.269628e-01
## 758         28    26         18 4.473304e-02 0.8213735 0.4225324 1.058689e-01
## 759         22    26         22 1.066130e-01 0.8126531 0.4575063 2.330306e-01
## 760         26    28         24 1.000270e-01 0.7952005 0.5070425 1.972753e-01
## 761         24    26         22 1.954218e-02 0.8271605 0.4146520 4.712910e-02
## 762         24    26         20 1.418586e-02 0.8277551 0.4089004 3.469269e-02
## 763         20    28         26 6.944008e-03 0.7647918 0.6016394 1.154181e-02
## 764         28    30         22 7.832276e-03 0.8290625 0.4020067 1.948295e-02
## 765         24    24         24 7.585139e-02 0.8202160 0.4383819 1.730258e-01
## 766         22    24         24 4.536768e-02 0.8248980 0.4232528 1.071881e-01
## 767         22    26         24 3.642003e-02 0.7438272 0.6901351 5.277232e-02
## 768         24    28         24 3.321813e-02 0.7638504 0.6195981 5.361238e-02
## 769         28    22         22 9.660290e-03 0.7677469 0.5959016 1.621122e-02
## 770         22    26         22 5.818182e-02 0.8110204 0.4667612 1.246501e-01
## 771         24    26         24 3.987919e-02 0.8005844 0.4989151 7.993183e-02
## 772         26    26         22 4.723635e-02 0.7220599 0.7739777 6.103063e-02
## 773         22    26         22 7.773386e-02 0.8057143 0.4842037 1.605396e-01
## 774         24    24         24 1.458333e-01 0.7932099 0.5214008 2.796953e-01
## 775         26    26         18 6.185355e-02 0.8085714 0.4501827 1.373965e-01
## 776         22    28         22 1.411329e-01 0.7951389 0.5103499 2.765415e-01
## 777         24    26         20 6.151858e-02 0.8110204 0.4516472 1.362094e-01
## 778         28    22         20 3.527273e-02 0.8077551 0.4515825 7.810915e-02
## 779         24    26         24 1.948436e-02 0.8294375 0.4106544 4.744710e-02
## 780         22    24         24 2.094547e-02 0.8285714 0.4135319 5.065021e-02
## 781         22    30         22 3.240683e-02 0.8170197 0.4355346 7.440701e-02
## 782         22    26         22 2.169259e-02 0.8036735 0.4887363 4.438507e-02
## 783         26    30         26 1.072767e-01 0.7917906 0.5117186 2.096400e-01
## 784         26    30         24 1.297314e-02 0.8043750 0.4846293 2.676920e-02
## 785         18    26         26 3.669028e-03 0.8269388 0.4020047 9.126829e-03
## 786         22    22         26 4.601081e-02 0.8040816 0.4886231 9.416422e-02
## 787         26    28         24 5.341387e-02 0.7370151 0.7128998 7.492478e-02
## 788         24    24         22 7.485570e-03 0.8253061 0.4227513 1.770680e-02
## 789         20    28         24 1.233766e-02 0.7276235 0.7234964 1.705283e-02
## 790         22    30         24 1.422078e-02 0.7236842 0.7358678 1.932518e-02
## 791         22    26         26 6.869218e-02 0.8130022 0.4611301 1.489649e-01
## 792         24    22         24 4.591557e-03 0.8310204 0.4054928 1.132340e-02
## 793         26    26         18 1.360544e-02 0.7987755 0.4813490 2.826523e-02
## 794         22    26         22 3.895056e-02 0.8138776 0.4486256 8.682197e-02
## 795         28    24         18 4.277146e-02 0.8016327 0.4853191 8.813061e-02
## 796         20    30         24 1.635374e-02 0.8104456 0.4569776 3.578675e-02
## 797         26    24         22 8.094390e-02 0.8013117 0.5013114 1.614643e-01
## 798         24    28         18 1.002859e-01 0.8106122 0.4454935 2.251121e-01
## 799         24    24         22 5.803196e-02 0.8183673 0.4413965 1.314735e-01
## 800         22    28         20 1.421644e-01 0.8400000 0.3630842 3.915468e-01
## 801         24    24         22 1.676974e-01 0.7816327 0.5527732 3.033747e-01
## 802         22    30         22 7.068467e-03 0.8257852 0.4058220 1.741765e-02
## 803         18    30         22 1.497906e-01 0.7987755 0.4834446 3.098403e-01
## 804         26    24         22 8.189588e-02 0.8074846 0.4670346 1.753529e-01
## 805         24    28         22 3.807773e-02 0.7136596 0.7991483 4.764789e-02
## 806         26    26         18 7.860344e-02 0.7600000 0.5922499 1.327201e-01
## 807         24    24         24 3.906250e-02 0.8248457 0.4246960 9.197756e-02
## 808         26    18         26 3.076923e-02 0.7057143 0.8178138 3.762376e-02
## 809         28    26         16 8.396784e-03 0.8053061 0.4567040 1.838562e-02
## 810         22    28         20 7.670455e-02 0.8146939 0.4449126 1.724036e-01
## 811         18    30         22 1.146877e-02 0.8183673 0.4137837 2.771681e-02
## 812         26    30         18 7.214094e-02 0.7951059 0.4778928 1.509563e-01
## 813         22    30         18 1.559152e-02 0.8024490 0.4712435 3.308592e-02
## 814         28    26         22 1.843271e-02 0.8286011 0.4081063 4.516644e-02
## 815         22    26         22 7.072473e-03 0.8073469 0.4699032 1.505091e-02
## 816         22    22         26 5.645080e-02 0.8081633 0.4738998 1.191197e-01
## 817         24    22         26 3.402847e-03 0.7800926 0.5583823 6.094117e-03
## 818         22    28         20 1.891837e-02 0.7848980 0.5403252 3.501294e-02
## 819         26    30         22 1.436588e-02 0.8122945 0.4507413 3.187167e-02
## 820         26    18         26 9.496676e-03 0.8151020 0.4420049 2.148546e-02
## 821         22    26         22 9.965035e-03 0.8269388 0.4136022 2.409328e-02
## 822         22    26         24 1.845252e-02 0.7422840 0.6837009 2.698916e-02
## 823         20    28         22 2.811005e-02 0.8228571 0.4137807 6.793466e-02
## 824         20    28         22 1.322044e-02 0.8277551 0.4044289 3.268916e-02
## 825         26    22         26 9.914918e-02 0.7954711 0.5036635 1.968560e-01
## 826         18    28         24 1.184833e-01 0.7934694 0.4993856 2.372581e-01
## 827         20    28         26 4.402102e-03 0.8272462 0.4052786 1.086192e-02
## 828         22    28         20 5.285412e-03 0.8208163 0.4257267 1.241504e-02
## 829         24    28         24 8.166667e-02 0.8026316 0.4849727 1.683944e-01
## 830         28    26         22 2.444863e-02 0.8102493 0.4580270 5.337814e-02
## 831         24    24         24 3.645833e-02 0.8094136 0.4709247 7.741861e-02
## 832         22    28         20 3.538298e-02 0.7979592 0.4922809 7.187560e-02
## 833         22    22         26 2.980923e-02 0.8093878 0.4711164 6.327360e-02
## 834         18    30         22 2.336221e-02 0.8216327 0.4076131 5.731465e-02
## 835         26    30         18 3.880804e-03 0.8257852 0.3968655 9.778638e-03
## 836         24    22         24 6.870552e-02 0.8016327 0.4992633 1.376138e-01
## 837         24    26         22 8.043884e-03 0.8283179 0.4127731 1.948742e-02
## 838         22    26         22 5.217332e-02 0.8236735 0.4251041 1.227307e-01
## 839         18    26         26 1.194255e-01 0.7922449 0.5331730 2.239902e-01
## 840         20    26         24 1.699359e-02 0.7983673 0.4974405 3.416206e-02
## 841         22    28         24 5.887024e-03 0.8265157 0.4144266 1.420523e-02
## 842         24    30         24 5.932762e-03 0.8300460 0.4027723 1.472982e-02
## 843         26    24         22 1.872740e-02 0.8287037 0.4097746 4.570172e-02
## 844         20    30         22 1.768595e-02 0.7962963 0.4764799 3.711793e-02
## 845         24    28         18 1.588747e-02 0.7342857 0.6996788 2.270681e-02
## 846         22    22         26 4.520549e-02 0.8069388 0.4779298 9.458605e-02
## 847         24    30         22 4.460227e-02 0.8005540 0.4842836 9.209949e-02
## 848         24    26         20 9.558150e-03 0.7681633 0.5874036 1.627186e-02
## 849         26    22         22 1.918082e-02 0.8289796 0.4084178 4.696372e-02
## 850         28    24         24 1.205773e-03 0.8182133 0.4407936 2.735460e-03
## 851         22    24         26 1.740967e-02 0.8109568 0.4614919 3.772477e-02
## 852         26    22         22 5.034965e-02 0.7040816 0.8210804 6.132122e-02
## 853         26    26         24 4.385965e-02 0.7870499 0.5444347 8.055999e-02
## 854         24    24         24 2.110390e-02 0.8217593 0.4338028 4.864859e-02
## 855         26    26         18 8.216783e-02 0.6865306 0.8559407 9.599711e-02
## 856         28    26         24 1.330532e-02 0.8149244 0.4519247 2.944146e-02
## 857         22    28         20 2.548209e-02 0.6971429 0.8493719 3.000110e-02
## 858         24    26         22 5.706889e-02 0.8074846 0.4706431 1.212573e-01
## 859         28    28         24 1.845200e-02 0.8240625 0.4226845 4.365430e-02
## 860         22    26         22 7.690367e-02 0.8028571 0.4926959 1.560875e-01
## 861         22    22         26 8.602953e-02 0.8069388 0.4799106 1.792616e-01
## 862         26    24         20 6.021228e-02 0.8032653 0.4728020 1.273520e-01
## 863         26    24         20 6.021228e-02 0.8032653 0.4728020 1.273520e-01
## 864         26    28         20 9.626308e-03 0.8235939 0.4145596 2.322056e-02
## 865         26    26         20 2.742181e-02 0.7195216 0.7627222 3.595255e-02
## 866         22    28         22 7.000812e-02 0.8024691 0.4849276 1.443682e-01
## 867         26    22         24 5.062217e-02 0.6990741 0.8574885 5.903539e-02
## 868         28    24         24 9.299674e-02 0.7918975 0.5197285 1.789333e-01
## 869         26    26         24 3.381995e-02 0.7416898 0.6910209 4.894201e-02
## 870         20    24         26 1.135150e-03 0.7151020 0.7810707 1.453325e-03
## 871         26    24         22 2.931684e-03 0.7993827 0.4995410 5.868755e-03
## 872         26    24         20 3.919314e-03 0.8146939 0.4490616 8.727788e-03
## 873         28    24         18 3.696206e-02 0.7571429 0.6153040 6.007122e-02
## 874         20    30         22 1.015664e-03 0.8244599 0.4058451 2.502591e-03
## 875         20    28         22 1.199100e-01 0.7053061 0.8044245 1.490631e-01
## 876         24    24         22 3.404538e-02 0.7746939 0.5765678 5.904835e-02
## 877         24    24         22 6.791126e-02 0.7657143 0.6104704 1.112441e-01
## 878         18    26         26 5.115255e-03 0.6946939 0.8456818 6.048676e-03
## 879         18    30         22 5.516498e-02 0.8077551 0.4628907 1.191750e-01
## 880         24    26         24 2.165733e-02 0.8221329 0.4328133 5.003851e-02
## 881         22    26         24 5.827506e-04 0.8140432 0.4543466 1.282612e-03
## 882         26    26         20 9.210192e-02 0.8113426 0.4512894 2.040862e-01
## 883         26    26         20 9.210192e-02 0.8113426 0.4512894 2.040862e-01
## 884         20    28         24 5.228105e-02 0.8190586 0.4254761 1.228766e-01
## 885         20    26         24 1.073336e-01 0.8048980 0.4676594 2.295124e-01
## 886         26    28         26 2.780657e-02 0.8115625 0.4643016 5.988904e-02
## 887         20    28         24 1.400922e-02 0.7415123 0.6819385 2.054323e-02
## 888         26    24         20 5.358286e-02 0.8020408 0.4793502 1.117823e-01
## 889         26    22         22 6.209790e-02 0.8102041 0.4684434 1.325622e-01
## 890         22    26         24 2.211538e-02 0.8263889 0.4156432 5.320762e-02
## 891         20    26         24 4.208473e-02 0.8044898 0.4746289 8.866870e-02
## 892         26    28         20 1.183281e-02 0.7611395 0.6016984 1.966568e-02
## 893         24    26         20 8.146368e-03 0.8130612 0.4502980 1.809106e-02
## 894         18    28         26 4.203733e-02 0.7476852 0.6263056 6.711952e-02
## 895         24    24         22 1.025562e-02 0.8044898 0.4832841 2.122068e-02
## 896         26    28         18 1.562778e-02 0.8105710 0.4494825 3.476838e-02
## 897         18    26         26 9.811033e-02 0.8102041 0.4506879 2.176902e-01
## 898         20    26         26 4.695305e-03 0.8217593 0.4243120 1.106569e-02
## 899         24    28         20 4.820542e-02 0.7820216 0.5271548 9.144452e-02
## 900         22    30         20 1.781704e-01 0.7966821 0.4941669 3.605470e-01
## 901         26    28         22 1.166206e-02 0.8112881 0.4621721 2.523316e-02
## 902         28    18         24 4.083571e-02 0.7869388 0.5343476 7.642161e-02
## 903         28    18         24 4.083571e-02 0.7869388 0.5343476 7.642161e-02
## 904         28    20         22 6.435529e-03 0.7689796 0.5865422 1.097198e-02
## 905         22    28         24 9.542208e-02 0.7947407 0.5011519 1.904055e-01
## 906         22    26         22 9.946032e-02 0.7975510 0.4911997 2.024845e-01
## 907         24    26         20 3.488575e-03 0.8036735 0.4792228 7.279651e-03
## 908         22    26         22 7.264729e-02 0.8142857 0.4473071 1.624103e-01
## 909         28    24         22 9.474033e-03 0.8151936 0.4461575 2.123473e-02
## 910         24    28         20 4.910714e-02 0.7283951 0.7421308 6.617047e-02
## 911         22    26         24 5.977356e-03 0.8271605 0.4158262 1.437465e-02
## 912         22    26         22 2.009794e-01 0.7808163 0.5484886 3.664240e-01
## 913         22    28         24 3.222912e-02 0.7067202 0.8274517 3.894985e-02
## 914         22    26         22 6.115342e-03 0.7644898 0.6067974 1.007806e-02
## 915         24    24         22 3.533692e-02 0.8261224 0.4204396 8.404756e-02
## 916         24    28         20 6.704090e-02 0.8159722 0.4499291 1.490033e-01
## 917         24    26         22 6.218055e-02 0.7962963 0.5001931 1.243131e-01
## 918         22    26         22 7.061470e-02 0.8114286 0.4651827 1.517999e-01
## 919         20    28         22 6.732166e-02 0.8142857 0.4441331 1.515799e-01
## 920         26    22         22 1.493472e-01 0.7959184 0.5009503 2.981277e-01
## 921         26    26         22 7.549176e-02 0.8195763 0.4363960 1.729891e-01
## 922         30    24         24 6.271186e-03 0.7587114 0.6189558 1.013188e-02
## 923         24    26         22 2.877331e-02 0.8086420 0.4661960 6.171934e-02
## 924         24    28         22 4.304709e-02 0.8075237 0.4698022 9.162811e-02
## 925         26    26         22 3.655041e-02 0.8159240 0.4445286 8.222284e-02
## 926         26    24         24 5.021046e-02 0.7428780 0.6899409 7.277501e-02
## 927         22    26         24 3.425938e-02 0.8009259 0.4882877 7.016227e-02
## 928         24    28         20 5.035866e-02 0.8097994 0.4683999 1.075121e-01
## 929         24    26         20 3.307692e-02 0.8257143 0.4144929 7.980093e-02
## 930         20    26         24 2.029915e-02 0.8244898 0.4179995 4.856261e-02
## 931         22    26         26 3.333940e-02 0.8140979 0.4496670 7.414241e-02
## 932         20    24         26 4.578755e-03 0.8306122 0.4007907 1.142430e-02
## 933         26    26         18 1.261132e-02 0.8146939 0.4340818 2.905286e-02
## 934         28    26         20 2.295604e-02 0.8049671 0.4680341 4.904780e-02
## 935         20    28         22 9.881763e-02 0.8069388 0.4707776 2.099030e-01
## 936         22    26         24 2.797203e-03 0.8213735 0.4309059 6.491447e-03
## 937         22    28         20 1.757129e-01 0.7987755 0.4857156 3.617609e-01
## 938         26    24         20 2.180359e-04 0.8044898 0.4780438 4.561003e-04
## 939         22    28         20 6.145640e-03 0.8212245 0.4190990 1.466393e-02
## 940         20    26         24 1.728480e-02 0.8212245 0.4256098 4.061184e-02
## 941         22    28         20 8.640339e-02 0.7955102 0.5176547 1.669132e-01
## 942         22    24         24 3.974359e-02 0.7097959 0.8205386 4.843598e-02
## 943         26    28         20 7.366587e-02 0.7363039 0.7059257 1.043536e-01
## 944         26    28         20 7.366587e-02 0.7363039 0.7059257 1.043536e-01
## 945         24    22         24 8.215488e-03 0.8183673 0.4435124 1.852369e-02
## 946         24    26         20 3.155774e-02 0.8097959 0.4611087 6.843882e-02
## 947         22    28         26 1.758325e-02 0.8261773 0.4099735 4.288876e-02
## 948         26    24         22 1.929888e-03 0.8240741 0.4243341 4.548040e-03
## 949         26    24         22 1.412563e-01 0.7874228 0.5258186 2.686407e-01
## 950         26    24         22 1.412563e-01 0.7874228 0.5258186 2.686407e-01
## 951         18    28         24 8.888889e-03 0.7967347 0.4922587 1.805735e-02
## 952         26    22         24 3.335126e-02 0.8163580 0.4536333 7.352031e-02
## 953         26    22         22 7.402122e-02 0.7922449 0.5091024 1.453955e-01
## 954         18    28         24 3.356481e-02 0.7689796 0.5567941 6.028228e-02
## 955         22    24         24 3.179522e-02 0.7004082 0.8510454 3.736020e-02
## 956         26    26         22 2.292048e-02 0.7972973 0.5018371 4.567314e-02
## 957         24    26         20 7.906590e-02 0.7942857 0.5002536 1.580516e-01
## 958         24    30         24 1.471380e-02 0.8254438 0.4173039 3.525921e-02
## 959         26    28         24 5.199461e-02 0.8030901 0.4858342 1.070213e-01
## 960         28    28         22 6.624688e-03 0.8267587 0.4134543 1.602278e-02
## 961         22    26         22 7.342657e-02 0.8138776 0.4535354 1.618982e-01
## 962         18    28         24 2.171605e-01 0.7881633 0.5439179 3.992523e-01
## 963         18    30         22 1.420428e-02 0.8175510 0.4148222 3.424185e-02
## 964         20    28         22 7.633183e-02 0.7889796 0.5083008 1.501706e-01
## 965         16    30         24 5.042614e-02 0.7869388 0.4799015 1.050760e-01
## 966         18    30         24 1.315156e-02 0.8190586 0.4203486 3.128728e-02
## 967         26    24         20 2.803953e-02 0.8236735 0.4220255 6.644037e-02
## 968         26    28         24 2.450397e-02 0.8191979 0.4363105 5.616177e-02
## 969         24    28         18 2.328987e-02 0.8195918 0.4279825 5.441781e-02
## 970         24    26         22 5.706889e-02 0.8074846 0.4706431 1.212573e-01
## 971         20    28         22 1.038642e-02 0.8273469 0.4038884 2.571606e-02
## 972         26    28         16 2.924943e-02 0.8204082 0.4127201 7.086990e-02
## 973         20    28         22 3.114233e-02 0.8012245 0.4921271 6.328107e-02
## 974         24    30         26 4.363195e-02 0.7646875 0.6201104 7.036158e-02
## 975         30    26         22 3.770335e-02 0.8244576 0.4167899 9.046128e-02
## 976         20    26         24 4.155904e-02 0.8232653 0.4198035 9.899642e-02
## 977         22    26         24 9.324009e-03 0.8132716 0.4586059 2.033120e-02
## 978         20    28         24 1.145879e-01 0.7847222 0.5472819 2.093764e-01
## 979         22    28         20 3.440630e-02 0.8191837 0.4279567 8.039669e-02
## 980         20    26         24 3.326482e-02 0.8106122 0.4626004 7.190832e-02
## 981         24    28         22 8.608606e-02 0.7837838 0.5400619 1.594003e-01
## 982         22    30         26 3.993528e-02 0.8234714 0.4185955 9.540302e-02
## 983         22    30         18 2.765416e-02 0.8073469 0.4376321 6.319043e-02
## 984         22    28         24 2.005171e-02 0.8283419 0.4089201 4.903576e-02
## 985         24    24         22 6.988479e-02 0.8036735 0.4893578 1.428092e-01
## 986         20    28         24 4.538939e-04 0.8171296 0.4355726 1.042063e-03
## 987         26    26         20 1.172616e-02 0.8074846 0.4678525 2.506380e-02
## 988         22    28         22 7.886156e-02 0.8028549 0.4798954 1.643307e-01
## 989         24    28         26 1.113904e-02 0.7557528 0.6455757 1.725443e-02
## 990         26    26         18 4.007816e-02 0.8204082 0.4192712 9.559007e-02
## 991         22    30         24 1.338117e-02 0.8244460 0.4120067 3.247804e-02
## 992         26    24         22 7.102273e-03 0.8294753 0.4088795 1.737009e-02
## 993         26    24         22 7.102273e-03 0.8294753 0.4088795 1.737009e-02
## 994         22    26         22 1.989122e-02 0.8142857 0.4473071 4.446882e-02
## 995         22    26         24 4.229932e-02 0.8059414 0.4833276 8.751687e-02
## 996         24    30         16 6.828704e-02 0.7657143 0.5708955 1.196139e-01
## 997         20    26         24 8.512123e-02 0.7906122 0.5139854 1.656102e-01
## 998         20    28         24 5.914955e-02 0.8101852 0.4641633 1.274326e-01
## 999         24    26         26 3.032544e-02 0.8116343 0.4622112 6.560949e-02
## 1000        22    22         26 3.481800e-03 0.8265306 0.4148839 8.392228e-03
## 1001        22    30         20 2.949225e-02 0.8070988 0.4451590 6.625103e-02
## 1002        20    28         24 1.921677e-02 0.8267747 0.4073195 4.717861e-02
## 1003        28    22         24 1.342061e-02 0.8137327 0.4473738 2.999864e-02
## 1004        22    28         20 3.622727e-02 0.7934694 0.5042321 7.184642e-02
## 1005        18    30         24 2.553191e-03 0.8090278 0.4411063 5.788154e-03
## 1006        24    24         22 7.975350e-02 0.8000000 0.5041937 1.581803e-01
## 1007        26    22         22 9.370282e-04 0.8297959 0.4058696 2.308693e-03
## 1008        26    26         18 2.371961e-02 0.8151020 0.4324179 5.485344e-02
## 1009        26    20         24 3.661616e-02 0.6955102 0.8507433 4.304020e-02
## 1010        24    26         20 5.864703e-02 0.8061224 0.4847582 1.209820e-01
## 1011        20    30         22 3.181818e-01 0.7098765 0.7332016 4.339623e-01
## 1012        22    26         22 6.976539e-02 0.8167347 0.4472519 1.559868e-01
## 1013        26    26         18 1.021432e-02 0.8024490 0.4683552 2.180892e-02
## 1014        22    22         26 1.626794e-01 0.8057143 0.4842037 3.359731e-01
## 1015        18    30         22 1.525673e-02 0.7044898 0.7809146 1.953701e-02
## 1016        30    24         16 7.189764e-02 0.7902041 0.4707515 1.527295e-01
## 1017        22    28         20 5.260943e-03 0.7787755 0.5495521 9.573146e-03
## 1018        18    26         26 3.415566e-03 0.8057143 0.4668728 7.315839e-03
## 1019        24    28         18 2.720903e-02 0.8232653 0.4111166 6.618323e-02
## 1020        24    30         20 6.378788e-02 0.8122717 0.4443345 1.435582e-01
## 1021        26    28         22 1.612176e-02 0.7396122 0.6959927 2.316369e-02
## 1022        22    26         24 1.611722e-02 0.8248457 0.4201626 3.835947e-02
## 1023        22    28         20 3.861317e-02 0.8163265 0.4347045 8.882625e-02
## 1024        22    26         22 3.929964e-02 0.8216327 0.4325520 9.085529e-02
## 1025        26    22         24 1.821635e-02 0.8198302 0.4386508 4.152814e-02
## 1026        24    28         20 1.040211e-02 0.8229167 0.4214587 2.468120e-02
## 1027        22    26         22 3.373302e-02 0.8248980 0.4219610 7.994344e-02
## 1028        20    26         26 3.796204e-02 0.8155864 0.4393421 8.640655e-02
## 1029        28    26         16 5.011655e-02 0.7902041 0.4818818 1.040018e-01
## 1030        26    26         20 1.800012e-02 0.8229167 0.4259007 4.226366e-02
## 1031        18    30         26 2.730015e-03 0.8246896 0.3993414 6.836294e-03
## 1032        18    28         24 1.390026e-02 0.8257143 0.4048306 3.433600e-02
## 1033        24    26         20 2.118332e-03 0.7591837 0.6265991 3.380681e-03
## 1034        24    26         20 2.079034e-02 0.8093878 0.4661999 4.459534e-02
## 1035        26    26         24 1.194743e-03 0.8272161 0.4167713 2.866664e-03
## 1036        28    26         22 6.731620e-04 0.8258310 0.4154881 1.620172e-03
## 1037        24    28         20 5.483631e-02 0.8047840 0.4780304 1.147130e-01
## 1038        24    28         24 4.737750e-02 0.8164820 0.4424856 1.070713e-01
## 1039        28    22         24 2.261929e-02 0.8243243 0.4227521 5.350486e-02
## 1040        28    24         26 3.463123e-02 0.8099934 0.4703009 7.363633e-02
## 1041        24    24         24 8.857809e-02 0.8175154 0.4464370 1.984112e-01
## 1042        24    28         18 1.471591e-01 0.7979592 0.4813157 3.057435e-01
## 1043        22    28         20 1.206165e-02 0.8273469 0.4048975 2.978939e-02
## 1044        20    26         24 1.252530e-02 0.8277551 0.4079047 3.070644e-02
## 1045        22    28         24 3.805984e-02 0.8221329 0.4303571 8.843782e-02
## 1046        20    28         24 1.755069e-02 0.8221451 0.4250989 4.128614e-02
## 1047        22    26         22 8.232594e-02 0.8102041 0.4632647 1.777082e-01
## 1048        20    26         24 2.656503e-02 0.8265306 0.4130548 6.431357e-02
## 1049        26    24         20 5.633256e-02 0.7702041 0.5874268 9.589715e-02
## 1050        22    28         24 3.946158e-02 0.8071585 0.4784407 8.247957e-02
## 1051        24    24         22 6.524820e-02 0.8114286 0.4620945 1.412010e-01
## 1052        24    28         24 2.784283e-03 0.7711219 0.5902773 4.716907e-03
## 1053        20    26         26 1.129808e-02 0.8101852 0.4576264 2.468843e-02
## 1054        26    28         20 7.333666e-02 0.8115413 0.4495069 1.631491e-01
## 1055        22    28         22 1.867919e-03 0.8144290 0.4444315 4.202941e-03
## 1056        28    28         22 5.159091e-02 0.8099934 0.4611312 1.118790e-01
## 1057        24    28         20 3.523894e-03 0.8067130 0.4629227 7.612273e-03
## 1058        30    22         24 1.054494e-01 0.8116343 0.4626590 2.279203e-01
## 1059        26    28         22 5.741802e-03 0.8168283 0.4423893 1.297907e-02
## 1060        28    24         22 2.907600e-02 0.8250548 0.4184771 6.948050e-02
## 1061        18    28         26 6.405424e-02 0.7997685 0.4694953 1.364321e-01
## 1062        24    24         22 1.410021e-02 0.8257143 0.4205463 3.352832e-02
## 1063        26    30         22 1.623574e-01 0.7692308 0.6234188 2.604307e-01
## 1064        26    30         16 1.689165e-01 0.7735340 0.5129561 3.293002e-01
## 1065        20    28         24 4.740260e-02 0.8148148 0.4443182 1.066862e-01
## 1066        22    30         20 1.207632e-02 0.8144290 0.4313940 2.799371e-02
## 1067        20    26         24 7.483935e-02 0.8175510 0.4415780 1.694816e-01
## 1068        20    30         20 9.831155e-02 0.8089796 0.4431551 2.218446e-01
## 1069        22    26         24 2.251113e-02 0.8040123 0.4840510 4.650569e-02
## 1070        24    28         20 9.523810e-03 0.8086420 0.4556161 2.090314e-02
## 1071        20    26         24 1.737673e-02 0.7081633 0.8159351 2.129670e-02
## 1072        28    26         18 1.221657e-01 0.8082562 0.4774896 2.558500e-01
## 1073        26    24         20 7.517911e-02 0.8195918 0.4362646 1.723246e-01
## 1074        20    26         26 6.063802e-02 0.8070988 0.4629651 1.309775e-01
## 1075        22    22         26 6.209790e-02 0.8102041 0.4684434 1.325622e-01
## 1076        22    28         22 3.353363e-02 0.7064043 0.8231752 4.073693e-02
## 1077        22    26         22 1.261753e-01 0.8036735 0.4847585 2.602848e-01
## 1078        24    26         22 4.481233e-02 0.8036265 0.4831990 9.274094e-02
## 1079        28    30         24 2.071051e-02 0.8114218 0.4572266 4.529593e-02
## 1080        24    22         24 5.358495e-02 0.8167347 0.4508806 1.188451e-01
## 1081        22    26         22 8.171681e-02 0.8183673 0.4407861 1.853888e-01
## 1082        20    26         24 2.217363e-02 0.8183673 0.4337873 5.111637e-02
## 1083        28    24         20 1.023548e-01 0.7202932 0.7812380 1.310161e-01
## 1084        24    26         24 2.913367e-02 0.8268809 0.4167941 6.989944e-02
## 1085        24    26         24 1.308918e-02 0.8298028 0.4092435 3.198384e-02
## 1086        24    30         22 3.115724e-03 0.8265235 0.4073822 7.648160e-03
## 1087        20    30         26 9.161381e-03 0.8244460 0.4094918 2.237256e-02
## 1088        20    30         20 1.615338e-02 0.8081633 0.4514310 3.578262e-02
## 1089        24    24         24 4.954368e-02 0.7604167 0.6301370 7.862366e-02
## 1090        20    28         22 3.534091e-02 0.8212245 0.4246566 8.322232e-02
## 1091        26    28         18 5.351791e-03 0.8186728 0.4225228 1.266628e-02
## 1092        22    26         22 4.270548e-02 0.8106122 0.4678484 9.128061e-02
## 1093        24    28         24 2.007326e-02 0.8130194 0.4574511 4.388067e-02
## 1094        26    26         22 1.450021e-02 0.7136596 0.7942252 1.825705e-02
## 1095        22    26         22 2.664003e-03 0.8253061 0.4199470 6.343664e-03
## 1096        24    22         24 2.033730e-02 0.8228571 0.4285301 4.745828e-02
## 1097        22    26         22 2.159657e-02 0.8240816 0.4238129 5.095779e-02
## 1098        28    24         22 3.946158e-02 0.8071585 0.4784407 8.247957e-02
## 1099        26    28         20 1.497907e-02 0.8239591 0.4131790 3.625322e-02
## 1100        28    26         16 5.243141e-02 0.7848980 0.4929547 1.063615e-01
## 1101        24    22         26 4.540965e-02 0.7511574 0.6563083 6.918952e-02
## 1102        26    24         20 1.795502e-03 0.8306122 0.4010773 4.476698e-03
## 1103        24    26         20 1.940579e-02 0.7808163 0.5494290 3.531993e-02
## 1104        24    28         18 1.714853e-02 0.8179592 0.4232369 4.051756e-02
## 1105        22    30         18 9.565350e-03 0.7991837 0.4658330 2.053386e-02
## 1106        24    22         24 2.576905e-02 0.8065306 0.4793584 5.375739e-02
## 1107        22    26         22 8.734123e-02 0.7955102 0.5181499 1.685636e-01
## 1108        22    26         24 6.295072e-02 0.7299383 0.7464222 8.433662e-02
## 1109        26    28         18 3.988668e-02 0.8179012 0.4203089 9.489847e-02
## 1110        24    28         18 4.916667e-02 0.7918367 0.5098797 9.642797e-02
## 1111        22    28         20 1.111894e-02 0.8191837 0.4279567 2.598146e-02
## 1112        20    28         24 2.579906e-02 0.8198302 0.4283160 6.023371e-02
## 1113        24    26         22 5.403687e-02 0.7145062 0.7977314 6.773818e-02
## 1114        22    28         24 7.588197e-04 0.8235939 0.4217252 1.799323e-03
## 1115        24    26         20 5.611722e-02 0.8216327 0.4256054 1.318527e-01
## 1116        22    28         20 1.932591e-04 0.8228571 0.4167794 4.636964e-04
## 1117        22    26         22 1.354511e-01 0.7987755 0.4871021 2.780754e-01
## 1118        24    28         20 1.047987e-02 0.8283179 0.4031539 2.599471e-02
## 1119        26    24         20 2.597259e-02 0.7575510 0.6347397 4.091849e-02
## 1120        22    24         24 2.203283e-02 0.7461224 0.6790042 3.244874e-02
## 1121        22    28         20 3.166278e-02 0.7828571 0.5274434 6.003068e-02
## 1122        22    24         26 6.509540e-02 0.8121142 0.4603757 1.413962e-01
## 1123        24    26         22 3.698225e-02 0.8132716 0.4536199 8.152695e-02
## 1124        20    26         24 4.694631e-02 0.7832653 0.5396140 8.699981e-02
## 1125        24    24         24 1.170569e-02 0.8186728 0.4429783 2.642496e-02
## 1126        20    30         20 2.000000e-02 0.8110204 0.4451434 4.492934e-02
## 1127        20    30         20 1.754386e-02 0.8228571 0.4074074 4.306220e-02
## 1128        28    30         18 3.137973e-03 0.8074792 0.4442879 7.062927e-03
## 1129        28    30         14 3.220779e-03 0.7893519 0.4640972 6.939881e-03
## 1130        24    28         18 1.347094e-02 0.7746939 0.5509162 2.445188e-02
## 1131        24    26         20 3.410082e-02 0.7995918 0.4926441 6.921999e-02
## 1132        24    26         20 5.320077e-03 0.8044898 0.4807074 1.106718e-02
## 1133        24    26         20 2.318551e-02 0.8020408 0.4835062 4.795286e-02
## 1134        24    30         16 8.157568e-02 0.8044898 0.4366438 1.868243e-01
## 1135        22    28         20 2.556818e-02 0.7689796 0.5945040 4.300759e-02
## 1136        26    26         26 4.166667e-03 0.8238001 0.4277733 9.740361e-03
## 1137        24    28         24 6.516291e-02 0.8213296 0.4309002 1.512251e-01
## 1138        24    28         22 1.781697e-02 0.8217677 0.4237860 4.204238e-02
## 1139        20    24         26 1.411258e-01 0.7036735 0.8086962 1.745103e-01
## 1140        24    26         26 1.603865e-02 0.8625346 0.3186137 5.033885e-02
## 1141        22    28         24 1.276700e-01 0.8002191 0.4804241 2.657443e-01
## 1142        24    24         24 2.258065e-02 0.7445988 0.6860104 3.291590e-02
## 1143        26    28         18 5.339105e-02 0.7052469 0.7949359 6.716397e-02
## 1144        26    26         26 1.315789e-03 0.8330046 0.4009471 3.281703e-03
## 1145        20    28         24 1.880798e-02 0.8202160 0.4314071 4.359682e-02
## 1146        20    26         24 1.162239e-02 0.8208163 0.4293852 2.706751e-02
## 1147        18    26         26 1.825688e-02 0.7971429 0.4827375 3.781947e-02
## 1148        22    24         24 6.265993e-02 0.8110204 0.4692966 1.335188e-01
## 1149        24    24         22 6.024531e-02 0.8163265 0.4474242 1.346492e-01
## 1150        24    24         22 8.766628e-02 0.7326531 0.7209631 1.215961e-01
## 1151        24    28         20 7.860336e-02 0.7426698 0.6788275 1.157928e-01
## 1152        24    24         24 4.405980e-02 0.8229167 0.4303797 1.023742e-01
## 1153        22    26         24 6.270032e-02 0.8040123 0.4818766 1.301170e-01
## 1154        24    24         22 2.733586e-02 0.8253061 0.4227513 6.466180e-02
## 1155        18    28         24 1.839860e-02 0.8053061 0.4621839 3.980797e-02
## 1156        28    24         20 2.322188e-02 0.8128858 0.4552851 5.100515e-02
## 1157        26    26         18 9.034803e-03 0.8248980 0.4071861 2.218839e-02
## 1158        24    28         20 4.009324e-02 0.8236883 0.4213583 9.515237e-02
## 1159        20    30         22 1.096325e-01 0.7920525 0.4904131 2.235513e-01
## 1160        24    26         22 1.730656e-02 0.8209877 0.4310722 4.014770e-02
## 1161        28    20         24 4.419467e-02 0.8198302 0.4283160 1.031824e-01
## 1162        28    24         22 1.286832e-03 0.7483565 0.6622215 1.943206e-03
## 1163        24    24         22 2.576905e-02 0.8065306 0.4793584 5.375739e-02
## 1164        22    26         22 2.751426e-02 0.8183673 0.4368798 6.297901e-02
## 1165        20    30         20 0.000000e+00 0.7987755 0.4741952 0.000000e+00
## 1166        22    30         18 2.473717e-03 0.7971429 0.4744216 5.214174e-03
## 1167        26    30         20 9.609467e-02 0.7950139 0.4882069 1.968319e-01
## 1168        22    28         20 3.051825e-02 0.8032653 0.4797903 6.360748e-02
## 1169        22    24         26 1.200035e-02 0.8198302 0.4350967 2.758087e-02
## 1170        24    28         20 4.298942e-03 0.8294753 0.3998007 1.075271e-02
## 1171        24    24         22 1.437848e-02 0.8044898 0.4854366 2.961969e-02
## 1172        20    26         24 2.014652e-02 0.8028571 0.4874076 4.133403e-02
## 1173        24    30         18 2.278245e-02 0.7951389 0.4921883 4.628807e-02
## 1174        26    28         18 1.604379e-02 0.8244599 0.4074162 3.937935e-02
## 1175        20    26         24 1.036686e-01 0.6991837 0.8299430 1.249106e-01
## 1176        26    26         22 1.951842e-02 0.8053324 0.4784105 4.079848e-02
## 1177        28    26         22 3.391480e-02 0.8258310 0.4154881 8.162642e-02
## 1178        24    26         26 9.019608e-03 0.8119806 0.4611940 1.955708e-02
## 1179        22    24         24 8.869464e-02 0.7048980 0.8285036 1.070540e-01
## 1180        20    30         24 6.105006e-03 0.8272462 0.4010302 1.522331e-02
## 1181        24    22         24 3.211032e-02 0.8277551 0.4158299 7.721984e-02
## 1182        22    24         26 1.957502e-02 0.8290895 0.4091902 4.783844e-02
## 1183        20    24         26 7.218216e-02 0.7951020 0.4970351 1.452255e-01
## 1184        24    28         20 1.146218e-01 0.7727623 0.5867057 1.953652e-01
## 1185        22    26         22 6.581654e-03 0.8310204 0.4027780 1.634065e-02
## 1186        24    30         20 7.317073e-03 0.8250548 0.4054449 1.804702e-02
## 1187        22    28         20 1.545229e-02 0.8257143 0.4116074 3.754133e-02
## 1188        20    26         24 5.364774e-02 0.8146939 0.4424297 1.212571e-01
## 1189        28    24         18 2.775385e-03 0.8183673 0.4225547 6.568108e-03
## 1190        26    26         22 9.390609e-03 0.7677137 0.6041333 1.554394e-02
## 1191        18    30         24 3.054545e-02 0.7939815 0.4818270 6.339506e-02
## 1192        24    28         22 1.424549e-02 0.8067933 0.4765550 2.989264e-02
## 1193        24    26         26 7.779789e-02 0.8015928 0.4920917 1.580963e-01
## 1194        26    22         24 4.346095e-02 0.8190586 0.4381516 9.919158e-02
## 1195        30    26         18 2.047800e-02 0.7852447 0.5079610 4.031411e-02
## 1196        24    28         22 2.643371e-02 0.8162893 0.4472234 5.910626e-02
## 1197        28    22         20 1.198123e-02 0.8097959 0.4502154 2.661221e-02
## 1198        22    26         22 3.559435e-02 0.8216327 0.4303635 8.270764e-02
## 1199        28    28         20 7.170868e-04 0.8092105 0.4548200 1.576639e-03
## 1200        24    28         20 1.701727e-02 0.7218364 0.7609529 2.236310e-02
## 1201        22    28         20 4.848485e-02 0.8085714 0.4596393 1.054846e-01
## 1202        22    24         24 9.688181e-02 0.8163265 0.4472917 2.165965e-01
## 1203        18    28         24 3.116531e-02 0.8175510 0.4248904 7.334905e-02
## 1204        22    28         20 1.067493e-01 0.7934694 0.5147774 2.073698e-01
## 1205        24    28         18 2.803076e-02 0.7277551 0.7007229 4.000264e-02
## 1206        22    28         22 9.240107e-03 0.8595679 0.3187414 2.898935e-02
## 1207        20    30         20 4.722222e-02 0.7338776 0.6820541 6.923530e-02
## 1208        26    26         20 3.912088e-02 0.8209877 0.4310584 9.075540e-02
## 1209        28    20         22 1.503030e-02 0.8151020 0.4451222 3.376669e-02
## 1210        26    28         16 4.281851e-03 0.7061224 0.7789851 5.496705e-03
## 1211        28    24         18 5.608394e-02 0.8016327 0.4694077 1.194781e-01
## 1212        22    26         22 5.318366e-02 0.8212245 0.4277691 1.243280e-01
## 1213        22    30         24 3.600713e-03 0.8099030 0.4568580 7.881471e-03
## 1214        24    26         20 6.717949e-03 0.8159184 0.4409993 1.523347e-02
## 1215        26    24         20 1.612941e-03 0.8118367 0.4573874 3.526423e-03
## 1216        18    30         24 2.508361e-03 0.8117284 0.4329848 5.793185e-03
## 1217        18    28         24 6.985328e-03 0.8224490 0.4140474 1.687084e-02
## 1218        20    28         22 5.685791e-02 0.8114286 0.4572663 1.243431e-01
## 1219        20    24         26 1.860256e-01 0.8016327 0.5026633 3.700800e-01
## 1220        22    28         20 1.113173e-01 0.8065306 0.4711078 2.362883e-01
## 1221        26    24         22 7.770008e-03 0.8213735 0.4337438 1.791382e-02
## 1222        18    30         26 1.482152e-02 0.8232286 0.4055711 3.654481e-02
## 1223        24    28         22 1.898379e-02 0.8265157 0.4134711 4.591322e-02
## 1224        22    28         22 2.015308e-02 0.7993827 0.4840671 4.163283e-02
## 1225        20    26         24 3.704478e-02 0.8114286 0.4652402 7.962507e-02
## 1226        22    28         20 9.787800e-04 0.8208163 0.4232404 2.312587e-03
## 1227        26    26         18 7.422131e-02 0.8069388 0.4563333 1.626471e-01
## 1228        28    28         22 1.783578e-02 0.8284024 0.4075835 4.375983e-02
## 1229        26    28         20 1.393991e-02 0.8005844 0.4853774 2.871973e-02
## 1230        20    28         22 5.681818e-03 0.7795918 0.5502142 1.032656e-02
## 1231        22    30         20 1.179884e-02 0.7577160 0.6216256 1.898062e-02
## 1232        16    28         26 6.250000e-02 0.8048980 0.4409229 1.417481e-01
## 1233        26    30         22 1.384541e-01 0.8080210 0.4756417 2.910890e-01
## 1234        28    26         24 5.615681e-02 0.8201841 0.4382336 1.281435e-01
## 1235        24    26         22 4.662005e-03 0.8317901 0.4016892 1.160600e-02
## 1236        22    28         22 1.533872e-01 0.8074846 0.4761760 3.221228e-01
## 1237        20    26         24 4.831116e-02 0.8061224 0.4791009 1.008371e-01
## 1238        20    28         24 3.027719e-02 0.7064043 0.8225794 3.680762e-02
## 1239        26    24         20 7.649836e-02 0.7473469 0.6726638 1.137245e-01
## 1240        24    22         26 3.528387e-03 0.7916667 0.5207030 6.776198e-03
## 1241        22    26         22 3.096903e-02 0.8212245 0.4336081 7.142170e-02
## 1242        22    28         22 2.355237e-02 0.8244599 0.4192490 5.617753e-02
## 1243        22    28         22 2.355237e-02 0.8244599 0.4192490 5.617753e-02
## 1244        24    24         26 1.177642e-01 0.8086194 0.4740057 2.484446e-01
## 1245        24    26         20 6.510417e-03 0.8293878 0.4054708 1.605644e-02
## 1246        20    28         22 2.345614e-02 0.7963265 0.4849494 4.836821e-02
## 1247        20    28         24 1.878122e-02 0.8260031 0.4101688 4.578900e-02
## 1248        24    20         26 1.802851e-02 0.8232653 0.4211383 4.280900e-02
## 1249        28    20         24 3.523894e-03 0.8067130 0.4629227 7.612273e-03
## 1250        22    30         24 9.250733e-02 0.7621191 0.5864538 1.577402e-01
## 1251        20    28         24 4.406308e-04 0.8217593 0.4218511 1.044517e-03
## 1252        28    26         22 6.097598e-02 0.8130194 0.4481034 1.360757e-01
## 1253        26    30         20 2.323033e-03 0.7538089 0.6246682 3.718827e-03
## 1254        24    26         26 1.639217e-01 0.7856648 0.5508244 2.975933e-01
## 1255        24    26         22 1.003307e-02 0.7700617 0.5972680 1.679827e-02
## 1256        26    28         20 8.476000e-03 0.8162893 0.4370273 1.939467e-02
## 1257        22    30         20 4.297521e-03 0.7797068 0.5393460 7.968022e-03
## 1258        22    28         26 1.272877e-02 0.8147507 0.4448959 2.861066e-02
## 1259        22    28         22 4.929853e-02 0.8109568 0.4590680 1.073883e-01
## 1260        26    26         18 1.018100e-02 0.8269388 0.4020047 2.532556e-02
## 1261        26    26         18 5.448808e-03 0.8232653 0.4137227 1.317019e-02
## 1262        26    26         18 8.361823e-02 0.7355102 0.6948784 1.203351e-01
## 1263        26    26         18 4.466501e-02 0.8200000 0.4250871 1.050726e-01
## 1264        26    26         18 8.140008e-04 0.8020408 0.4767621 1.707352e-03
## 1265        22    28         22 3.631063e-02 0.8059414 0.4800967 7.563190e-02
## 1266        20    26         26 3.772080e-02 0.8152006 0.4466781 8.444739e-02
## 1267        24    28         22 8.701053e-03 0.7260774 0.7367174 1.181057e-02
## 1268        26    28         22 7.143366e-02 0.8009003 0.4881444 1.463372e-01
## 1269        24    28         20 1.254321e-01 0.7982253 0.4864186 2.578687e-01
## 1270        22    26         22 2.639130e-02 0.8273469 0.4135292 6.381967e-02
## 1271        20    30         26 4.212067e-02 0.8189058 0.4252724 9.904398e-02
## 1272        28    24         20 3.280517e-02 0.8005401 0.4746850 6.910935e-02
## 1273        22    26         22 2.018436e-02 0.7906122 0.5326021 3.789763e-02
## 1274        26    30         26 1.296296e-02 0.8143962 0.4549306 2.849437e-02
## 1275        24    28         20 1.110491e-02 0.7245370 0.7303971 1.520394e-02
## 1276        24    28         24 1.327731e-02 0.8112881 0.4630510 2.867354e-02
## 1277        20    26         26 1.164835e-02 0.8240741 0.4169836 2.793480e-02
## 1278        20    28         22 3.439703e-02 0.8240816 0.4141339 8.305775e-02
## 1279        28    22         20 7.708201e-02 0.8081633 0.4667585 1.651432e-01
## 1280        24    24         22 4.898990e-02 0.7444898 0.6871677 7.129249e-02
## 1281        22    30         20 8.977273e-02 0.8001543 0.4944157 1.815734e-01
## 1282        26    26         20 1.672078e-01 0.7962963 0.5029070 3.324825e-01
## 1283        22    28         20 4.557200e-02 0.8126531 0.4434501 1.027669e-01
## 1284        22    30         18 1.759087e-02 0.7987755 0.4834446 3.638654e-02
## 1285        24    30         22 2.061237e-02 0.7458449 0.6508033 3.167220e-02
## 1286        24    24         22 1.710774e-01 0.7930612 0.5200526 3.289618e-01
## 1287        22    28         22 3.100428e-02 0.8206019 0.4319052 7.178492e-02
## 1288        22    28         20 2.965035e-02 0.7016327 0.8165424 3.631208e-02
## 1289        22    28         22 2.319109e-04 0.7785494 0.5560990 4.170318e-04
## 1290        26    22         22 3.276723e-02 0.8265306 0.4148839 7.897929e-02
## 1291        26    22         22 1.917493e-02 0.8281633 0.4097647 4.679497e-02
## 1292        24    24         22 6.548326e-03 0.8318367 0.4033440 1.623509e-02
## 1293        26    28         26 9.926244e-03 0.8265625 0.4194312 2.366596e-02
## 1294        22    26         22 2.725480e-02 0.7644898 0.6151606 4.430517e-02
## 1295        24    26         26 9.435471e-03 0.8313712 0.4046711 2.331639e-02
## 1296        20    30         22 1.008658e-01 0.8040123 0.4563776 2.210139e-01
## 1297        28    24         22 2.552631e-03 0.8283419 0.4089201 6.242371e-03
## 1298        22    22         26 4.295395e-02 0.7930612 0.5227084 8.217574e-02
## 1299        24    24         22 2.359963e-02 0.7767347 0.5767050 4.092150e-02
## 1300        28    24         24 2.772894e-02 0.8109418 0.4603107 6.023961e-02
## 1301        26    26         20 3.444056e-02 0.7287809 0.7301136 4.717151e-02
## 1302        28    26         22 8.627025e-02 0.8130194 0.4629697 1.863410e-01
## 1303        28    22         20 1.498592e-02 0.7375510 0.7007345 2.138602e-02
## 1304        26    28         22 9.679000e-02 0.7925900 0.5189983 1.864939e-01
## 1305        20    28         24 7.384045e-02 0.8086420 0.4556161 1.620672e-01
## 1306        24    28         24 3.188776e-04 0.8206371 0.4330922 7.362809e-04
## 1307        24    26         22 1.976577e-01 0.7916667 0.5323580 3.712872e-01
## 1308        24    28         18 2.879902e-02 0.8228571 0.4103423 7.018292e-02
## 1309        22    28         22 4.870130e-02 0.8070988 0.4761491 1.022816e-01
## 1310        22    22         26 4.071586e-03 0.8302041 0.4045974 1.006330e-02
## 1311        20    26         26 6.730769e-03 0.8117284 0.4561568 1.475539e-02
## 1312        24    26         20 3.575499e-02 0.8110204 0.4540636 7.874445e-02
## 1313        28    22         22 8.935840e-02 0.7002315 0.8319201 1.074122e-01
## 1314        26    28         20 6.672923e-02 0.8086194 0.4570674 1.459943e-01
## 1315        26    24         22 4.548247e-03 0.8105710 0.4660285 9.759589e-03
## 1316        24    24         22 3.906593e-02 0.8114286 0.4663626 8.376730e-02
## 1317        18    28         24 9.684274e-02 0.7342857 0.7243839 1.336898e-01
## 1318        22    28         20 1.082788e-01 0.8102041 0.4568812 2.369956e-01
## 1319        20    28         22 2.691111e-03 0.8102041 0.4568812 5.890177e-03
## 1320        22    28         20 4.929764e-02 0.7979592 0.4996047 9.867328e-02
## 1321        28    24         22 6.843858e-02 0.8170197 0.4365657 1.567658e-01
## 1322        28    24         20 7.870748e-02 0.8155864 0.4508853 1.745621e-01
## 1323        22    24         24 1.565904e-03 0.8326531 0.4009395 3.905587e-03
## 1324        26    24         22 2.969796e-02 0.8136574 0.4594097 6.464374e-02
## 1325        20    28         22 7.059566e-02 0.8179592 0.4323399 1.632874e-01
## 1326        24    24         22 4.164191e-02 0.8261224 0.4204396 9.904374e-02
## 1327        26    24         24 4.642750e-02 0.8254200 0.4227933 1.098113e-01
## 1328        20    26         24 2.587824e-02 0.8232653 0.4257656 6.078049e-02
## 1329        26    22         22 4.928405e-02 0.8179592 0.4420948 1.114785e-01
## 1330        26    22         24 9.149184e-02 0.7145062 0.8057402 1.135501e-01
## 1331        22    26         22 8.491508e-03 0.8236735 0.4221933 2.011285e-02
## 1332        20    24         26 1.219681e-01 0.8102041 0.4599109 2.651995e-01
## 1333        20    28         22 1.958794e-02 0.8240816 0.4129182 4.743782e-02
## 1334        24    26         20 1.759005e-02 0.8228571 0.4269275 4.120149e-02
## 1335        24    24         26 7.859237e-03 0.8491600 0.3543617 2.217857e-02
## 1336        26    26         26 5.675369e-02 0.7577252 0.6394794 8.874983e-02
## 1337        26    26         26 5.675369e-02 0.7577252 0.6394794 8.874983e-02
## 1338        22    26         22 2.740117e-02 0.8004082 0.4896460 5.596118e-02
## 1339        24    22         24 7.084235e-02 0.8146939 0.4525604 1.565368e-01
## 1340        24    22         24 7.961830e-02 0.7706122 0.5944081 1.339455e-01
## 1341        22    24         24 4.536768e-02 0.8248980 0.4232528 1.071881e-01
## 1342        20    30         20 2.172694e-02 0.8191837 0.4204451 5.167605e-02
## 1343        22    28         22 1.201437e-02 0.8121142 0.4485116 2.678720e-02
## 1344        22    28         22 1.201437e-02 0.8121142 0.4485116 2.678720e-02
## 1345        22    26         22 9.419640e-02 0.7787755 0.5556435 1.695267e-01
## 1346        26    26         18 9.464009e-03 0.8273469 0.4033328 2.346452e-02
## 1347        26    22         22 1.989122e-02 0.8142857 0.4473071 4.446882e-02
## 1348        20    28         26 2.739945e-02 0.8046019 0.4821333 5.682963e-02
## 1349        20    28         22 5.244755e-02 0.7412245 0.6744093 7.776813e-02
## 1350        24    30         24 2.809524e-02 0.7656147 0.6056462 4.638886e-02
## 1351        26    26         18 2.723585e-02 0.8106122 0.4592489 5.930520e-02
## 1352        24    30         16 4.280045e-02 0.7848980 0.4878012 8.774160e-02
## 1353        20    28         24 1.536535e-01 0.7866512 0.5122819 2.999393e-01
## 1354        22    26         22 1.678322e-01 0.8016327 0.4915471 3.414366e-01
## 1355        22    28         24 9.474033e-03 0.8151936 0.4461575 2.123473e-02
## 1356        24    24         24 0.000000e+00 0.8148148 0.4545455 0.000000e+00
## 1357        22    28         20 9.787800e-04 0.8208163 0.4232404 2.312587e-03
## 1358        22    26         22 8.482822e-02 0.8016327 0.4855654 1.746999e-01
## 1359        24    26         22 2.755629e-02 0.8059414 0.4753738 5.796763e-02
## 1360        20    26         24 3.406663e-02 0.8048980 0.4827456 7.056849e-02
## 1361        20    28         22 8.535079e-02 0.7951020 0.4816362 1.772101e-01
## 1362        24    26         22 1.237224e-02 0.8290895 0.4085263 3.028506e-02
## 1363        20    26         24 1.790598e-02 0.7428571 0.6762327 2.647902e-02
## 1364        26    28         22 5.368670e-02 0.8005540 0.4891873 1.097467e-01
## 1365        26    28         22 4.934125e-02 0.8036704 0.4777726 1.032735e-01
## 1366        24    24         24 1.140625e-01 0.8125000 0.4615385 2.471354e-01
## 1367        24    26         20 2.747253e-02 0.8195918 0.4304321 6.382546e-02
## 1368        18    30         22 2.246330e-02 0.8036735 0.4633229 4.848303e-02
## 1369        24    28         20 1.137280e-01 0.7912809 0.5130041 2.216902e-01
## 1370        28    30         24 5.169196e-02 0.8143962 0.4458390 1.159431e-01
## 1371        24    26         24 1.886059e-02 0.8298028 0.4092435 4.608646e-02
## 1372        24    26         22 1.088126e-02 0.8179012 0.4419877 2.461892e-02
## 1373        20    26         24 1.189532e-03 0.7563265 0.6340031 1.876225e-03
## 1374        24    28         22 1.652118e-02 0.8250548 0.4196648 3.936755e-02
## 1375        20    28         22 3.756957e-02 0.8146939 0.4329568 8.677441e-02
## 1376        22    24         24 2.141765e-02 0.8273469 0.4163266 5.144435e-02
## 1377        26    30         26 1.393432e-02 0.8045806 0.4805384 2.899731e-02
## 1378        24    24         24 3.456790e-02 0.8175154 0.4464370 7.743064e-02
## 1379        18    26         26 2.837607e-02 0.7951020 0.5012197 5.661403e-02
## 1380        22    28         22 1.850649e-02 0.7515432 0.6372303 2.904208e-02
## 1381        20    30         20 2.042484e-03 0.8261224 0.3964921 5.151386e-03
## 1382        22    24         24 1.718661e-03 0.8322449 0.4022062 4.273084e-03
## 1383        18    28         26 8.247274e-02 0.8144290 0.4371398 1.886644e-01
## 1384        22    28         26 4.947684e-02 0.8234072 0.4228110 1.170188e-01
## 1385        20    26         24 9.557158e-02 0.8146939 0.4562555 2.094695e-01
## 1386        26    28         20 4.792403e-02 0.8195763 0.4297727 1.115102e-01
## 1387        22    26         26 4.434966e-02 0.8133674 0.4554467 9.737619e-02
## 1388        22    26         22 1.253984e-01 0.7889796 0.5344206 2.346437e-01
## 1389        18    30         22 4.221680e-02 0.8036735 0.4741678 8.903347e-02
## 1390        26    28         20 4.814233e-03 0.8287071 0.4013096 1.199631e-02
## 1391        24    26         20 1.883013e-01 0.7942857 0.5094770 3.695972e-01
## 1392        24    24         26 4.473917e-02 0.8184806 0.4437236 1.008267e-01
## 1393        26    28         20 6.222880e-02 0.8064280 0.4699554 1.324143e-01
## 1394        28    26         18 1.045125e-01 0.7966821 0.4904611 2.130903e-01
## 1395        26    26         20 3.956917e-03 0.7920525 0.5114392 7.736828e-03
## 1396        26    24         20 4.953380e-02 0.8224490 0.4240599 1.168085e-01
## 1397        24    26         22 4.144946e-02 0.8001543 0.4916077 8.431409e-02
## 1398        26    22         24 5.512456e-02 0.8040123 0.4776888 1.153985e-01
## 1399        22    28         24 2.285167e-02 0.8192111 0.4314853 5.296049e-02
## 1400        26    26         24 1.608211e-03 0.8299861 0.4089621 3.932421e-03
## 1401        24    26         20 1.089744e-01 0.7542857 0.6219891 1.752030e-01
## 1402        24    24         22 2.853105e-02 0.8065306 0.4808344 5.933654e-02
## 1403        20    28         22 8.910124e-03 0.8065306 0.4703487 1.894365e-02
## 1404        20    28         24 7.078419e-02 0.8020833 0.4748299 1.490727e-01
## 1405        22    28         20 1.801802e-02 0.8257143 0.4073159 4.423598e-02
## 1406        22    28         20 1.377410e-02 0.8032653 0.4708056 2.925646e-02
## 1407        20    28         22 4.063361e-02 0.6906122 0.8503116 4.778673e-02
## 1408        26    22         22 7.402122e-02 0.7922449 0.5091024 1.453955e-01
## 1409        24    28         18 1.371605e-01 0.7930612 0.5004146 2.740937e-01
## 1410        26    22         24 1.103069e-01 0.8121142 0.4560404 2.418798e-01
## 1411        24    24         22 6.734007e-03 0.7253061 0.7535001 8.936968e-03
## 1412        24    24         22 6.734007e-03 0.7253061 0.7535001 8.936968e-03
## 1413        24    24         22 5.047745e-02 0.7359184 0.7108775 7.100724e-02
## 1414        20    28         24 5.952381e-04 0.8109568 0.4522767 1.316093e-03
## 1415        22    28         22 4.404532e-02 0.8105710 0.4653752 9.464475e-02
## 1416        20    28         22 5.871212e-02 0.8146939 0.4454136 1.318149e-01
## 1417        24    22         24 2.149559e-02 0.8293878 0.4105859 5.235346e-02
## 1418        20    28         22 2.102430e-02 0.8044898 0.4630783 4.540119e-02
## 1419        22    28         22 9.021513e-03 0.8665123 0.3064033 2.944326e-02
## 1420        22    28         20 9.263834e-03 0.8114286 0.4498125 2.059488e-02
## 1421        22    24         24 2.235135e-02 0.8248980 0.4248272 5.261281e-02
## 1422        24    30         18 2.553191e-03 0.8090278 0.4411063 5.788154e-03
## 1423        22    28         22 4.045910e-02 0.8043981 0.4813417 8.405484e-02
## 1424        26    28         22 7.398220e-02 0.7316482 0.7269716 1.017677e-01
## 1425        24    24         22 8.263953e-02 0.8004082 0.4943056 1.671831e-01
## 1426        22    30         20 5.893361e-02 0.7935957 0.4844036 1.216622e-01
## 1427        22    26         22 2.092523e-01 0.7624490 0.6037795 3.465707e-01
## 1428        18    28         26 1.590335e-02 0.8020833 0.4665335 3.408834e-02
## 1429        26    26         22 2.730828e-02 0.7688093 0.5910536 4.620272e-02
##         start      end
## 1     2523393  2523395
## 2     2542156  2542158
## 3     2647805  2647807
## 4     2970225  2970227
## 5     3329446  3329448
## 6     3795099  3795101
## 7     2221344  2221346
## 8     2299489  2299491
## 9     2565300  2565302
## 10    3864354  3864356
## 11    4319899  4319901
## 12    4319906  4319908
## 13    5404578  5404580
## 14    5843372  5843374
## 15     854946   854948
## 16    1070816  1070818
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## 1363 22619277 22619279
## 1364 22631257 22631259
## 1365 22631265 22631267
## 1366  3110101  3110103
## 1367  3205918  3205920
## 1368  9023845  9023847
## 1369 11572819 11572821
## 1370 12368531 12368533
## 1371 42179417 42179419
## 1372 42179518 42179520
## 1373 51646205 51646207
## 1374 52781288 52781290
## 1375 53790034 53790036
## 1376 53792737 53792739
## 1377 56768904 56768906
## 1378    81275    81277
## 1379  3189689  3189691
## 1380  4397297  4397299
## 1381  9469156  9469158
## 1382 10641410 10641412
## 1383 10949820 10949822
## 1384 12993393 12993395
## 1385 15515792 15515794
## 1386 15608784 15608786
## 1387 15609136 15609138
## 1388 16295315 16295317
## 1389 22656164 22656166
## 1390 25885726 25885728
## 1391 10460018 10460020
## 1392 27155784 27155786
## 1393 37939433 37939435
## 1394 51115047 51115049
## 1395 51116510 51116512
## 1396 51915039 51915041
## 1397 52681286 52681288
## 1398 53276518 53276520
## 1399  1736925  1736927
## 1400  1736993  1736995
## 1401  3863542  3863544
## 1402  4200444  4200446
## 1403  4799161  4799163
## 1404  5027891  5027893
## 1405  8007932  8007934
## 1406 17997209 17997211
## 1407 18604646 18604648
## 1408 20239635 20239637
## 1409 15154095 15154097
## 1410 22342666 22342668
## 1411 22634292 22634294
## 1412 22634293 22634295
## 1413 22721137 22721139
## 1414 22869377 22869379
## 1415 24108404 24108406
## 1416 27359591 27359593
## 1417 28549833 28549835
## 1418 28867519 28867521
## 1419 28867523 28867525
## 1420 29431716 29431718
## 1421 29675108 29675110
## 1422  1163243  1163245
## 1423  1451610  1451612
## 1424  2021960  2021962
## 1425  5134391  5134393
## 1426  5239108  5239110
## 1427  6917737  6917739
## 1428 11221969 11221971
## 1429 25982502 25982504

Annotate SNPs by looking for intersection among SNPs and genes - there are 286 (20% miss) 736 (25% miss) SNPSs located within gene coding regions

(snps.annot <- bed_intersect(x=genes, y=snps.map %>% select(chrom, start, end), suffix = c(".gene", ".snp")) %>% 
  left_join(P.plat.bestblast, by = c("geneID.gene"="id_gtf"))) #annotate genes containing SNPs 

## # A tibble: 286 x 21
##    chrom      start.gene end.gene geneID.gene start.snp end.snp .source .overlap
##    <chr>           <dbl>    <dbl> <chr>           <dbl>   <dbl> <chr>      <int>
##  1 HiC_scaff~    2910342  2972113 evm.TU.HiC~   2970225  2.97e6 1              2
##  2 HiC_scaff~    3781588  3889899 evm.TU.HiC~   3795099  3.80e6 1              2
##  3 HiC_scaff~    3842675  3867362 evm.TU.HiC~   3864354  3.86e6 1              2
##  4 HiC_scaff~    5812471  5861708 evm.TU.HiC~   5843372  5.84e6 1              2
##  5 HiC_scaff~     841688   869093 evm.TU.HiC~    854946  8.55e5 1              2
##  6 HiC_scaff~   13897140 13930596 evm.TU.HiC~  13897148  1.39e7 1              2
##  7 HiC_scaff~   17412158 17447290 evm.TU.HiC~  17442642  1.74e7 1              2
##  8 HiC_scaff~   11410480 11536332 evm.TU.HiC~  11446041  1.14e7 1              2
##  9 HiC_scaff~   15897444 15934626 evm.TU.HiC~  15918693  1.59e7 1              2
## 10 HiC_scaff~     596621   661895 evm.TU.HiC~    601714  6.02e5 1              2
## # ... with 276 more rows, and 13 more variables: id <chr>, blast_type <fct>,
## #   seq_length <dbl>, hit_acc <chr>, hit_desc <chr>, score <dbl>,
## #   e_value <dbl>, percent_ident <chr>, percent_ident.num <dbl>,
## #   query_start <dbl>, query_end <dbl>, hit_start <dbl>, hit_end <dbl>

35 SNPs are located within genes that are differentially expressed among pH treatments

snps.annot %>% 
  filter(geneID.gene %in% 
           unique(c(rownames(diffex.AM), rownames(diffex.AL), rownames(diffex.ML)))) # 94 SNPs located in DEGs

## # A tibble: 35 x 21
##    chrom      start.gene end.gene geneID.gene start.snp end.snp .source .overlap
##    <chr>           <dbl>    <dbl> <chr>           <dbl>   <dbl> <chr>      <int>
##  1 HiC_scaff~   11410480 11536332 evm.TU.HiC~  11446041  1.14e7 1              2
##  2 HiC_scaff~    7490954  7549189 evm.TU.HiC~   7515163  7.52e6 1              2
##  3 HiC_scaff~   34790135 34840089 evm.TU.HiC~  34827831  3.48e7 1              2
##  4 HiC_scaff~   22642452 22668074 evm.TU.HiC~  22644666  2.26e7 1              2
##  5 HiC_scaff~   22642452 22668074 evm.TU.HiC~  22644672  2.26e7 1              2
##  6 HiC_scaff~   22642452 22668074 evm.TU.HiC~  22666887  2.27e7 1              2
##  7 HiC_scaff~   31986222 32044200 evm.TU.HiC~  32042609  3.20e7 1              2
##  8 HiC_scaff~   32525044 32530652 evm.TU.HiC~  32528767  3.25e7 1              2
##  9 HiC_scaff~    7517435  7563575 evm.TU.HiC~   7539468  7.54e6 1              2
## 10 HiC_scaff~   24982613 25000151 evm.TU.HiC~  24993985  2.50e7 1              2
## # ... with 25 more rows, and 13 more variables: id <chr>, blast_type <fct>,
## #   seq_length <dbl>, hit_acc <chr>, hit_desc <chr>, score <dbl>,
## #   e_value <dbl>, percent_ident <chr>, percent_ident.num <dbl>,
## #   query_start <dbl>, query_end <dbl>, hit_start <dbl>, hit_end <dbl>

66 SNPs are located within genes associated with pH according to WGCNA

load("../results/wgcna/geneInfo")
load(file="../results/wgcna/modules")
load(file="../results/wgcna/modules.p")
load(file="../results/wgcna/modules.cor")

snps.annot %>% 
  left_join(geneInfo %>% select(id, moduleColor, GS.pH, p.GS.pH, match(modules.cor,names(geneInfo)), match(modules.p,names(geneInfo))), by=c("geneID.gene"="id")) %>%
  filter(p.GS.pH < 0.05) 

## # A tibble: 66 x 38
##    chrom      start.gene end.gene geneID.gene start.snp end.snp .source .overlap
##    <chr>           <dbl>    <dbl> <chr>           <dbl>   <dbl> <chr>      <int>
##  1 HiC_scaff~   11410480 11536332 evm.TU.HiC~  11446041  1.14e7 1              2
##  2 HiC_scaff~   15897444 15934626 evm.TU.HiC~  15918693  1.59e7 1              2
##  3 HiC_scaff~   27118276 27144079 evm.TU.HiC~  27118494  2.71e7 1              2
##  4 HiC_scaff~   42153803 42166880 evm.TU.HiC~  42161111  4.22e7 1              2
##  5 HiC_scaff~   42153803 42166880 evm.TU.HiC~  42164925  4.22e7 1              2
##  6 HiC_scaff~   42153803 42166880 evm.TU.HiC~  42164945  4.22e7 1              2
##  7 HiC_scaff~   34790135 34840089 evm.TU.HiC~  34827831  3.48e7 1              2
##  8 HiC_scaff~   22787616 22804029 evm.TU.HiC~  22801071  2.28e7 1              2
##  9 HiC_scaff~    9711014  9802119 evm.TU.HiC~   9778840  9.78e6 1              2
## 10 HiC_scaff~   20646873 20662570 evm.TU.HiC~  20651021  2.07e7 1              2
## # ... with 56 more rows, and 30 more variables: id <chr>, blast_type <fct>,
## #   seq_length <dbl>, hit_acc <chr>, hit_desc <chr>, score <dbl>,
## #   e_value <dbl>, percent_ident <chr>, percent_ident.num <dbl>,
## #   query_start <dbl>, query_end <dbl>, hit_start <dbl>, hit_end <dbl>,
## #   moduleColor <chr>, GS.pH <dbl>, p.GS.pH <dbl>, MM.brown <dbl>,
## #   MM.pink <dbl>, MM.lightcyan1 <dbl>, MM.red <dbl>, MM.cyan <dbl>,
## #   MM.green <dbl>, MM.darkgreen <dbl>, p.MM.brown <dbl>, p.MM.pink <dbl>, ...

133 SNPS are located within genes assigned to pH-associated modules from WGCNA

snps.annot %>% 
  left_join(geneInfo %>% select(id, moduleColor, GS.pH, p.GS.pH, match(modules.cor,names(geneInfo)), match(modules.p,names(geneInfo))), by=c("geneID.gene"="id")) %>%
  filter(moduleColor %in% modules)

## # A tibble: 133 x 38
##    chrom      start.gene end.gene geneID.gene start.snp end.snp .source .overlap
##    <chr>           <dbl>    <dbl> <chr>           <dbl>   <dbl> <chr>      <int>
##  1 HiC_scaff~     841688   869093 evm.TU.HiC~    854946  8.55e5 1              2
##  2 HiC_scaff~   13897140 13930596 evm.TU.HiC~  13897148  1.39e7 1              2
##  3 HiC_scaff~   17412158 17447290 evm.TU.HiC~  17442642  1.74e7 1              2
##  4 HiC_scaff~   11410480 11536332 evm.TU.HiC~  11446041  1.14e7 1              2
##  5 HiC_scaff~   15897444 15934626 evm.TU.HiC~  15918693  1.59e7 1              2
##  6 HiC_scaff~   35904000 35907532 evm.TU.HiC~  35904026  3.59e7 1              2
##  7 HiC_scaff~   40683473 40703711 evm.TU.HiC~  40687859  4.07e7 1              2
##  8 HiC_scaff~   27042480 27052463 evm.TU.HiC~  27050414  2.71e7 1              2
##  9 HiC_scaff~   42153803 42166880 evm.TU.HiC~  42161111  4.22e7 1              2
## 10 HiC_scaff~   42153803 42166880 evm.TU.HiC~  42164925  4.22e7 1              2
## # ... with 123 more rows, and 30 more variables: id <chr>, blast_type <fct>,
## #   seq_length <dbl>, hit_acc <chr>, hit_desc <chr>, score <dbl>,
## #   e_value <dbl>, percent_ident <chr>, percent_ident.num <dbl>,
## #   query_start <dbl>, query_end <dbl>, hit_start <dbl>, hit_end <dbl>,
## #   moduleColor <chr>, GS.pH <dbl>, p.GS.pH <dbl>, MM.brown <dbl>,
## #   MM.pink <dbl>, MM.lightcyan1 <dbl>, MM.red <dbl>, MM.cyan <dbl>,
## #   MM.green <dbl>, MM.darkgreen <dbl>, p.MM.brown <dbl>, p.MM.pink <dbl>, ...

50 SNPS are located within genes assigned to pH-associated modules from WGCNA and are correlated with pH

snps.annot %>% 
  left_join(geneInfo %>% select(id, moduleColor, GS.pH, p.GS.pH, match(modules.cor,names(geneInfo)), match(modules.p,names(geneInfo))), by=c("geneID.gene"="id")) %>%
  filter(moduleColor %in% modules) %>% filter(p.GS.pH < 0.05)

## # A tibble: 50 x 38
##    chrom      start.gene end.gene geneID.gene start.snp end.snp .source .overlap
##    <chr>           <dbl>    <dbl> <chr>           <dbl>   <dbl> <chr>      <int>
##  1 HiC_scaff~   11410480 11536332 evm.TU.HiC~  11446041  1.14e7 1              2
##  2 HiC_scaff~   15897444 15934626 evm.TU.HiC~  15918693  1.59e7 1              2
##  3 HiC_scaff~   42153803 42166880 evm.TU.HiC~  42161111  4.22e7 1              2
##  4 HiC_scaff~   42153803 42166880 evm.TU.HiC~  42164925  4.22e7 1              2
##  5 HiC_scaff~   42153803 42166880 evm.TU.HiC~  42164945  4.22e7 1              2
##  6 HiC_scaff~   34790135 34840089 evm.TU.HiC~  34827831  3.48e7 1              2
##  7 HiC_scaff~   22787616 22804029 evm.TU.HiC~  22801071  2.28e7 1              2
##  8 HiC_scaff~   31986222 32044200 evm.TU.HiC~  32042609  3.20e7 1              2
##  9 HiC_scaff~   27055706 27096699 evm.TU.HiC~  27081332  2.71e7 1              2
## 10 HiC_scaff~   32525044 32530652 evm.TU.HiC~  32528767  3.25e7 1              2
## # ... with 40 more rows, and 30 more variables: id <chr>, blast_type <fct>,
## #   seq_length <dbl>, hit_acc <chr>, hit_desc <chr>, score <dbl>,
## #   e_value <dbl>, percent_ident <chr>, percent_ident.num <dbl>,
## #   query_start <dbl>, query_end <dbl>, hit_start <dbl>, hit_end <dbl>,
## #   moduleColor <chr>, GS.pH <dbl>, p.GS.pH <dbl>, MM.brown <dbl>,
## #   MM.pink <dbl>, MM.lightcyan1 <dbl>, MM.red <dbl>, MM.cyan <dbl>,
## #   MM.green <dbl>, MM.darkgreen <dbl>, p.MM.brown <dbl>, p.MM.pink <dbl>, ...

Identify siblings using Colony

I will use Colony to identify siblings in my samples. The Colony software is only available via the command line for Mac users (it’s typically used via GUI on Windows). To get the most current version of the program I actually had to email the developer. He send me a link to download it. I’m running Colony Version 2.0.6.6 (June 30, 2020), which is saved on my computer and in this project’s repo (references/colony2.mac.20200904).

Prepare files for Colony sibship analysis Colony identifies siblings, which I would like to do with my juveniles. Here I prepare files for Colony.

Mac suggested that I only keep SNPs with very high minor allele frequencies. Here I use SNPRelate to export SNPs with MAF >=20%, and keeping the missing rate <= 20%.

Sibship analysis via Colony

snpset.4Colony <- snpgdsLDpruning(genofile, maf=.20, missing.rate=.20, autosome.only=FALSE)

## SNP pruning based on LD:
## Excluding 918,315 SNPs (monomorphic: TRUE, MAF: 0.2, missing rate: 0.2)
##     # of samples: 43
##     # of SNPs: 1,190
##     using 1 thread
##     sliding window: 500,000 basepairs, Inf SNPs
##     |LD| threshold: 0.2
##     method: composite
## Chromosome HiC_scaffold_1: 0.09%, 3/3,379
## Chromosome HiC_scaffold_10: 0.11%, 6/5,432
## Chromosome HiC_scaffold_100: 0.11%, 11/9,741
## Chromosome HiC_scaffold_101: 0.05%, 3/6,016
## Chromosome HiC_scaffold_102: 0.12%, 12/10,263
## Chromosome HiC_scaffold_1027: 2.63%, 1/38
## Chromosome HiC_scaffold_103: 0.09%, 13/14,948
## Chromosome HiC_scaffold_104: 0.10%, 11/11,362
## Chromosome HiC_scaffold_11: 0.10%, 7/7,301
## Chromosome HiC_scaffold_12: 0.10%, 9/9,355
## Chromosome HiC_scaffold_13: 0.07%, 6/8,325
## Chromosome HiC_scaffold_14: 0.04%, 2/4,824
## Chromosome HiC_scaffold_15: 0.14%, 23/16,693
## Chromosome HiC_scaffold_16: 0.05%, 6/11,696
## Chromosome HiC_scaffold_17: 0.09%, 9/10,389
## Chromosome HiC_scaffold_18: 0.13%, 13/9,821
## Chromosome HiC_scaffold_19: 0.11%, 17/16,126
## Chromosome HiC_scaffold_2: 0.12%, 11/9,174
## Chromosome HiC_scaffold_20: 0.11%, 7/6,534
## Chromosome HiC_scaffold_21: 0.10%, 16/15,780
## Chromosome HiC_scaffold_22: 0.22%, 14/6,506
## Chromosome HiC_scaffold_23: 0.12%, 9/7,757
## Chromosome HiC_scaffold_24: 0.04%, 4/9,753
## Chromosome HiC_scaffold_25: 0.14%, 7/4,934
## Chromosome HiC_scaffold_26: 0.10%, 16/15,336
## Chromosome HiC_scaffold_27: 0.11%, 10/9,390
## Chromosome HiC_scaffold_28: 0.11%, 12/11,269
## Chromosome HiC_scaffold_29: 0.15%, 14/9,528
## Chromosome HiC_scaffold_3: 0.16%, 11/6,962
## Chromosome HiC_scaffold_30: 0.07%, 5/6,965
## Chromosome HiC_scaffold_31: 0.13%, 6/4,514
## Chromosome HiC_scaffold_32: 0.11%, 5/4,498
## Chromosome HiC_scaffold_33: 0.16%, 6/3,838
## Chromosome HiC_scaffold_34: 0.07%, 3/4,031
## Chromosome HiC_scaffold_35: 0.20%, 11/5,561
## Chromosome HiC_scaffold_36: 0.26%, 8/3,023
## Chromosome HiC_scaffold_37: 0.16%, 8/4,853
## Chromosome HiC_scaffold_38: 0.25%, 13/5,302
## Chromosome HiC_scaffold_39: 0.20%, 7/3,450
## Chromosome HiC_scaffold_4: 0.07%, 5/7,531
## Chromosome HiC_scaffold_40: 0.35%, 10/2,850
## Chromosome HiC_scaffold_41: 0.14%, 8/5,877
## Chromosome HiC_scaffold_42: 0.17%, 10/6,018
## Chromosome HiC_scaffold_43: 0.12%, 13/10,950
## Chromosome HiC_scaffold_44: 0.06%, 2/3,310
## Chromosome HiC_scaffold_45: 0.08%, 8/9,509
## Chromosome HiC_scaffold_46: 0.04%, 7/18,080
## Chromosome HiC_scaffold_47: 0.07%, 3/4,165
## Chromosome HiC_scaffold_48: 0.10%, 10/9,596
## Chromosome HiC_scaffold_49: 0.13%, 11/8,545
## Chromosome HiC_scaffold_5: 0.14%, 8/5,859
## Chromosome HiC_scaffold_50: 0.07%, 10/13,554
## Chromosome HiC_scaffold_51: 0.13%, 13/10,072
## Chromosome HiC_scaffold_52: 0.29%, 27/9,298
## Chromosome HiC_scaffold_53: 0.07%, 5/6,831
## Chromosome HiC_scaffold_54: 0.15%, 12/7,956
## Chromosome HiC_scaffold_55: 0.22%, 10/4,530
## Chromosome HiC_scaffold_56: 0.04%, 9/20,020
## Chromosome HiC_scaffold_57: 0.08%, 11/14,193
## Chromosome HiC_scaffold_58: 0.13%, 11/8,410
## Chromosome HiC_scaffold_59: 0.15%, 8/5,467
## Chromosome HiC_scaffold_6: 0.18%, 9/5,074
## Chromosome HiC_scaffold_60: 0.08%, 13/16,819
## Chromosome HiC_scaffold_61: 0.06%, 3/4,820
## Chromosome HiC_scaffold_62: 0.07%, 6/8,053
## Chromosome HiC_scaffold_63: 0.09%, 3/3,179
## Chromosome HiC_scaffold_64: 0.15%, 7/4,621
## Chromosome HiC_scaffold_65: 0.08%, 8/10,152
## Chromosome HiC_scaffold_66: 0.11%, 12/11,257
## Chromosome HiC_scaffold_67: 0.08%, 8/9,945
## Chromosome HiC_scaffold_68: 0.05%, 5/10,100
## Chromosome HiC_scaffold_69: 0.06%, 11/17,745
## Chromosome HiC_scaffold_6951: 0.23%, 6/2,622
## Chromosome HiC_scaffold_6958: 0.27%, 1/373
## Chromosome HiC_scaffold_7: 0.13%, 6/4,741
## Chromosome HiC_scaffold_70: 0.04%, 2/4,661
## Chromosome HiC_scaffold_71: 0.17%, 7/4,081
## Chromosome HiC_scaffold_72: 0.12%, 11/9,556
## Chromosome HiC_scaffold_73: 0.15%, 5/3,441
## Chromosome HiC_scaffold_74: 0.12%, 14/11,377
## Chromosome HiC_scaffold_75: 0.15%, 2/1,367
## Chromosome HiC_scaffold_76: 0.08%, 10/11,983
## Chromosome HiC_scaffold_77: 0.11%, 8/7,438
## Chromosome HiC_scaffold_78: 0.08%, 11/14,230
## Chromosome HiC_scaffold_79: 0.12%, 28/23,329
## Chromosome HiC_scaffold_8: 0.17%, 11/6,507
## Chromosome HiC_scaffold_80: 0.11%, 13/11,310
## Chromosome HiC_scaffold_81: 0.09%, 17/19,617
## Chromosome HiC_scaffold_82: 0.08%, 9/11,275
## Chromosome HiC_scaffold_83: 0.09%, 4/4,480
## Chromosome HiC_scaffold_84: 0.08%, 14/17,064
## Chromosome HiC_scaffold_85: 0.09%, 10/10,944
## Chromosome HiC_scaffold_86: 0.14%, 12/8,564
## Chromosome HiC_scaffold_87: 0.14%, 6/4,283
## Chromosome HiC_scaffold_88: 0.12%, 8/6,616
## Chromosome HiC_scaffold_89: 0.09%, 9/10,388
## Chromosome HiC_scaffold_9: 0.13%, 10/7,962
## Chromosome HiC_scaffold_90: 0.12%, 14/11,817
## Chromosome HiC_scaffold_91: 0.11%, 5/4,639
## Chromosome HiC_scaffold_92: 0.05%, 9/17,016
## Chromosome HiC_scaffold_93: 0.22%, 9/4,019
## Chromosome HiC_scaffold_94: 0.06%, 9/14,019
## Chromosome HiC_scaffold_946: 0.27%, 1/372
## Chromosome HiC_scaffold_95: 0.10%, 8/8,341
## Chromosome HiC_scaffold_96: 0.10%, 7/6,741
## Chromosome HiC_scaffold_97: 0.11%, 8/7,479
## Chromosome HiC_scaffold_98: 0.18%, 8/4,454
## Chromosome HiC_scaffold_99: 0.09%, 6/6,788
## 969 markers are selected in total.

snpset.id.4Colony <- unlist(unname(snpset.4Colony))
snpgdsCreateGenoSet(src.fn="../results/genotype/genotypes.gds",
                    dest.fn="../results/genotype/colony/genotypes-4Colony.gds",
                    snp.id=snpset.id.4Colony)

## Create a GDS genotype file:
## The new dataset consists of 43 samples and 969 SNPs
##     write sample.id
##     write snp.id
##     write snp.rs.id
##     write snp.position
##     write snp.chromosome
##     write snp.allele
## SNP genotypes are stored in SNP-major mode (Sample X SNP).

Recode genotypes for Colony

• SNPRelate codes alleles this way: “There are four possible values stored in the variable genotype: 0, 1, 2 and 3. For bi-allelic SNP sites, “0” indicates two B alleles, “1” indicates one A allele and one B allele, “2” indicates two A alleles, and “3” is a missing genotype. (When you) take out genotype data with sample and SNP IDs, and four possible values are returned 0, 1, 2 and NA (3 is replaced by NA).

• Colony codes alleles this way: “The first column gives the individual ID (a string containing a maximum of 20 letters and/or numbers, no other characters are allowed), the 2nd and 3rd columns give the alleles observed for the individual at the first locus, the 4th and 5th give the alleles observed for the individual at the 2nd locus … An allele is identified by an integer, in the range of 1~999999999. If the locus is a dominant marker, then only one (instead of 2) column is required for the marker, and the value for the genotype should be either 1 (dominant phenotype, presence of a band) or 2 (recessive phenotype, absence of a band). Missing genotypes are indicated by 0 0 for a codominant marker and 0 for a dominant marker.” Also, there cannot be any NA values in the Colony genotype data.

I wanted to use the R program radiator to create a Colony formatted genotype file. But after a TON of attempts I wasn’t able to get my SNPRelate .gds data into radiator directly nor could I successfully import a .vcf file.

So, here I manually re-code the genotype matrix.

# Extract genotype matrix 
geno.matrix4Colony <- snpgdsGetGeno(gdsobj="../results/genotype/colony/genotypes-4Colony.gds", with.id=TRUE)

## Genotype matrix: 43 samples X 969 SNPs

paste("No. of SNPs for Colony sibship analysis: ", ncol(geno.matrix4Colony$genotype), sep="") 

## [1] "No. of SNPs for Colony sibship analysis: 969"

paste("No. of samples for Colony sibship analysis: ", nrow(geno.matrix4Colony$genotype), sep="") 

## [1] "No. of samples for Colony sibship analysis: 43"

# Replace SNPRelate numeric allele coding with character allele coding 
a <- geno.matrix4Colony$genotype %>% as_data_frame() %>% 
  mutate_all(funs(str_replace(., "0", "BB"))) %>%
  mutate_all(funs(str_replace(., "1", "AB"))) %>%
  mutate_all(funs(str_replace(., "2", "AA")))

## Warning: `as_data_frame()` was deprecated in tibble 2.0.0.
## Please use `as_tibble()` instead.
## The signature and semantics have changed, see `?as_tibble`.
## This warning is displayed once every 8 hours.
## Call `lifecycle::last_lifecycle_warnings()` to see where this warning was generated.

## Warning: The `x` argument of `as_tibble.matrix()` must have unique column names if `.name_repair` is omitted as of tibble 2.0.0.
## Using compatibility `.name_repair`.
## This warning is displayed once every 8 hours.
## Call `lifecycle::last_lifecycle_warnings()` to see where this warning was generated.

## Warning: `funs()` was deprecated in dplyr 0.8.0.
## Please use a list of either functions or lambdas: 
## 
##   # Simple named list: 
##   list(mean = mean, median = median)
## 
##   # Auto named with `tibble::lst()`: 
##   tibble::lst(mean, median)
## 
##   # Using lambdas
##   list(~ mean(., trim = .2), ~ median(., na.rm = TRUE))
## This warning is displayed once every 8 hours.
## Call `lifecycle::last_lifecycle_warnings()` to see where this warning was generated.

# Duplicate each column. Now there's 2 columns per locus, both containing the same bi-allelic genotype info. 
b <- a[rep(names(a), rep(2, times=ncol(a)))] %>% clean_names()
ncol(b) == ncol(a)*2 #should be TRUE 

## [1] TRUE

# For each locus, extract the first allele in column 1, and the second allele in column 2. 
c <- b  #duplicate dataframe 
odds <- seq(from = 1, to = ncol(c), by = 2)
evens <- seq(from = 2, to = ncol(c), by = 2)
odds.names <- colnames(b[odds])
evens.names <- colnames(b[evens])

for (i in 1:length(odds)) {
c[[odds.names[i]]] <- substring(b[[odds.names[i]]], first = 1, last = 1)  
}
for (i in 1:length(evens)) {
c[[evens.names[i]]] <- substring(b[[evens.names[i]]], first = 2, last = 2)  
}

# Now replace the character allele information with Colony's way of numeric coding. 
# There are 2 columns for each locus (e.g. v1 and v1_2), and only 3 options for each allele:
# 1= B allele 
# 2= A allele 
# 0= missing allele 
(geno.matrix4Colony.recode <- c %>% 
  mutate_all(funs(str_replace(., "B", "1"))) %>%
  mutate_all(funs(str_replace(., "A", "2"))) %>%
  mutate(., across(everything(), ~replace_na(.x, 0))))

## # A tibble: 43 x 1,938
##    v1    v1_2  v2    v2_2  v3    v3_2  v4    v4_2  v5    v5_2  v6    v6_2  v7   
##    <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr>
##  1 1     1     2     1     2     2     1     1     2     2     2     1     1    
##  2 0     0     2     2     0     0     2     2     0     0     2     2     2    
##  3 0     0     2     2     1     1     2     2     1     1     2     2     2    
##  4 0     0     2     2     1     1     2     2     0     0     1     1     2    
##  5 0     0     2     2     2     1     1     1     1     1     2     1     1    
##  6 0     0     2     2     1     1     2     1     2     2     2     2     1    
##  7 2     2     0     0     1     1     0     0     1     1     1     1     2    
##  8 1     1     1     1     1     1     0     0     1     1     1     1     2    
##  9 1     1     2     2     1     1     2     2     1     1     1     1     2    
## 10 1     1     2     2     2     1     1     1     2     2     2     1     1    
## # ... with 33 more rows, and 1,925 more variables: v7_2 <chr>, v8 <chr>,
## #   v8_2 <chr>, v9 <chr>, v9_2 <chr>, v10 <chr>, v10_2 <chr>, v11 <chr>,
## #   v11_2 <chr>, v12 <chr>, v12_2 <chr>, v13 <chr>, v13_2 <chr>, v14 <chr>,
## #   v14_2 <chr>, v15 <chr>, v15_2 <chr>, v16 <chr>, v16_2 <chr>, v17 <chr>,
## #   v17_2 <chr>, v18 <chr>, v18_2 <chr>, v19 <chr>, v19_2 <chr>, v20 <chr>,
## #   v20_2 <chr>, v21 <chr>, v21_2 <chr>, v22 <chr>, v22_2 <chr>, v23 <chr>,
## #   v23_2 <chr>, v24 <chr>, v24_2 <chr>, v25 <chr>, v25_2 <chr>, v26 <chr>, ...

# Save genotype matrix to file, while also adding a column with sample number 
write_delim(cbind(sampleID=paste("O", geno.matrix4Colony$sample.id, sep=""),
                  geno.matrix4Colony.recode),
            file="../results/genotype/colony/geno.matrix.tab", delim="   ", col_names=FALSE)

Create Colony input file

I created a text file that will be the input for Colony. I used Colony’s example input file to do so.

Here’s a snapshot of the input file, truncating the genotype info (there are 53 samples, but here I only show 2)

'rkc_snps'  !Dataset name
'rkc_colony'  !Output file name
43         ! Number of offspring in the sample
263        ! Number of loci
100        ! Seed for random number generator
0          ! 0/1=Not updating/updating allele frequency
2          ! 2/1=Dioecious/Monoecious species
0          ! 0/1=No inbreeding/inbreeding
0          ! 0/1=Diploid species/HaploDiploid species
0  0       ! 0/1=Polygamy/Monogamy for males & females
0          ! 0/1=Clone inference =No/Yes
0          ! 0/1=Full sibship size scaling =No/Yes
0          ! 0,1,2,3=No,weak,medium,strong sibship size prior; mean paternal & meteral sibship size
0          ! 0/1=Unknown/Known population allele frequency
1         ! Number of runs
2         ! Length of run
0         ! 0/1=Monitor method by Iterate#/Time in second
100000    ! Monitor interval in Iterate# / in seconds
0         ! non-Windows version
1         ! Fulllikelihood
3         ! 1/2/3=low/medium/high Precision for Full likelihood

V@        !Marker names
0@        !Marker types, 0/1 = codominant/dominant
0.000@    !Allelic dropout rate
0.0001@   !false allele rate

OTank_10_Crab_1 1 1 2 1 2 2 2 2 2 2 2 2 1 1 0 0 2 2 1 1 2 2 2 2 2 1 1 1 2 2 2 2 2 1 2 2 1 1 2 2 2 1 2 2 1 1 1 1 2 1 2 1 2 2 1 1 2 2 2 2 2 2 1 1 2 2 1 1 2 2 0 0 2 2 2 2 2 1 2 2 1 1 0 0 1 1 1 1 2 1 1 1 1 1 1 1 2 2 2 2 0 0 2 2 1 1 1 1 2 2 1 1 2 2 2 2 2 1 2 2 0 0 1 1 2 1 1 1 1 1 2 2 1 1 2 2 1 1 1 1 0 0 2 2 2 1 2 2 2 1 1 1 0 0 2 2 2 1 2 1 2 1 2 1 2 2 2 2 2 2 2 1 2 1 2 2 2 2 2 1 1 1 2 1 1 1 2 2 0 0 2 2 2 2 1 1 2 2 2 1 2 2 2 2 2 1 1 1 1 1 0 0 1 1 2 1 2 2 2 2 0 0 0 0 1 1 2 1 0 0 2 1 2 1 1 1 2 1 1 1 0 0 2 2 2 1 2 2 2 2 0 0 2 2 2 1 1 1 1 1 1 1 2 2 0 0 0 0 2 2 2 2 1 1 2 2 2 1 2 2 2 2 1 1 2 2 0 0 2 1 2 2 1 1 1 1 1 1 2 1 2 1 0 0 2 2 2 1 1 1 1 1 2 2 2 2 1 1 1 1 0 0 2 2 2 2 1 1 2 2 2 2 1 1 2 2 2 2 0 0 1 1 2 2 2 2 1 1 1 1 2 1 0 0 0 0 1 1 1 1 2 2 2 2 2 2 2 2 2 2 1 1 2 1 2 1 2 1 2 1 2 2 1 1 2 1 2 2 0 0 2 1 2 1 1 1 2 2 2 1 2 1 2 2 2 2 2 2 1 1 0 0 2 1 2 2 2 2 2 2 2 2 1 1 1 1 2 2 1 1 1 1 2 1 1 1 1 1 1 1 2 2 2 1 2 2 2 1 2 1 2 2 2 2 1 1 1 1 2 1 2 1 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 1 1 1 2 1 2 2 1 1 2 1 0 0 2 2 2 1 2 2 2 2 2 2 2 2 0 0 1 1 2 2 2 2 1 1 2 1 2 2 2 1 2 2 1 1 2 1
OTank_10_Crab_2 0 0 2 2 0 0 0 0 2 2 1 1 0 0 1 1 2 2 0 0 1 1 0 0 2 2 1 1 2 2 0 0 2 2 1 1 0 0 0 0 1 1 2 2 1 1 0 0 2 1 0 0 0 0 0 0 2 2 2 1 2 2 2 1 1 1 1 1 2 2 0 0 1 1 2 2 0 0 2 2 0 0 0 0 1 1 0 0 1 1 2 2 1 1 1 1 1 1 0 0 2 2 2 2 1 1 0 0 0 0 1 1 0 0 2 2 0 0 2 2 1 1 2 2 0 0 0 0 1 1 1 1 2 2 1 1 1 1 2 2 1 1 0 0 2 2 0 0 0 0 2 1 2 2 0 0 2 2 1 1 0 0 2 2 2 2 1 1 1 1 2 2 1 1 0 0 2 2 2 2 0 0 1 1 2 2 2 2 0 0 0 0 0 0 2 2 0 0 0 0 2 2 2 2 1 1 2 2 2 2 2 2 0 0 1 1 1 1 0 0 0 0 2 2 0 0 2 2 0 0 0 0 1 1 2 2 2 2 2 2 2 2 1 1 2 2 0 0 0 0 1 1 1 1 0 0 2 2 0 0 0 0 2 2 2 2 2 2 1 1 1 1 1 1 2 2 2 2 2 2 2 2 0 0 0 0 2 2 0 0 2 2 0 0 1 1 0 0 2 2 2 2 0 0 0 0 0 0 2 2 1 1 0 0 0 0 0 0 0 0 2 2 0 0 1 1 2 2 2 2 2 2 0 0 1 1 2 2 1 1 0 0 1 1 2 2 1 1 2 2 1 1 2 2 2 1 2 2 0 0 2 2 1 1 0 0 2 2 2 2 0 0 0 0 1 1 0 0 0 0 2 2 2 2 0 0 1 1 2 2 0 0 0 0 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 2 2 2 1 2 2 0 0 1 1 1 1 0 0 2 2 2 2 2 2 0 0 0 0 0 0 2 2 2 2 2 1 2 2 1 1 0 0 0 0 1 1 2 1 2 2 2 2 2 2 0 0 2 2 2 2 1 1 2 2 0 0 0 0 2 2 2 2 0 0 2 2 2 2 1 1 2 2 0 0 2 2 2 2 2 2 2 2 2 2 0 0 1 1 0 0 2 2 1 1 0 0 2 2 2 2 2 2 2 2 0 0 0 0

Run Colony analysis on samples

Note: I have to be in the colony directory to run it, so I change my directory in the same code chunk prior to executing the ./colony2s.out script

cd ../results/genotype/colony
./colony2s.out IFN:colony2_rkc.dat

Colony finished! Here are some results:

cat ../results/genotype/colony/rkc_colony.BestCluster

## ClusterIndex Probability          OffspringID             FatherID             MotherID
##            1      0.8318      OTank_10_Crab_1                   *1                   #1
##            1      0.8318      OTank_11_Crab_3                   *1                   #6
##            1      0.8318       OTank_2_Crab_2                  *23                   #1
##            1      0.8318       OTank_5_Crab_3                  *23                   #1
##            1      0.8318       OTank_9_Crab_1                  *23                   #6
##            2      1.0000      OTank_10_Crab_2                   *2                   #2
##            3      0.7791      OTank_10_Crab_3                   *3                   #3
##            3      0.7791      OTank_11_Crab_1                   *4                   #4
##            3      0.7791      OTank_13_Crab_3                   *3                   #9
##            3      0.7791      OTank_16_Crab_4                  *13                  #14
##            3      0.7791      OTank_20_Crab_2                  *13                   #4
##            3      0.7791       OTank_3_Crab_3                   *4                  #25
##            3      0.7791       OTank_9_Crab_4                   *3                   #4
##            4      1.0000      OTank_11_Crab_2                   *5                   #5
##            5      0.8604      OTank_13_Crab_1                   *6                   #7
##            5      0.8604      OTank_18_Crab_3                  *16                   #7
##            6      0.9701      OTank_13_Crab_2                   *7                   #8
##            6      0.9701      OTank_16_Crab_1                  *11                   #8
##            6      0.9701       OTank_3_Crab_1                   *7                  #23
##            6      0.9701       OTank_7_Crab_3                   *7                   #8
##            7      0.6460      OTank_15_Crab_1                   *8                  #10
##            7      0.6460      OTank_18_Crab_2                  *15                  #16
##            7      0.6460       OTank_1_Crab_2                  *18                  #18
##            7      0.6460       OTank_2_Crab_3                  *24                  #16
##            7      0.6460       OTank_4_Crab_1                   *8                  #26
##            7      0.6460       OTank_4_Crab_2                   *8                  #27
##            7      0.6460       OTank_4_Crab_3                   *8                  #16
##            7      0.6460       OTank_5_Crab_1                   *8                  #18
##            8      1.0000      OTank_15_Crab_2                   *9                  #11
##            9      0.9526      OTank_15_Crab_3                  *10                  #12
##           10      1.0000      OTank_16_Crab_2                  *12                  #13
##           11      1.0000      OTank_18_Crab_1                  *14                  #15
##           12      0.9963       OTank_1_Crab_1                  *17                  #17
##           13      0.8213       OTank_1_Crab_3                  *19                  #19
##           14      1.0000      OTank_20_Crab_1                  *20                  #20
##           15      0.7907      OTank_20_Crab_3                  *21                  #21
##           16      1.0000       OTank_2_Crab_1                  *22                  #22
##           17      0.9207       OTank_3_Crab_2                  *25                  #24
##           17      0.9207       OTank_7_Crab_1                  *27                  #24
##           18      1.0000       OTank_5_Crab_2                  *26                  #28
##           19      0.3920       OTank_7_Crab_4                  *28                  #29
##           19      0.3920       OTank_9_Crab_2                  *28                  #29
##           20      1.0000       OTank_9_Crab_3                  *29                  #30

colony.clusters <- read_table("../results/genotype/colony/rkc_colony.BestCluster", col_names=TRUE) %>% clean_names() %>% 
  mutate_all(funs(str_replace(., "\\*|#", ""))) %>%
  mutate(cluster_index=as.numeric(cluster_index), father_id=as.numeric(father_id), mother_id=as.numeric(mother_id), probability=as.numeric(probability)) %>%
  mutate(offspring_id=str_replace(offspring_id, "O", "")) %>% 
  as.data.frame() %>% left_join(sample.info, by = c("offspring_id"="Sample")) %>%
  mutate(Treatment=factor(Treatment, levels=c("Ambient", "Moderate", "Low"))) %>% 
  column_to_rownames("offspring_id") %>% 
  mutate(offspring_id=rownames(.))

## 
## -- Column specification --------------------------------------------------------
## cols(
##   ClusterIndex = col_double(),
##   Probability = col_double(),
##   OffspringID = col_character(),
##   FatherID = col_character(),
##   MotherID = col_character()
## )

save(colony.clusters, file = "../results/genotype/colony/best-cluster-adult")  

father.order <- as.character(c(1,2,5,17,18,19,22,24,27,4,28,20,21,25,29,8,13,6,9,10,11,12,14,15,16,26,3,7,23))
mother.order <- as.character(c(20,21,23,25,26,27,30,4,6,24,29,2,3,5,17,19,22,1,18,8,7,9,10,11,12,13,14,15,28,16))

ggplot(colony.clusters, aes(x = father_id %>% as.character, fill = Treatment)) +
  geom_dotplot(stackgroups = TRUE, binwidth = 1, binpositions = "all") +
  theme_minimal() + scale_x_discrete(limits=father.order) +
  scale_fill_manual(values = c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c")) +
  xlab("Father ID") +
  theme(axis.text.y = element_blank(), axis.title.y = element_blank())

ggplot(colony.clusters, aes(x = mother_id %>% as.character, fill = Treatment)) +
  geom_dotplot(stackgroups = TRUE, binwidth = 1, binpositions = "all") +
  theme_minimal() + scale_x_discrete(limits=mother.order) +
  scale_fill_manual(values = c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c")) +
  xlab("Mother ID") +
  theme(axis.text.y = element_blank(), axis.title.y = element_blank())

# Plot mother ~ father ID 
ggplotly(
  ggplot(colony.clusters, 
         aes(x=father_id %>% as.character, y=mother_id %>% as.character, colour=Treatment, text=offspring_id)) + #size=probability, 
    geom_point(alpha=0.65, size=5, position = position_dodge(width=0.5)) + theme_minimal() + 
    scale_size_continuous(guide="none") + 
    scale_x_discrete(limits=father.order) +
    scale_y_discrete(limits=mother.order) +
    scale_color_manual(values = c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c")) +
    xlab("Father ID") + ylab("Mother ID"), tooltip = "text")

# How many fathers and mothers does each Ph group have? 
colony.clusters %>%
  group_by(Treatment) %>%
  summarise(n_fathers=n_distinct(father_id),n_mothers=n_distinct(mother_id))

## # A tibble: 3 x 3
##   Treatment n_fathers n_mothers
##   <fct>         <int>     <int>
## 1 Ambient          14        14
## 2 Moderate         11        12
## 3 Low              14        13

I used the dotplots to identify parents that contributed multiple offspring in our samples, and selected samples to remove to get rid of siblings.

# Count how many of each treatment remain after removing half and full sibs
`%!in%` = Negate(`%in%`) #function that is the opposite of "%in%"

# Generate a list of samples that should not contain full or half sibs 
nosibs <- (sample.info %>% filter(Sample %!in% c("Tank_13_Crab_2", "Tank_7_Crab_4", "Tank_2_Crab_2", 
               "Tank_11_Crab_1", "Tank_20_Crab_2", "Tank_11_Crab_3", 
               "Tank_3_Crab_2", "Tank_5_Crab_3", "Tank_5_Crab_1", 
               "Tank_7_Crab_3", "Tank_18_Crab_3", "Tank_18_Crab_2", 
               "Tank_4_Crab_3", "Tank_15_Crab_1", "Tank_4_Crab_2", 
               "Tank_10_Crab_3", "Tank_13_Crab_3")))$Sample

# Now double check that we no longer have siblings 
ggplot(colony.clusters %>% filter(offspring_id %in% nosibs), aes(x = father_id %>% as.character, fill = Treatment)) +
  geom_dotplot(stackgroups = TRUE, binwidth = 1, binpositions = "all") +
  theme_minimal() + scale_x_discrete(limits=father.order) +
  scale_fill_manual(values = c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c")) +
  xlab("Father ID") +
  theme(axis.text.y = element_blank(), axis.title.y = element_blank())

ggplot(colony.clusters %>% filter(offspring_id %in% nosibs), aes(x = mother_id %>% as.character, fill = Treatment)) +
  geom_dotplot(stackgroups = TRUE, binwidth = 1, binpositions = "all") +
  theme_minimal() + scale_x_discrete(limits=mother.order) +
  scale_fill_manual(values = c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c")) +
  xlab("Mother ID") +
  theme(axis.text.y = element_blank(), axis.title.y = element_blank())

# How many samples in each treatment remain? 
colony.clusters %>% filter(offspring_id %in% nosibs) %>% group_by(Treatment) %>% tally()

## # A tibble: 3 x 2
##   Treatment     n
##   <fct>     <int>
## 1 Ambient       9
## 2 Moderate      9
## 3 Low           8

Using PCAdapt to detect outlier loci

Read in data

path_to_file <- "../results/genotype/rkc_rnaseq_genotypes-final_miss20.recode.vcf"
filename <- read.pcadapt(path_to_file, type = "vcf")

## Warning in file2other(input, type, match.arg(type.out), match.arg(allele.sep)):
## Converter vcf to pcadapt is deprecated. Please use PLINK for conversion to bed
## (and QC).

## 1 variant(s) have been discarded as they are not SNPs.
## Summary:
## 
##  - input file:               ../results/genotype/rkc_rnaseq_genotypes-final_miss20.recode.vcf
##  - output file:              C:\Users\LAURA~1.SPE\AppData\Local\Temp\Rtmp82cYB0\file22f381f7179a8.pcadapt
## 
##  - number of individuals detected:   43
##  - number of loci detected:      1429
## 
## 1428 lines detected.
## 43 columns detected.

Create annotation vector

This is the order of samples in the vcf

Tank_10_Crab_1  Tank_10_Crab_2  Tank_10_Crab_3  Tank_11_Crab_1  Tank_11_Crab_2  Tank_11_Crab_3  Tank_13_Crab_1  Tank_13_Crab_2  Tank_13_Crab_3  Tank_15_Crab_1  Tank_15_Crab_2  Tank_15_Crab_3  Tank_16_Crab_1  Tank_16_Crab_2  Tank_16_Crab_4  Tank_18_Crab_1  Tank_18_Crab_2  Tank_18_Crab_3  Tank_1_Crab_1   Tank_1_Crab_2   Tank_1_Crab_3   Tank_20_Crab_1  Tank_20_Crab_2  Tank_20_Crab_3  Tank_2_Crab_1   Tank_2_Crab_2   Tank_2_Crab_3   Tank_3_Crab_1   Tank_3_Crab_2   Tank_3_Crab_3   Tank_4_Crab_1   Tank_4_Crab_2   Tank_4_Crab_3   Tank_5_Crab_1   Tank_5_Crab_2   Tank_5_Crab_3   Tank_7_Crab_1   Tank_7_Crab_3   Tank_7_Crab_4   Tank_9_Crab_1   Tank_9_Crab_2   Tank_9_Crab_3   Tank_9_Crab_4

tab.annot.gen$sample.id #good, this order (from the SNPRelate analysis) is the same as in the VCF. Can use this to annotate

##  [1] "Tank_10_Crab_1" "Tank_10_Crab_2" "Tank_10_Crab_3" "Tank_11_Crab_1"
##  [5] "Tank_11_Crab_2" "Tank_11_Crab_3" "Tank_13_Crab_1" "Tank_13_Crab_2"
##  [9] "Tank_13_Crab_3" "Tank_15_Crab_1" "Tank_15_Crab_2" "Tank_15_Crab_3"
## [13] "Tank_16_Crab_1" "Tank_16_Crab_2" "Tank_16_Crab_4" "Tank_18_Crab_1"
## [17] "Tank_18_Crab_2" "Tank_18_Crab_3" "Tank_1_Crab_1"  "Tank_1_Crab_2" 
## [21] "Tank_1_Crab_3"  "Tank_20_Crab_1" "Tank_20_Crab_2" "Tank_20_Crab_3"
## [25] "Tank_2_Crab_1"  "Tank_2_Crab_2"  "Tank_2_Crab_3"  "Tank_3_Crab_1" 
## [29] "Tank_3_Crab_2"  "Tank_3_Crab_3"  "Tank_4_Crab_1"  "Tank_4_Crab_2" 
## [33] "Tank_4_Crab_3"  "Tank_5_Crab_1"  "Tank_5_Crab_2"  "Tank_5_Crab_3" 
## [37] "Tank_7_Crab_1"  "Tank_7_Crab_3"  "Tank_7_Crab_4"  "Tank_9_Crab_1" 
## [41] "Tank_9_Crab_2"  "Tank_9_Crab_3"  "Tank_9_Crab_4"

Choose number k of Principal Components

To choose K, principal component analysis should first be performed with a large enough number of principal components

The ‘scree plot’ displays in decreasing order the percentage of variance explained by each PC. Up to a constant, it corresponds to the eigenvalues in decreasing order. The ideal pattern in a scree plot is a steep curve followed by a bend and a straight line. The eigenvalues that correspond to random variation lie on a straight line whereas the ones that correspond to population structure lie on a steep curve. We recommend to keep PCs that correspond to eigenvalues to the left of the straight line (Cattell’s rule).

The first 8 PC axes could be informative.

x <- pcadapt(input = filename, K = 30, min.maf=0.05)
plot(x, option = "screeplot") + theme_minimal() + scale_x_discrete(limits=seq(1:30))

## Warning: `guides(<scale> = FALSE)` is deprecated. Please use `guides(<scale> =
## "none")` instead.

## Warning: Continuous limits supplied to discrete scale.
## Did you mean `limits = factor(...)` or `scale_*_continuous()`?

Further explore data to determine K

Another option to choose the number of PCs is based on the ‘score plot’ that displays population structure. The score plot displays the projections of the individuals onto the specified principal components. Using the score plot, the choice of K can be limited to the values of K that correspond to a relevant level of population structure.

plot(x, option = "scores", i=1, j=2, pop=tab.annot.gen$Treatment)

## Warning: Use of `df$Pop` is discouraged. Use `Pop` instead.

plot(x, option = "scores", j=1, i=3, pop=tab.annot.gen$Treatment)

## Warning: Use of `df$Pop` is discouraged. Use `Pop` instead.

plot(x, option = "scores", j=1, i=4, pop=tab.annot.gen$Treatment)

## Warning: Use of `df$Pop` is discouraged. Use `Pop` instead.

plot(x, option = "scores", j=1, i=5, pop=tab.annot.gen$Treatment)

## Warning: Use of `df$Pop` is discouraged. Use `Pop` instead.

plot(x, option = "scores", j=1, i=6, pop=tab.annot.gen$Treatment)

## Warning: Use of `df$Pop` is discouraged. Use `Pop` instead.

plot(x, option = "scores", j=1, i=7, pop=tab.annot.gen$Treatment)

## Warning: Use of `df$Pop` is discouraged. Use `Pop` instead.

plot(x, option = "scores", j=1, i=8, pop=tab.annot.gen$Treatment)

## Warning: Use of `df$Pop` is discouraged. Use `Pop` instead.

plot(x, option = "scores", j=1, i=9, pop=tab.annot.gen$Treatment)

## Warning: Use of `df$Pop` is discouraged. Use `Pop` instead.

plot(x, option = "scores", j=1, i=10, pop=tab.annot.gen$Treatment)

## Warning: Use of `df$Pop` is discouraged. Use `Pop` instead.

plot(x, option = "scores", j=1, i=11, pop=tab.annot.gen$Treatment)

## Warning: Use of `df$Pop` is discouraged. Use `Pop` instead.

plot(x, option = "scores", j=1, i=12, pop=tab.annot.gen$Treatment)

## Warning: Use of `df$Pop` is discouraged. Use `Pop` instead.

plot(x, option = "scores", j=1, i=13, pop=tab.annot.gen$Treatment)

## Warning: Use of `df$Pop` is discouraged. Use `Pop` instead.

plot(x, option = "scores", j=1, i=14, pop=tab.annot.gen$Treatment)

## Warning: Use of `df$Pop` is discouraged. Use `Pop` instead.

Certainly looks like the first 5 PC axes result in clusters, and additional PC axes results in no clustering. PC5 does indicate some slight differences between low pH and the other treatments (despite existence of outlier)

x <- pcadapt(filename, K = 5)
summary(x)

##                 Length Class  Mode   
## scores           215   -none- numeric
## singular.values    5   -none- numeric
## loadings        7140   -none- numeric
## zscores         7140   -none- numeric
## af              1428   -none- numeric
## maf             1428   -none- numeric
## chi2.stat       1428   -none- numeric
## stat            1428   -none- numeric
## gif                1   -none- numeric
## pvalues         1428   -none- numeric
## pass            1199   -none- numeric

Identify the outlier on PC5 - is it Tank & Crab 4?

x$scores %>% data.frame() %>% mutate(id=row_number()) %>% arrange(X5)

##               X1           X2          X3           X4            X5 id
## 1   0.0480173574  0.070513482  0.05831606  0.035451143 -0.8217070017  2
## 2  -0.0284995457 -0.006935602 -0.11406864  0.116510654 -0.1871652053 29
## 3  -0.0026658151  0.007998926 -0.23793244  0.145366266 -0.1237986721 25
## 4   0.0201971905  0.299632529  0.25825649  0.063285251 -0.0918344004 26
## 5   0.0097514754  0.008294110 -0.17429159  0.280063023 -0.0674766409 24
## 6  -0.2865907364 -0.157422413  0.16336212 -0.014716501 -0.0557496084 21
## 7  -0.0367947538  0.076752019 -0.22586493 -0.297861882 -0.0525191566 22
## 8  -0.1942682188 -0.145232861  0.05993271 -0.064875828 -0.0457046099 17
## 9   0.2476748966 -0.164953140  0.13787081 -0.040106327 -0.0418612215 43
## 10 -0.0359301495  0.057676781 -0.09806481 -0.050621791 -0.0276530764  5
## 11  0.0213966462  0.063330027 -0.19755454  0.255050817 -0.0272329796 39
## 12  0.0115013150  0.051240604 -0.12169669  0.072586246 -0.0217196343 16
## 13 -0.2320943072 -0.088102948  0.12742570 -0.034770510 -0.0200573742 20
## 14 -0.2238989892 -0.166295653  0.06223642 -0.055318243 -0.0101333292 10
## 15  0.0023357008  0.041242033 -0.18106253  0.228133060 -0.0066345694 41
## 16 -0.2064464341 -0.172119249  0.06827250  0.044002687 -0.0037591295 33
## 17 -0.0554756533  0.089745986 -0.19943837 -0.371889381 -0.0003135586 28
## 18  0.0074051493  0.149453383 -0.16397879 -0.308511346  0.0017218041  8
## 19 -0.2490983377 -0.159031259  0.11179553 -0.020661979  0.0039998440 32
## 20 -0.0197009510  0.087927923 -0.20634741 -0.416054075  0.0047011745 38
## 21 -0.0258774880  0.023172562 -0.02438733  0.164646811  0.0077390378 42
## 22 -0.0110573389  0.373284452  0.27179304 -0.011542324  0.0100439385  1
## 23  0.0255347533  0.109813057 -0.18868614 -0.284685995  0.0105580302 13
## 24 -0.0183845568 -0.015319286 -0.17774058  0.210920053  0.0116566735 11
## 25  0.2407971131 -0.187489871  0.09431895 -0.012817467  0.0154709053  3
## 26  0.2221676620 -0.139692685  0.01729600 -0.025161398  0.0163500894 15
## 27  0.2417489831 -0.169043429  0.07945793 -0.056162290  0.0205570765  9
## 28  0.2786154487 -0.112379696  0.10262905 -0.084928232  0.0212824552  4
## 29  0.0237631907 -0.004564000 -0.10815204  0.063031849  0.0245602268 37
## 30  0.2535740446 -0.192896241  0.10951555 -0.008600957  0.0280038091 30
## 31 -0.0087477866  0.014139872 -0.20997734  0.173734801  0.0386918741 35
## 32 -0.2230822089 -0.102086048  0.10339002 -0.032656042  0.0439392161 31
## 33  0.2732472990 -0.156166009  0.10761114 -0.035697313  0.0530028119 23
## 34  0.0108410427  0.324748639  0.28295508  0.027676482  0.0532539625  6
## 35  0.0201052904  0.296143847  0.17398331  0.048911711  0.0561725357 40
## 36  0.2302250362 -0.121951806  0.10706378 -0.079988055  0.0564911360 12
## 37 -0.2390699596 -0.160786167  0.10355145 -0.023488221  0.0626581028 27
## 38 -0.2266786108 -0.145672136  0.11919649 -0.013722537  0.0667938754 34
## 39  0.0091546026 -0.015943541 -0.10116267  0.031419650  0.1152368391 19
## 40  0.0456386202  0.028047024 -0.10702097  0.113145496  0.1250895438 14
## 41 -0.0003455465  0.319648261  0.21227814  0.013986013  0.1500382603 36
## 42  0.0058109236  0.063115394 -0.07708890  0.106852162  0.2559344309  7
## 43 -0.0299687379  0.058180697 -0.09836331  0.111760510  0.3244047748 18

tab.annot.gen$sample.id[2]

## [1] "Tank_10_Crab_2"

A Manhattan plot displays −log10 of the p-values.

plot(x , option = "manhattan")

Check the expected uniform distribution of the p-values using a Q-Q plot

plot(x, option = "qqplot")

## Warning: `guides(<scale> = FALSE)` is deprecated. Please use `guides(<scale> =
## "none")` instead.

Histogram of p-values confirms that most of the p-values follow an uniform distribution. The excess of small p-values indicates the presence of outliers.

hist(x$pvalues, xlab = "p-values", main = NULL, breaks = 50, col = "orange")

The presence of outliers is also visible when plotting a histogram of the test statistic Dj.

plot(x, option = "stat.distribution") + theme_minimal()

## Warning: Removed 12 rows containing non-finite values (stat_bin).

## Choosing a cutoff for outlier detection

q-values

qval <- qvalue(x$pvalues)$qvalues
alpha <- 0.1
outliers <- which(qval < alpha)
length(outliers)

## [1] 71

Benjamini-Hochberg Procedure

# padj <- p.adjust(x$pvalues,method="BH")
# alpha <- 0.1
# outliers <- which(padj < alpha)
# length(outliers)

Bonferroni correction

# padj <- p.adjust(x$pvalues,method="bonferroni")
# alpha <- 0.1
# outliers <- which(padj < alpha)
# length(outliers)

Association between PCs and outliers

It may be interesting to associate outliers with one of the K principal component to have indication about evolutionary pressure. The function get.pc allows to achieve that:

snp_pc <- get.pc(x, outliers)

x %>% str()

## List of 11
##  $ scores         : num [1:43, 1:5] -0.0111 0.048 0.2408 0.2786 -0.0359 ...
##  $ singular.values: num [1:5] 0.372 0.349 0.309 0.3 0.277
##  $ loadings       : num [1:1428, 1:5] 0.00546 -0.03349 -0.03866 -0.00935 NA ...
##  $ zscores        : num [1:1428, 1:5] 0.353 -2.255 -2.531 -0.627 NA ...
##  $ af             : num [1:1428] 0.3919 0.3571 0.7703 0.1 0.0455 ...
##  $ maf            : num [1:1428] 0.3919 0.3571 0.2297 0.1 0.0455 ...
##  $ chi2.stat      : num [1:1428] 4.98 5.87 6 2.98 NA ...
##  $ stat           : num [1:1428] 6.48 7.64 7.81 3.88 NA ...
##  $ gif            : num 1.3
##  $ pvalues        : num [1:1428] 0.418 0.319 0.306 0.702 NA ...
##  $ pass           : int [1:1199] 1 2 3 4 7 8 9 10 13 14 ...
##  - attr(*, "K")= num 5
##  - attr(*, "method")= chr "mahalanobis"
##  - attr(*, "min.maf")= num 0.05
##  - attr(*, "class")= chr "pcadapt"

snps.outlier <- data.frame(locus=(extract.gt(vcf) %>% rownames())[outliers]) %>%
  inner_join(snps.annot %>% mutate(locus=paste(chrom, start.snp+1, sep="_")),
            by="locus")

SNPs that are outliers and are found withing a DEG

snps.outlier %>% 
  filter(geneID.gene %in% 
           unique(c(rownames(diffex.AM), rownames(diffex.AL), rownames(diffex.ML)))) # 35 SNPs located in DEGs

##                      locus           chrom start.gene end.gene
## 1 HiC_scaffold_21_22644667 HiC_scaffold_21   22642452 22668074
## 2 HiC_scaffold_21_22644673 HiC_scaffold_21   22642452 22668074
## 3   HiC_scaffold_5_2857283  HiC_scaffold_5    2840892  2901512
##                  geneID.gene start.snp  end.snp .source .overlap
## 1 evm.TU.HiC_scaffold_21.266  22644666 22644668       1        2
## 2 evm.TU.HiC_scaffold_21.266  22644672 22644674       1        2
## 3  evm.TU.HiC_scaffold_5.188   2857282  2857284       1        2
##                              id blast_type seq_length        hit_acc
## 1 evm.model.HiC_scaffold_21.266    BLASTX1       1597 XP_045112009.1
## 2 evm.model.HiC_scaffold_21.266    BLASTX1       1597 XP_045112009.1
## 3  evm.model.HiC_scaffold_5.188    BLASTX1       2768 XP_042870173.1
##                                                                                                                                                            hit_desc
## 1                                                                                                                           nephrin-like [Portunus trituberculatus]
## 2                                                                                                                           nephrin-like [Portunus trituberculatus]
## 3 BTB/POZ domain-containing protein 7-like isoform X2 [Penaeus japonicus]\001XP_042870174.1 BTB/POZ domain-containing protein 7-like isoform X2 [Penaeus japonicus]
##   score e_value percent_ident percent_ident.num query_start query_end hit_start
## 1   844   3e-95 225/505 (44%)              0.44         242      1597       242
## 2   844   3e-95 225/505 (44%)              0.44         242      1597       242
## 3  2682   0e+00 579/699 (82%)              0.82           1      1968         4
##   hit_end
## 1     732
## 2     732
## 3     696

SNPs that are outliers & located within genes associated with pH according to WGCNA

snps.outlier %>% 
  left_join(geneInfo %>% select(id, moduleColor, GS.pH, p.GS.pH, match(modules.cor,names(geneInfo)), match(modules.p,names(geneInfo))), by=c("geneID.gene"="id")) %>%
  filter(p.GS.pH < 0.05) 

##                    locus          chrom start.gene end.gene
## 1 HiC_scaffold_5_2857283 HiC_scaffold_5    2840892  2901512
##                 geneID.gene start.snp end.snp .source .overlap
## 1 evm.TU.HiC_scaffold_5.188   2857282 2857284       1        2
##                             id blast_type seq_length        hit_acc
## 1 evm.model.HiC_scaffold_5.188    BLASTX1       2768 XP_042870173.1
##                                                                                                                                                            hit_desc
## 1 BTB/POZ domain-containing protein 7-like isoform X2 [Penaeus japonicus]\001XP_042870174.1 BTB/POZ domain-containing protein 7-like isoform X2 [Penaeus japonicus]
##   score e_value percent_ident percent_ident.num query_start query_end hit_start
## 1  2682       0 579/699 (82%)              0.82           1      1968         4
##   hit_end moduleColor     GS.pH      p.GS.pH  MM.brown   MM.pink MM.lightcyan1
## 1     696        cyan 0.5141655 0.0004955612 0.5817201 0.5423984     0.3426113
##      MM.red   MM.cyan   MM.green MM.darkgreen   p.MM.brown   p.MM.pink
## 1 0.1693808 0.9487437 -0.5823082   -0.1372234 5.334082e-05 0.000206758
##   p.MM.lightcyan1  p.MM.red    p.MM.cyan   p.MM.green p.MM.darkgreen
## 1      0.02634631 0.2835595 1.288083e-21 5.220111e-05      0.3861715

SNPS that are located within genes assigned to pH-associated modules from WGCNA

snps.outlier %>% 
  left_join(geneInfo %>% select(id, moduleColor, GS.pH, p.GS.pH, match(modules.cor,names(geneInfo)), match(modules.p,names(geneInfo))), by=c("geneID.gene"="id")) %>%
  filter(moduleColor %in% modules)

##                      locus           chrom start.gene end.gene
## 1 HiC_scaffold_18_22682683 HiC_scaffold_18   22678823 22688567
## 2  HiC_scaffold_32_4446859 HiC_scaffold_32    4398822  4459370
## 3 HiC_scaffold_33_47080180 HiC_scaffold_33   47070280 47131979
## 4 HiC_scaffold_33_51865876 HiC_scaffold_33   51857638 51883444
## 5   HiC_scaffold_5_2857283  HiC_scaffold_5    2840892  2901512
##                  geneID.gene start.snp  end.snp .source .overlap
## 1  evm.TU.HiC_scaffold_18.25  22682682 22682684       1        2
## 2 evm.TU.HiC_scaffold_32.112   4446858  4446860       1        2
## 3 evm.TU.HiC_scaffold_33.166  47080179 47080181       1        2
## 4 evm.TU.HiC_scaffold_33.180  51865875 51865877       1        2
## 5  evm.TU.HiC_scaffold_5.188   2857282  2857284       1        2
##                              id blast_type seq_length        hit_acc
## 1  evm.model.HiC_scaffold_18.25    BLASTX1       2820 XP_025108096.1
## 2 evm.model.HiC_scaffold_32.112    BLASTX1       3217 XP_042211416.1
## 3 evm.model.HiC_scaffold_33.166    BLASTX1       3016 XP_042212591.1
## 4 evm.model.HiC_scaffold_33.180    BLASTX1       1644 XP_042222493.1
## 5  evm.model.HiC_scaffold_5.188    BLASTX1       2768 XP_042870173.1
##                                                                                                                                                            hit_desc
## 1                                                                                            uncharacterized protein LOC112572570 isoform X2 [Pomacea canaliculata]
## 2                                                                                                        insulin-like growth factor 1 receptor [Homarus americanus]
## 3                                                                              splicing factor, suppressor of white-apricot homolog isoform X2 [Homarus americanus]
## 4                                                     plexin-B-like isoform X1 [Homarus americanus]\001XP_042222494.1 plexin-B-like isoform X1 [Homarus americanus]
## 5 BTB/POZ domain-containing protein 7-like isoform X2 [Penaeus japonicus]\001XP_042870174.1 BTB/POZ domain-containing protein 7-like isoform X2 [Penaeus japonicus]
##   score e_value percent_ident percent_ident.num query_start query_end hit_start
## 1   297   2e-23  75/209 (35%)              0.35        1149      1745        71
## 2   396   2e-34  93/239 (38%)              0.38         115       828        82
## 3   783   7e-84 174/278 (62%)              0.62           2       703        63
## 4  2151   0e+00 441/541 (81%)              0.81           1      1617       971
## 5  2682   0e+00 579/699 (82%)              0.82           1      1968         4
##   hit_end moduleColor       GS.pH      p.GS.pH    MM.brown    MM.pink
## 1     268         red  0.02515869 0.8743375492  0.21341345  0.2881607
## 2     318        pink  0.12110475 0.4448784310  0.06333518  0.2159117
## 3     335        cyan  0.20553934 0.1916064570  0.37782302  0.2098029
## 4    1511       green -0.13062883 0.4096185919 -0.13785539 -0.2303037
## 5     696        cyan  0.51416552 0.0004955612  0.58172012  0.5423984
##   MM.lightcyan1      MM.red    MM.cyan    MM.green MM.darkgreen   p.MM.brown
## 1    0.39371294  0.39440370  0.1716011  0.01262702  -0.32159456 1.747712e-01
## 2   -0.13895654  0.04509928  0.1646446 -0.09128563   0.02349860 6.902821e-01
## 3    0.10474453 -0.16446602  0.5768166 -0.44202372   0.03924483 1.362958e-02
## 4   -0.01105659  0.01519151 -0.3742276  0.37009968  -0.11074849 3.839668e-01
## 5    0.34261128  0.16938078  0.9487437 -0.58230824  -0.13722343 5.334082e-05
##     p.MM.pink p.MM.lightcyan1    p.MM.red    p.MM.cyan   p.MM.green
## 1 0.064225929     0.009889392 0.009749076 2.772024e-01 9.367416e-01
## 2 0.169658893     0.380142977 0.776716511 2.974352e-01 5.653268e-01
## 3 0.182353765     0.509153801 0.297966625 6.376292e-05 3.380859e-03
## 4 0.142293902     0.944596014 0.923928420 1.462528e-02 1.584384e-02
## 5 0.000206758     0.026346310 0.283559497 1.288083e-21 5.220111e-05
##   p.MM.darkgreen
## 1     0.03781992
## 2     0.88256945
## 3     0.80509779
## 4     0.48503678
## 5     0.38617153

Try to make a pretty Manhattan plot - CURRENTLY STUCK

snps.all <- data.frame(locus=extract.gt(vcf) %>% rownames()) %>% 
  separate(locus, sep = "_", into = c("x", "y,", "chrom", "pos"), remove = FALSE) %>% 
  select(locus, chrom, pos) %>% mutate(chrom=as.numeric(chrom), pos=as.numeric(pos))

#manhattan_plot(x, chr.info = snps.all$chrom, snp.info = snps.all$locus) + theme_minimal()

# install.packages("qqman")
# require(qqman)
# 
# snps.all %>% cbind(x$pvalues)
# nrow(snps.all)
# length(x$pvalues)

Identifying outlier loci using R package OutFLANK

OutFLANK’s code to use a VCF as input didn’t work for me (resulted in all NA values instead of genotypes), so here I will manually generate the genotype matrix

Generate genotype matrix from SNPRelate object

• SNPRelate codes alleles this way: “There are four possible values stored in the variable genotype: 0, 1, 2 and 3. For bi-allelic SNP sites, “0” indicates two B alleles, “1” indicates one A allele and one B allele, “2” indicates two A alleles, and “3” is a missing genotype. (When you) take out genotype data with sample and SNP IDs, and four possible values are returned 0, 1, 2 and NA (3 is replaced by NA).

• OutFLANK codes alleles this way: “SNPmat (the input matrix) is an array with a row for each individual in the data set and a column for each locus. This function assumes biallelic (i.e. SNP) data, and the value in each column is either 0, 1 or 2, showing the number of the focal alleles that the individual carries at that locus. (i.e., 2 means that the individual is a homozygote for the focal allele, 0, means that the individual has no copies of that focal allele, and 1 indicates a heterozygote.) For any locus that is unknown for an individual, SNPmat should have a 9 for that locus on that row.”

{r} # # Extract genotype matrix # geno.matrix4outflank <- snpgdsGetGeno(gdsobj="../results/genotype/genotypes.gds", snp.id = snpset.id, with.id=TRUE) # # paste("No. of SNPs for OutFlank analysis: ", ncol(geno.matrix4outflank$genotype), sep="") # paste("No. of samples for OutFlank analysis: ", nrow(geno.matrix4outflank$genotype), sep="") # # # Replace SNPRelate numeric allele coding with character allele coding # # #SNPRelate: # ### 0 = Homozygous for B # ### 1 = Heterozygous # ### 2 = Homozygous for A # ### 3 = Missing data # # #OutFLANK: # ### 0 = No copies of focal allele # ### 1 = Heterozygous # ### 2 = Homozygous # ### 9 = Missing data # # geno.matrix4outflank.recode <- geno.matrix4outflank$genotype %>% as_data_frame() %>% # mutate_all(function(x) { # case_when( # x == 0 ~ 2, # x == 1 ~ 1, # x == 2 ~ 2, # is.na(x) ~ 9)}) %>% # as.matrix() %>% unname() # # # Spot check that recode worked # data.frame(geno.matrix4outflank$genotype %>% as_data_frame() %>% select(V1) %>% as.vector(), # geno.matrix4outflank.recode %>% as_data_frame() %>% select(V1) %>% as.vector) %>% # rename("V1"="snprelate", "V1.1"="outflank") # # looks good # # rownames(geno.matrix4outflank.recode) <- rownames(geno.matrix4outflank) #

Generate genotype matrix using vcfR

The VCF specification allows for genotypes to be delimited with a ‘|’ when they are phased and a ‘/’ when unphased. Phased data has identified which one of the pair of chromosomes holds each allele, whereas unphased doesn’t identify the chromosomes.

Since OutFLANK doesn’t use phasing information, I will treat the genotype info with “|” and “" delimiter as the same.

2 = homozygote for the focal allele (i.e. reference allele) 0 = no copies of that focal allele 1 = heterozygote 9 = locus is unknown for an individual

# Load the data
vcf <- read.vcfR("../results/genotype/rkc_rnaseq_genotypes-final_miss20.recode.vcf", verbose = FALSE )

# Extract genotype matrix 
geno.matrix4outflank <- extract.gt(vcf) %>% as.data.frame()

paste("No. of SNPs for OutFlank analysis: ", nrow(geno.matrix4outflank), sep="") 

## [1] "No. of SNPs for OutFlank analysis: 1429"

paste("No. of samples for OutFlank analysis: ", ncol(geno.matrix4outflank), sep="") 

## [1] "No. of samples for OutFlank analysis: 43"

Here are all the genotype codes in my SNP set

as.matrix(geno.matrix4outflank) %>% table()

## .
##   0/0   0/1   0/2   0|0   0|1   0|2   1/1   1/2   1|1   1|2   2/2   2|2   3|3 
## 21009  6705    85    87  2371    73 13009    22  7819    12    93   124     2

# Replace allele coding with:

#OutFLANK:
### 0 =  No copies of focal allele
### 1 =  Heterozygous
### 2 =  Homozygous
### 9 =  Missing data 

geno.matrix4outflank.recode <- geno.matrix4outflank %>% 
  mutate_all(function(x) {
    case_when(
      x == "0/0" ~ 2, # homozygous
      x == "0/1" ~ 1, # heterozygous 
      x == "0/2" ~ 1, # heterozygous
      x == "0|0" ~ 2, # homozygous 
      x == "0|1" ~ 1, # heterozygous
      x == "0|2" ~ 1, # heterozygous       
      x == "1/1" ~ 0, # no copies
      x == "1/2" ~ 0, # no copies       
      x == "1|1" ~ 0, # no copies 
      x == "1|2" ~ 0, # no copies
      x == "2/2" ~ 0, # no copies       
      x == "2|2" ~ 0, # no copies
      x == "3|3" ~ 0, # no copies        
      is.na(x) ~ 9)}) %>% t() %>% as.data.frame() %>% 
  mutate_if(is.numeric,as.integer)

# And I now only have 0, 1, 2, and 9 in the new matrix 
table(as.matrix(geno.matrix4outflank.recode))

## 
##     0     1     2     9 
## 21081  9234 21096 10036

# I reviewed the new dataframe visually, and still saw some NA's! 

geno.matrix4outflank.recode[is.na(geno.matrix4outflank.recode)]

## integer(0)

Locus names

colnames(geno.matrix4outflank.recode) %>% head()

## [1] "HiC_scaffold_1_2523394" "HiC_scaffold_1_2542157" "HiC_scaffold_1_2647806"
## [4] "HiC_scaffold_1_2970226" "HiC_scaffold_1_3329447" "HiC_scaffold_1_3795100"

Sample ids

Again, double check that my sample order is the same in the tab.annot.gen file as in the genofile (which I used to pull the genotype matrix from)

# check to make sure samples are in the same order in my genotype matrix and the annotation object 
all(rownames(geno.matrix4outflank.recode) == tab.annot.gen$sample.id) #yes, all=TRUE

## [1] TRUE

# this will be my popNames vector 
as.vector(tab.annot.gen$Treatment)

##  [1] "Ambient"  "Ambient"  "Ambient"  "Ambient"  "Ambient"  "Ambient" 
##  [7] "Low"      "Low"      "Low"      "Low"      "Low"      "Low"     
## [13] "Low"      "Low"      "Low"      "Low"      "Low"      "Low"     
## [19] "Ambient"  "Ambient"  "Ambient"  "Moderate" "Moderate" "Moderate"
## [25] "Ambient"  "Ambient"  "Ambient"  "Moderate" "Moderate" "Moderate"
## [31] "Moderate" "Moderate" "Moderate" "Low"      "Low"      "Low"     
## [37] "Ambient"  "Ambient"  "Ambient"  "Moderate" "Moderate" "Moderate"
## [43] "Moderate"

Calculate variables required for OutFLANK() function

outflank.loci <- colnames(geno.matrix4outflank.recode)
outflank.pops <- as.vector(tab.annot.gen$Treatment)
ncol(geno.matrix4outflank.recode) == length(outflank.loci)

## [1] TRUE

nrow(geno.matrix4outflank.recode) == length(outflank.pops)

## [1] TRUE

FstDataFrame <- MakeDiploidFSTMat(SNPmat = geno.matrix4outflank.recode, 
                                  locusNames = outflank.loci, 
                                  popNames = outflank.pops)

## Calculating FSTs, may take a few minutes...

Check for loci with low sample sizes or unusual values of uncorrected FST

I’m unsure what to do here - I have lots of missing data, indicated by higher uncorrected Fst relative to corrected Fst

plot(FstDataFrame$FST, FstDataFrame$FSTNoCorr, 
     xlim=c(-0.01,0.3), ylim=c(-0.01,0.3),
     pch=20)
abline(0,1)

Check if FST distribution looks chi-squared distributed

plot(FstDataFrame$He, FstDataFrame$FSTNoCorr, pch=20, col="grey")

Note how, when all loci are included, this doesn’t look chi-square distributed

hist(FstDataFrame$FSTNoCorr, breaks=200)

Removing low Heterozygosity variants results in a more chi-square looking FST distribution

Not for my data!

hist(FstDataFrame$FSTNoCorr[FstDataFrame$He>0.1], breaks=200)

summary(FstDataFrame$He) #He is very high 

##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##  0.0000  0.4200  0.4533  0.4219  0.4869  0.5000

hist(FstDataFrame$FST, breaks=200)

summary(FstDataFrame$FST)

##     Min.  1st Qu.   Median     Mean  3rd Qu.     Max. 
## -0.09247 -0.05088 -0.02280 -0.00504  0.02591  0.37526

# Run outflank
out1 <- OutFLANK(FstDataFrame, NumberOfSamples=43)

# Visualize results
 OutFLANKResultsPlotter(out1, withOutliers = TRUE,
NoCorr = TRUE, Hmin = 0.1, binwidth = 0.001, Zoom =
FALSE, RightZoomFraction = 0.05, titletext = NULL)

hist(out1$results$pvaluesRightTail)

sum(out1$results$qvalues<0.1, na.rm=TRUE) # how many outliers? 

## [1] 0

summary(out1$results$qvalues) #none! 

##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max.    NA's 
##  0.8375  0.9349  0.9763  0.9652  0.9886  0.9906       5

Additional PCAs

Re-generate PCAs without samples that are related (half- or full-sibs)

# PCA using SNPRelate 
pca.nosibs <- snpgdsPCA(genofile, num.thread=2, autosome.only=FALSE, verbose = TRUE, 
                 need.genmat = TRUE, snp.id =snpset.id, sample.id = nosibs)

## Principal Component Analysis (PCA) on genotypes:
## Excluding 1 SNP (monomorphic: TRUE, MAF: NaN, missing rate: NaN)
##     # of samples: 26
##     # of SNPs: 1,084
##     using 2 threads
##     # of principal components: 32
## PCA:    the sum of all selected genotypes (0,1,2) = 23367
## CPU capabilities: Double-Precision SSE2
## Mon Apr 04 11:45:29 2022    (internal increment: 84280)
## 
[..................................................]  0%, ETC: ---        
[==================================================] 100%, completed, 0s
## Mon Apr 04 11:45:29 2022    Begin (eigenvalues and eigenvectors)
## Mon Apr 04 11:45:29 2022    Done.

pc.percent <- pca.nosibs$varprop*100
head(round(pc.percent, 2)) #This is the proportion variance explained by each PC 

## [1] 7.33 6.39 5.78 5.67 4.92 4.62

tab <- data.frame(sample.id = pca.nosibs$sample.id,
    PC1.gen = pca.nosibs$eigenvect[,1],    # the first eigenvector
    PC2.gen = pca.nosibs$eigenvect[,2],    # the second eigenvector
    PC3.gen = pca.nosibs$eigenvect[,3],    # the third eigenvector
    PC4.gen = pca.nosibs$eigenvect[,4],    # the fourth eigenvector
    PC5.gen = pca.nosibs$eigenvect[,5],    # the fifth eigenvector
    stringsAsFactors = FALSE)

# PCA using prcomp etc., but NOTE that I pull the covariance matrix from the SNPRelate PCA command  
pca.nosibs.princomp.gen <- princomp(covmat=pca.nosibs$genmat, scores=T, cor = F) #specify "covmat" because input is a covariance matrix (not raw data!)
summary(pca.nosibs.princomp.gen)

## Importance of components:
##                            Comp.1     Comp.2    Comp.3     Comp.4     Comp.5
## Standard deviation     1.35360018 1.26404081 1.2019661 1.19057332 1.10863857
## Proportion of Variance 0.07328934 0.06391197 0.0577889 0.05669859 0.04916318
## Cumulative Proportion  0.07328934 0.13720130 0.1949902 0.25168880 0.30085198
##                            Comp.6     Comp.7     Comp.8     Comp.9    Comp.10
## Standard deviation     1.07477372 1.06044423 1.03729163 1.02035087 0.99975865
## Proportion of Variance 0.04620554 0.04498168 0.04303896 0.04164464 0.03998069
## Cumulative Proportion  0.34705752 0.39203920 0.43507815 0.47672279 0.51670348
##                           Comp.11    Comp.12   Comp.13    Comp.14    Comp.15
## Standard deviation     0.98107282 0.96982430 0.9495472 0.94737061 0.93077872
## Proportion of Variance 0.03850016 0.03762237 0.0360656 0.03590044 0.03465396
## Cumulative Proportion  0.55520364 0.59282601 0.6288916 0.66479205 0.69944601
##                           Comp.16    Comp.17    Comp.18    Comp.19    Comp.20
## Standard deviation     0.92414354 0.91946353 0.89164524 0.88659972 0.87668049
## Proportion of Variance 0.03416165 0.03381653 0.03180125 0.03144236 0.03074275
## Cumulative Proportion  0.73360766 0.76742419 0.79922544 0.83066780 0.86141055
##                           Comp.21    Comp.22    Comp.23    Comp.24    Comp.25
## Standard deviation     0.86152493 0.85601648 0.82149124 0.81996460 0.80159661
## Proportion of Variance 0.02968901 0.02931057 0.02699391 0.02689368 0.02570229
## Cumulative Proportion  0.89109955 0.92041012 0.94740404 0.97429771 1.00000000
##                             Comp.26
## Standard deviation     5.372690e-08
## Proportion of Variance 1.154632e-16
## Cumulative Proportion  1.000000e+00

pca.eigenval(pca.nosibs.princomp.gen)[2,1:5] #The Proporation of Variance (aka %variance)  

## Importance of components:

## [1] 0.0732893 0.0639120 0.0577889 0.0566986 0.0491632

screeplot(pca.nosibs.princomp.gen, bstick=TRUE) #PC axes aren't super sign. - just look at PC1 

tab <- data.frame(sample.id = pca.nosibs$sample.id,
    PC1.gen = pca.nosibs.princomp.gen$loadings[,1],    # the first eigenvector
    PC2.gen = pca.nosibs.princomp.gen$loadings[,2],    # the second eigenvector
    PC3.gen = pca.nosibs.princomp.gen$loadings[,3],    # the third eigenvector
    PC4.gen = pca.nosibs.princomp.gen$loadings[,4],    # the fourth eigenvector
    stringsAsFactors = FALSE)

shapiro.test(pca.nosibs.princomp.gen$loadings) #Multivariate normality assumption not met

## 
##  Shapiro-Wilk normality test
## 
## data:  pca.nosibs.princomp.gen$loadings
## W = 0.99086, p-value = 0.0003381

tab.annot.gen.nosibs <- left_join(tab, sample.info, by=c("sample.id"="Sample")) %>% droplevels() %>%
  mutate(Treatment=as.factor(Treatment))
group.nosibs <- as.factor(tab.annot.gen$Treatment)

# PC1 X PC2
ggplot(tab.annot.gen.nosibs, aes(x=PC1.gen, y=PC2.gen)) + 
  geom_point(aes(col=Treatment), size=3.5, alpha=0.75) + 
  theme_minimal() + ggtitle("Genetic Structure, PC1xPC2") + 
  xlab(paste("PC1 (", round(pc.percent[1], digits = 2), "%)", sep="")) + 
  ylab(paste("PC2 (", round(pc.percent[2], digits = 2), "%)", sep="")) + 
  theme(legend.position = "right") + 
  scale_color_manual(values=c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"), name="pH Treatment") +
  guides(colour = guide_legend(override.aes = list(size=3.5))) + 
  stat_ellipse(aes(col=Treatment), size=0.3)

# PC1 X PC3
ggplot(tab.annot.gen.nosibs, aes(x=PC1.gen, y=PC3.gen)) + 
  geom_point(aes(col=Treatment), size=3.5, alpha=0.75) + 
  theme_minimal() + ggtitle("Genetic Structure, PC1xPC3") + 
  xlab(paste("PC1 (", round(pc.percent[1], digits = 2), "%)", sep="")) + 
  ylab(paste("PC3 (", round(pc.percent[3], digits = 2), "%)", sep="")) + 
  theme(legend.position = "right") + 
  scale_color_manual(values=c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"), name="pH Treatment") +
  guides(colour = guide_legend(override.aes = list(size=3.5))) + 
  stat_ellipse(aes(col=Treatment), size=0.3)

# PC1 X PC4
ggplot(tab.annot.gen.nosibs, aes(x=PC1.gen, y=PC4.gen)) + 
  geom_point(aes(col=Treatment), size=3.5, alpha=0.75) + 
  theme_minimal() + ggtitle("Genetic Structure, PC1xPC4") + 
  xlab(paste("PC1 (", round(pc.percent[1], digits = 2), "%)", sep="")) + 
  ylab(paste("PC4 (", round(pc.percent[4], digits = 2), "%)", sep="")) + 
  theme(legend.position = "right") + 
  scale_color_manual(values=c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"), name="pH Treatment") +
  guides(colour = guide_legend(override.aes = list(size=3.5))) + 
  stat_ellipse(aes(col=Treatment), size=0.3)

# PC2 X PC3
ggplot(tab.annot.gen.nosibs, aes(x=PC2.gen, y=PC3.gen)) + 
  geom_point(aes(col=Treatment), size=3.5, alpha=0.75) + 
  theme_minimal() + ggtitle("Genetic Structure, PC2xPC3") + 
  xlab(paste("PC2 (", round(pc.percent[2], digits = 2), "%)", sep="")) + 
  ylab(paste("PC3 (", round(pc.percent[3], digits = 2), "%)", sep="")) + 
  theme(legend.position = "right") + 
  scale_color_manual(values=c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"), name="pH Treatment") +
  guides(colour = guide_legend(override.aes = list(size=3.5))) + 
  stat_ellipse(aes(col=Treatment), size=0.3)

# PC1 X PC2 color coded by tank 
ggplot(tab.annot.gen.nosibs, aes(x=PC1.gen, y=PC2.gen)) + 
  geom_point(aes(col=as.factor(Tank)), size=3.5, alpha=0.75) + 
  theme_minimal() + ggtitle("Genetic Structure, PC1xPC2 (showing tank no.)") + 
  xlab(paste("PC1 (", round(pc.percent[1], digits = 2), "%)", sep="")) + 
  ylab(paste("PC2 (", round(pc.percent[2], digits = 2), "%)", sep="")) + 
  theme(legend.position = "right") + 
  guides(colour = guide_legend(override.aes = list(size=3.5)))

save(tab.annot.gen.nosibs, file="../results/genotype/tab.annot.gen.nosibs")

Re-generate PCAs using high Fst loci only (calculated among pH Treatments)

# PCA using SNPRelate 
pca.fst <- snpgdsPCA(genofile, num.thread=2, autosome.only=FALSE, verbose = TRUE, 
                 need.genmat = TRUE, snp.id =snps.fst)

## Principal Component Analysis (PCA) on genotypes:
## Excluding 0 SNP (monomorphic: TRUE, MAF: NaN, missing rate: NaN)
##     # of samples: 43
##     # of SNPs: 150
##     using 2 threads
##     # of principal components: 32
## PCA:    the sum of all selected genotypes (0,1,2) = 5610
## CPU capabilities: Double-Precision SSE2
## Mon Apr 04 11:45:30 2022    (internal increment: 50960)
## 
[..................................................]  0%, ETC: ---        
[==================================================] 100%, completed, 0s
## Mon Apr 04 11:45:30 2022    Begin (eigenvalues and eigenvectors)
## Mon Apr 04 11:45:30 2022    Done.

pc.percent <- pca.fst$varprop*100
head(round(pc.percent, 2)) #This is the proportion variance explained by each PC 

## [1] 8.02 7.13 6.52 5.74 4.90 4.27

tab <- data.frame(sample.id = pca.fst$sample.id,
    PC1.gen = pca.fst$eigenvect[,1],    # the first eigenvector
    PC2.gen = pca.fst$eigenvect[,2],    # the second eigenvector
    PC3.gen = pca.fst$eigenvect[,3],    # the third eigenvector
    PC4.gen = pca.fst$eigenvect[,4],    # the fourth eigenvector
    PC5.gen = pca.fst$eigenvect[,5],    # the fifth eigenvector
    stringsAsFactors = FALSE)

# PCA using prcomp etc., but NOTE that I pull the covariance matrix from the SNPRelate PCA command  
pca.fst.princomp.gen <- princomp(covmat=pca.fst$genmat, scores=T, cor = F) #specify "covmat" because input is a covariance matrix (not raw data!)
summary(pca.fst.princomp.gen)

## Importance of components:
##                            Comp.1    Comp.2     Comp.3     Comp.4    Comp.5
## Standard deviation     1.83541611 1.7304864 1.65448919 1.55329469 1.4341119
## Proportion of Variance 0.08020839 0.0712996 0.06517463 0.05744582 0.0489685
## Cumulative Proportion  0.08020839 0.1515080 0.21668262 0.27412844 0.3230969
##                            Comp.6     Comp.7     Comp.8     Comp.9    Comp.10
## Standard deviation     1.33964907 1.28665430 1.23467518 1.18270625 1.16225878
## Proportion of Variance 0.04272999 0.03941617 0.03629578 0.03330462 0.03216299
## Cumulative Proportion  0.36582693 0.40524311 0.44153889 0.47484351 0.50700649
##                           Comp.11    Comp.12    Comp.13    Comp.14    Comp.15
## Standard deviation     1.14782402 1.11283425 1.07593331 1.04080895 0.99706051
## Proportion of Variance 0.03136905 0.02948572 0.02756268 0.02579246 0.02366975
## Cumulative Proportion  0.53837554 0.56786126 0.59542394 0.62121639 0.64488615
##                           Comp.16    Comp.17    Comp.18    Comp.19    Comp.20
## Standard deviation     0.97818455 0.97165798 0.94934006 0.92763719 0.92065326
## Proportion of Variance 0.02278202 0.02247903 0.02145825 0.02048835 0.02018101
## Cumulative Proportion  0.66766817 0.69014720 0.71160545 0.73209380 0.75227481
##                           Comp.21   Comp.22    Comp.23    Comp.24    Comp.25
## Standard deviation     0.87143110 0.8607683 0.84065623 0.82993524 0.80521152
## Proportion of Variance 0.01808077 0.0176410 0.01682626 0.01639982 0.01543728
## Cumulative Proportion  0.77035558 0.7879966 0.80482284 0.82122266 0.83665994
##                           Comp.26    Comp.27    Comp.28    Comp.29    Comp.30
## Standard deviation     0.78312340 0.76873256 0.74499054 0.72798200 0.70480935
## Proportion of Variance 0.01460196 0.01407023 0.01321455 0.01261804 0.01182753
## Cumulative Proportion  0.85126190 0.86533213 0.87854668 0.89116472 0.90299225
##                           Comp.31    Comp.32     Comp.33     Comp.34
## Standard deviation     0.67563509 0.65116647 0.645294760 0.623735433
## Proportion of Variance 0.01086864 0.01009566 0.009914413 0.009262997
## Cumulative Proportion  0.91386088 0.92395655 0.933870958 0.943133956
##                            Comp.35     Comp.36     Comp.37     Comp.38
## Standard deviation     0.598288059 0.594366864 0.588195042 0.563834796
## Proportion of Variance 0.008522586 0.008411237 0.008237462 0.007569278
## Cumulative Proportion  0.951656541 0.960067779 0.968305241 0.975874519
##                            Comp.39     Comp.40     Comp.41     Comp.42 Comp.43
## Standard deviation     0.528504252 0.513263469 0.489604738 0.480417817       0
## Proportion of Variance 0.006650399 0.006272366 0.005707448 0.005495269       0
## Cumulative Proportion  0.982524917 0.988797284 0.994504731 1.000000000       1

pca.eigenval(pca.fst.princomp.gen)[2,1:5] #The Proporation of Variance (aka %variance)  

## Importance of components:

## [1] 0.0802084 0.0712996 0.0651746 0.0574458 0.0489685

screeplot(pca.fst.princomp.gen, bstick=TRUE) #PC axes aren't super sign. - just look at PC1 

tab <- data.frame(sample.id = pca.fst$sample.id,
    PC1.gen = pca.fst.princomp.gen$loadings[,1],    # the first eigenvector
    PC2.gen = pca.fst.princomp.gen$loadings[,2],    # the second eigenvector
    PC3.gen = pca.fst.princomp.gen$loadings[,3],    # the third eigenvector
    PC4.gen = pca.fst.princomp.gen$loadings[,4],    # the fourth eigenvector
    stringsAsFactors = FALSE)

shapiro.test(pca.fst.princomp.gen$loadings) #Multivariate normality assumption met

## 
##  Shapiro-Wilk normality test
## 
## data:  pca.fst.princomp.gen$loadings
## W = 0.99827, p-value = 0.05064

tab.annot.gen.fst <- left_join(tab, sample.info, by=c("sample.id"="Sample")) %>% droplevels() %>%
  mutate(Treatment=as.factor(Treatment))
group.fst <- as.factor(tab.annot.gen$Treatment)

# PC1 X PC2
ggplot(tab.annot.gen.fst, aes(x=PC1.gen, y=PC2.gen)) + 
  geom_point(aes(col=Treatment), size=3.5, alpha=0.75) + 
  theme_minimal() + ggtitle("Genetic Structure, PC1xPC2") + 
  xlab(paste("PC1 (", round(pc.percent[1], digits = 2), "%)", sep="")) + 
  ylab(paste("PC2 (", round(pc.percent[2], digits = 2), "%)", sep="")) + 
  theme(legend.position = "right") + 
  scale_color_manual(values=c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"), name="pH Treatment") +
  guides(colour = guide_legend(override.aes = list(size=3.5))) + 
  stat_ellipse(aes(col=Treatment), size=0.3)

# PC1 X PC3
ggplot(tab.annot.gen.fst, aes(x=PC1.gen, y=PC3.gen)) + 
  geom_point(aes(col=Treatment), size=3.5, alpha=0.75) + 
  theme_minimal() + ggtitle("Genetic Structure, PC1xPC3") + 
  xlab(paste("PC1 (", round(pc.percent[1], digits = 2), "%)", sep="")) + 
  ylab(paste("PC3 (", round(pc.percent[3], digits = 2), "%)", sep="")) + 
  theme(legend.position = "right") + 
  scale_color_manual(values=c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"), name="pH Treatment") +
  guides(colour = guide_legend(override.aes = list(size=3.5))) + 
  stat_ellipse(aes(col=Treatment), size=0.3)

# PC1 X PC4
ggplot(tab.annot.gen.fst, aes(x=PC1.gen, y=PC4.gen)) + 
  geom_point(aes(col=Treatment), size=3.5, alpha=0.75) + 
  theme_minimal() + ggtitle("Genetic Structure, PC1xPC4") + 
  xlab(paste("PC1 (", round(pc.percent[1], digits = 2), "%)", sep="")) + 
  ylab(paste("PC4 (", round(pc.percent[4], digits = 2), "%)", sep="")) + 
  theme(legend.position = "right") + 
  scale_color_manual(values=c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"), name="pH Treatment") +
  guides(colour = guide_legend(override.aes = list(size=3.5))) + 
  stat_ellipse(aes(col=Treatment), size=0.3)

# PC2 X PC3
ggplot(tab.annot.gen.fst, aes(x=PC2.gen, y=PC3.gen)) + 
  geom_point(aes(col=Treatment), size=3.5, alpha=0.75) + 
  theme_minimal() + ggtitle("Genetic Structure, PC2xPC3") + 
  xlab(paste("PC2 (", round(pc.percent[2], digits = 2), "%)", sep="")) + 
  ylab(paste("PC3 (", round(pc.percent[3], digits = 2), "%)", sep="")) + 
  theme(legend.position = "right") + 
  scale_color_manual(values=c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"), name="pH Treatment") +
  guides(colour = guide_legend(override.aes = list(size=3.5))) + 
  stat_ellipse(aes(col=Treatment), size=0.3)

# PC1 X PC2 color coded by tank 
ggplot(tab.annot.gen.fst, aes(x=PC1.gen, y=PC2.gen)) + 
  geom_point(aes(col=as.factor(Tank)), size=3.5, alpha=0.75) + 
  theme_minimal() + ggtitle("Genetic Structure, PC1xPC2 (showing tank no.)") + 
  xlab(paste("PC1 (", round(pc.percent[1], digits = 2), "%)", sep="")) + 
  ylab(paste("PC2 (", round(pc.percent[2], digits = 2), "%)", sep="")) + 
  theme(legend.position = "right") + 
  guides(colour = guide_legend(override.aes = list(size=3.5)))

save(tab.annot.gen.fst, file="../results/genotype/tab.annot.gen.fst")