# for OutFLANK software
### Install required package devtools if not installed
if (!("devtools" %in% installed.packages())){install.packages("devtools")}
library(devtools)
### Install required package qvalue if not installed
if (!("qvalue" %in% installed.packages())){
source("http://bioconductor.org/biocLite.R")
biocLite("qvalue")
}
### Install OutFLANK from github if not installed
if (!("OutFLANK" %in% installed.packages())){install_github("whitlock/OutFLANK")}
# Add all required libraries that are installed with install.packages() here
list.of.packages <- c("tidyverse", "reshape2", "plotly", "vcfR", "network", "janitor", "corrplot", "PerformanceAnalytics", "ggpubr", "RColorBrewer", "usedist", "vegan", "forcats", "valr", "pcadapt", "OutFLANK")
# Add all libraries that are installed using BiocManager here
bioconductor.packages <- c("SNPRelate", "DESeq2", "rtracklayer", "qvalue", "SeqArray")
# Install BiocManager if needed
if(!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager")
# Get names of all required packages that aren't installed
new.packages <- list.of.packages[!(list.of.packages %in% installed.packages()[, "Package"])]
new.bioc.packages <- bioconductor.packages[!(bioconductor.packages %in% installed.packages()[, "Package"])]
# Install all new packages
if(length(new.packages)) install.packages(new.packages)
if(length(new.bioc.packages)) BiocManager::install(new.bioc.packages)
# Load all required libraries
all.packages <- c(list.of.packages, bioconductor.packages)
lapply(all.packages, FUN = function(X) {
do.call("require", list(X))
})
source("../references/biostats.R")
sample.info <- read.csv("../data/RCK-exp-design.csv", header=T, na.strings = NA)
load(file = "../references/P.plat.bestblast")
load(file = "../references/P.plat.blast")
load(file = "../references/P.plat.blast.GO")
genes <- read_delim(file = "../references/P.platypus_genes.bed", delim = "\t", col_names = c("chrom", "start", "end", "geneID"))
## Rows: 28287 Columns: 4
## -- Column specification --------------------------------------------------------
## Delimiter: "\t"
## chr (2): chrom, geneID
## dbl (2): start, end
##
## i Use `spec()` to retrieve the full column specification for this data.
## i Specify the column types or set `show_col_types = FALSE` to quiet this message.
#snpgdsClose(genofile)
vcf.fn <- "../results/genotype/rkc_rnaseq_genotypes-filtered-true.vcf.gz"
SNPRelate::snpgdsVCF2GDS(vcf.fn, "../results/genotype/genotypes.gds", method="biallelic.only")
## Start file conversion from VCF to SNP GDS ...
## Method: extracting biallelic SNPs
## Number of samples: 43
## Parsing "../results/genotype/rkc_rnaseq_genotypes-filtered-true.vcf.gz" ...
## import 919505 variants.
## + genotype { Bit2 43x919505, 9.4M } *
## Optimize the access efficiency ...
## Clean up the fragments of GDS file:
## open the file '../results/genotype/genotypes.gds' (13.9M)
## # of fragments: 165
## save to '../results/genotype/genotypes.gds.tmp'
## rename '../results/genotype/genotypes.gds.tmp' (13.9M, reduced: 1.7K)
## # of fragments: 20
snpgdsSummary("../results/genotype/genotypes.gds")
## The file name: C:\Users\laura.spencer\Work\red-king_RNASeq-2022\results\genotype\genotypes.gds
## The total number of samples: 43
## The total number of SNPs: 919505
## SNP genotypes are stored in SNP-major mode (Sample X SNP).
(genofile <- snpgdsOpen("../results/genotype/genotypes.gds"))
## File: C:\Users\laura.spencer\Work\red-king_RNASeq-2022\results\genotype\genotypes.gds (13.9M)
## + [ ] *
## |--+ sample.id { Str8 43 LZMA_ra(29.9%), 193B }
## |--+ snp.id { Int32 919505 LZMA_ra(6.21%), 223.1K }
## |--+ snp.rs.id { Str8 919505 LZMA_ra(0.03%), 285B }
## |--+ snp.position { Int32 919505 LZMA_ra(42.7%), 1.5M }
## |--+ snp.chromosome { Str8 919505 LZMA_ra(0.03%), 4.2K }
## |--+ snp.allele { Str8 919505 LZMA_ra(12.1%), 433.9K }
## |--+ genotype { Bit2 43x919505, 9.4M } *
## \--+ snp.annot [ ]
## |--+ qual { Float32 919505 LZMA_ra(65.4%), 2.3M }
## \--+ filter { Str8 919505 LZMA_ra(0.02%), 829B }
snpset <- snpgdsLDpruning(genofile, maf=.05, missing.rate=0.20, autosome.only=FALSE)
## SNP pruning based on LD:
## Excluding 918,150 SNPs (monomorphic: TRUE, MAF: 0.05, missing rate: 0.2)
## # of samples: 43
## # of SNPs: 1,355
## using 1 thread
## sliding window: 500,000 basepairs, Inf SNPs
## |LD| threshold: 0.2
## method: composite
## Chromosome HiC_scaffold_1: 0.09%, 3/3,379
## Chromosome HiC_scaffold_10: 0.11%, 6/5,432
## Chromosome HiC_scaffold_100: 0.13%, 13/9,741
## Chromosome HiC_scaffold_101: 0.07%, 4/6,016
## Chromosome HiC_scaffold_102: 0.13%, 13/10,263
## Chromosome HiC_scaffold_1027: 2.63%, 1/38
## Chromosome HiC_scaffold_103: 0.11%, 16/14,948
## Chromosome HiC_scaffold_104: 0.11%, 12/11,362
## Chromosome HiC_scaffold_11: 0.12%, 9/7,301
## Chromosome HiC_scaffold_12: 0.10%, 9/9,355
## Chromosome HiC_scaffold_13: 0.11%, 9/8,325
## Chromosome HiC_scaffold_14: 0.08%, 4/4,824
## Chromosome HiC_scaffold_15: 0.16%, 27/16,693
## Chromosome HiC_scaffold_16: 0.05%, 6/11,696
## Chromosome HiC_scaffold_17: 0.11%, 11/10,389
## Chromosome HiC_scaffold_18: 0.13%, 13/9,821
## Chromosome HiC_scaffold_19: 0.12%, 20/16,126
## Chromosome HiC_scaffold_2: 0.14%, 13/9,174
## Chromosome HiC_scaffold_20: 0.11%, 7/6,534
## Chromosome HiC_scaffold_21: 0.11%, 18/15,780
## Chromosome HiC_scaffold_22: 0.23%, 15/6,506
## Chromosome HiC_scaffold_23: 0.12%, 9/7,757
## Chromosome HiC_scaffold_24: 0.05%, 5/9,753
## Chromosome HiC_scaffold_25: 0.14%, 7/4,934
## Chromosome HiC_scaffold_26: 0.11%, 17/15,336
## Chromosome HiC_scaffold_27: 0.11%, 10/9,390
## Chromosome HiC_scaffold_28: 0.12%, 13/11,269
## Chromosome HiC_scaffold_29: 0.16%, 15/9,528
## Chromosome HiC_scaffold_3: 0.16%, 11/6,962
## Chromosome HiC_scaffold_30: 0.09%, 6/6,965
## Chromosome HiC_scaffold_31: 0.13%, 6/4,514
## Chromosome HiC_scaffold_32: 0.11%, 5/4,498
## Chromosome HiC_scaffold_33: 0.16%, 6/3,838
## Chromosome HiC_scaffold_34: 0.07%, 3/4,031
## Chromosome HiC_scaffold_35: 0.20%, 11/5,561
## Chromosome HiC_scaffold_36: 0.33%, 10/3,023
## Chromosome HiC_scaffold_37: 0.16%, 8/4,853
## Chromosome HiC_scaffold_38: 0.25%, 13/5,302
## Chromosome HiC_scaffold_39: 0.20%, 7/3,450
## Chromosome HiC_scaffold_4: 0.09%, 7/7,531
## Chromosome HiC_scaffold_40: 0.35%, 10/2,850
## Chromosome HiC_scaffold_41: 0.14%, 8/5,877
## Chromosome HiC_scaffold_42: 0.18%, 11/6,018
## Chromosome HiC_scaffold_43: 0.15%, 16/10,950
## Chromosome HiC_scaffold_44: 0.06%, 2/3,310
## Chromosome HiC_scaffold_45: 0.08%, 8/9,509
## Chromosome HiC_scaffold_46: 0.05%, 9/18,080
## Chromosome HiC_scaffold_47: 0.10%, 4/4,165
## Chromosome HiC_scaffold_48: 0.13%, 12/9,596
## Chromosome HiC_scaffold_49: 0.15%, 13/8,545
## Chromosome HiC_scaffold_5: 0.14%, 8/5,859
## Chromosome HiC_scaffold_50: 0.08%, 11/13,554
## Chromosome HiC_scaffold_51: 0.15%, 15/10,072
## Chromosome HiC_scaffold_52: 0.33%, 31/9,298
## Chromosome HiC_scaffold_53: 0.09%, 6/6,831
## Chromosome HiC_scaffold_54: 0.15%, 12/7,956
## Chromosome HiC_scaffold_55: 0.26%, 12/4,530
## Chromosome HiC_scaffold_56: 0.05%, 10/20,020
## Chromosome HiC_scaffold_57: 0.08%, 11/14,193
## Chromosome HiC_scaffold_58: 0.15%, 13/8,410
## Chromosome HiC_scaffold_59: 0.15%, 8/5,467
## Chromosome HiC_scaffold_6: 0.18%, 9/5,074
## Chromosome HiC_scaffold_60: 0.10%, 17/16,819
## Chromosome HiC_scaffold_61: 0.12%, 6/4,820
## Chromosome HiC_scaffold_62: 0.10%, 8/8,053
## Chromosome HiC_scaffold_63: 0.13%, 4/3,179
## Chromosome HiC_scaffold_64: 0.15%, 7/4,621
## Chromosome HiC_scaffold_65: 0.11%, 11/10,152
## Chromosome HiC_scaffold_66: 0.11%, 12/11,257
## Chromosome HiC_scaffold_67: 0.09%, 9/9,945
## Chromosome HiC_scaffold_68: 0.06%, 6/10,100
## Chromosome HiC_scaffold_69: 0.07%, 12/17,745
## Chromosome HiC_scaffold_6951: 0.23%, 6/2,622
## Chromosome HiC_scaffold_6958: 0.27%, 1/373
## Chromosome HiC_scaffold_7: 0.15%, 7/4,741
## Chromosome HiC_scaffold_70: 0.04%, 2/4,661
## Chromosome HiC_scaffold_71: 0.17%, 7/4,081
## Chromosome HiC_scaffold_72: 0.12%, 11/9,556
## Chromosome HiC_scaffold_73: 0.20%, 7/3,441
## Chromosome HiC_scaffold_74: 0.14%, 16/11,377
## Chromosome HiC_scaffold_75: 0.15%, 2/1,367
## Chromosome HiC_scaffold_76: 0.08%, 10/11,983
## Chromosome HiC_scaffold_77: 0.12%, 9/7,438
## Chromosome HiC_scaffold_78: 0.08%, 12/14,230
## Chromosome HiC_scaffold_79: 0.14%, 33/23,329
## Chromosome HiC_scaffold_8: 0.20%, 13/6,507
## Chromosome HiC_scaffold_80: 0.14%, 16/11,310
## Chromosome HiC_scaffold_81: 0.10%, 19/19,617
## Chromosome HiC_scaffold_82: 0.09%, 10/11,275
## Chromosome HiC_scaffold_83: 0.09%, 4/4,480
## Chromosome HiC_scaffold_84: 0.10%, 17/17,064
## Chromosome HiC_scaffold_85: 0.09%, 10/10,944
## Chromosome HiC_scaffold_86: 0.16%, 14/8,564
## Chromosome HiC_scaffold_87: 0.16%, 7/4,283
## Chromosome HiC_scaffold_88: 0.14%, 9/6,616
## Chromosome HiC_scaffold_89: 0.12%, 12/10,388
## Chromosome HiC_scaffold_9: 0.15%, 12/7,962
## Chromosome HiC_scaffold_90: 0.14%, 16/11,817
## Chromosome HiC_scaffold_91: 0.13%, 6/4,639
## Chromosome HiC_scaffold_92: 0.05%, 9/17,016
## Chromosome HiC_scaffold_93: 0.25%, 10/4,019
## Chromosome HiC_scaffold_94: 0.06%, 9/14,019
## Chromosome HiC_scaffold_946: 0.27%, 1/372
## Chromosome HiC_scaffold_95: 0.11%, 9/8,341
## Chromosome HiC_scaffold_96: 0.10%, 7/6,741
## Chromosome HiC_scaffold_97: 0.12%, 9/7,479
## Chromosome HiC_scaffold_98: 0.18%, 8/4,454
## Chromosome HiC_scaffold_99: 0.09%, 6/6,788
## 1,085 markers are selected in total.
#snpset.id <- unlist(unname(snpset))
snpset.id <- unlist(snpset)
length(snpset.id) SNPs remain after all filtering stepsSince my .vcf doesn’t include unique SNP IDs, they are assigned unique integers ids by SNPRelate, where 1=first row in .vcf
# take out integer-assigned snp id
snp.id <- read.gdsn(index.gdsn(genofile, "snp.id"))
# # take out unique snp id from original VCF
# snp.id.rs <- read.gdsn(index.gdsn(genofile, "snp.rs.id")) #<-- no unique snp id in original VCF file
# take out snp chromosome
chrom <- read.gdsn(index.gdsn(genofile, "snp.chromosome"))
# take out snp position on chromosome
pos <- read.gdsn(index.gdsn(genofile, "snp.position"))
# take out snp allele
allele <- read.gdsn(index.gdsn(genofile, "snp.allele"))
# Combine data into dataframe
genofile.data <- (cbind(snp.id, chrom, pos, allele)) %>% as.data.frame()
head(genofile.data)
## snp.id chrom pos allele
## 1 1 HiC_scaffold_1 248053 A/C
## 2 2 HiC_scaffold_1 523809 G/A
## 3 3 HiC_scaffold_1 562576 T/C
## 4 4 HiC_scaffold_1 562622 T/A
## 5 5 HiC_scaffold_1 691908 T/C
## 6 6 HiC_scaffold_1 691941 A/C
# Filter for snps retained by SNPRelate after filtering and pruning and annotate
# Also add "start" and "end" columns for use with bed_intersect
genofile.snpset.data <- genofile.data %>% filter(snp.id %in% snpset.id) %>%
mutate(pos=as.numeric(pos)) %>% mutate(start=pos-1, end=pos+1)
#annotate genes containing SNPs
(genofile.snpset.annot <- bed_intersect(x=genes, y=genofile.snpset.data,
suffix = c(".gene", ".snp")) %>%
left_join(P.plat.bestblast %>% select(id_gtf, hit_acc, hit_desc, e_value), by = c("geneID.gene"="id_gtf")) %>%
left_join(P.plat.blast %>% select(geneID, SPID, evalue), by=c("geneID.gene"="geneID")) %>%
left_join(P.plat.blast.GO %>% select(gene_id, protein_names, gene_ontology_biological_process), by=c("geneID.gene"="gene_id")))
## Adding missing grouping variables: `Chr`, `Start`, `End`
## # A tibble: 219 x 20
## chrom start.gene end.gene geneID.gene snp.id.snp pos.snp allele.snp start.snp
## <chr> <dbl> <dbl> <chr> <chr> <dbl> <chr> <dbl>
## 1 HiC_~ 2910342 2972113 evm.TU.HiC~ 1154 2.97e6 G/T 2970225
## 2 HiC_~ 3781588 3889899 evm.TU.HiC~ 1409 3.80e6 C/G 3795099
## 3 HiC_~ 3842675 3867362 evm.TU.HiC~ 5149 3.86e6 C/T 3864354
## 4 HiC_~ 5812471 5861708 evm.TU.HiC~ 6085 5.84e6 C/T 5843372
## 5 HiC_~ 13897140 13930596 evm.TU.HiC~ 19974 1.39e7 C/T 13897148
## 6 HiC_~ 17412158 17447290 evm.TU.HiC~ 31070 1.74e7 T/C 17442642
## 7 HiC_~ 11410480 11536332 evm.TU.HiC~ 28706 1.14e7 C/T 11446041
## 8 HiC_~ 15897444 15934626 evm.TU.HiC~ 29976 1.59e7 T/G 15918693
## 9 HiC_~ 596621 661895 evm.TU.HiC~ 35208 6.02e5 G/T 601714
## 10 HiC_~ 49562504 49597851 evm.TU.HiC~ 46641 4.96e7 A/C 49592021
## # ... with 209 more rows, and 12 more variables: end.snp <dbl>, .overlap <int>,
## # hit_acc <chr>, hit_desc <chr>, e_value <dbl>, Chr <chr>, Start <dbl>,
## # End <dbl>, SPID <chr>, evalue <dbl>, protein_names <chr>,
## # gene_ontology_biological_process <chr>
save(genofile.snpset.annot, file="../results/genotype/genofile.snpset.annot")
# PCA using SNPRelate
pca <- snpgdsPCA(genofile, num.thread=2, autosome.only=FALSE, verbose = TRUE,
need.genmat = TRUE, snp.id =snpset.id )
## Principal Component Analysis (PCA) on genotypes:
## Excluding 0 SNP (monomorphic: TRUE, MAF: NaN, missing rate: NaN)
## # of samples: 43
## # of SNPs: 1,085
## using 2 threads
## # of principal components: 32
## PCA: the sum of all selected genotypes (0,1,2) = 38311
## CPU capabilities: Double-Precision SSE2
## Mon Apr 04 11:44:48 2022 (internal increment: 50960)
##
[..................................................] 0%, ETC: ---
[==================================================] 100%, completed, 0s
## Mon Apr 04 11:44:48 2022 Begin (eigenvalues and eigenvectors)
## Mon Apr 04 11:44:48 2022 Done.
pc.percent <- pca$varprop*100
head(round(pc.percent, 2)) #This is the proportion variance explained by each PC
## [1] 7.38 6.04 4.53 4.41 3.54 2.98
tab <- data.frame(sample.id = pca$sample.id,
PC1.gen = pca$eigenvect[,1], # the first eigenvector
PC2.gen = pca$eigenvect[,2], # the second eigenvector
PC3.gen = pca$eigenvect[,3], # the third eigenvector
PC4.gen = pca$eigenvect[,4], # the fourth eigenvector
PC5.gen = pca$eigenvect[,5], # the fifth eigenvector
stringsAsFactors = FALSE)
# PCA using prcomp etc., but NOTE that I pull the covariance matrix from the SNPRelate PCA command
pca.princomp.gen <- princomp(covmat=pca$genmat, scores=T, cor = F) #specify "covmat" because input is a covariance matrix (not raw data!)
summary(pca.princomp.gen)
## Importance of components:
## Comp.1 Comp.2 Comp.3 Comp.4 Comp.5
## Standard deviation 1.7609224 1.59328104 1.37966351 1.3608923 1.2189634
## Proportion of Variance 0.0738297 0.06044153 0.04532075 0.0440959 0.0353779
## Cumulative Proportion 0.0738297 0.13427124 0.17959199 0.2236879 0.2590658
## Comp.6 Comp.7 Comp.8 Comp.9 Comp.10
## Standard deviation 1.11921352 1.11085182 1.09117071 1.07115188 1.05625688
## Proportion of Variance 0.02982474 0.02938076 0.02834889 0.02731825 0.02656378
## Cumulative Proportion 0.28889052 0.31827128 0.34662017 0.37393842 0.40050220
## Comp.11 Comp.12 Comp.13 Comp.14 Comp.15
## Standard deviation 1.04070166 1.01862965 0.99699440 0.99423362 0.97938836
## Proportion of Variance 0.02578714 0.02470491 0.02366662 0.02353573 0.02283813
## Cumulative Proportion 0.42628934 0.45099425 0.47466087 0.49819659 0.52103472
## Comp.16 Comp.17 Comp.18 Comp.19 Comp.20
## Standard deviation 0.97256307 0.96233073 0.95340204 0.9455444 0.93936279
## Proportion of Variance 0.02252093 0.02204953 0.02164227 0.0212870 0.02100958
## Cumulative Proportion 0.54355565 0.56560519 0.58724746 0.6085345 0.62954404
## Comp.21 Comp.22 Comp.23 Comp.24 Comp.25
## Standard deviation 0.93096798 0.91385628 0.90635280 0.90222933 0.88929695
## Proportion of Variance 0.02063575 0.01988413 0.01955894 0.01938138 0.01882974
## Cumulative Proportion 0.65017979 0.67006392 0.68962286 0.70900423 0.72783397
## Comp.26 Comp.27 Comp.28 Comp.29 Comp.30
## Standard deviation 0.88446492 0.87532622 0.86810790 0.86537120 0.8619020
## Proportion of Variance 0.01862567 0.01824276 0.01794313 0.01783017 0.0176875
## Cumulative Proportion 0.74645964 0.76470240 0.78264553 0.80047570 0.8181632
## Comp.31 Comp.32 Comp.33 Comp.34 Comp.35
## Standard deviation 0.83704102 0.83544051 0.82912680 0.82005135 0.81554079
## Proportion of Variance 0.01668185 0.01661812 0.01636789 0.01601153 0.01583588
## Cumulative Proportion 0.83484505 0.85146317 0.86783106 0.88384259 0.89967846
## Comp.36 Comp.37 Comp.38 Comp.39 Comp.40
## Standard deviation 0.80427816 0.79714408 0.78797199 0.77977189 0.7655316
## Proportion of Variance 0.01540151 0.01512949 0.01478333 0.01447724 0.0139533
## Cumulative Proportion 0.91507997 0.93020946 0.94499279 0.95947004 0.9734233
## Comp.41 Comp.42 Comp.43
## Standard deviation 0.75019505 0.74392696 1.071488e-09
## Proportion of Variance 0.01339982 0.01317684 2.733540e-20
## Cumulative Proportion 0.98682316 1.00000000 1.000000e+00
pca.eigenval(pca.princomp.gen)[2,1:5] #The Proporation of Variance (aka %variance)
## Importance of components:
## [1] 0.0738297 0.0604415 0.0453207 0.0440959 0.0353779
screeplot(pca.princomp.gen, bstick=TRUE) #PC axes aren't super sign. - just look at PC1
tab <- data.frame(sample.id = pca$sample.id,
PC1.gen = pca.princomp.gen$loadings[,1], # the first eigenvector
PC2.gen = pca.princomp.gen$loadings[,2], # the second eigenvector
PC3.gen = pca.princomp.gen$loadings[,3], # the third eigenvector
PC4.gen = pca.princomp.gen$loadings[,4], # the fourth eigenvector
PC5.gen = pca.princomp.gen$loadings[,5], # the fourth eigenvector
stringsAsFactors = FALSE)
shapiro.test(pca.princomp.gen$loadings) #Multivariate normality assumption not met
##
## Shapiro-Wilk normality test
##
## data: pca.princomp.gen$loadings
## W = 0.99471, p-value = 3.756e-06
tab.annot.gen <- left_join(tab, sample.info, by=c("sample.id"="Sample")) %>% droplevels() %>%
mutate(Treatment=as.factor(Treatment))
group <- as.factor(tab.annot.gen$Treatment)
RV <- snpgdsSampMissRate(genofile, snp.id = snpset.id)
names(RV) <- pca$sample.id
barplot(RV, las = 2, cex.names = .5, col = c("#2c7bb6", "#d7191c", "#fdae61")[group])
title(ylab = "Sample Missingness (%)")
legend("top", legend=levels(group), col=c("#2c7bb6", "#d7191c", "#fdae61"), pch=19, ncol=3, cex=0.6, pt.cex=1)
# Add missingness rate to annotated PCA results file
tab.annot.gen$missingness <- RV
tab.annot.gen %>% mutate(Treatment=factor(Treatment, levels=c("Ambient", "Moderate", "Low"))) %>%
ggplot(aes(x=Treatment, y=missingness, fill=Treatment)) + geom_violin(alpha=0.75) +
geom_jitter(col="black", width = 0.15) +
theme_minimal() +
stat_summary(fun.y=mean, geom="point", shape=8, size=4, color="black", fill="black") +
scale_fill_manual(values=c(Ambient="#2c7bb6",
Moderate="#fdae61", Low="#d7191c"), name="pH Treatment") +
ggtitle(paste("% Missing Rate for retained SNPs, by pH Treatment ",
"(No. loci = ", length(snpset.id), ")", sep="")) +
geom_text(data=tab.annot.gen %>% group_by(Treatment) %>%
summarize(mean=mean(missingness)),
aes(x=Treatment, y=c(0.45, 0.31, 0.39), label=round(mean, 2)))
## Warning: `fun.y` is deprecated. Use `fun` instead.
# There's a lot more missing SNP data from the ambient groups
# PC1 X PC2
ggplot(tab.annot.gen, aes(x=PC1.gen, y=PC2.gen, size=missingness)) +
geom_point(aes(col=Treatment), alpha=0.75) + #size=3.5,
theme_minimal() + ggtitle("Genetic Structure, PC1xPC2") +
xlab(paste("PC1 (", round(pc.percent[1], digits = 2), "%)", sep="")) +
ylab(paste("PC2 (", round(pc.percent[2], digits = 2), "%)", sep="")) +
theme(legend.position = "right") +
scale_color_manual(values=c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"), name="pH Treatment") +
guides(colour = guide_legend(override.aes = list(size=3.5))) +
stat_ellipse(aes(col=Treatment), size=0.3)
# PC1 X PC3
ggplot(tab.annot.gen, aes(x=PC3.gen, y=PC1.gen, size=missingness)) +
geom_point(aes(col=Treatment), alpha=0.75) +
theme_minimal() + ggtitle("Genetic Structure, PC1xPC3") +
xlab(paste("PC3 (", round(pc.percent[3], digits = 2), "%)", sep="")) +
ylab(paste("PC1 (", round(pc.percent[1], digits = 2), "%)", sep="")) +
theme(legend.position = "right") +
scale_color_manual(values=c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"), name="pH Treatment") +
guides(colour = guide_legend(override.aes = list(size=3.5))) +
stat_ellipse(aes(col=Treatment), size=0.3)
# PC1 X PC4
ggplot(tab.annot.gen, aes(x=PC4.gen, y=PC1.gen, size=missingness)) +
geom_point(aes(col=Treatment), alpha=0.75) +
theme_minimal() + ggtitle("Genetic Structure, PC1xPC4") +
xlab(paste("PC4 (", round(pc.percent[4], digits = 2), "%)", sep="")) +
ylab(paste("PC1 (", round(pc.percent[1], digits = 2), "%)", sep="")) +
theme(legend.position = "right") +
scale_color_manual(values=c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"), name="pH Treatment") +
guides(colour = guide_legend(override.aes = list(size=3.5))) +
stat_ellipse(aes(col=Treatment), size=0.3)
# PC1 X PC5
ggplot(tab.annot.gen, aes(x=PC5.gen, y=PC1.gen, size=missingness)) +
geom_point(aes(col=Treatment), alpha=0.75) +
theme_minimal() + ggtitle("Genetic Structure, PC1xPC4") +
xlab(paste("PC5 (", round(pc.percent[5], digits = 2), "%)", sep="")) +
ylab(paste("PC1 (", round(pc.percent[1], digits = 2), "%)", sep="")) +
theme(legend.position = "right") +
scale_color_manual(values=c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"), name="pH Treatment") +
guides(colour = guide_legend(override.aes = list(size=3.5))) +
stat_ellipse(aes(col=Treatment), size=0.3)
# PC2 X PC3
ggplot(tab.annot.gen, aes(x=PC2.gen, y=PC3.gen, size=missingness)) +
geom_point(aes(col=Treatment), alpha=0.75) +
theme_minimal() + ggtitle("Genetic Structure, PC2xPC3") +
xlab(paste("PC2 (", round(pc.percent[2], digits = 2), "%)", sep="")) +
ylab(paste("PC3 (", round(pc.percent[3], digits = 2), "%)", sep="")) +
theme(legend.position = "right") +
scale_color_manual(values=c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"), name="pH Treatment") +
guides(colour = guide_legend(override.aes = list(size=3.5))) +
stat_ellipse(aes(col=Treatment), size=0.3)
# PC1 X PC2 color coded by tank
ggplot(tab.annot.gen, aes(x=PC1.gen, y=PC2.gen, size=missingness)) +
geom_point(aes(col=as.factor(Tank)), alpha=0.75) +
theme_minimal() + ggtitle("Genetic Structure, PC1xPC2 (showing tank no.)") +
xlab(paste("PC1 (", round(pc.percent[1], digits = 2), "%)", sep="")) +
ylab(paste("PC2 (", round(pc.percent[2], digits = 2), "%)", sep="")) +
theme(legend.position = "right") +
guides(colour = guide_legend(override.aes = list(size=3.5)))
save(tab.annot.gen, file="../results/genotype/tab.annot.gen")
ggplot(tab.annot.gen %>% pivot_longer(cols=starts_with("PC"), names_to = "PC.axis", values_to = "PC.loc"),
aes(x=abs(PC.loc), y=missingness, col=Treatment)) + geom_point(alpha=0.75) +
theme_minimal() +
ggtitle("Correlation between % of SNPs missing (x) and abs(PC scores) (y) for each sample\nQuestion: do samples with many missing SNPs congregate near 0?") +
theme(legend.position = "bottom") + stat_smooth(geom="smooth", method="lm", se=FALSE, size=0.5, aes(group=Treatment)) +
scale_color_manual(values=c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"), name="pH Treatment") +
guides(colour = guide_legend(override.aes = list(size=3.5))) +
stat_cor(method = "pearson", show.legend=FALSE, size=2.5) +
facet_wrap(~PC.axis, scales = "free")
## `geom_smooth()` using formula 'y ~ x'
pca$genmat %>% hist(breaks=100, main="Histogram of genetic covariance\nfrom SNPRelate")
## Relatedness Analysis using SNPRelate
ID1: the id of the first individual ID2: the id of the second individual k0: the probability of sharing ZERO alleles k1: the probability of sharing ONE alleles kinship: kinship coefficient
ibd.mle <- snpgdsIBDMLE(genofile, snp.id=snpset.id, num.thread=2, autosome.only = F)
## Identity-By-Descent analysis (MLE) on genotypes:
## Excluding 0 SNP (monomorphic: TRUE, MAF: NaN, missing rate: NaN)
## # of samples: 43
## # of SNPs: 1,085
## using 2 threads
## MLE IBD: the sum of all selected genotypes (0,1,2) = 38311
## MLE IBD: Mon Apr 04 11:44:52 2022 0%
# Kinship metric
ibd.mle.coeff <- snpgdsIBDSelection(ibd.mle)
head(ibd.mle.coeff)
## ID1 ID2 k0 k1 niter kinship
## 1 Tank_10_Crab_1 Tank_10_Crab_2 0.8665374 1.019817e-06 59 0.06673106
## 2 Tank_10_Crab_1 Tank_10_Crab_3 0.9758481 4.886309e-07 82 0.01207585
## 3 Tank_10_Crab_1 Tank_11_Crab_1 0.9583867 4.321570e-06 91 0.02080557
## 4 Tank_10_Crab_1 Tank_11_Crab_2 0.9031104 2.926246e-06 80 0.04844408
## 5 Tank_10_Crab_1 Tank_11_Crab_3 0.6841462 5.941910e-02 248 0.14307214
## 6 Tank_10_Crab_1 Tank_13_Crab_1 0.9231537 5.672827e-06 105 0.03842175
hist(ibd.mle.coeff$kinship, breaks = 100)
kinship <- ibd.mle.coeff %>%
left_join(sample.info %>% select(Sample, Treatment), by=c("ID1"="Sample")) %>%
rename("Treatment"="Treatment1") %>%
left_join(sample.info %>% select(Sample, Treatment), by=c("ID2"="Sample")) %>%
rename("Treatment"="Treatment2") %>%
mutate(contrast=case_when(
Treatment1 == Treatment2 ~ "same",
Treatment1 != Treatment2 ~ "different")) %>%
mutate(contrast.pairwise=case_when(
Treatment1 == "Ambient" & Treatment2 == "Ambient" ~ "Amb.Amb",
Treatment2 == "Ambient" & Treatment1 == "Ambient" ~ "Amb.Amb",
Treatment1 == "Moderate" & Treatment2 == "Moderate" ~ "Mod.Mod",
Treatment2 == "Moderate" & Treatment1 == "Moderate" ~ "Mod.Mod",
Treatment1 == "Low" & Treatment2 == "Low" ~ "Low.Low",
Treatment2 == "Low" & Treatment1 == "Low" ~ "Low.Low",
Treatment1 == "Ambient" & Treatment2 == "Moderate" ~ "Amb.Mod",
Treatment2 == "Ambient" & Treatment1 == "Moderate" ~ "Amb.Mod",
Treatment1 == "Ambient" & Treatment2 == "Low" ~ "Amb.Low",
Treatment2 == "Ambient" & Treatment1 == "Low" ~ "Amb.Low",
Treatment1 == "Moderate" & Treatment2 == "Low" ~ "Mod.Low",
Treatment2 == "Moderate" & Treatment1 == "Low" ~ "Mod.Low")) %>%
mutate(contrast.pairwise=factor(contrast.pairwise, levels=c("Amb.Amb", "Mod.Mod", "Low.Low", "Amb.Mod", "Amb.Low", "Mod.Low")))
ggplot(kinship, aes(x=contrast.pairwise, y=kinship, fill=contrast.pairwise)) +
geom_violin() +
theme_minimal() +
ggtitle("Kindship coefficient by treatment contrast") +
geom_text(data=kinship %>% group_by(contrast.pairwise) %>%
summarize(mean=mean(kinship)),
aes(x=contrast.pairwise, y=mean+.11, label=round(mean, 3)))
ggplot(kinship, aes(x=contrast, y=kinship, fill=contrast)) +
geom_violin() +
theme_minimal() +
ggtitle("Kindship coefficient for individuals from \ndifferent treatment or same treatment") +
geom_text(data=kinship %>% group_by(contrast) %>%
summarize(mean=mean(kinship)),
aes(x=contrast, y=mean+.12, label=round(mean, 4)))
Use SNPRelate to calculate the fraction of identity by state for each pair of samples
# To perform cluster analysis on the matrix of genome-wide IBS pairwise distances,
# and determine the groups by a permutation score.
# Result= only 1 group (?)
ibs.hc <- snpgdsHCluster(snpgdsIBS(genofile, snp.id=snpset.id, num.thread=2, autosome.only=FALSE))
## Identity-By-State (IBS) analysis on genotypes:
## Excluding 0 SNP (monomorphic: TRUE, MAF: NaN, missing rate: NaN)
## # of samples: 43
## # of SNPs: 1,085
## using 2 threads
## IBS: the sum of all selected genotypes (0,1,2) = 38311
## Mon Apr 04 11:44:53 2022 (internal increment: 65536)
##
[..................................................] 0%, ETC: ---
[==================================================] 100%, completed, 0s
## Mon Apr 04 11:44:53 2022 Done.
rv <- snpgdsCutTree(ibs.hc)
## Determine groups by permutation (Z threshold: 15, outlier threshold: 5):
## Create 1 groups.
plot(rv$dendrogram, leaflab="none", main="HapMap Phase II")
# Determine groups of individuals by treatment information
rv2 <- snpgdsCutTree(ibs.hc, samp.group=tab.annot.gen$Treatment)
## Create 3 groups.
plot(rv2$dendrogram, leaflab="none", main="HapMap Phase II")
legend("bottom", legend=levels(group), col=1:nlevels(group), pch=19, ncol=3, cex=0.6, pt.cex=1)
Genetic relationship matrix
AF.ambient <- snpgdsSNPRateFreq(genofile, snp.id=snpset.id, sample.id=subset(tab.annot.gen, Treatment=="Ambient")$sample.id, with.id = TRUE)
AF.moderate <- snpgdsSNPRateFreq(genofile, snp.id=snpset.id, sample.id=subset(tab.annot.gen, Treatment=="Moderate")$sample.id, with.id = TRUE)
AF.low <- snpgdsSNPRateFreq(genofile, snp.id=snpset.id, sample.id=subset(tab.annot.gen, Treatment=="Low")$sample.id, with.id = TRUE)
AFs <- rbind(
do.call(cbind.data.frame, AF.ambient[c("snp.id", "AlleleFreq", "MinorFreq", "MissingRate")]) %>%
mutate(Treatment=as.factor("Ambient")),
do.call(cbind.data.frame, AF.moderate[c("snp.id", "AlleleFreq", "MinorFreq", "MissingRate")]) %>%
mutate(Treatment=as.factor("Moderate")),
do.call(cbind.data.frame, AF.low[c("snp.id", "AlleleFreq", "MinorFreq", "MissingRate")]) %>%
mutate(Treatment=as.factor("Low")))
ggplot(AFs, aes(x=Treatment, y=AlleleFreq, fill=Treatment)) + geom_violin(trim = F, alpha=0.5) +
theme_minimal() +
stat_summary(fun.y=mean, geom="point", shape=8, size=4, color="black", fill="black") +
xlab("pH exposure") + ylab("Allele Frequency") +
scale_fill_manual(values = c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c")) +
ggtitle(paste("Major Allele Frequency by pH Treatment\n",
"(No. loci = ", length(snpset.id), ")", sep="")) +
geom_text(data=AFs %>% group_by(Treatment) %>%
summarize(mean=mean(AlleleFreq)),
aes(x=Treatment, y=mean+.1, label=round(mean, 3)))
## Warning: `fun.y` is deprecated. Use `fun` instead.
ggplot(AFs, aes(x=Treatment, y=MinorFreq, fill=Treatment)) +
geom_violin(trim = F, alpha=0.5) +
theme_minimal() +
stat_summary(fun.y=mean, geom="point", shape=8, size=4, color="black", fill="black") +
xlab("pH exposure") + ylab("Allele Frequency") +
scale_fill_manual(values = c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c")) +
ggtitle(paste("Minor Allele Frequency by pH Treatment\n",
"(No. loci = ", length(snpset.id), ")", sep="")) +
geom_text(data=AFs %>% group_by(Treatment) %>%
summarize(mean=mean(MinorFreq)),
aes(x=Treatment, y=mean+.1, label=round(mean, 3)))
## Warning: `fun.y` is deprecated. Use `fun` instead.
# Fst among all 3 treatments
Fst <- snpgdsFst(genofile, snp.id=snpset.id,
sample.id=tab.annot.gen$sample.id,
population=tab.annot.gen$Treatment,
method="W&C84", autosome.only=FALSE, with.id = TRUE)
## Fst estimation on genotypes:
## Excluding 0 SNP (monomorphic: TRUE, MAF: NaN, missing rate: NaN)
## # of samples: 43
## # of SNPs: 1,085
## Method: Weir & Cockerham, 1984
## # of Populations: 3
## Ambient (15), Low (15), Moderate (13)
paste("Weir and Cockerham mean Fst estimate, all treatments compared: ", round(Fst$MeanFst, 5))
## [1] "Weir and Cockerham mean Fst estimate, all treatments compared: 0.01975"
hist(Fst$FstSNP, breaks = 75, main="Fst distribution", col="dodgerblue3")
Fst.AM <- snpgdsFst(genofile, snp.id=snpset.id,
sample.id=subset(tab.annot.gen, Treatment %in% c("Ambient", "Moderate"))$sample.id,
population=droplevels(subset(tab.annot.gen, Treatment %in% c("Ambient", "Moderate"))$Treatment),
method="W&C84", autosome.only=FALSE, with.id = TRUE)
## Fst estimation on genotypes:
## Excluding 1 SNP (monomorphic: TRUE, MAF: NaN, missing rate: NaN)
## # of samples: 28
## # of SNPs: 1,084
## Method: Weir & Cockerham, 1984
## # of Populations: 2
## Ambient (15), Moderate (13)
paste("Weir and Cockerham mean Fst estimate, Ambient vs Moderate: ", round(Fst.AM$MeanFst, 5))
## [1] "Weir and Cockerham mean Fst estimate, Ambient vs Moderate: 0.01906"
hist(Fst.AM$FstSNP, breaks = 75, main="Fst distribution", col="dodgerblue3")
Fst.AL <- snpgdsFst(genofile, snp.id=snpset.id,
sample.id=subset(tab.annot.gen, Treatment %in% c("Ambient", "Low"))$sample.id,
population=droplevels(subset(tab.annot.gen, Treatment %in% c("Ambient", "Low"))$Treatment),
method="W&C84", autosome.only=FALSE, with.id = TRUE)
## Fst estimation on genotypes:
## Excluding 0 SNP (monomorphic: TRUE, MAF: NaN, missing rate: NaN)
## # of samples: 30
## # of SNPs: 1,085
## Method: Weir & Cockerham, 1984
## # of Populations: 2
## Ambient (15), Low (15)
paste("Weir and Cockerham mean Fst estimate, Ambient vs Low: ", round(Fst.AL$MeanFst, 5))
## [1] "Weir and Cockerham mean Fst estimate, Ambient vs Low: 0.01882"
hist(Fst.AL$FstSNP, breaks = 75, main="Fst distribution", col="dodgerblue3")
Fst.ML <- snpgdsFst(genofile, snp.id=snpset.id,
sample.id=subset(tab.annot.gen, Treatment %in% c("Moderate", "Low"))$sample.id,
population=droplevels(subset(tab.annot.gen, Treatment %in% c("Moderate", "Low"))$Treatment),
method="W&C84", autosome.only=FALSE, with.id = TRUE)
## Fst estimation on genotypes:
## Excluding 1 SNP (monomorphic: TRUE, MAF: NaN, missing rate: NaN)
## # of samples: 28
## # of SNPs: 1,084
## Method: Weir & Cockerham, 1984
## # of Populations: 2
## Low (15), Moderate (13)
paste("Weir and Cockerham mean Fst estimate, Moderate vs Low: ", round(Fst.ML$MeanFst, 5))
## [1] "Weir and Cockerham mean Fst estimate, Moderate vs Low: 0.01507"
hist(Fst.ML$FstSNP, breaks = 75, main="Fst distribution", col="dodgerblue3")
Fsts <- rbind(
do.call(cbind.data.frame, Fst[c("snp.id", "FstSNP")]) %>% mutate(contrast=as.factor("all")),
do.call(cbind.data.frame, Fst.AM[c("snp.id", "FstSNP")]) %>% mutate(contrast=as.factor("AvsM")),
do.call(cbind.data.frame, Fst.AL[c("snp.id", "FstSNP")]) %>% mutate(contrast=as.factor("AvsL")),
do.call(cbind.data.frame, Fst.ML[c("snp.id", "FstSNP")]) %>% mutate(contrast=as.factor("MvsL")))
ggplot(Fsts, aes(x=contrast, y=FstSNP, fill=contrast)) + geom_violin(trim = F) +
stat_summary(fun.y=mean, geom="point", shape=8, size=3.5, color="black", fill="black") +
ggtitle(paste("SNP Fst, Adults by pCO2 treatment\n", "(No. loci = ", length(snpset.id), ")", sep="")) +
geom_text(data=Fsts %>% group_by(contrast) %>% summarize(mean=mean(FstSNP)), aes(x=contrast, y=.65, label=round(mean, 3)))
## Warning: `fun.y` is deprecated. Use `fun` instead.
hist(Fsts$FstSNP, breaks = 100)
# Identify Fst outliers via boxplot
out.min <- (boxplot(Fsts$FstSNP))$out %>% summary() %>% as.matrix() %>% t() %>% as.data.frame() %>% select("Min.") %>% unlist()
Fsts %>% filter(FstSNP >=out.min) %>% select(snp.id) %>% unique() %>% nrow() #42 loci that have outlying Fst values (>= 0.1680)
## [1] 150
snps.fst <- Fsts %>% filter(FstSNP >=out.min) %>% select(snp.id) %>% unique() %>% pull(snp.id)
out.min) and are located within genesgenofile.snpset.annot %>% filter(snp.id.snp %in% snps.fst)
## # A tibble: 34 x 20
## chrom start.gene end.gene geneID.gene snp.id.snp pos.snp allele.snp start.snp
## <chr> <dbl> <dbl> <chr> <chr> <dbl> <chr> <dbl>
## 1 HiC_~ 596621 661895 evm.TU.HiC~ 35208 6.02e5 G/T 601714
## 2 HiC_~ 62721886 62793739 evm.TU.HiC~ 106946 6.28e7 A/G 62771253
## 3 HiC_~ 42153803 42166880 evm.TU.HiC~ 100254 4.22e7 T/C 42164945
## 4 HiC_~ 63475710 63493992 evm.TU.HiC~ 107289 6.35e7 C/T 63493926
## 5 HiC_~ 22787616 22804029 evm.TU.HiC~ 127818 2.28e7 A/G 22801071
## 6 HiC_~ 4908579 4943516 evm.TU.HiC~ 192915 4.92e6 A/G 4918262
## 7 HiC_~ 20580694 20611387 evm.TU.HiC~ 208389 2.06e7 A/C 20590562
## 8 HiC_~ 39640378 39652156 evm.TU.HiC~ 250239 3.96e7 G/A 39640525
## 9 HiC_~ 21261357 21263564 evm.TU.HiC~ 244640 2.13e7 C/T 21261389
## 10 HiC_~ 34063545 34124323 evm.TU.HiC~ 270604 3.41e7 T/A 34124236
## # ... with 24 more rows, and 12 more variables: end.snp <dbl>, .overlap <int>,
## # hit_acc <chr>, hit_desc <chr>, e_value <dbl>, Chr <chr>, Start <dbl>,
## # End <dbl>, SPID <chr>, evalue <dbl>, protein_names <chr>,
## # gene_ontology_biological_process <chr>
# lbls <- paste("PC", 1:4, "\n", format(pc.percent[1:4], digits=2), "%", sep="")
# pairs(pca$eigenvect[,1:4], col=as.color(tab.annot.gen$Treatment), labels=lbls, main="Colors = pH Treatment")
# pairs(pca$eigenvect[,1:4], col=as.color(tab.annot.gen$Tank), labels=lbls, main="Colors = Tank")
ibs <- snpgdsIBS(genofile, snp.id=snpset.id, num.thread=2, autosome.only=FALSE)
## Identity-By-State (IBS) analysis on genotypes:
## Excluding 0 SNP (monomorphic: TRUE, MAF: NaN, missing rate: NaN)
## # of samples: 43
## # of SNPs: 1,085
## using 2 threads
## IBS: the sum of all selected genotypes (0,1,2) = 38311
## Mon Apr 04 11:44:55 2022 (internal increment: 65536)
##
[..................................................] 0%, ETC: ---
[==================================================] 100%, completed, 0s
## Mon Apr 04 11:44:55 2022 Done.
pop.idx <- order(tab.annot.gen$Treatment)
#par(xpd=TRUE)
#heatmap(ibs$ibs, col=terrain.colors(16), labCol=TRUE,
# RowSideColors=c("black","red","green","blue")[tab.annot.gen$pop_code])
#legend(0,-.05, legend=levels(tab.annot.gen$pop_code), pch="o", col=1:nlevels(tab.annot.gen$pop_code),
# text.col=1:nlevels(tab.annot.gen$pop_code), cex=.75, ncol=4)
#Perform multidimensional scaling analysis on the matrix of genome-wide IBS pairwise distances:
loc <- cmdscale(1 - ibs$ibs, k = 2)
x <- loc[, 1]; y <- loc[, 2]
plot(x, y, col=group, xlab = "", ylab = "",
main = "Multidimensional Scaling Analysis (IBS)", cex=1.2, pch=16)
#text(x, y+.01, labels=tab.annot.gen$sample.id, cex=0.4, font=2, col=as.integer(group))
legend("topleft", legend=levels(group), pch="o", text.col=1:nlevels(group))
# # Identify crab in each cluster and add to annotation file
# tab.annot.gen <- tab.annot.gen %>% left_join(
# data.frame(x, y, sample=tab.annot.gen$sample.id) %>%
# mutate(ibs.cluster=case_when(x < -0.1 ~ "left",
# x > 0.1 ~"right",
# x < 0.05 & x > -0.1 & y > -0.1 ~ "middle",
# y < -0.1 ~ "bottom")) %>% select(sample, ibs.cluster),
# by=c("sample.id"="sample"))
ibs$ibs %>% hist(breaks=100, main="Histogram of Identity-By-State proportion\nfrom SNPRelate")
# Another look at relatedness estimate
# test <- snpgdsGRM(genofile, snp.id=snpset.id, num.thread=2, autosome.only=FALSE, method="GCTA")
# test$grm %>% hist(breaks=100, main="Histogram of genetic relationship matrix, method=GCTA\nfrom SNPRelate", prob=TRUE)
load(file = "../results/deseq2/vsd.pH") #vsd.pH
pca.princomp.expr <- prcomp(cov(assay(vsd.pH)), scale=F) #scale=F for variance-covariance matrix
pca.eigenval(pca.princomp.expr) #The Proporation of Variance = %variance
## Importance of components:
## PC1 PC2 PC3 PC4 PC5
## Variance(eigenvalue) 0.1971877 0.1007330 0.0130358 0.0075512 0.0032650
## Proportion of Variance 0.5823543 0.2974947 0.0384986 0.0223010 0.0096426
## Cumulative Proportion 0.5823543 0.8798489 0.9183475 0.9406485 0.9502911
## Broken-stick value 4.3267428 3.3267428 2.8267428 2.4934095 2.2434095
## PC6 PC7 PC8 PC9 PC10
## Variance(eigenvalue) 0.0024846 0.0021867 0.0017134 0.0011845 0.0010702
## Proportion of Variance 0.0073378 0.0064580 0.0050602 0.0034983 0.0031606
## Cumulative Proportion 0.9576289 0.9640869 0.9691471 0.9726454 0.9758060
## Broken-stick value 2.0434095 1.8767428 1.7338857 1.6088857 1.4977746
## PC11 PC12 PC13 PC14 PC15
## Variance(eigenvalue) 0.0008187 0.0007814 0.0005743 0.0005095 0.0004795
## Proportion of Variance 0.0024180 0.0023076 0.0016959 0.0015048 0.0014162
## Cumulative Proportion 0.9782240 0.9805316 0.9822275 0.9837323 0.9851484
## Broken-stick value 1.3977746 1.3068655 1.2235321 1.1466091 1.0751805
## PC16 PC17 PC18 PC19 PC20
## Variance(eigenvalue) 0.0004489 0.0003915 0.0003294 0.0003143 0.0002753
## Proportion of Variance 0.0013257 0.0011562 0.0009729 0.0009281 0.0008129
## Cumulative Proportion 0.9864741 0.9876303 0.9886032 0.9895314 0.9903443
## Broken-stick value 1.0085138 0.9460138 0.8871903 0.8316347 0.7790031
## PC21 PC22 PC23 PC24 PC25
## Variance(eigenvalue) 0.0002604 0.0002533 0.0002314 0.0002205 0.0002126
## Proportion of Variance 0.0007689 0.0007480 0.0006833 0.0006512 0.0006279
## Cumulative Proportion 0.9911132 0.9918612 0.9925445 0.9931957 0.9938236
## Broken-stick value 0.7290031 0.6813841 0.6359296 0.5924513 0.5507846
## PC26 PC27 PC28 PC29 PC30
## Variance(eigenvalue) 0.0002043 0.0001962 0.0001621 0.0001531 0.0001517
## Proportion of Variance 0.0006034 0.0005796 0.0004788 0.0004521 0.0004480
## Cumulative Proportion 0.9944270 0.9950066 0.9954855 0.9959375 0.9963855
## Broken-stick value 0.5107846 0.4723231 0.4352861 0.3995718 0.3650890
## PC31 PC32 PC33 PC34 PC35
## Variance(eigenvalue) 0.0001333 0.0001325 0.0001264 0.0001249 0.0001170
## Proportion of Variance 0.0003937 0.0003913 0.0003732 0.0003689 0.0003456
## Cumulative Proportion 0.9967792 0.9971704 0.9975436 0.9979125 0.9982581
## Broken-stick value 0.3317557 0.2994976 0.2682476 0.2379446 0.2085328
## PC36 PC37 PC38 PC39 PC40
## Variance(eigenvalue) 0.0001130 0.0001113 0.0001001 0.0000944 0.0000905
## Proportion of Variance 0.0003337 0.0003288 0.0002956 0.0002787 0.0002672
## Cumulative Proportion 0.9985918 0.9989206 0.9992162 0.9994948 0.9997621
## Broken-stick value 0.1799614 0.1521836 0.1251566 0.0988408 0.0731998
## PC41 PC42
## Variance(eigenvalue) 0.0000806 0.0000000
## Proportion of Variance 0.0002379 0.0000000
## Cumulative Proportion 1.0000000 1.0000000
## Broken-stick value 0.0481998 0.0238095
(pc.percent <- pca.eigenval(pca.princomp.expr)[2,1:4]*100)
## Importance of components:
## PC1 PC2 PC3 PC4
## 58.23543 29.74947 3.84986 2.23010
screeplot(pca.princomp.expr, bstick=TRUE) #looks like PC 1-2 are significant, but also pull the 3rd
tab.expr <- data.frame(sample.id = colnames(assay(vsd.pH)),
PC1.expr = pca.princomp.expr$x[,1], # the first eigenvector
PC2.expr = pca.princomp.expr$x[,2], # the second eigenvector
PC3.expr = pca.princomp.expr$x[,3], # the third eigenvector
PC4.expr = pca.princomp.expr$x[,4], # the fourth eigenvector
stringsAsFactors = FALSE)
shapiro.test(pca.princomp.expr$x) #multivariate normality not met
##
## Shapiro-Wilk normality test
##
## data: pca.princomp.expr$x
## W = 0.44877, p-value < 2.2e-16
tab.expr.annot <- left_join(tab.expr, sample.info, by=c("sample.id"="Sample")) %>% droplevels()
group.expr <- as.factor(tab.expr.annot$Treatment)
ggplot(tab.expr.annot, aes(x=PC1.expr, y=PC2.expr)) +
geom_point(aes(col=Treatment), size=3.5, alpha=0.85) +
theme_minimal() + ggtitle("Expression, all genes, PC1xPC2") +
xlab(paste("PC1 (", round(pc.percent[1], digits = 1), "%)", sep="")) +
ylab(paste("PC2 (", round(pc.percent[2], digits = 1), "%)", sep="")) +
theme(legend.position = "right") +
scale_color_manual(values = c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"), name="pH Treatment") +
guides(colour = guide_legend(override.aes = list(size=3.5))) +
stat_ellipse(aes(color=Treatment), size=0.3)
save(tab.expr.annot, file="../results/genotype/tab.expr.annot")
# # GGSCATTER with ellipses and stars
# ggscatter(tab.expr.annot, x="PC1.expr", y="PC2.expr",
# color="Treatment", size=3.5, alpha=0.85,
# palette = c("#2c7bb6","#fdae61", "#d7191c"),
# ellipse = TRUE, star.plot = TRUE) +
# theme_minimal() + ggtitle("Expression, all genes, PC1xPC2") +
# xlab(paste("PC1 (", round(pc.percent[1], digits = 1), "%)", sep="")) +
# ylab(paste("PC2 (", round(pc.percent[2], digits = 1), "%)", sep="")) +
# theme(legend.position = "right") +
# guides(colour = guide_legend(override.aes = list(size=3.5)))
# load in DEG lists
load(file = "../results/deseq2/diffex.AM")
load(file = "../results/deseq2/diffex.AL")
load(file = "../results/deseq2/diffex.ML")
pca.princomp.expr.pH <-
princomp(cov(assay(vsd.pH[unique(c(rownames(diffex.AM),rownames(diffex.AL),rownames(diffex.ML))),])))
pca.eigenval(pca.princomp.expr.pH) #The Proporation of Variance = %variance
## Importance of components:
## [,1] [,2] [,3] [,4] [,5]
## Variance(eigenvalue) 2.1297512 0.4480297 0.0413377 0.0216129 0.0162686
## Proportion of Variance 0.7925553 0.1667276 0.0153832 0.0080429 0.0060541
## Cumulative Proportion 0.7925553 0.9592829 0.9746661 0.9827090 0.9887631
## Broken-stick value 4.3267428 3.3267428 2.8267428 2.4934095 2.2434095
## [,6] [,7] [,8] [,9] [,10]
## Variance(eigenvalue) 0.0096983 0.0057240 0.0027098 0.0022558 0.0016530
## Proportion of Variance 0.0036091 0.0021301 0.0010084 0.0008395 0.0006151
## Cumulative Proportion 0.9923722 0.9945023 0.9955108 0.9963502 0.9969654
## Broken-stick value 2.0434095 1.8767428 1.7338857 1.6088857 1.4977746
## [,11] [,12] [,13] [,14] [,15]
## Variance(eigenvalue) 0.0010484 0.0010037 0.0007449 0.0007080 0.0005674
## Proportion of Variance 0.0003901 0.0003735 0.0002772 0.0002635 0.0002111
## Cumulative Proportion 0.9973555 0.9977290 0.9980062 0.9982697 0.9984808
## Broken-stick value 1.3977746 1.3068655 1.2235321 1.1466091 1.0751805
## [,16] [,17] [,18] [,19] [,20]
## Variance(eigenvalue) 0.0004085 0.0003656 0.0003441 0.0002999 0.0002710
## Proportion of Variance 0.0001520 0.0001360 0.0001281 0.0001116 0.0001008
## Cumulative Proportion 0.9986328 0.9987689 0.9988969 0.9990085 0.9991093
## Broken-stick value 1.0085138 0.9460138 0.8871903 0.8316347 0.7790031
## [,21] [,22] [,23] [,24] [,25]
## Variance(eigenvalue) 0.0002385 0.0002129 0.0002011 0.0001816 0.0001637
## Proportion of Variance 0.0000888 0.0000792 0.0000748 0.0000676 0.0000609
## Cumulative Proportion 0.9991981 0.9992773 0.9993522 0.9994198 0.9994807
## Broken-stick value 0.7290031 0.6813841 0.6359296 0.5924513 0.5507846
## [,26] [,27] [,28] [,29] [,30]
## Variance(eigenvalue) 0.0001538 0.0001349 0.0001297 0.0001117 0.0001032
## Proportion of Variance 0.0000572 0.0000502 0.0000483 0.0000416 0.0000384
## Cumulative Proportion 0.9995379 0.9995881 0.9996364 0.9996779 0.9997164
## Broken-stick value 0.5107846 0.4723231 0.4352861 0.3995718 0.3650890
## [,31] [,32] [,33] [,34] [,35]
## Variance(eigenvalue) 0.0000964 0.0000924 0.0000866 0.0000798 0.0000707
## Proportion of Variance 0.0000359 0.0000344 0.0000322 0.0000297 0.0000263
## Cumulative Proportion 0.9997522 0.9997866 0.9998189 0.9998486 0.9998749
## Broken-stick value 0.3317557 0.2994976 0.2682476 0.2379446 0.2085328
## [,36] [,37] [,38] [,39] [,40]
## Variance(eigenvalue) 0.0000686 0.0000661 0.0000555 0.0000520 0.0000499
## Proportion of Variance 0.0000255 0.0000246 0.0000206 0.0000193 0.0000186
## Cumulative Proportion 0.9999004 0.9999250 0.9999456 0.9999650 0.9999835
## Broken-stick value 0.1799614 0.1521836 0.1251566 0.0988408 0.0731998
## [,41] [,42]
## Variance(eigenvalue) 0.0000443 0.0000000
## Proportion of Variance 0.0000165 0.0000000
## Cumulative Proportion 1.0000000 1.0000000
## Broken-stick value 0.0481998 0.0238095
(pc.percent.pH <- pca.eigenval(pca.princomp.expr.pH)[2,1:4]*100)
## Importance of components:
## [1] 79.25553 16.67276 1.53832 0.80429
screeplot(pca.princomp.expr.pH, bstick=TRUE) #looks like PC 1 & 2
tab.expr.pH <- data.frame(sample.id = colnames(assay(vsd.pH)),
PC1.degs = pca.princomp.expr.pH$scores[,1], # the first eigenvector
PC2.degs = pca.princomp.expr.pH$scores[,2], # the second eigenvector
PC3.degs = pca.princomp.expr.pH$scores[,3], # the third eigenvector
PC4.degs = pca.princomp.expr.pH$scores[,4], # the third eigenvector
stringsAsFactors = FALSE)
tab.expr.pH.annot <- left_join(tab.expr.pH, sample.info, by=c("sample.id"="Sample")) %>% droplevels()
group.pH.expr <- as.factor(tab.expr.pH.annot$Treatment)
ggplot(tab.expr.pH.annot, aes(x=PC1.degs, y=PC2.degs)) +
geom_point(aes(col=Treatment), size=3.5, alpha=0.85) +
theme_minimal() + ggtitle("Expression PC1xPC2, DEGs in response to pH") +
xlab(paste("PC1 (", round(pc.percent.pH[1], digits = 1), "%)", sep="")) +
ylab(paste("PC2 (", round(pc.percent.pH[2], digits = 1), "%)", sep="")) +
theme(legend.position = "right") +
scale_color_manual(values = c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"), name="pH Treatment") +
guides(colour = guide_legend(override.aes = list(size=3.5))) +
stat_ellipse(aes(color=Treatment), size=0.3)
save(tab.expr.pH.annot, file="../results/genotype/tab.expr.pH.annot")
PCA.merged <- left_join(left_join(
tab.annot.gen %>% select(sample.id, Treatment, Tank, starts_with("PC")),
tab.expr.annot %>% select(starts_with("PC"),sample.id), by=c("sample.id")),
tab.expr.pH.annot %>% select(starts_with("PC"),sample.id), by=c("sample.id"))
chart.Correlation(PCA.merged %>% select(starts_with("PC")), histogram=F, pch=19, method = "pearson")
mtext("PC Axes Correlation, Genetic (.gen) ~ Expression (.all & .degs)", side=3, line=1.25)
Correlated PC axes: - PC2.gen x PC4.degs (positive correlation, highly significant) - PC1.gen x PC3 expr (negativel ycorrelated, modestly significant) - PC2.gen x PC3 expr (negativel ycorrelated, modestly significant)
# PCA.merged.4plots <- PCA.merged %>% dplyr::select(PC1.gen, PC2.gen, PC3.expr, PC4.degs) %>%
# pivot_longer(cols = c(PC3.expr, PC4.degs), values_to = "score", names_to = "PC.expr") %>%
# mutate(PC.expr=as.factor(PC.expr))
# Most significant correlation, PC2.gen x PC4.degs
ggscatter(PCA.merged, x="PC2.gen", y="PC4.degs", add="reg.line", conf.int = TRUE,
color="white",
add.params = list(color = "gray50", fill = "gray70")) +
ggtitle("Genetic PC2 ~ Expression (DEGs only) PC4 Axes") +
xlab("Genetic PC2") + ylab("DEGs PC4") +
stat_cor(method = "pearson", show.legend=FALSE) +
theme_pubclean() +theme(legend.position = "bottom") +
scale_color_manual(values=c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"), name="pH Treatment") +
guides(colour = guide_legend(override.aes = list(size=3.5))) +
geom_point(aes(col=Treatment), alpha=0.85, size=1.8)
## `geom_smooth()` using formula 'y ~ x'
## Warning: Removed 1 rows containing non-finite values (stat_smooth).
## Warning: Removed 1 rows containing non-finite values (stat_cor).
## Warning: Removed 1 rows containing missing values (geom_point).
## Removed 1 rows containing missing values (geom_point).
# Modestly sign. correlation
ggscatter(PCA.merged, x="PC1.gen", y="PC3.expr", add="reg.line", conf.int = TRUE,
color="white",
add.params = list(color = "gray50", fill = "gray70")) +
ggtitle("Genetic PC1 ~ Expression (all genes) PC3 Axes") +
xlab("Genetic PC1") + ylab("DEGs PC4") +
stat_cor(method = "pearson", show.legend=FALSE) +
theme_pubclean() +theme(legend.position = "bottom") +
scale_color_manual(values=c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"), name="pH Treatment") +
guides(colour = guide_legend(override.aes = list(size=3.5))) +
geom_point(aes(col=Treatment), alpha=0.85, size=1.8)
## `geom_smooth()` using formula 'y ~ x'
## Warning: Removed 1 rows containing non-finite values (stat_smooth).
## Warning: Removed 1 rows containing non-finite values (stat_cor).
## Warning: Removed 1 rows containing missing values (geom_point).
## Removed 1 rows containing missing values (geom_point).
# Modestly sign. correlation
ggscatter(PCA.merged, x="PC2.gen", y="PC3.expr", add="reg.line", conf.int = TRUE,
color="white",
add.params = list(color = "gray50", fill = "gray70")) +
ggtitle("Genetic PC2 ~ Expression (all genes) PC3 Axes") +
xlab("Genetic PC2") + ylab("DEGs PC4") +
stat_cor(method = "pearson", show.legend=FALSE) +
theme_pubclean() +theme(legend.position = "bottom") +
scale_color_manual(values=c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"), name="pH Treatment") +
guides(colour = guide_legend(override.aes = list(size=3.5))) +
geom_point(aes(col=Treatment), alpha=0.85, size=1.8)
## `geom_smooth()` using formula 'y ~ x'
## Warning: Removed 1 rows containing non-finite values (stat_smooth).
## Warning: Removed 1 rows containing non-finite values (stat_cor).
## Warning: Removed 1 rows containing missing values (geom_point).
## Removed 1 rows containing missing values (geom_point).
# Run linear models
# Normal?
hist(PCA.merged$PC1.gen)
hist(PCA.merged$PC2.gen)
hist(PCA.merged$PC4.degs)
hist(PCA.merged$PC3.expr)
shapiro.test(PCA.merged$PC1.gen)
##
## Shapiro-Wilk normality test
##
## data: PCA.merged$PC1.gen
## W = 0.88872, p-value = 0.0005791
shapiro.test(PCA.merged$PC2.gen)
##
## Shapiro-Wilk normality test
##
## data: PCA.merged$PC2.gen
## W = 0.91315, p-value = 0.003214
shapiro.test(PCA.merged$PC4.degs)
##
## Shapiro-Wilk normality test
##
## data: PCA.merged$PC4.degs
## W = 0.95674, p-value = 0.1128
shapiro.test(PCA.merged$PC3.expr)
##
## Shapiro-Wilk normality test
##
## data: PCA.merged$PC3.expr
## W = 0.95361, p-value = 0.08705
# Examine linear relationship between Expression PC axes and genetic PC axes, also testing for effect of & interaction with Treatment
anova(lm(PC4.degs ~ PC2.gen*Treatment, data=PCA.merged))
## Analysis of Variance Table
##
## Response: PC4.degs
## Df Sum Sq Mean Sq F value Pr(>F)
## PC2.gen 1 0.25541 0.255406 14.6206 0.0005026 ***
## Treatment 2 0.01736 0.008681 0.4969 0.6125067
## PC2.gen:Treatment 2 0.00609 0.003045 0.1743 0.8407241
## Residuals 36 0.62888 0.017469
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
anova(lm(PC3.expr ~ PC1.gen*Treatment, data=PCA.merged))
## Analysis of Variance Table
##
## Response: PC3.expr
## Df Sum Sq Mean Sq F value Pr(>F)
## PC1.gen 1 0.06804 0.068040 5.9359 0.01991 *
## Treatment 2 0.01594 0.007972 0.6955 0.50540
## PC1.gen:Treatment 2 0.03783 0.018916 1.6502 0.20620
## Residuals 36 0.41265 0.011463
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
anova(lm(PC3.expr ~ PC2.gen*Treatment, data=PCA.merged))
## Analysis of Variance Table
##
## Response: PC3.expr
## Df Sum Sq Mean Sq F value Pr(>F)
## PC2.gen 1 0.05354 0.053535 4.323 0.04478 *
## Treatment 2 0.01773 0.008867 0.716 0.49553
## PC2.gen:Treatment 2 0.01739 0.008694 0.702 0.50224
## Residuals 36 0.44581 0.012384
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
Step 1: generate pairwise genetic distances between samples based on SNPs Step 2: generate pairwise distance matrices from expression data using: - All expressed genes - pH-DEGs Step 3: Calculate Pearson & Spearman correlations between genetic and expression distances
# Genetic distance matrices
snp.dists <- ibs$ibs %>% `colnames<-` (ibs$sample.id) %>% `rownames<-` (ibs$sample.id)
# Expression distance matrices, ALL expression data
sampleDistss <- dist(t(assay(vsd.pH)))
# Expression distance matrix, pH DEGs
sampleDistss.pH <- dist(t(assay(vsd.pH[rownames(vsd.pH) %in%
unique(c(rownames(diffex.AM),rownames(diffex.AL),rownames(diffex.ML))),])))
# Create list of samples that are found in both the genetic and expression distance matrices
dist.sampless <- c(as.matrix(sampleDistss) %>% rownames())[c(as.matrix(sampleDistss) %>% rownames()) %in% rownames(snp.dists)]
# Subset each distance matrix to only include samples found in both
snp.dists.filt <- dist_subset(d=snp.dists, idx=dist.sampless) # genetic distance matrix, common samples
sampleDistss.filt <- dist_subset(d=sampleDistss, idx=dist.sampless) # expression distance matrix, common samples
sampleDistss.pH.filt <- dist_subset(d=sampleDistss.pH, idx=dist.sampless) # DEG distance matrix, common samples
# Check to see if matrices are in same order
all(snp.dists.filt %>% as.matrix() %>% rownames() == sampleDistss.filt %>% as.matrix() %>% rownames()) # yes!
## [1] TRUE
# Perform correlation
plot(x=snp.dists.filt, y=sampleDistss.filt, main="Correlation between pairwise distances\nSNP-based ~ Expr-based")
plot(x=snp.dists.filt, y=sampleDistss.pH.filt, main="Correlation between pairwise distances\nSNP-based ~ DEG-based")
# Perform mantel test
mantel(snp.dists.filt, sampleDistss.filt, permutations=9999 ) #distance matrices are not sign. correlated
##
## Mantel statistic based on Pearson's product-moment correlation
##
## Call:
## mantel(xdis = snp.dists.filt, ydis = sampleDistss.filt, permutations = 9999)
##
## Mantel statistic r: -0.1408
## Significance: 0.9998
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.0469 0.0590 0.0689 0.0793
## Permutation: free
## Number of permutations: 9999
mantel(snp.dists.filt, sampleDistss.pH.filt, permutations=9999 ) #distance matrices are not sign. correlated
##
## Mantel statistic based on Pearson's product-moment correlation
##
## Call:
## mantel(xdis = snp.dists.filt, ydis = sampleDistss.pH.filt, permutations = 9999)
##
## Mantel statistic r: -0.08754
## Significance: 0.9854
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.0465 0.0572 0.0675 0.0780
## Permutation: free
## Number of permutations: 9999
distancess <- cbind(
melt(as.matrix(sampleDistss.filt), varnames = c("row", "col"), value.name = "expr.all"),
melt(as.matrix(sampleDistss.pH.filt), varnames = c("row", "col"), value.name = "expr.pH")["expr.pH"],
melt(as.matrix(snp.dists.filt), varnames = c("row", "col"), value.name = "snp")["snp"])
# remove 0 distances and join with factors (population, pCO2 treatment)
distancess <- distancess %>%
dplyr::filter(snp!=0) %>%
left_join((sample.info %>%
dplyr::select(Sample, Treatment)), by=c("row"="Sample")) %>%
mutate(Treatment=as.factor(Treatment))
# Inspect expression distance matrices vs. snp distance matrix for possible correlations?
chart.Correlation(distancess[3:5] %>% filter(expr.all!=0),histogram=F, pch=19) #snp vs. expr & deg correlation are both weak but significant
cor.test(distancess$snp, distancess$expr.all, method = "pearson") #cor -0.15
##
## Pearson's product-moment correlation
##
## data: distancess$snp and distancess$expr.all
## t = -5.8983, df = 1720, p-value = 4.412e-09
## alternative hypothesis: true correlation is not equal to 0
## 95 percent confidence interval:
## -0.18679912 -0.09419309
## sample estimates:
## cor
## -0.1408041
cor.test(distancess$snp, distancess$expr.pH, method = "pearson") #cor -0.08
##
## Pearson's product-moment correlation
##
## data: distancess$snp and distancess$expr.pH
## t = -3.6446, df = 1720, p-value = 0.0002758
## alternative hypothesis: true correlation is not equal to 0
## 95 percent confidence interval:
## -0.13422357 -0.04047099
## sample estimates:
## cor
## -0.08754112
ggscatter(distancess, x = "snp", y = "expr.all", size=1,
add = "reg.line", # Add regressin line
add.params = list(color = "black", fill = "gray50"), # Customize reg. line
conf.int = TRUE # Add confidence interval
) + stat_cor(method = "pearson", size=5, colour="red") +
xlab("Genetic Distance") + ylab("Expression Distance") +
ggtitle("Sample-sample distances, SNPs ~ All genes") +
theme(legend.position = "right") +
guides(colour = guide_legend(override.aes = list(size=3.5)))
## `geom_smooth()` using formula 'y ~ x'
ggscatter(distancess, x = "snp", y = "expr.pH", size=1,
add = "reg.line", # Add regressin line
add.params = list(color = "black", fill = "gray50"), # Customize reg. line
conf.int = TRUE # Add confidence interval
) + stat_cor(method = "pearson", size=5, colour="red") +
xlab("Genetic Distance") + ylab("Expression Distance") +
ggtitle("Sample-sample distances, SNPs ~ DEGs only") +
theme(legend.position = "right") +
guides(colour = guide_legend(override.aes = list(size=3.5)))
## `geom_smooth()` using formula 'y ~ x'
I did this on Sedna using the slurm script [filter-vcf.sh])(../scripts/filter-vcf.sh), which executed the following code:
vcftools --gzvcf \
"/scratch/lspencer/2022-redking-OA/genotypes/rkc_rnaseq_genotypes-filtered-true.vcf.gz" \
--max-missing 0.80 --maf 0.05 --recode --recode-INFO-all --out \
"/scratch/lspencer/2022-redking-OA/genotypes/rkc_rnaseq_genotypes-final"
This created the file rkc_rnaseq_genotypes-final.recode.vcf
I used this tutorial as an example. - call vcftools - feed it a vcf file after the –vcf flag - Set –max-missing 0.90 to keep only loci with 10% missing genotypes across all individuals - The –recode flag tells the program to write a new vcf file with the filters - The –recode-INFO-all keeps all the INFO flags from the old vcf file in the new one. - Lastly, –out designates the name of the output
# Load the data
vcf <- read.vcfR("../results/genotype/rkc_rnaseq_genotypes-final_miss20.recode.vcf", verbose = FALSE )
# It results in 1,429 SNPs, which does not match SNPRelate's number (1,355). Why?
# Quantify missing data for each sample
myMiss <- apply(extract.gt(vcf), MARGIN = 2, function(x){ sum(is.na(x)) })
myMiss <- myMiss/nrow(vcf)
par(mar = c(12,4,4,2))
barplot(myMiss, las = 2, cex.names = .5)
title(ylab = "Sample Missingness (%)")
extract.gt(vcf)
## Tank_10_Crab_1 Tank_10_Crab_2 Tank_10_Crab_3
## HiC_scaffold_1_2523394 "1/1" NA "0/0"
## HiC_scaffold_1_2542157 NA NA "0/0"
## HiC_scaffold_1_2647806 "1/1" NA NA
## HiC_scaffold_1_2970226 "0/1" "0/0" "0/0"
## HiC_scaffold_1_3329447 "0|1" NA "0/0"
## HiC_scaffold_1_3795100 "0/0" NA "1|1"
## HiC_scaffold_10_2221345 "1/1" NA "0/0"
## HiC_scaffold_10_2299490 "1|1" "0/0" "0/0"
## HiC_scaffold_10_2565301 "0/0" NA "1/1"
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## HiC_scaffold_10_4319900 "1|1" "0/0" "0/0"
## HiC_scaffold_10_4319907 "1|1" "0/0" "0/0"
## HiC_scaffold_10_5404579 "0/0" NA NA
## HiC_scaffold_10_5843373 "0/0" NA "0/0"
## HiC_scaffold_100_854947 "0/0" "0/0" "1|1"
## HiC_scaffold_100_1070817 "0/1" NA "1/1"
## HiC_scaffold_100_2002094 "0/0" "1|1" "1|1"
## HiC_scaffold_100_2002097 "0/0" "1|1" "1|1"
## HiC_scaffold_100_2010331 "0/0" "0/0" "1|1"
## HiC_scaffold_100_5186498 "1/1" NA "1/1"
## HiC_scaffold_100_5828477 "1/1" NA "0/0"
## HiC_scaffold_100_6470419 "0/0" "0/0" "0/0"
## HiC_scaffold_100_6739225 "0/1" "1/1" "0/1"
## HiC_scaffold_100_6739258 "0/0" "1|1" "0/0"
## HiC_scaffold_100_6739264 NA "1|1" "0/0"
## HiC_scaffold_100_6907177 "0/0" NA "1/1"
## HiC_scaffold_100_8384481 "1/1" NA "1|1"
## HiC_scaffold_100_8384495 "0/0" NA "1|1"
## HiC_scaffold_100_9451470 "0/0" NA "0/1"
## HiC_scaffold_100_10464574 "0/1" NA "0/0"
## HiC_scaffold_100_11934792 "0|1" "0/0" "1|1"
## HiC_scaffold_100_11980177 "1/1" NA "1/1"
## HiC_scaffold_100_18465760 "0/0" "0/0" "1|1"
## HiC_scaffold_100_18465762 "0/0" "0/0" "1|1"
## HiC_scaffold_100_18466205 NA "0/0" "1|1"
## HiC_scaffold_100_31738115 "0/0" NA "1/1"
## HiC_scaffold_100_44227362 "0/0" "1/1" NA
## HiC_scaffold_101_12808961 NA NA "0/0"
## HiC_scaffold_101_13897149 NA "1/1" "1/1"
## HiC_scaffold_101_18337279 "0/0" NA "0/0"
## HiC_scaffold_101_20800167 "1/1" NA "0/0"
## HiC_scaffold_102_2260041 "0/0" NA NA
## HiC_scaffold_102_8734519 "0/1" NA NA
## HiC_scaffold_102_10233999 "0/0" "1|1" "1|1"
## HiC_scaffold_102_11446042 "1/1" "0/1" "0/0"
## HiC_scaffold_102_15918694 "1/1" "0/0" "0/0"
## HiC_scaffold_102_15935667 "1|1" NA "1/1"
## HiC_scaffold_102_17442643 "0/0" "1/1" "1|1"
## HiC_scaffold_102_17608969 "0/0" "0/0" "0/1"
## HiC_scaffold_102_20180185 "0/0" "0/0" "1/1"
## HiC_scaffold_102_24788723 "1/1" "0/0" "0/1"
## HiC_scaffold_102_25423729 "1|1" NA "1|1"
## HiC_scaffold_102_39755142 "0/0" "1/1" "0/1"
## HiC_scaffold_102_52046978 "0/0" NA "0/0"
## HiC_scaffold_1027_34152 "0|1" "0/0" "1/1"
## HiC_scaffold_103_601715 "1/1" "1/1" "0/1"
## HiC_scaffold_103_2891384 "0/1" NA "0/0"
## HiC_scaffold_103_8191270 "0|1" "0/0" "0/0"
## HiC_scaffold_103_9521272 "1/1" NA "1|1"
## HiC_scaffold_103_14768909 "1|1" NA "0|1"
## HiC_scaffold_103_19312119 "1|1" NA "1/1"
## HiC_scaffold_103_21284866 "0/0" "0/0" "0/1"
## HiC_scaffold_103_31428453 "1|1" "1|1" "1|1"
## HiC_scaffold_103_42567396 "0/0" NA "0/1"
## HiC_scaffold_103_45921571 "0|1" NA NA
## HiC_scaffold_103_45921573 "0|1" "0/0" NA
## HiC_scaffold_103_49592022 "0/0" "0/1" "1|1"
## HiC_scaffold_103_49620132 "0|1" "0/0" NA
## HiC_scaffold_103_50440915 "0/0" "1|1" NA
## HiC_scaffold_103_51944137 "1/1" "1/1" "1/1"
## HiC_scaffold_103_54308582 "1|1" NA "0/0"
## HiC_scaffold_103_54424067 "0/0" NA NA
## HiC_scaffold_103_56932900 "1/1" "1/1" "0/1"
## HiC_scaffold_103_57470264 "1|1" NA "1|1"
## HiC_scaffold_104_7771140 "1/1" "1/1" "0/0"
## HiC_scaffold_104_9103028 "0/0" NA "1/1"
## HiC_scaffold_104_10633168 "0/0" "0/0" "0/0"
## HiC_scaffold_104_18917031 "1/1" "1/1" "1/1"
## HiC_scaffold_104_20851902 "0/0" NA "0/0"
## HiC_scaffold_104_24451803 "0/0" "0/0" "0/0"
## HiC_scaffold_104_28597688 "0/1" "1/1" "0|1"
## HiC_scaffold_104_40927999 "1/1" "0/0" "1/1"
## HiC_scaffold_104_46490074 NA NA "0/1"
## HiC_scaffold_104_49759053 "0/0" "0/0" "0/0"
## HiC_scaffold_104_57267896 NA NA "1/1"
## HiC_scaffold_104_62570010 "0/0" NA "1/1"
## HiC_scaffold_11_32804173 NA "0/0" "1/1"
## HiC_scaffold_11_34516508 "1/1" "1/1" "1/1"
## HiC_scaffold_11_35332996 NA "1/1" "1/1"
## HiC_scaffold_11_35904027 NA NA "1/1"
## HiC_scaffold_11_41539793 "0/0" "1/1" "1/1"
## HiC_scaffold_11_41604080 "1|1" "1/1" "1|1"
## HiC_scaffold_11_42855323 "0/0" NA "1/1"
## HiC_scaffold_11_45339409 "0/0" "0/1" "0/1"
## HiC_scaffold_11_45339410 "0|1" "0/1" "0/1"
## HiC_scaffold_11_47544035 "1/1" NA "0/1"
## HiC_scaffold_12_7515164 "1/1" "0/1" "0/0"
## HiC_scaffold_12_12640100 "0/0" NA "0/1"
## HiC_scaffold_12_12826705 "0/0" "0/0" "0/0"
## HiC_scaffold_12_14899285 "0/0" "0/0" NA
## HiC_scaffold_12_17465672 "0|1" "0/0" "0|1"
## HiC_scaffold_12_22770710 "1|1" NA "0/1"
## HiC_scaffold_12_32318964 NA "0/0" "1|1"
## HiC_scaffold_12_35136373 "1|1" NA "0/0"
## HiC_scaffold_12_40687860 "0/0" NA "0/0"
## HiC_scaffold_13_2938168 "1/1" "0/0" "1/1"
## HiC_scaffold_13_20350974 "0/0" "1/1" "1/1"
## HiC_scaffold_13_27759554 "0/0" NA "0/0"
## HiC_scaffold_13_28146828 NA "0/0" NA
## HiC_scaffold_13_28146830 "0/0" "0/0" NA
## HiC_scaffold_13_28925343 "1/1" "0/0" "1/1"
## HiC_scaffold_13_31913129 "0/0" "0/0" "0/0"
## HiC_scaffold_13_32078924 "0/0" NA "0/0"
## HiC_scaffold_13_33864805 "1/1" NA NA
## HiC_scaffold_13_34892542 "1/1" "0/0" "0/1"
## HiC_scaffold_13_34893103 "0/0" NA "0/0"
## HiC_scaffold_13_35762551 "0|1" NA "0/0"
## HiC_scaffold_13_35881745 "1/1" "1/1" "0/1"
## HiC_scaffold_13_35881749 "0/0" "0/0" "0/0"
## HiC_scaffold_14_3843214 "0/0" NA "0/1"
## HiC_scaffold_14_25884262 "0/0" "0/0" "0/0"
## HiC_scaffold_14_27050415 "1/1" NA "1/1"
## HiC_scaffold_14_27118495 "1/1" "1/1" "1/1"
## HiC_scaffold_14_27277222 "0/0" "0/0" "0/0"
## HiC_scaffold_14_29215814 "1|1" "0/0" "1|1"
## HiC_scaffold_15_2460398 "1|1" "1/1" "0|1"
## HiC_scaffold_15_2462980 "0/0" "0/0" "0/1"
## HiC_scaffold_15_2467289 NA NA "1/1"
## HiC_scaffold_15_5669141 "0/1" NA NA
## HiC_scaffold_15_13700694 "0/0" "0/0" "0/0"
## HiC_scaffold_15_17825275 "0/0" NA "0/0"
## HiC_scaffold_15_19938475 NA "0/0" "0/1"
## HiC_scaffold_15_23865956 "1|1" NA "1|1"
## HiC_scaffold_15_28837774 "0/1" "0/1" "0/1"
## HiC_scaffold_15_28837810 "0/1" NA "0/1"
## HiC_scaffold_15_28837823 "0/1" NA "0/0"
## HiC_scaffold_15_28837835 "0/0" NA "0/0"
## HiC_scaffold_15_28837841 "0/1" NA "0|1"
## HiC_scaffold_15_28837854 "1/1" NA "1/1"
## HiC_scaffold_15_34827832 "0/0" "1/1" "0/0"
## HiC_scaffold_15_34893807 "0/0" "0/1" "0/0"
## HiC_scaffold_15_35327348 NA NA "0/1"
## HiC_scaffold_15_42161112 "0/0" "0/0" "0/0"
## HiC_scaffold_15_42164926 "0/0" NA "1|1"
## HiC_scaffold_15_42164946 "0/0" NA "1/1"
## HiC_scaffold_15_46289572 "1/1" NA "1/1"
## HiC_scaffold_15_50591576 "1|1" "1|1" NA
## HiC_scaffold_15_50759128 "0/0" NA "1/1"
## HiC_scaffold_15_51188336 "1|1" NA "1|1"
## HiC_scaffold_15_54726640 NA NA "1/1"
## HiC_scaffold_15_54788235 "0/1" NA "0/0"
## HiC_scaffold_15_56162375 "0/0" NA "0/1"
## HiC_scaffold_15_61091106 "1/1" NA "0/0"
## HiC_scaffold_15_61464359 "1/1" "1/1" "1/1"
## HiC_scaffold_15_61510386 "1/1" "1/1" "0/1"
## HiC_scaffold_15_62309788 "0|1" "0/0" "0/0"
## HiC_scaffold_15_62309793 "0|1" "0/0" "0/0"
## HiC_scaffold_15_62771254 "0/0" "0/0" "0/0"
## HiC_scaffold_15_63493927 "1/1" "1/1" NA
## HiC_scaffold_15_64997502 "0/0" "0/1" "0/1"
## HiC_scaffold_15_65007865 "1|1" "0|1" NA
## HiC_scaffold_15_65007879 "0|1" "0|1" NA
## HiC_scaffold_15_66038529 "0/0" "0/0" "1/1"
## HiC_scaffold_15_69811281 "1/1" "1/1" "1/1"
## HiC_scaffold_16_14205925 "0/1" "1/1" "0/0"
## HiC_scaffold_16_30404047 "0/0" "0/0" NA
## HiC_scaffold_16_57413288 "1|1" "1/1" "0/0"
## HiC_scaffold_16_63687578 NA NA "0/0"
## HiC_scaffold_16_74138787 "0/1" NA "0/0"
## HiC_scaffold_16_74140106 "0/1" NA "0/0"
## HiC_scaffold_16_76276015 "0/1" "1/1" "0/0"
## HiC_scaffold_17_11390873 NA "0/0" "1|1"
## HiC_scaffold_17_12551128 "0/1" "1/1" "1/1"
## HiC_scaffold_17_16615612 NA "0/0" "0/0"
## HiC_scaffold_17_18838093 "1|1" "0/0" "1|1"
## HiC_scaffold_17_22801072 "0/1" "0/0" NA
## HiC_scaffold_17_23788599 "1/1" "0/1" "0/0"
## HiC_scaffold_17_29383895 "0/0" "1/1" "0/0"
## HiC_scaffold_17_29618771 "0/0" "1/1" "0/1"
## HiC_scaffold_17_29976139 "1/1" "0/0" "1/1"
## HiC_scaffold_17_31107213 "1/1" NA "1|1"
## HiC_scaffold_17_32493792 NA NA "0/0"
## HiC_scaffold_17_33732050 "1|1" "0/0" "0/1"
## HiC_scaffold_17_33801314 "1|1" "0|1" "0/1"
## HiC_scaffold_17_34081889 "1/1" "1/1" "0/1"
## HiC_scaffold_18_227565 "1|1" "1/1" NA
## HiC_scaffold_18_1213486 "1/1" NA "0/1"
## HiC_scaffold_18_1701312 "0/0" "1/1" NA
## HiC_scaffold_18_3506437 "1/1" NA "1/1"
## HiC_scaffold_18_6304978 "1/1" NA "1/1"
## HiC_scaffold_18_6351493 "1/1" NA "1/1"
## HiC_scaffold_18_6358009 "0/0" "0/0" "0/1"
## HiC_scaffold_18_10770701 "0/0" "0/0" "0/0"
## HiC_scaffold_18_13342858 NA NA "1/1"
## HiC_scaffold_18_20045832 "0/0" "0/0" "0/0"
## HiC_scaffold_18_22682683 "0/0" "1/1" "0/0"
## HiC_scaffold_18_26337790 NA "1|1" "0/0"
## HiC_scaffold_18_48929148 "0/0" "0/0" "1|1"
## HiC_scaffold_18_51490626 "0/1" "0/0" NA
## HiC_scaffold_18_53723137 "1|1" NA "0/0"
## HiC_scaffold_18_54496637 "0/0" "1|1" "1|1"
## HiC_scaffold_18_55294388 "0/0" "1/1" "1/1"
## HiC_scaffold_19_279726 "0/0" "1/1" NA
## HiC_scaffold_19_6426572 "0/0" NA "1/1"
## HiC_scaffold_19_6575887 "0/0" NA "0/0"
## HiC_scaffold_19_7755254 "0/0" "1/1" "1|1"
## HiC_scaffold_19_9301421 "0/0" "0|1" "0/0"
## HiC_scaffold_19_9357388 "1|1" "0/0" "1|1"
## HiC_scaffold_19_9778841 "1/1" NA "1/1"
## HiC_scaffold_19_10928976 "1|1" NA "0/0"
## HiC_scaffold_19_10928980 "1|1" NA "0/0"
## HiC_scaffold_19_10928982 "0/0" NA "1|1"
## HiC_scaffold_19_11106347 "0/0" "0/0" NA
## HiC_scaffold_19_11590139 "0/0" "0/0" "0/0"
## HiC_scaffold_19_11665300 "1/1" NA "0/1"
## HiC_scaffold_19_14793640 "0/0" NA "1/1"
## HiC_scaffold_19_22112743 "0/0" NA "0/0"
## HiC_scaffold_19_25473671 "0/0" NA "1/1"
## HiC_scaffold_19_25473692 "0/0" "0/0" "1/1"
## HiC_scaffold_19_28110829 "0/0" NA NA
## HiC_scaffold_19_28465002 "0/1" "0/0" "1|1"
## HiC_scaffold_19_28465167 "0|1" NA "0|1"
## HiC_scaffold_19_30106869 "1|1" "0/0" "0/0"
## HiC_scaffold_19_52538858 NA "1/1" "1/1"
## HiC_scaffold_19_52596196 "0/0" "0/0" "1|1"
## HiC_scaffold_19_53482993 "1/1" NA "1/1"
## HiC_scaffold_19_54312637 "1/1" "1/1" "1|1"
## HiC_scaffold_19_59345841 "1|1" "1|1" NA
## HiC_scaffold_2_3296144 NA "1|1" "1|1"
## HiC_scaffold_2_3418589 NA NA "0/0"
## HiC_scaffold_2_3864060 "0/0" "0/0" "1/1"
## HiC_scaffold_2_4104755 "0/0" "1|1" NA
## HiC_scaffold_2_4104758 "0/0" "1|1" NA
## HiC_scaffold_2_8316721 "0/0" NA "1/1"
## HiC_scaffold_2_9098999 "0/0" NA "1/1"
## HiC_scaffold_2_10457537 "1/1" NA "1/1"
## HiC_scaffold_2_19048125 "1|1" "1|1" "1/1"
## HiC_scaffold_2_21748201 "1/1" "1/1" "1/1"
## HiC_scaffold_2_33187764 "1|1" NA "0/0"
## HiC_scaffold_2_33187770 "1|1" NA "0/0"
## HiC_scaffold_2_33187959 "0/1" "0/0" "0/1"
## HiC_scaffold_2_41603929 "0/1" "1/1" "0/0"
## HiC_scaffold_2_52233191 "1/1" "0/0" "0/0"
## HiC_scaffold_2_52400748 "0/0" NA "1/1"
## HiC_scaffold_2_52403793 "0/0" NA "0/0"
## HiC_scaffold_2_52799130 "1/1" "1/1" "1/1"
## HiC_scaffold_20_10332897 "0/0" NA NA
## HiC_scaffold_20_17198418 "1|1" NA "1|1"
## HiC_scaffold_20_17915398 NA "1|1" "0|1"
## HiC_scaffold_20_18872955 "0/0" "1/1" "0/0"
## HiC_scaffold_20_19055301 "1/1" NA "1/1"
## HiC_scaffold_20_19150094 NA "1/1" "1/1"
## HiC_scaffold_20_20651022 "0/1" "0/0" "1|1"
## HiC_scaffold_20_22651296 NA "0/0" "0/0"
## HiC_scaffold_21_2009156 "0/1" NA "0/1"
## HiC_scaffold_21_2435648 "0/0" NA NA
## HiC_scaffold_21_7164210 "0|1" NA "0/0"
## HiC_scaffold_21_9786512 "1/1" NA "0/1"
## HiC_scaffold_21_12424922 NA "1/1" "1/1"
## HiC_scaffold_21_17966833 "0/0" NA "1/1"
## HiC_scaffold_21_19025429 "1/1" NA NA
## HiC_scaffold_21_20058318 NA NA "0|1"
## HiC_scaffold_21_20562855 "0/0" "0/0" "0/0"
## HiC_scaffold_21_20661860 NA "0/0" "0/0"
## HiC_scaffold_21_20895395 "0/0" "0/0" "0/0"
## HiC_scaffold_21_21158811 "1|1" "2|2" NA
## HiC_scaffold_21_22250857 "1/1" "1|1" "0/1"
## HiC_scaffold_21_22250866 "0/0" "1|1" "0|1"
## HiC_scaffold_21_22257737 "1/1" NA "1/1"
## HiC_scaffold_21_22644667 "1|1" "1/1" "1|1"
## HiC_scaffold_21_22644673 "1|1" "1/1" "1|1"
## HiC_scaffold_21_22666888 "1/1" NA "0/1"
## HiC_scaffold_21_23905416 "0/0" "0/0" "1|1"
## HiC_scaffold_21_23981651 "0/0" "0/0" NA
## HiC_scaffold_21_24287068 NA "1/1" "0/0"
## HiC_scaffold_21_30798434 "1|1" NA "1|1"
## HiC_scaffold_21_35006232 "1/1" "1/1" NA
## HiC_scaffold_21_35779294 "0/0" NA "0/0"
## HiC_scaffold_22_124910 "1/1" "1/1" NA
## HiC_scaffold_22_751023 "1/1" "1/1" "1/1"
## HiC_scaffold_22_1042644 "0|1" NA "0|1"
## HiC_scaffold_22_1044708 "1/1" NA "0/0"
## HiC_scaffold_22_2174911 NA "0/0" "0/0"
## HiC_scaffold_22_3431122 "0/0" "0/0" "1|1"
## HiC_scaffold_22_3446787 "1|1" "1|1" "1|1"
## HiC_scaffold_22_3451756 "0|1" "0/0" "1|1"
## HiC_scaffold_22_3720435 "0/0" "0/1" NA
## HiC_scaffold_22_4065466 "0/0" "0/0" "0/0"
## HiC_scaffold_22_4739889 "0/0" "0/0" "0/0"
## HiC_scaffold_22_4918263 "1|1" NA "0|1"
## HiC_scaffold_22_5750008 "1/1" NA "1/1"
## HiC_scaffold_22_5769942 "0/0" NA "0/0"
## HiC_scaffold_22_28264522 "1|1" NA "0/0"
## HiC_scaffold_22_28265115 "0|1" "0/0" "0/1"
## HiC_scaffold_22_29205851 "0/0" NA "1/1"
## HiC_scaffold_22_29822340 "1/1" "0/1" NA
## HiC_scaffold_22_30797357 "1/1" NA "0/0"
## HiC_scaffold_22_32042610 "1|1" NA "1|1"
## HiC_scaffold_23_11215327 "0/0" NA "1/1"
## HiC_scaffold_23_27081333 "1/1" "1/1" "1/1"
## HiC_scaffold_23_28672255 "0/0" NA "0/0"
## HiC_scaffold_23_29218828 "0/1" "0/0" "1/1"
## HiC_scaffold_23_32528768 "0/0" "0/0" "0/1"
## HiC_scaffold_23_32669383 "0/0" "0/0" "0/1"
## HiC_scaffold_23_33199663 "0/1" NA "0/0"
## HiC_scaffold_23_33245843 "1/1" "1|1" NA
## HiC_scaffold_23_40824545 "1|1" NA "1|1"
## HiC_scaffold_23_41504669 "0/0" "0/0" "1/1"
## HiC_scaffold_24_16622654 NA "1/1" "1/1"
## HiC_scaffold_24_16622681 NA "1|1" "1/1"
## HiC_scaffold_24_19851560 "0|1" NA "1/1"
## HiC_scaffold_24_20590563 "0/0" "1/1" "0/0"
## HiC_scaffold_24_27745754 "0/1" NA "0/1"
## HiC_scaffold_24_28763699 "1|1" "1|1" "1|1"
## HiC_scaffold_24_28763703 "1|1" "1|1" "1|1"
## HiC_scaffold_25_4135969 "1/1" "0/0" "0/0"
## HiC_scaffold_25_4201677 "1/1" NA "0/1"
## HiC_scaffold_25_5872831 "0/0" "0/0" "0/1"
## HiC_scaffold_25_6879627 "0/1" NA "0/0"
## HiC_scaffold_25_8172813 "0/1" NA "0/0"
## HiC_scaffold_25_9969507 "0/1" NA "1|1"
## HiC_scaffold_25_10691336 NA "0/0" "0/0"
## HiC_scaffold_25_21286462 "1/1" NA "0/0"
## HiC_scaffold_26_4086662 "0/0" NA NA
## HiC_scaffold_26_7539671 "1|1" NA "1|1"
## HiC_scaffold_26_8348511 "1/1" "1/1" "0/0"
## HiC_scaffold_26_9043748 "1|1" NA "0/0"
## HiC_scaffold_26_9045655 "1|1" "0/0" "0/0"
## HiC_scaffold_26_11253181 "1/1" "1|1" "0/1"
## HiC_scaffold_26_17828344 "1/1" NA "1/1"
## HiC_scaffold_26_17932520 "1/1" "1/1" "1/1"
## HiC_scaffold_26_17941459 "0/0" "1|1" "0/0"
## HiC_scaffold_26_17960877 NA "1/1" "1/1"
## HiC_scaffold_26_18284041 "0/0" "0/0" "0/1"
## HiC_scaffold_26_18288701 "1|1" "1|1" "1|1"
## HiC_scaffold_26_18294422 "1/1" "0/1" "0/1"
## HiC_scaffold_26_21307365 "1/1" "0/0" "1/1"
## HiC_scaffold_26_22159924 NA NA "1/1"
## HiC_scaffold_26_22161535 "1/1" "1/1" "1/1"
## HiC_scaffold_26_24794176 "0/0" "1/1" NA
## HiC_scaffold_26_28538113 "0|1" NA "0|1"
## HiC_scaffold_26_29031357 "1/1" "1/1" "1/1"
## HiC_scaffold_26_29163462 "1/1" "0/0" "0/0"
## HiC_scaffold_26_42631018 "0/1" "0/0" "0/0"
## HiC_scaffold_26_42634814 "1/1" NA "1/1"
## HiC_scaffold_26_43483190 NA "0/0" "1/1"
## HiC_scaffold_26_49955889 "1/1" "1/1" "1/1"
## HiC_scaffold_26_58342510 NA "1/1" "0/0"
## HiC_scaffold_27_1496120 NA "1|1" "1|1"
## HiC_scaffold_27_1947057 "1|1" "1|1" "0/1"
## HiC_scaffold_27_2359058 "1|1" "1|1" "1/1"
## HiC_scaffold_27_2699645 "0/0" "0/0" "0/0"
## HiC_scaffold_27_4425475 "0|1" "0/0" "1|1"
## HiC_scaffold_27_7539469 "0/1" "0/0" "0|1"
## HiC_scaffold_27_7777122 "0/1" "0/0" "0/0"
## HiC_scaffold_27_16657070 "1/1" "0/0" "0/0"
## HiC_scaffold_27_24539255 "0|1" "0/0" "0|1"
## HiC_scaffold_27_34642359 "0/0" NA "1|1"
## HiC_scaffold_27_34647277 "0/0" "0/0" "0/0"
## HiC_scaffold_27_35380535 "1/1" NA "1/1"
## HiC_scaffold_27_35383230 "0/0" "0/0" "0/1"
## HiC_scaffold_28_21261390 "0/0" NA "0/0"
## HiC_scaffold_28_24490442 "1/1" NA "0/0"
## HiC_scaffold_28_25601927 "0/1" "0/1" "0/1"
## HiC_scaffold_28_31793968 "1/1" NA "0/1"
## HiC_scaffold_28_32126687 "0/0" "0/0" "1|1"
## HiC_scaffold_28_34779518 NA "1/1" "1/1"
## HiC_scaffold_28_36042491 "0/0" NA "0/0"
## HiC_scaffold_28_36692361 "0/1" "0/0" "0/0"
## HiC_scaffold_28_38672993 "0/1" "0/0" "0/1"
## HiC_scaffold_28_39640526 NA NA "0/0"
## HiC_scaffold_28_40169242 "0/0" NA "0/0"
## HiC_scaffold_28_41059640 "1|1" "1|1" "1|1"
## HiC_scaffold_28_42514830 "0|1" NA "1/1"
## HiC_scaffold_28_42601570 "0/0" NA NA
## HiC_scaffold_28_42601585 "1/1" "0/0" NA
## HiC_scaffold_28_43018803 "0/1" "0/1" NA
## HiC_scaffold_28_43036165 "0/1" "0/0" "1/1"
## HiC_scaffold_29_344317 "0/0" NA "1/1"
## HiC_scaffold_29_3811176 "0/0" NA "0/1"
## HiC_scaffold_29_6073993 "1|1" NA "0/0"
## HiC_scaffold_29_6415222 "1/1" "1/1" "0/0"
## HiC_scaffold_29_8224424 "1/1" "0/0" "0/1"
## HiC_scaffold_29_11153624 "1/1" "1/1" NA
## HiC_scaffold_29_11153712 NA "1/1" NA
## HiC_scaffold_29_11167966 "1/1" "0|1" "1/1"
## HiC_scaffold_29_11491468 "0/0" "0/0" "0/0"
## HiC_scaffold_29_12103558 "1/1" NA "1|1"
## HiC_scaffold_29_14279322 NA "0/0" "0/1"
## HiC_scaffold_29_14913907 NA "1/1" "1|1"
## HiC_scaffold_29_16378276 "1/1" NA "1/1"
## HiC_scaffold_29_20635937 "1/1" "0/0" "0/1"
## HiC_scaffold_29_20636787 "0/0" "1/1" "0/1"
## HiC_scaffold_29_22560215 NA NA "1/1"
## HiC_scaffold_29_22561144 "1/1" "1/1" "0/1"
## HiC_scaffold_29_24017849 "0/0" "0/0" "1/1"
## HiC_scaffold_29_31603590 "0/0" NA "0/0"
## HiC_scaffold_3_21670751 NA "0/0" "1/1"
## HiC_scaffold_3_24747014 "0/0" NA "0/1"
## HiC_scaffold_3_27861792 "0/1" "0/0" "0/1"
## HiC_scaffold_3_28057869 "1/1" "0/0" "0/0"
## HiC_scaffold_3_28441436 "0/0" NA "1/1"
## HiC_scaffold_3_28694380 "0/0" NA "0/1"
## HiC_scaffold_3_31361023 "0/1" "1/1" "0/1"
## HiC_scaffold_3_31960572 NA "0/0" "1|1"
## HiC_scaffold_3_32157169 "0/1" NA "1/1"
## HiC_scaffold_3_32159152 "1/1" NA "0/0"
## HiC_scaffold_3_34124237 "0/0" NA "0/0"
## HiC_scaffold_30_14199802 "0/1" NA "1/1"
## HiC_scaffold_30_16052331 NA "0/1" "1/1"
## HiC_scaffold_30_19914075 "1/1" "1/1" "1/1"
## HiC_scaffold_30_20688783 "0/0" NA "1/1"
## HiC_scaffold_30_21446076 "0|1" NA "0/0"
## HiC_scaffold_30_21598563 "0/1" "0/0" "0/0"
## HiC_scaffold_30_22155728 "1|1" NA "0|1"
## HiC_scaffold_31_687411 "1/1" NA "1/1"
## HiC_scaffold_31_3224722 NA NA "0/0"
## HiC_scaffold_31_3574854 "0/0" "1/1" "0/1"
## HiC_scaffold_31_5899551 "1|1" "1|1" "1/1"
## HiC_scaffold_31_5911491 "0/0" NA "0/1"
## HiC_scaffold_31_6297680 "1/1" NA NA
## HiC_scaffold_31_12394016 "0/0" NA "1/1"
## HiC_scaffold_31_12394040 "0/0" "0/0" "0/0"
## HiC_scaffold_31_18612650 "0/0" NA NA
## HiC_scaffold_32_4446859 "1/1" "1/1" "0/1"
## HiC_scaffold_32_5274796 "0/0" "0/0" NA
## HiC_scaffold_32_5275108 "1/1" NA "0/0"
## HiC_scaffold_32_5282358 "0/0" NA NA
## HiC_scaffold_32_5450203 "0/1" NA "0/0"
## HiC_scaffold_32_44200178 "1/1" NA "0/0"
## HiC_scaffold_33_638523 NA NA "0/1"
## HiC_scaffold_33_44489563 "1/1" NA "0/1"
## HiC_scaffold_33_44489988 "0/1" "0/0" "0/1"
## HiC_scaffold_33_47080180 "1/1" "1/1" "0/0"
## HiC_scaffold_33_47495907 "0/0" NA "1|1"
## HiC_scaffold_33_51865876 "0/0" "0/0" "0/0"
## HiC_scaffold_34_1096982 "0/0" "0/0" "0/0"
## HiC_scaffold_34_6091943 "0/0" "1/1" "1|1"
## HiC_scaffold_34_6100160 "0/0" "0/0" "1|1"
## HiC_scaffold_34_24368584 "0/0" "1/1" "0/0"
## HiC_scaffold_35_3233120 "0/0" NA "0/1"
## HiC_scaffold_35_3253574 "0/0" NA "0|1"
## HiC_scaffold_35_5512296 "0/0" NA "0/1"
## HiC_scaffold_35_15114788 "0/1" "1/1" NA
## HiC_scaffold_35_21214090 "0/1" "0/0" "1/1"
## HiC_scaffold_35_21462564 "1/1" "0/0" "0/0"
## HiC_scaffold_35_22746783 "0/1" NA NA
## HiC_scaffold_35_22747085 "0/0" "0/0" "1|1"
## HiC_scaffold_35_23059580 "0/0" NA "1/1"
## HiC_scaffold_35_23158882 "0/0" "0/0" "1/1"
## HiC_scaffold_35_23261143 "1/1" NA "1/1"
## HiC_scaffold_35_24403602 "0/1" NA "1/1"
## HiC_scaffold_35_24403620 "1/1" NA "1/1"
## HiC_scaffold_35_24993986 "0/1" "1/1" "1/1"
## HiC_scaffold_35_24993998 "0/1" "1|1" "1/1"
## HiC_scaffold_36_1538038 "0/1" NA "1/1"
## HiC_scaffold_36_2464728 "0|1" "1/1" "1|1"
## HiC_scaffold_36_5489050 "0/0" NA "1/1"
## HiC_scaffold_36_9673981 "0/0" "0/0" "0/1"
## HiC_scaffold_36_9674127 "1/1" NA "1/1"
## HiC_scaffold_36_9674756 "1/1" NA "1/1"
## HiC_scaffold_36_9676329 "1/1" "1/1" NA
## HiC_scaffold_36_12304516 "0/0" NA "0/0"
## HiC_scaffold_36_12515555 "0|1" "0/0" "1|1"
## HiC_scaffold_36_13092647 "0/1" NA "0/0"
## HiC_scaffold_36_13766994 "0/0" NA "1/1"
## HiC_scaffold_36_14567741 "1/1" NA "0/1"
## HiC_scaffold_36_15530578 "1|1" "1|1" "1|1"
## HiC_scaffold_37_679894 "1/1" "1/1" "1/1"
## HiC_scaffold_37_916693 "0/0" "0/0" "1|1"
## HiC_scaffold_37_928146 "1/1" "1/1" NA
## HiC_scaffold_37_1256768 "1|1" "1|1" "0/0"
## HiC_scaffold_37_1270034 NA "0/0" NA
## HiC_scaffold_37_1770997 NA "0/0" "0/0"
## HiC_scaffold_37_1798298 NA NA "0/0"
## HiC_scaffold_37_2010342 NA NA "1|1"
## HiC_scaffold_37_2141526 "0/0" "0/1" "0/0"
## HiC_scaffold_37_3952190 "1|1" NA "0|1"
## HiC_scaffold_37_3952215 "1|1" NA "0|1"
## HiC_scaffold_37_9915037 "0/1" "0/0" "0/0"
## HiC_scaffold_38_5383430 "0/1" "1/1" "0/0"
## HiC_scaffold_38_5668363 "0/0" "0/0" "0/0"
## HiC_scaffold_38_5879849 "0/0" "0/0" "0/0"
## HiC_scaffold_38_5880155 "1/1" "1/1" "1/1"
## HiC_scaffold_38_10612790 "1|1" "0/0" "0/0"
## HiC_scaffold_38_11940240 "0/1" "1/1" "1|1"
## HiC_scaffold_38_12878826 "0/0" "0/0" "1/1"
## HiC_scaffold_38_12959698 "0/0" NA "0/1"
## HiC_scaffold_38_13087368 "1/1" "1/1" "1/1"
## HiC_scaffold_38_13480648 NA "0/0" "0/0"
## HiC_scaffold_38_13965243 "0/1" "1/1" "1/1"
## HiC_scaffold_38_14089955 "1/1" "0/0" "0/1"
## HiC_scaffold_38_14408072 "0/0" NA "0/0"
## HiC_scaffold_38_14931216 "1|1" "1/1" "1/1"
## HiC_scaffold_38_14978356 "0/0" "0/0" "0/0"
## HiC_scaffold_38_14978367 "0/0" "0/0" "0/0"
## HiC_scaffold_38_15292863 "0/0" NA "0/0"
## HiC_scaffold_38_15306135 NA NA "1|1"
## HiC_scaffold_38_16077506 "0/0" "1|1" "1|1"
## HiC_scaffold_38_16138965 "1/1" NA "0/1"
## HiC_scaffold_38_16226040 "1/1" NA "0/0"
## HiC_scaffold_39_1393769 "0/0" NA "0/0"
## HiC_scaffold_39_2014970 "0/0" NA NA
## HiC_scaffold_39_2014982 "0/0" NA NA
## HiC_scaffold_39_2014985 "0/0" NA NA
## HiC_scaffold_39_2426443 "0/0" "0/0" "0/0"
## HiC_scaffold_39_2485330 "1/1" "0/0" "1/1"
## HiC_scaffold_39_3350506 "0/0" "0/0" "0/0"
## HiC_scaffold_39_5897388 NA "1|1" "0/0"
## HiC_scaffold_39_17631133 "0/0" NA "0/1"
## HiC_scaffold_4_12107187 "0/0" "0/0" "0/1"
## HiC_scaffold_4_18241670 "1|1" NA "1|1"
## HiC_scaffold_4_18241723 "1|1" NA "1|1"
## HiC_scaffold_4_22418566 "0/0" NA "0/0"
## HiC_scaffold_4_27899990 "0/0" "0/0" "0/0"
## HiC_scaffold_4_35575118 NA "0/0" "0/0"
## HiC_scaffold_4_38000967 "1/1" "1/1" "1/1"
## HiC_scaffold_4_50654021 "1|1" "0/0" "1|1"
## HiC_scaffold_40_2243415 "0/0" "1/1" "0/0"
## HiC_scaffold_40_3000572 "0/1" NA "0/0"
## HiC_scaffold_40_3014177 "1|1" NA "1|1"
## HiC_scaffold_40_3027900 "0/1" "0/0" "1/1"
## HiC_scaffold_40_3143834 "0/0" "0/0" "0/0"
## HiC_scaffold_40_3843942 "1/1" "0/0" "0/0"
## HiC_scaffold_40_3847620 "0/0" NA "0/1"
## HiC_scaffold_40_3891007 "1/1" NA "0/0"
## HiC_scaffold_40_3920667 "1|1" NA NA
## HiC_scaffold_40_4177963 "0/0" "0/0" "0/0"
## HiC_scaffold_40_4819107 "1/1" NA "0/0"
## HiC_scaffold_40_4819834 "0/0" NA "1|1"
## HiC_scaffold_40_5788271 "0/0" NA "1|1"
## HiC_scaffold_40_5965269 NA NA NA
## HiC_scaffold_40_6204154 "1/1" "0/1" "0/0"
## HiC_scaffold_40_8387917 "0/1" "1/1" "1/1"
## HiC_scaffold_41_3235384 "0/0" "0/0" NA
## HiC_scaffold_41_3583000 "1/1" NA NA
## HiC_scaffold_41_5334504 "1/1" NA "1|1"
## HiC_scaffold_41_5387631 "0/0" "0/0" NA
## HiC_scaffold_41_6423426 "1/1" NA "1/1"
## HiC_scaffold_41_14359947 "0/1" "0/0" "0/1"
## HiC_scaffold_41_24007593 "0/0" "0/0" "0/0"
## HiC_scaffold_41_26225447 "0/0" NA "0/0"
## HiC_scaffold_41_28626484 NA NA "1/1"
## HiC_scaffold_41_28660620 "0|1" NA "0/0"
## HiC_scaffold_41_31007688 "0/0" "0/0" "0/0"
## HiC_scaffold_42_1131084 "0/0" NA "0/0"
## HiC_scaffold_42_1818523 "0/0" "1/1" "0/1"
## HiC_scaffold_42_2165002 "1/1" "0/0" NA
## HiC_scaffold_42_2711332 "0/1" NA "0/1"
## HiC_scaffold_42_6142699 "0/0" NA "1/1"
## HiC_scaffold_42_6744976 "0/1" "1/1" NA
## HiC_scaffold_42_8066919 "1|1" "0/0" "0|1"
## HiC_scaffold_42_8068292 "0/0" "0/1" "0/0"
## HiC_scaffold_42_12487888 "1|1" "1|1" "1|1"
## HiC_scaffold_42_41366687 "1/1" "1/1" "1/1"
## HiC_scaffold_42_47313337 "0/0" "0/0" "0/0"
## HiC_scaffold_42_47313338 "0/0" "0/0" "0/0"
## HiC_scaffold_42_50784971 "1|1" "0/0" "0|1"
## HiC_scaffold_42_50784977 "1|1" "0/0" "0|1"
## HiC_scaffold_42_50784981 "0/0" "1/1" "0/1"
## HiC_scaffold_42_51916989 NA NA "1/1"
## HiC_scaffold_43_3842003 NA "1/1" "1/1"
## HiC_scaffold_43_14140861 "0/0" NA "1|1"
## HiC_scaffold_43_15053605 "1/1" "0/0" "1/1"
## HiC_scaffold_43_17289945 "1|1" NA NA
## HiC_scaffold_43_29967704 "0/0" "0/0" "1/1"
## HiC_scaffold_43_35745831 NA "0/0" "1|1"
## HiC_scaffold_43_37627949 "1|1" NA "1|1"
## HiC_scaffold_43_37628126 NA NA "0/0"
## HiC_scaffold_43_44017118 "0/1" "1/1" "1/1"
## HiC_scaffold_43_55124138 "0/0" "1|1" "0/0"
## HiC_scaffold_43_60107326 "1|1" "0|1" "0|1"
## HiC_scaffold_43_61359386 "0/0" NA "1/1"
## HiC_scaffold_43_61702593 "0/0" NA "0/0"
## HiC_scaffold_43_61702606 "0/0" NA "0/0"
## HiC_scaffold_43_61702721 "0/0" NA "0/0"
## HiC_scaffold_43_61702738 "1|1" "0/0" "0/0"
## HiC_scaffold_43_62511703 "0/1" "0/0" "0/1"
## HiC_scaffold_43_64069457 "0/0" "0/0" "1/1"
## HiC_scaffold_43_64577269 "1/1" "1/1" "1/1"
## HiC_scaffold_44_1920144 "0/0" NA NA
## HiC_scaffold_44_2148035 NA NA "0/0"
## HiC_scaffold_44_2568167 "0/1" NA "1/1"
## HiC_scaffold_45_4180070 "1/1" "1/1" "0/1"
## HiC_scaffold_45_4797754 "1/2" "0/0" "2/2"
## HiC_scaffold_45_5911123 "1|1" "1|1" "0/1"
## HiC_scaffold_45_6958990 NA NA "0/0"
## HiC_scaffold_45_8516216 "1/1" NA "1/1"
## HiC_scaffold_45_10191213 NA "1/1" "0/0"
## HiC_scaffold_45_12005885 "1/1" NA "0/0"
## HiC_scaffold_45_12006766 NA "0/0" "1/1"
## HiC_scaffold_45_24736172 NA "0/0" "0/1"
## HiC_scaffold_45_24739830 "0/0" "1|1" "1|1"
## HiC_scaffold_46_9691567 "0/0" "0/0" "0/0"
## HiC_scaffold_46_17380257 "1/1" NA "0/0"
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## HiC_scaffold_46_37092355 NA NA "0/0"
## HiC_scaffold_46_39183624 "1/1" "1/1" "1/1"
## HiC_scaffold_46_39390547 "1/1" "0/0" "0/0"
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## HiC_scaffold_46_42986653 "0/0" NA "0/1"
## HiC_scaffold_46_52074364 "0/1" "1|1" "1|1"
## HiC_scaffold_46_54255667 "1|1" "1/1" "1/1"
## HiC_scaffold_47_3750532 "1/1" "1/1" NA
## HiC_scaffold_47_3751345 "0/0" "0/0" "0/0"
## HiC_scaffold_47_15400639 "1|1" NA "1|1"
## HiC_scaffold_47_24072414 "0/1" "0/0" NA
## HiC_scaffold_47_25273825 "0/1" NA "0/0"
## HiC_scaffold_48_8752752 "0/1" "0|2" "0/0"
## HiC_scaffold_48_10765920 NA NA "0/0"
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## HiC_scaffold_48_16077940 "0|1" NA "0/1"
## HiC_scaffold_48_16411609 NA NA NA
## HiC_scaffold_48_19972580 "0/1" "1/1" NA
## HiC_scaffold_48_23493079 "1|1" "0/0" "1|1"
## HiC_scaffold_48_23597210 "0/1" "0/0" "0/0"
## HiC_scaffold_48_24478493 "0/0" "0/0" "0/1"
## HiC_scaffold_48_24881148 "0/1" "0/0" "1/1"
## HiC_scaffold_48_25865723 "1/1" "1/1" "1/1"
## HiC_scaffold_48_25984068 "0/0" "1|1" "0/1"
## HiC_scaffold_48_25989079 "0|1" NA "0/0"
## HiC_scaffold_48_30601375 NA "1|1" "0|1"
## HiC_scaffold_48_31662115 NA NA "1/1"
## HiC_scaffold_48_41971562 NA NA "0/1"
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## HiC_scaffold_49_6101692 "1/1" NA "1/1"
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## HiC_scaffold_49_9470474 NA "0/0" "1/1"
## HiC_scaffold_49_9886007 "0/0" "1/1" "1/1"
## HiC_scaffold_49_12592113 "0/0" NA NA
## HiC_scaffold_49_12741575 "0/0" NA "0/1"
## HiC_scaffold_49_15135019 NA "1|1" "1/1"
## HiC_scaffold_49_25906219 "0/0" "0/0" "0/0"
## HiC_scaffold_49_26614199 NA NA NA
## HiC_scaffold_49_26655554 "0|1" "0/0" NA
## HiC_scaffold_49_37568341 "1/1" NA NA
## HiC_scaffold_49_37568353 "1/1" NA NA
## HiC_scaffold_49_40002255 "0/0" "0/0" "1|1"
## HiC_scaffold_49_40003229 "0/0" NA "0/0"
## HiC_scaffold_49_42966376 "0/0" NA "1/1"
## HiC_scaffold_5_801252 "0/0" NA "1/1"
## HiC_scaffold_5_1446603 NA NA NA
## HiC_scaffold_5_1446611 NA NA NA
## HiC_scaffold_5_1530759 "0/1" NA "1/1"
## HiC_scaffold_5_1539275 "0/0" "0/0" "0/0"
## HiC_scaffold_5_1789576 "0/0" NA "1|1"
## HiC_scaffold_5_1808197 "1/1" NA "1/1"
## HiC_scaffold_5_1808204 "0/0" NA "0/0"
## HiC_scaffold_5_1943895 "1|1" "1|1" "0/1"
## HiC_scaffold_5_1944469 "1/1" "0/1" "1/1"
## HiC_scaffold_5_2857283 "0/0" NA "1/1"
## HiC_scaffold_5_4061378 NA "1/1" NA
## HiC_scaffold_5_4340647 "0/0" NA "0/0"
## HiC_scaffold_5_4435246 "1/1" "0/0" "1/1"
## HiC_scaffold_5_8868783 "0/1" NA "1/1"
## HiC_scaffold_50_4315969 "0/0" NA "0/1"
## HiC_scaffold_50_11652296 NA "1|1" "1/1"
## HiC_scaffold_50_11657309 "1/1" NA "1/1"
## HiC_scaffold_50_15521027 "0/1" "0/0" "0/0"
## HiC_scaffold_50_21050962 "1/1" "0/0" "0/0"
## HiC_scaffold_50_23686202 "1|1" "0/0" "1|1"
## HiC_scaffold_50_27393462 "0|1" "0/0" "0|1"
## HiC_scaffold_50_42586883 "0/0" "1/1" "0/0"
## HiC_scaffold_50_45087211 "0/0" "1/1" "1/1"
## HiC_scaffold_50_49796550 "1/1" "0/0" "1/1"
## HiC_scaffold_50_54383367 "0/0" "0/0" "0|1"
## HiC_scaffold_50_63318678 "0/1" NA "1/1"
## HiC_scaffold_51_3521000 "1/1" "0/0" "0/0"
## HiC_scaffold_51_4681905 "1/1" "0/0" "0/0"
## HiC_scaffold_51_6305599 "0/0" "0/0" "0/0"
## HiC_scaffold_51_8530818 "1|1" "0/0" "0/0"
## HiC_scaffold_51_11653312 NA NA "1/1"
## HiC_scaffold_51_13138547 "1/1" NA "1/1"
## HiC_scaffold_51_14457091 "1|1" "1|1" "0|1"
## HiC_scaffold_51_15512668 "0/1" "1/1" "0/1"
## HiC_scaffold_51_17816346 "1/1" NA "1/1"
## HiC_scaffold_51_19997934 "1|1" NA "1|1"
## HiC_scaffold_51_19997936 "1|1" NA "1|1"
## HiC_scaffold_51_20870773 "1/1" NA "0/0"
## HiC_scaffold_51_26660104 "0/0" "0/0" "0/0"
## HiC_scaffold_51_40727521 "0|1" "1|1" "1|1"
## HiC_scaffold_51_40892841 NA "0/0" "0/1"
## HiC_scaffold_51_41717519 NA "0/0" "1/1"
## HiC_scaffold_51_42547638 "0/1" "1/1" NA
## HiC_scaffold_52_3335804 "1/1" NA "0/0"
## HiC_scaffold_52_4149130 "0/0" NA "0|1"
## HiC_scaffold_52_6893679 "1|1" "1|1" "1|1"
## HiC_scaffold_52_13155416 "1|1" "1/1" "1/1"
## HiC_scaffold_52_13155437 "1|1" "1|1" "1|1"
## HiC_scaffold_52_13155442 "1|1" "1|1" "1|1"
## HiC_scaffold_52_14885688 "1/1" NA "0/0"
## HiC_scaffold_52_14895078 NA "1/1" "1/1"
## HiC_scaffold_52_15141791 "1/1" NA "0/0"
## HiC_scaffold_52_15743051 NA "0/0" "1|1"
## HiC_scaffold_52_15760201 "0/0" "0/0" "0/1"
## HiC_scaffold_52_15834589 "1/1" NA "0/1"
## HiC_scaffold_52_15841769 "1/1" NA "0/0"
## HiC_scaffold_52_15862421 "0/1" "0/0" "1|1"
## HiC_scaffold_52_15970970 "0/1" NA "1/2"
## HiC_scaffold_52_16275237 "0/0" "1/1" "1/1"
## HiC_scaffold_52_16275240 "1|1" "0/0" "0/0"
## HiC_scaffold_52_16275290 NA "0/0" "0/0"
## HiC_scaffold_52_16524164 "0/0" "1|1" "0/1"
## HiC_scaffold_52_16524572 "1/1" "1/1" "0/0"
## HiC_scaffold_52_16525647 "0/1" "0/0" "0/0"
## HiC_scaffold_52_16637047 NA NA "1/1"
## HiC_scaffold_52_17202127 "1|1" "0/0" "0/0"
## HiC_scaffold_52_17207724 "1/1" NA "0/0"
## HiC_scaffold_52_17508820 NA "0/0" "1|1"
## HiC_scaffold_52_17547593 "1/1" "1/1" "0/0"
## HiC_scaffold_52_17551239 NA "0/1" "1/1"
## HiC_scaffold_52_17560696 "0|1" NA "0/0"
## HiC_scaffold_52_17560699 "0|1" NA "0/0"
## HiC_scaffold_52_17741250 "0/0" NA "0/1"
## HiC_scaffold_52_17742260 "1/1" NA "0/0"
## HiC_scaffold_52_18340578 "0/0" NA "1/1"
## HiC_scaffold_52_18415911 "1/1" NA "0/1"
## HiC_scaffold_52_22189517 "1/1" NA "0/1"
## HiC_scaffold_52_22526592 "0/1" "0/0" NA
## HiC_scaffold_52_26393471 "0/1" NA "1/1"
## HiC_scaffold_52_26799380 "0/0" "1/1" "1/1"
## HiC_scaffold_52_31871931 "0/1" "0/0" "1/1"
## HiC_scaffold_52_31874283 "1/1" NA NA
## HiC_scaffold_52_31874287 "0/0" "0/0" "0/0"
## HiC_scaffold_52_32161053 "0|1" "1|1" "1|1"
## HiC_scaffold_52_33165557 "0/0" NA "1/1"
## HiC_scaffold_52_33897620 NA NA "0/0"
## HiC_scaffold_52_34763156 "0/0" NA "0/1"
## HiC_scaffold_52_34763171 "0/1" "0/0" "1/1"
## HiC_scaffold_52_35174755 "1|1" NA "0/0"
## HiC_scaffold_52_35608453 "0/0" "0/0" "0/1"
## HiC_scaffold_52_35608470 "0/0" "0/0" "1|1"
## HiC_scaffold_52_39464728 "0/0" NA "0/0"
## HiC_scaffold_52_42141354 NA "1|1" "0/0"
## HiC_scaffold_52_44675725 "1/1" NA "1/1"
## HiC_scaffold_52_49935920 "0/0" "1/1" "0/1"
## HiC_scaffold_53_21789524 "0/0" "0/0" "1/1"
## HiC_scaffold_53_25168042 NA "0/0" "0/0"
## HiC_scaffold_53_26398989 NA NA "0/0"
## HiC_scaffold_53_26398992 NA NA "0/0"
## HiC_scaffold_53_26398994 NA NA "0/0"
## HiC_scaffold_53_26549665 "0/0" "1|1" "0/0"
## HiC_scaffold_53_29227676 "0|1" NA "0|1"
## HiC_scaffold_53_31250349 "1|1" "1/1" "0/1"
## HiC_scaffold_54_530581 "1|1" "1|1" "0/1"
## HiC_scaffold_54_794095 "0/1" NA "1|1"
## HiC_scaffold_54_1171109 "0/0" NA "1|1"
## HiC_scaffold_54_1378956 "0/0" "0/0" "1/1"
## HiC_scaffold_54_1380539 "1/1" NA "1/1"
## HiC_scaffold_54_3045015 "1/1" "0/0" "1/1"
## HiC_scaffold_54_3185987 "1/1" NA "0/0"
## HiC_scaffold_54_4401098 "0/0" NA "1|1"
## HiC_scaffold_54_5595903 NA "0/0" NA
## HiC_scaffold_54_5595921 NA NA NA
## HiC_scaffold_54_5595928 "0/0" NA NA
## HiC_scaffold_54_5595949 NA "0/0" NA
## HiC_scaffold_54_6649662 "1/1" "1/1" "1/1"
## HiC_scaffold_54_8036734 "0/1" "0/0" "0/0"
## HiC_scaffold_54_9206614 "1/1" NA "1/1"
## HiC_scaffold_54_35913192 "0/1" NA "1|1"
## HiC_scaffold_54_35913282 "1|1" "0/0" "0/0"
## HiC_scaffold_54_35913283 "1|1" "0/0" "0/0"
## HiC_scaffold_55_1260491 "1/1" "1/1" "1/1"
## HiC_scaffold_55_3254027 "0/0" "0/0" "1/1"
## HiC_scaffold_55_3281985 "0/0" NA NA
## HiC_scaffold_55_5409544 "0/1" NA "0/0"
## HiC_scaffold_55_5411094 "1|1" NA "1|1"
## HiC_scaffold_55_5411115 "1/1" NA "1|1"
## HiC_scaffold_55_18121799 "1/1" "0/0" "1/1"
## HiC_scaffold_55_19605809 "1|1" NA NA
## HiC_scaffold_55_19605817 "1|1" NA "0/1"
## HiC_scaffold_55_19605821 "1|1" NA "1/1"
## HiC_scaffold_55_20195204 "0/0" "1/1" "0/0"
## HiC_scaffold_55_20886967 "1/1" NA "0/0"
## HiC_scaffold_55_23222937 "0/0" "1/1" "1/1"
## HiC_scaffold_55_23626331 NA NA "0/0"
## HiC_scaffold_55_24539590 "0/0" "1/1" "0/1"
## HiC_scaffold_55_24585939 "0/0" "0/0" "0/0"
## HiC_scaffold_55_34174151 "1/1" "1/1" "0/0"
## HiC_scaffold_56_17874332 NA "0/0" "0/0"
## HiC_scaffold_56_18635259 "1|1" NA "0/0"
## HiC_scaffold_56_23654344 NA "1/1" "0/0"
## HiC_scaffold_56_35850533 "0/1" "0/0" "0/0"
## HiC_scaffold_56_35850539 "0/1" "0/0" "1|1"
## HiC_scaffold_56_40813556 NA NA "1/1"
## HiC_scaffold_56_53211633 "0/0" "0/0" "0/1"
## HiC_scaffold_56_60070829 "1/1" "1/1" "1/1"
## HiC_scaffold_56_73286017 "1|1" "1|1" "0/1"
## HiC_scaffold_56_73829442 "0|1" NA "0/2"
## HiC_scaffold_56_73829443 "0|1" NA "0/2"
## HiC_scaffold_56_76060304 NA NA NA
## HiC_scaffold_57_25306408 "1/1" "1/1" "1/1"
## HiC_scaffold_57_29222385 NA "0/0" "0/0"
## HiC_scaffold_57_29592432 "1/1" NA "0/0"
## HiC_scaffold_57_31472698 "0/0" "1/1" "0/0"
## HiC_scaffold_57_32371742 "0/0" NA "0/0"
## HiC_scaffold_57_36495072 "0/0" "1/1" "0/1"
## HiC_scaffold_57_37286264 NA "1/1" "1/1"
## HiC_scaffold_57_38537415 "1|1" NA "0/0"
## HiC_scaffold_57_45438854 "0/0" NA "0/0"
## HiC_scaffold_57_52856874 NA "0/0" "0/1"
## HiC_scaffold_57_53575355 "0/1" NA "1/1"
## HiC_scaffold_57_55856783 "1/1" NA "1/1"
## HiC_scaffold_58_1362614 "0/1" "1/1" "1/1"
## HiC_scaffold_58_1432845 "1/1" "1/1" "0/1"
## HiC_scaffold_58_1541720 "0/0" NA "0/1"
## HiC_scaffold_58_2777120 "1/1" NA "0/1"
## HiC_scaffold_58_2973169 "1/1" "1|1" "1/1"
## HiC_scaffold_58_3243043 "0/0" NA "0/1"
## HiC_scaffold_58_4035282 "0/0" NA NA
## HiC_scaffold_58_5442157 NA NA "0/1"
## HiC_scaffold_58_8004631 "1/1" "0/0" "0/0"
## HiC_scaffold_58_8058998 NA "1|1" NA
## HiC_scaffold_58_8932837 "1/1" "1|1" "0/0"
## HiC_scaffold_58_14814944 NA "0/0" "0/1"
## HiC_scaffold_58_15639988 "0/1" "0/0" "0/0"
## HiC_scaffold_58_15707198 "0/1" NA "1/1"
## HiC_scaffold_58_15707258 "1/1" NA "1/1"
## HiC_scaffold_58_15710623 "0/0" NA NA
## HiC_scaffold_58_19155063 "0/1" "0/0" "0/0"
## HiC_scaffold_58_20224050 "0/0" NA "1/1"
## HiC_scaffold_58_38475355 "1/1" NA "1/1"
## HiC_scaffold_59_3979055 NA NA "1/1"
## HiC_scaffold_59_5071810 "0/0" "0/0" "1|1"
## HiC_scaffold_59_5349936 "0/0" NA "1/1"
## HiC_scaffold_59_5350114 NA "0/0" "0/0"
## HiC_scaffold_59_7738302 "1/1" NA "0/0"
## HiC_scaffold_59_7738351 NA "0/0" "0/0"
## HiC_scaffold_59_7958561 "1|1" NA "1|1"
## HiC_scaffold_59_9273798 NA "0/0" "0/0"
## HiC_scaffold_59_50928099 "0/1" NA "0/1"
## HiC_scaffold_59_52960060 "0/0" "0/0" "0/0"
## HiC_scaffold_6_10569023 "1/1" NA "0/0"
## HiC_scaffold_6_10711445 "1/1" NA NA
## HiC_scaffold_6_13209200 "0/0" NA "0/1"
## HiC_scaffold_6_13213107 "0/0" NA "0/1"
## HiC_scaffold_6_13311684 "1|1" NA NA
## HiC_scaffold_6_15670783 "1|1" NA NA
## HiC_scaffold_6_19111232 "0/0" NA NA
## HiC_scaffold_6_32805498 NA "0/0" NA
## HiC_scaffold_6_38793174 "0/0" "1|1" "0/0"
## HiC_scaffold_6_41092101 "1|1" "0/0" "0/0"
## HiC_scaffold_6_41342933 "1/1" "1/1" "0/0"
## HiC_scaffold_6_47594508 "1/1" "0/0" "0/0"
## HiC_scaffold_60_70878 "1|1" "1|1" "1|1"
## HiC_scaffold_60_99549 "0/0" "0/0" "1|1"
## HiC_scaffold_60_201823 "0/0" "0/0" "1/1"
## HiC_scaffold_60_712969 "1/1" "0/0" "1|1"
## HiC_scaffold_60_744783 "1|1" NA "0/1"
## HiC_scaffold_60_744788 "0/0" "0/0" "0/1"
## HiC_scaffold_60_22142128 "0/0" NA "0/0"
## HiC_scaffold_60_27599770 "1/1" "1/1" NA
## HiC_scaffold_60_30608878 "1/1" NA "1|1"
## HiC_scaffold_60_32657324 "0/0" "1|1" "1/1"
## HiC_scaffold_60_32672580 "1/1" NA "1/1"
## HiC_scaffold_60_38856893 "0/0" "1/1" "1/1"
## HiC_scaffold_60_39028335 "1/1" NA "1/1"
## HiC_scaffold_60_40296869 "1/1" NA "0/1"
## HiC_scaffold_60_42775723 "0/0" "0/0" "0/0"
## HiC_scaffold_60_44687906 "0/0" "0/0" "0/0"
## HiC_scaffold_60_44804601 NA "0/0" NA
## HiC_scaffold_60_53696867 "0|1" "0/0" "0/0"
## HiC_scaffold_60_53696868 "0|1" "0/0" "0/0"
## HiC_scaffold_60_60651515 NA "1/1" "0|1"
## HiC_scaffold_60_70678462 "1/1" "1/1" "0/1"
## HiC_scaffold_61_2205328 "0|1" "0/0" "0|1"
## HiC_scaffold_61_2491706 "0/1" NA "1/1"
## HiC_scaffold_61_4009916 "0/0" NA "1|1"
## HiC_scaffold_61_4062917 "0/0" "0/0" "0/0"
## HiC_scaffold_61_4122763 NA NA NA
## HiC_scaffold_61_4216461 "0/0" NA "0/1"
## HiC_scaffold_61_4325053 "1/1" "0/1" "0/0"
## HiC_scaffold_61_9004838 "1|1" "0/0" "0/1"
## HiC_scaffold_61_14635083 "1/1" "0/0" "0/1"
## HiC_scaffold_62_1128608 "1/1" NA "1/1"
## HiC_scaffold_62_11335200 "0/0" "0/0" "0/0"
## HiC_scaffold_62_18828476 "1/1" "1/1" "1/1"
## HiC_scaffold_62_21548870 "1|1" NA "1|1"
## HiC_scaffold_62_23103274 "0/0" NA "0/0"
## HiC_scaffold_62_25793456 "1/1" NA "0/0"
## HiC_scaffold_62_25887474 NA NA "0/1"
## HiC_scaffold_62_28516096 "0|1" NA "0|1"
## HiC_scaffold_62_28516099 "0|1" NA "0|1"
## HiC_scaffold_62_28818725 "0/0" "1|1" "1|1"
## HiC_scaffold_62_28818729 "1/1" "0/0" "0/0"
## HiC_scaffold_62_45207353 "0/0" "1/1" "0/0"
## HiC_scaffold_63_3092269 "1/1" NA "0/1"
## HiC_scaffold_63_3977940 "0/0" "0/0" "1/1"
## HiC_scaffold_63_4084937 "1/1" "0/0" "0/1"
## HiC_scaffold_63_4196326 NA NA "0/1"
## HiC_scaffold_63_6262453 NA NA "1/1"
## HiC_scaffold_63_6350204 "1/1" "1/1" "1/1"
## HiC_scaffold_63_6458794 "1/1" NA "0|1"
## HiC_scaffold_64_9162978 "0/0" NA NA
## HiC_scaffold_64_16876561 "0/0" "0|1" NA
## HiC_scaffold_64_17543009 "1/1" "0/0" "0/0"
## HiC_scaffold_64_18925356 "0/0" NA "0/1"
## HiC_scaffold_64_19133050 "1|1" "0/0" "0/0"
## HiC_scaffold_64_19627769 "1|1" NA "0|1"
## HiC_scaffold_64_20477250 "0/0" NA "0/0"
## HiC_scaffold_64_22816677 "0/0" "0/0" "1/1"
## HiC_scaffold_64_22954654 "0|1" "1|1" "0/0"
## HiC_scaffold_64_22954658 "0|1" "1|1" "0/0"
## HiC_scaffold_64_22954682 "1/1" "1/1" "0/0"
## HiC_scaffold_65_6829971 "1/1" "1/1" "0/0"
## HiC_scaffold_65_8071102 "0/0" NA "0/0"
## HiC_scaffold_65_9023979 "0/0" NA "0/0"
## HiC_scaffold_65_9839671 "1|1" "1/1" "1/1"
## HiC_scaffold_65_10404778 "1|1" "0/0" "0/0"
## HiC_scaffold_65_11327791 "1/1" "1/1" "0/0"
## HiC_scaffold_65_11332104 "0/0" NA "0/0"
## HiC_scaffold_65_34823822 "0/1" "0/0" NA
## HiC_scaffold_65_51418017 "1/1" "1/1" "1/1"
## HiC_scaffold_65_54053979 "1|1" "1|1" NA
## HiC_scaffold_65_57110875 "0/0" NA "1|1"
## HiC_scaffold_66_15615363 "1|1" "1/1" "1|1"
## HiC_scaffold_66_15672090 "0/1" "0/0" "0/1"
## HiC_scaffold_66_17903445 "0/0" NA "1|1"
## HiC_scaffold_66_18298629 "1|1" "1|1" "0|1"
## HiC_scaffold_66_19730676 "1|1" "1|1" "1|1"
## HiC_scaffold_66_23688768 "0/1" "1/1" NA
## HiC_scaffold_66_26614535 "0/0" "0/0" "0/0"
## HiC_scaffold_66_27445665 "0/0" "0/0" "1/1"
## HiC_scaffold_66_29457165 NA "1/1" "0/1"
## HiC_scaffold_66_29457180 NA "0/0" "0/1"
## HiC_scaffold_66_30116287 "1/1" NA "2|2"
## HiC_scaffold_66_31603503 "0/0" NA "1|1"
## HiC_scaffold_66_33261460 "0/1" NA "0/0"
## HiC_scaffold_66_34138981 "0/1" NA "0/0"
## HiC_scaffold_66_34139020 "0/0" NA "1|1"
## HiC_scaffold_66_34142862 NA "0/1" NA
## HiC_scaffold_67_1404390 NA "1/1" "1/1"
## HiC_scaffold_67_28493665 "1/1" "1|1" "0/0"
## HiC_scaffold_67_30243885 "1|1" "0/0" "0/0"
## HiC_scaffold_67_31511806 "0/0" "0/0" "1|1"
## HiC_scaffold_67_34638092 "0/0" NA "0/0"
## HiC_scaffold_67_37534720 "1/1" NA "0|1"
## HiC_scaffold_67_39679546 "0/1" "1/1" "0/0"
## HiC_scaffold_67_39854918 "0|1" "0/0" NA
## HiC_scaffold_67_39860738 NA "0/1" "1/1"
## HiC_scaffold_67_40331656 "0/0" NA "0/1"
## HiC_scaffold_67_40824747 "1|1" NA NA
## HiC_scaffold_68_3438132 "1|1" "1|1" "1|1"
## HiC_scaffold_68_3438133 "1|1" "1|1" "1|1"
## HiC_scaffold_68_11206902 "0/1" "0/0" "1/1"
## HiC_scaffold_68_32770607 "0/1" "0/0" "0/0"
## HiC_scaffold_68_34016823 "0/0" NA NA
## HiC_scaffold_68_34020019 "1/1" "0/0" NA
## HiC_scaffold_68_40296057 "0/0" "0/0" "0|1"
## HiC_scaffold_68_40296059 "0/0" "0/0" "0|1"
## HiC_scaffold_68_65001879 "1/1" NA "0/0"
## HiC_scaffold_69_23311147 "0/0" "0/0" "1|1"
## HiC_scaffold_69_27351303 "0/0" NA "1/1"
## HiC_scaffold_69_29437208 "1/1" "1|1" "0/0"
## HiC_scaffold_69_33699381 NA NA "1|1"
## HiC_scaffold_69_40194698 "1/1" NA "0/0"
## HiC_scaffold_69_48273575 NA "0/0" "0/0"
## HiC_scaffold_69_48348026 "0/0" "0/0" "0/1"
## HiC_scaffold_69_48348034 "0/0" "1|1" "0/1"
## HiC_scaffold_69_49563252 "0/0" NA "1/1"
## HiC_scaffold_69_49593952 NA "1/1" "0/1"
## HiC_scaffold_69_49859037 "0/0" "0/0" NA
## HiC_scaffold_69_51271238 "0/0" NA "1/1"
## HiC_scaffold_69_51529836 "0/0" "0/0" "0/0"
## HiC_scaffold_69_57313650 "0/0" NA "1/1"
## HiC_scaffold_69_57359194 NA "0/0" "0/0"
## HiC_scaffold_6951_523650 "0/0" NA "0/1"
## HiC_scaffold_6951_897126 "0/0" "0/0" "0/0"
## HiC_scaffold_6951_1134482 "0/0" "0/0" "0/1"
## HiC_scaffold_6951_2484960 NA "0/1" "1/1"
## HiC_scaffold_6951_3301273 NA NA "1|1"
## HiC_scaffold_6951_3314609 "0/0" "1/1" "1/1"
## HiC_scaffold_6951_3945993 "0|1" NA NA
## HiC_scaffold_6958_218293 "0/0" NA "0|1"
## HiC_scaffold_6958_449143 "0/0" "0/0" "0/1"
## HiC_scaffold_7_351023 "1/1" "1/1" "0/0"
## HiC_scaffold_7_488024 NA "1|1" "0|1"
## HiC_scaffold_7_492663 "1/1" NA "1/1"
## HiC_scaffold_7_693567 NA NA "0/0"
## HiC_scaffold_7_2379128 "0/0" NA "1/1"
## HiC_scaffold_7_3087721 "1/1" NA "0/1"
## HiC_scaffold_7_3394880 "0/1" NA "1/1"
## HiC_scaffold_7_22247106 "1|1" "0/0" "0/0"
## HiC_scaffold_70_4632611 "0|1" "1|1" "1|1"
## HiC_scaffold_70_14042778 NA "1/1" NA
## HiC_scaffold_71_410844 "0/0" NA "0/0"
## HiC_scaffold_71_1753451 "1/1" NA "1/1"
## HiC_scaffold_71_2283682 "0/0" "0/0" "0/0"
## HiC_scaffold_71_3439685 "0/0" "0/0" "0/0"
## HiC_scaffold_71_17850462 "0/0" NA "0/0"
## HiC_scaffold_71_20588314 "0/1" NA "0/0"
## HiC_scaffold_71_25465351 "0/0" "1|1" "1|1"
## HiC_scaffold_71_25465352 "0/0" "1|1" "1|1"
## HiC_scaffold_71_26356062 "0/1" "1/1" "0/1"
## HiC_scaffold_72_11785096 "0/1" "1/1" "1/1"
## HiC_scaffold_72_17285854 "1/1" "1/1" "1/1"
## HiC_scaffold_72_23704999 "0|1" NA "1/1"
## HiC_scaffold_72_24465318 "0/0" "0/0" "0/0"
## HiC_scaffold_72_30457277 "0/1" NA "0/1"
## HiC_scaffold_72_32068649 NA NA "1/1"
## HiC_scaffold_72_35058295 "0/0" NA "0/1"
## HiC_scaffold_72_36024997 "0/1" NA "1|1"
## HiC_scaffold_72_37135067 "0/0" "0/0" "1|1"
## HiC_scaffold_72_38410141 NA "0|1" "1/1"
## HiC_scaffold_72_38448056 "0|1" NA "0/0"
## HiC_scaffold_72_41412511 "0/1" "0/0" "0/0"
## HiC_scaffold_73_2192629 "0/0" NA "1|1"
## HiC_scaffold_73_2920208 "1|1" "0/0" "0/0"
## HiC_scaffold_73_4522493 "1/1" "1/1" "1/1"
## HiC_scaffold_73_4748625 "0/0" NA "1/1"
## HiC_scaffold_73_5839336 "0/0" "0/0" "0/0"
## HiC_scaffold_73_9338582 NA NA "1/1"
## HiC_scaffold_73_27393859 "0/0" NA "0|1"
## HiC_scaffold_74_14235619 "0/0" NA "0/0"
## HiC_scaffold_74_14515598 "1/1" NA "0/1"
## HiC_scaffold_74_15116121 "0/0" "0/0" "0/0"
## HiC_scaffold_74_17233613 NA "0/1" "1/1"
## HiC_scaffold_74_17725340 "1|1" NA "1|1"
## HiC_scaffold_74_18418135 "1|1" "0/0" NA
## HiC_scaffold_74_18418138 "1|1" "0/0" NA
## HiC_scaffold_74_21254425 "1/1" "1/1" "0/1"
## HiC_scaffold_74_22261065 "0/0" NA "1/1"
## HiC_scaffold_74_47132519 "0/0" NA "0/0"
## HiC_scaffold_74_50979096 NA "0/0" "0/0"
## HiC_scaffold_74_51060549 "0/0" NA "1/1"
## HiC_scaffold_74_53256803 "0/1" "0/0" "1/1"
## HiC_scaffold_74_55464169 "0/0" "0/0" "0/1"
## HiC_scaffold_74_55515512 "1/1" "0/0" "1/1"
## HiC_scaffold_74_55999260 "0/0" "0/0" NA
## HiC_scaffold_74_57404902 "1|1" NA "1|1"
## HiC_scaffold_74_58181927 "0|1" NA "1|1"
## HiC_scaffold_74_58198600 "0/0" "1/1" "1/1"
## HiC_scaffold_74_63060195 NA "1/1" "1/1"
## HiC_scaffold_75_5345466 NA "1|1" "0/0"
## HiC_scaffold_75_5346522 "0/0" "1/1" "1/1"
## HiC_scaffold_75_5346535 "0/0" "0/0" "1/1"
## HiC_scaffold_75_9850973 "1|1" "1/1" "0/1"
## HiC_scaffold_76_27149820 NA "0/0" "1/1"
## HiC_scaffold_76_31582908 "1/1" "1/1" "0/0"
## HiC_scaffold_76_31792815 "0/1" NA "0/0"
## HiC_scaffold_76_35352820 "0/0" NA "0/0"
## HiC_scaffold_76_57782171 "1/1" "0/0" "1/1"
## HiC_scaffold_76_59862401 NA "0/0" "0/0"
## HiC_scaffold_76_61095594 "1|1" "0/0" "0/0"
## HiC_scaffold_76_65496128 "0/1" NA "0/0"
## HiC_scaffold_76_68965847 "1/1" NA "0/1"
## HiC_scaffold_76_68966411 "1/1" "0/0" "1/1"
## HiC_scaffold_76_69823482 NA NA "0/0"
## HiC_scaffold_76_73343841 "1/1" NA "1/1"
## HiC_scaffold_77_3598274 "1|1" "0/0" "0/0"
## HiC_scaffold_77_6982137 "0/1" NA "0/0"
## HiC_scaffold_77_11021994 "0/1" "1/1" "0/0"
## HiC_scaffold_77_13608165 "0/1" NA "0/1"
## HiC_scaffold_77_16888594 "0/0" "0/0" "0/0"
## HiC_scaffold_77_16888623 "0/0" NA NA
## HiC_scaffold_77_16889448 "0/1" "0/0" "0/1"
## HiC_scaffold_77_39784685 "1|1" "0/0" "0/0"
## HiC_scaffold_77_44375866 "0/1" "0/0" "1/1"
## HiC_scaffold_77_45385370 "0/0" "0/0" "0/1"
## HiC_scaffold_78_5719919 "0/0" "0/0" "0/1"
## HiC_scaffold_78_11353297 "1|1" NA "1/1"
## HiC_scaffold_78_27316392 "0/0" NA "0/0"
## HiC_scaffold_78_48124809 "0/0" NA "0/0"
## HiC_scaffold_78_48124826 NA "1/1" "0/1"
## HiC_scaffold_78_48126176 "0/1" NA "0/0"
## HiC_scaffold_78_48279096 "0/0" "0/0" "0/0"
## HiC_scaffold_78_48434558 "1|1" NA "1|1"
## HiC_scaffold_78_49759181 "1|1" NA "0|1"
## HiC_scaffold_78_49759192 "1|1" NA "0/1"
## HiC_scaffold_78_49759215 "1/1" NA "0/1"
## HiC_scaffold_78_51364025 "1/1" "1/1" "1/1"
## HiC_scaffold_78_55395445 "0/0" "1/1" "1/1"
## HiC_scaffold_78_59610866 "0/0" NA "0/0"
## HiC_scaffold_78_62136661 "0/1" NA "0/1"
## HiC_scaffold_79_1643780 "1/1" NA "0/0"
## HiC_scaffold_79_2519178 "1/1" NA "1/1"
## HiC_scaffold_79_2858100 "1/1" "1/1" "0/0"
## HiC_scaffold_79_3922454 "0/0" NA "0/1"
## HiC_scaffold_79_4127878 "0/0" "1|1" "1|1"
## HiC_scaffold_79_4543693 "0/0" NA NA
## HiC_scaffold_79_11507678 "0/1" NA "0/0"
## HiC_scaffold_79_12618812 "0/1" NA "1/1"
## HiC_scaffold_79_14185404 "1|1" NA "1|1"
## HiC_scaffold_79_17120237 "1/1" "1/1" "0/0"
## HiC_scaffold_79_17120254 "1/1" "1/1" "0/0"
## HiC_scaffold_79_35551507 NA "1|1" "1/1"
## HiC_scaffold_79_35551543 NA "1/1" "1/1"
## HiC_scaffold_79_38927423 "0/0" "1|1" "0/0"
## HiC_scaffold_79_42623307 NA "1|1" "1|1"
## HiC_scaffold_79_43179786 "1|1" "0/0" "0|1"
## HiC_scaffold_79_43180099 "1/1" NA "0/1"
## HiC_scaffold_79_43828078 "0/0" "0/0" "1|1"
## HiC_scaffold_79_43872513 "0/1" "0/0" "0/0"
## HiC_scaffold_79_44627215 "1/1" NA "1/1"
## HiC_scaffold_79_50772769 "0/1" NA "0/0"
## HiC_scaffold_79_55468575 "0/0" NA "0/0"
## HiC_scaffold_79_55816114 "1/1" NA "1/1"
## HiC_scaffold_79_59915784 "1/1" NA "0/0"
## HiC_scaffold_79_60165298 "0/0" "0|1" "0|1"
## HiC_scaffold_79_60165305 "0/0" "0|1" "0/0"
## HiC_scaffold_79_69145556 "0/0" NA "0/1"
## HiC_scaffold_79_70208305 "0|1" "0|1" "0|1"
## HiC_scaffold_79_73412292 "0/0" NA "0/0"
## HiC_scaffold_79_73416663 NA NA "0/0"
## HiC_scaffold_79_73416688 "0/0" NA "0/0"
## HiC_scaffold_79_76863102 "1/1" NA "0/1"
## HiC_scaffold_79_81279649 "0/0" NA "0/0"
## HiC_scaffold_79_81499990 "1/1" NA NA
## HiC_scaffold_79_82319836 NA "0/0" "0|1"
## HiC_scaffold_79_82319849 NA "1/1" "0|1"
## HiC_scaffold_79_83163707 "1/1" NA "0/0"
## HiC_scaffold_79_86283512 "1/1" NA "0/0"
## HiC_scaffold_79_87123758 "1|1" "1|1" "1|1"
## HiC_scaffold_79_88362889 "0/0" "0/0" "1/1"
## HiC_scaffold_79_88599431 "0/0" NA "1/1"
## HiC_scaffold_79_89322919 NA "0/0" "1/1"
## HiC_scaffold_79_89331918 "1|1" NA "1|1"
## HiC_scaffold_79_91340958 "0/1" "1|1" "0/0"
## HiC_scaffold_8_13649836 "1|1" NA "0/1"
## HiC_scaffold_8_13650752 "1|1" "1|1" "0/1"
## HiC_scaffold_8_23818233 "0/1" "1/1" "1/1"
## HiC_scaffold_8_24123972 "0/0" "1|1" "1|1"
## HiC_scaffold_8_24230791 "1|1" "0/0" "0/0"
## HiC_scaffold_8_24588423 "0/1" "0/0" "0|2"
## HiC_scaffold_8_25348483 "0/1" "0/0" NA
## HiC_scaffold_8_25421933 "1/1" "0/0" "0/1"
## HiC_scaffold_8_25772942 "0/1" NA "0/0"
## HiC_scaffold_8_26289589 "0/0" NA "1|1"
## HiC_scaffold_8_27602740 "1|1" "0/0" "0/0"
## HiC_scaffold_8_28159063 "1/1" NA "0/1"
## HiC_scaffold_8_30829320 "0/0" "1/1" "1|1"
## HiC_scaffold_8_31044084 "1|1" NA "0/0"
## HiC_scaffold_8_31415507 "1|1" "0/0" NA
## HiC_scaffold_8_32594682 NA "1|1" "0/1"
## HiC_scaffold_80_3617847 "1/1" "0/0" NA
## HiC_scaffold_80_5758183 "0/0" "1|1" "0/1"
## HiC_scaffold_80_6760006 "1|1" "1|1" "0/0"
## HiC_scaffold_80_6760037 "1/1" NA "0/0"
## HiC_scaffold_80_7772622 NA "0/0" "1/1"
## HiC_scaffold_80_7919533 "0/1" NA "0/1"
## HiC_scaffold_80_8110052 "1|1" NA "1|1"
## HiC_scaffold_80_8193366 "0/0" "1/1" "1/1"
## HiC_scaffold_80_8625784 NA "1/1" "1/1"
## HiC_scaffold_80_8912846 "0/0" "0/0" "0/0"
## HiC_scaffold_80_9544102 "0/1" "0/0" "0/0"
## HiC_scaffold_80_10770701 "1/1" NA "0/1"
## HiC_scaffold_80_11590146 NA "0/0" "1/1"
## HiC_scaffold_80_16953653 "0/1" NA "0/0"
## HiC_scaffold_80_18938832 "1|1" NA NA
## HiC_scaffold_80_19015946 "1/1" NA "0/0"
## HiC_scaffold_80_19404001 NA NA "1/1"
## HiC_scaffold_80_25346708 "0/0" "1|1" NA
## HiC_scaffold_80_37479851 "1/1" NA NA
## HiC_scaffold_80_37507516 "0/0" NA "0/0"
## HiC_scaffold_81_1187192 NA "0/0" "1/1"
## HiC_scaffold_81_2689826 "0/0" "0/0" "1|1"
## HiC_scaffold_81_2690751 "1|1" "0/0" "0/0"
## HiC_scaffold_81_6614123 NA "0/1" "0/1"
## HiC_scaffold_81_7836855 "1/1" NA NA
## HiC_scaffold_81_10334868 NA NA "1/1"
## HiC_scaffold_81_10458752 "0/0" "1/1" "1/1"
## HiC_scaffold_81_17515538 "0/0" "1|1" "0/1"
## HiC_scaffold_81_40271282 "1/1" NA "0/0"
## HiC_scaffold_81_40271294 "0/0" NA "1/1"
## HiC_scaffold_81_41096427 NA NA "0/0"
## HiC_scaffold_81_41096444 NA NA "0/0"
## HiC_scaffold_81_43820595 "1/1" "0/0" "1/1"
## HiC_scaffold_81_43820732 "0/0" "0/0" "1|1"
## HiC_scaffold_81_43854278 "0/1" NA "0/1"
## HiC_scaffold_81_44804862 "1/1" NA "0/1"
## HiC_scaffold_81_45063428 "0|1" NA "0/0"
## HiC_scaffold_81_45950590 NA NA "0/0"
## HiC_scaffold_81_46714752 "1|1" "1|1" "1|1"
## HiC_scaffold_81_46714759 "1|1" "1|1" "1|1"
## HiC_scaffold_81_47170397 "1|1" "1|1" "1|1"
## HiC_scaffold_81_47628201 "1|1" "0/0" "1|1"
## HiC_scaffold_81_48105216 "0/1" "0/0" "0/1"
## HiC_scaffold_81_48932070 "0/1" NA "0/1"
## HiC_scaffold_81_54050146 "0/0" NA "1/1"
## HiC_scaffold_82_5672063 "1/1" NA "1/1"
## HiC_scaffold_82_8796823 "0|1" "1|1" "0/0"
## HiC_scaffold_82_13450959 "0/0" NA "0/0"
## HiC_scaffold_82_26144442 "1/1" "0/0" "0/0"
## HiC_scaffold_82_26147011 "1|1" NA "1|1"
## HiC_scaffold_82_28907834 "1/1" "0/0" NA
## HiC_scaffold_82_34413793 "1/1" NA "0/0"
## HiC_scaffold_82_34413800 "0/0" NA "0/0"
## HiC_scaffold_82_36173035 "0/1" NA "0/0"
## HiC_scaffold_82_40539273 "1/1" "1/1" NA
## HiC_scaffold_82_41470256 "1/1" "0/1" "1/1"
## HiC_scaffold_83_23993605 NA "0/0" NA
## HiC_scaffold_83_35035961 "1/1" "0/0" "0/0"
## HiC_scaffold_83_43423618 "0/0" "0/0" "0/0"
## HiC_scaffold_83_46920654 "0/0" "0/0" "1/1"
## HiC_scaffold_83_46934197 "0/1" "0/1" "0|1"
## HiC_scaffold_84_356301 "0/0" "0/0" NA
## HiC_scaffold_84_5761817 "0/0" "0/0" "0/1"
## HiC_scaffold_84_5769022 "1|1" "1|1" "1|1"
## HiC_scaffold_84_6288130 "0|1" "1|1" "0|1"
## HiC_scaffold_84_6288141 "1/1" "1|1" "1|1"
## HiC_scaffold_84_6288147 "0/0" "0/0" "0|1"
## HiC_scaffold_84_7069238 "0/0" NA "1|1"
## HiC_scaffold_84_9131309 "0/1" NA "0/1"
## HiC_scaffold_84_10148442 "0/0" "1/1" "0/0"
## HiC_scaffold_84_14659391 "0/0" "1/1" "1/1"
## HiC_scaffold_84_16302752 NA "1/1" "2|2"
## HiC_scaffold_84_18463244 "1/1" "1/1" "1/1"
## HiC_scaffold_84_22909575 "0/0" NA "0/0"
## HiC_scaffold_84_29275266 "1/1" "0/0" "0/0"
## HiC_scaffold_84_31184610 "1|1" NA "1/1"
## HiC_scaffold_84_33093169 "1|1" "0/0" "1|1"
## HiC_scaffold_84_37675180 NA NA "1/1"
## HiC_scaffold_84_39501814 "0/1" NA "0/1"
## HiC_scaffold_84_50169438 "0/0" "0/0" "0|1"
## HiC_scaffold_84_50169445 "0/0" "0/0" "0|1"
## HiC_scaffold_84_51231025 NA NA "1/1"
## HiC_scaffold_85_9792207 "1|1" NA "0/1"
## HiC_scaffold_85_11784233 NA NA "0/0"
## HiC_scaffold_85_11911022 "1|1" NA "1|1"
## HiC_scaffold_85_11911142 "0/0" "0/0" "1/1"
## HiC_scaffold_85_11913828 "1/1" "0/0" "0/0"
## HiC_scaffold_85_11913831 "0/0" NA NA
## HiC_scaffold_85_12353081 "0/0" "1/1" "1/1"
## HiC_scaffold_85_12414551 "0/0" NA "0/0"
## HiC_scaffold_85_13043967 "1|1" "0/0" "0/0"
## HiC_scaffold_85_13221888 "1/1" NA "1/1"
## HiC_scaffold_85_27008863 "0/1" "0/0" "0/1"
## HiC_scaffold_85_28992264 "1|1" "0|1" "0/1"
## HiC_scaffold_85_28992268 "1|1" "0|1" "1/1"
## HiC_scaffold_85_64310850 "0|1" NA "1|1"
## HiC_scaffold_85_65135112 "1|1" NA "0/0"
## HiC_scaffold_85_65563529 "1/1" NA NA
## HiC_scaffold_86_1949664 "1/1" "0/0" "1|1"
## HiC_scaffold_86_5340423 "0/1" "0/0" "1/1"
## HiC_scaffold_86_5483991 "0/1" NA "0/0"
## HiC_scaffold_86_8928469 "0/0" NA "0/1"
## HiC_scaffold_86_23727924 NA "0/0" "0/0"
## HiC_scaffold_86_24825818 "1|1" "1|1" "1|1"
## HiC_scaffold_86_25333718 NA NA "1/1"
## HiC_scaffold_86_29668168 "1|1" "0/0" "0/0"
## HiC_scaffold_86_30914243 "0/0" NA "0/0"
## HiC_scaffold_86_32040320 "0/0" NA NA
## HiC_scaffold_86_32040329 "0/0" NA NA
## HiC_scaffold_86_32125061 "0/1" "0/0" "0/0"
## HiC_scaffold_86_32144758 "0/0" NA NA
## HiC_scaffold_86_32153692 "1/1" "0/0" "0/0"
## HiC_scaffold_86_32534129 "0/0" NA "0/0"
## HiC_scaffold_86_32605768 "0/0" NA "0/0"
## HiC_scaffold_86_36355399 "1/1" "0/0" "0/0"
## HiC_scaffold_86_36357265 "0/0" NA "1/1"
## HiC_scaffold_87_1253643 "1/1" "1/1" "0/1"
## HiC_scaffold_87_2137958 "0/0" "0/0" "0/0"
## HiC_scaffold_87_3980100 "1/1" "1/1" "1/1"
## HiC_scaffold_87_4395923 "0/0" "0/0" "0/0"
## HiC_scaffold_87_5489328 "1|1" "0/0" "1|1"
## HiC_scaffold_87_6300441 "0/0" "1/1" "1/1"
## HiC_scaffold_87_16306904 "1/1" "1/1" "0/1"
## HiC_scaffold_87_44780945 "0/0" "0/0" "1|1"
## HiC_scaffold_88_5584327 "1/1" NA "1/1"
## HiC_scaffold_88_7104630 "1|1" "0/0" "0/0"
## HiC_scaffold_88_7104631 "1|1" "0/0" "0/0"
## HiC_scaffold_88_7104638 "1|1" "1|1" "1|1"
## HiC_scaffold_88_7104639 "1|1" "0/0" "1|1"
## HiC_scaffold_88_7104640 "1|1" "1|1" "1|1"
## HiC_scaffold_88_7479340 "1|1" NA "0/0"
## HiC_scaffold_88_8773607 "1|1" NA "1|1"
## HiC_scaffold_88_9883678 "1|1" "1|1" "1|1"
## HiC_scaffold_88_10878718 "1/1" NA "0/0"
## HiC_scaffold_88_19365116 NA "1/1" "1/1"
## HiC_scaffold_88_20477349 "0/1" "0/0" "1/1"
## HiC_scaffold_88_20557885 "0/0" NA "1/1"
## HiC_scaffold_89_675045 "0/0" "0/0" "0/1"
## HiC_scaffold_89_2815845 "0/0" "0/0" NA
## HiC_scaffold_89_2843940 "0/0" "0/0" "0/0"
## HiC_scaffold_89_3018830 "1/1" "1/1" "0/1"
## HiC_scaffold_89_13745506 "0/1" "0/0" "1/1"
## HiC_scaffold_89_30006907 "0/1" "1/1" "1/1"
## HiC_scaffold_89_36509388 "1|1" "0/0" "1|1"
## HiC_scaffold_89_38703735 "0/0" "0/1" "0/0"
## HiC_scaffold_89_38764895 "1/1" "1/1" "0/0"
## HiC_scaffold_89_42052609 "0/0" "0/0" "0/0"
## HiC_scaffold_89_42054991 "1/1" "0/0" "0/0"
## HiC_scaffold_89_44306958 "0/0" NA "1|1"
## HiC_scaffold_89_44338206 NA NA NA
## HiC_scaffold_89_45298973 "1/1" "1/1" "1/1"
## HiC_scaffold_9_3529921 "1/1" NA "0/0"
## HiC_scaffold_9_5660454 NA NA "0/0"
## HiC_scaffold_9_5660461 NA NA "1|1"
## HiC_scaffold_9_5854070 "0/0" "1/1" "1/1"
## HiC_scaffold_9_6142415 "1|1" "1|1" "1|1"
## HiC_scaffold_9_6142436 "1|1" "1|1" "1|1"
## HiC_scaffold_9_6143781 "1/1" NA "1/1"
## HiC_scaffold_9_6654825 "1/1" NA "0/1"
## HiC_scaffold_9_7094545 "1|1" "1|1" "1|1"
## HiC_scaffold_9_7100208 "1|1" NA "1|1"
## HiC_scaffold_9_7109988 "1/1" "1/1" NA
## HiC_scaffold_9_7111922 "0/1" "0/0" "1|1"
## HiC_scaffold_9_8235781 "1/1" "1/1" "0/1"
## HiC_scaffold_9_8279558 "0/0" "0/1" NA
## HiC_scaffold_9_15679481 "0/0" "0/0" "0/0"
## HiC_scaffold_9_18082611 "0/0" "0/0" "0/0"
## HiC_scaffold_9_18090830 "1/1" "1/1" "1/1"
## HiC_scaffold_9_30240531 "1/1" "0/0" "1/1"
## HiC_scaffold_90_10418696 "0/1" "0/0" "0/0"
## HiC_scaffold_90_11470224 "1/1" "0/0" "0/0"
## HiC_scaffold_90_13593319 NA NA "0/0"
## HiC_scaffold_90_16260161 "1|1" "0/1" "0/0"
## HiC_scaffold_90_22325499 "0/0" NA "1/1"
## HiC_scaffold_90_23574204 "1/1" "1|1" NA
## HiC_scaffold_90_23609908 "0/0" NA "0/0"
## HiC_scaffold_90_23623078 "1|1" "0/0" "0/0"
## HiC_scaffold_90_23626883 "0/0" NA "0/0"
## HiC_scaffold_90_23812663 "1/1" "1/1" "1/1"
## HiC_scaffold_90_25939283 "0/0" "0/0" "1/1"
## HiC_scaffold_90_25985714 "1/1" "0/0" "0/0"
## HiC_scaffold_90_30751272 "1/1" NA "0/0"
## HiC_scaffold_90_31232025 NA "1|1" "1|1"
## HiC_scaffold_90_31245699 "0/0" NA "1/1"
## HiC_scaffold_90_31527975 "0/0" NA "0/0"
## HiC_scaffold_90_31546172 "0/1" "0/0" "1/1"
## HiC_scaffold_90_38511996 "0|1" "0/0" NA
## HiC_scaffold_90_38511999 "0/1" "1/1" NA
## HiC_scaffold_90_38517279 "0/1" NA "1/1"
## HiC_scaffold_90_40624104 "0/0" NA "0/1"
## HiC_scaffold_91_5644765 "0/0" "0/0" "1|1"
## HiC_scaffold_91_5867214 "0/0" "0/0" "0/0"
## HiC_scaffold_91_5867226 "0/0" "0/0" "0/0"
## HiC_scaffold_91_7704263 "0/0" NA "0/0"
## HiC_scaffold_91_7871360 "1/1" NA "0/1"
## HiC_scaffold_91_8538014 "1/1" "1/1" "1/1"
## HiC_scaffold_91_13230485 "1|1" NA NA
## HiC_scaffold_91_28696118 "0/0" NA "1/1"
## HiC_scaffold_91_28696625 "0/0" NA "1|1"
## HiC_scaffold_91_42177482 "0/1" NA "0/0"
## HiC_scaffold_91_46813640 "1/1" NA "0/0"
## HiC_scaffold_92_23783035 "0/0" "0/0" "0/0"
## HiC_scaffold_92_23783036 "0/0" "0/0" "0/0"
## HiC_scaffold_92_24712793 "0/0" NA NA
## HiC_scaffold_92_28698258 "0|1" NA "1/1"
## HiC_scaffold_92_40691582 "0/0" "1/1" "0/0"
## HiC_scaffold_92_43967712 "0/0" "0/0" NA
## HiC_scaffold_92_47147572 "1|1" NA "0|1"
## HiC_scaffold_92_49042714 "0/0" NA "0|1"
## HiC_scaffold_92_49042715 "0/0" NA "0|1"
## HiC_scaffold_92_53634002 "1/1" NA "0/0"
## HiC_scaffold_92_58211868 "0/0" "1|1" "0/0"
## HiC_scaffold_92_60114155 NA "0/0" "0/0"
## HiC_scaffold_92_63603483 "0/0" "0/0" "0/0"
## HiC_scaffold_92_64797225 NA "0/0" "0/0"
## HiC_scaffold_92_68367476 "0/0" NA "0/0"
## HiC_scaffold_93_1912167 "1/1" "1/1" "0/0"
## HiC_scaffold_93_2485978 "0/0" "0/0" "0/0"
## HiC_scaffold_93_3227638 "0/1" "0/0" "0/0"
## HiC_scaffold_93_3227641 "0/1" "1|1" "0|1"
## HiC_scaffold_93_13971208 "0/0" "0/0" "1/1"
## HiC_scaffold_93_13987080 "1/1" NA "0/0"
## HiC_scaffold_93_21125468 "0/0" NA "1/1"
## HiC_scaffold_93_21845293 "0/1" "0/0" "0/0"
## HiC_scaffold_93_21845310 "0/0" "1|1" "1|1"
## HiC_scaffold_93_21846342 "0/0" NA "0/0"
## HiC_scaffold_93_21846356 "1/1" "0/0" "0/1"
## HiC_scaffold_93_22589723 "1/1" "1/1" NA
## HiC_scaffold_93_22619278 "1/1" NA "1/1"
## HiC_scaffold_93_22631258 "0/0" NA "0|1"
## HiC_scaffold_93_22631266 "0/0" NA "0|1"
## HiC_scaffold_94_3110102 "0|1" NA NA
## HiC_scaffold_94_3205919 "1/1" "1/1" "1/1"
## HiC_scaffold_94_9023846 "1/1" NA NA
## HiC_scaffold_94_11572820 "0/0" "0/0" "1/1"
## HiC_scaffold_94_12368532 NA "1/1" "0/0"
## HiC_scaffold_94_42179418 "1/1" NA "1/1"
## HiC_scaffold_94_42179519 "0/0" "0/0" "0/0"
## HiC_scaffold_94_51646206 "0/0" "0/0" NA
## HiC_scaffold_94_52781289 "0/0" "0/0" "0/0"
## HiC_scaffold_94_53790035 NA NA "0/1"
## HiC_scaffold_94_53792738 NA "0/0" "1/1"
## HiC_scaffold_94_56768905 "0/0" "1|1" "1|1"
## HiC_scaffold_946_81276 "1/1" "1/1" "1/1"
## HiC_scaffold_95_3189690 NA NA "1/1"
## HiC_scaffold_95_4397298 "1|1" NA "1|1"
## HiC_scaffold_95_9469157 "1|1" NA "0/0"
## HiC_scaffold_95_10641411 NA "1/1" "1/1"
## HiC_scaffold_95_10949821 NA NA "1/1"
## HiC_scaffold_95_12993394 "1|1" NA "0/0"
## HiC_scaffold_95_15515793 "0/0" "0/0" "0/0"
## HiC_scaffold_95_15608785 "1|1" NA "0/0"
## HiC_scaffold_95_15609137 "0/1" "0/0" "0/0"
## HiC_scaffold_95_16295316 "0/0" "0/0" NA
## HiC_scaffold_95_22656165 "1|1" NA "0|1"
## HiC_scaffold_95_25885727 "0/0" "0/0" NA
## HiC_scaffold_96_10460019 "0/0" NA "0/0"
## HiC_scaffold_96_27155785 "0/1" "0/0" "0/0"
## HiC_scaffold_96_37939434 "0/0" "0/0" "0|1"
## HiC_scaffold_96_51115048 "0|1" NA "1|1"
## HiC_scaffold_96_51116511 "1/1" NA "0/0"
## HiC_scaffold_96_51915040 "0|1" NA "1|1"
## HiC_scaffold_96_52681287 "0/1" "0/0" "1/1"
## HiC_scaffold_96_53276519 NA "0/0" "0/0"
## HiC_scaffold_97_1736926 "1|1" "1|1" "1|1"
## HiC_scaffold_97_1736994 "1|1" NA "1|1"
## HiC_scaffold_97_3863543 "1|1" NA "1/1"
## HiC_scaffold_97_4200445 "0/0" NA "1/1"
## HiC_scaffold_97_4799162 NA NA NA
## HiC_scaffold_97_5027892 "0/0" "0/0" "1/1"
## HiC_scaffold_97_8007933 "1|1" "1/1" NA
## HiC_scaffold_97_17997210 "0/0" "1|1" "0/0"
## HiC_scaffold_97_18604647 "1/1" "1/1" "1/1"
## HiC_scaffold_97_20239636 "0/1" "0/0" "0/0"
## HiC_scaffold_98_15154096 NA "0/0" "0/0"
## HiC_scaffold_98_22342667 "1/1" NA "1|1"
## HiC_scaffold_98_22634293 "1|1" "1|1" "1|1"
## HiC_scaffold_98_22634294 "1|1" "1|1" "1|1"
## HiC_scaffold_98_22721138 "1/1" NA "1/1"
## HiC_scaffold_98_22869378 "0/0" "0/0" "1/1"
## HiC_scaffold_98_24108405 "0/0" NA "0/0"
## HiC_scaffold_98_27359592 "0|1" NA NA
## HiC_scaffold_98_28549834 NA "0/0" "0/0"
## HiC_scaffold_98_28867520 NA NA "1|1"
## HiC_scaffold_98_28867524 NA "0/0" "1|1"
## HiC_scaffold_98_29431717 "0/0" "1|1" "1|1"
## HiC_scaffold_98_29675109 "0/0" "1/1" "0/0"
## HiC_scaffold_99_1163244 "0/0" "0/0" "0/0"
## HiC_scaffold_99_1451611 "0/0" NA "0/0"
## HiC_scaffold_99_2021961 "0/0" "0/0" "0/0"
## HiC_scaffold_99_5134392 "0/0" "0/0" "0/0"
## HiC_scaffold_99_5239109 "0/0" NA "1/1"
## HiC_scaffold_99_6917738 "1|1" "0/0" "0/0"
## HiC_scaffold_99_11221970 "0/0" "0/0" "1|1"
## HiC_scaffold_99_25982503 "0/1" NA "1/1"
## Tank_11_Crab_1 Tank_11_Crab_2 Tank_11_Crab_3
## HiC_scaffold_1_2523394 NA "0/0" "0/1"
## HiC_scaffold_1_2542157 "0/0" "0/0" "0/0"
## HiC_scaffold_1_2647806 NA NA NA
## HiC_scaffold_1_2970226 "0/0" "0/0" "0/0"
## HiC_scaffold_1_3329447 "0/0" "0/1" "0/0"
## HiC_scaffold_1_3795100 "1|1" "0|1" "1|1"
## HiC_scaffold_10_2221345 "0/0" "0/0" "0/0"
## HiC_scaffold_10_2299490 "0/0" "1|1" "0/1"
## HiC_scaffold_10_2565301 NA "1/1" "0/0"
## HiC_scaffold_10_3864355 "1/1" "0/1" "0/0"
## HiC_scaffold_10_4319900 "0/0" "1|1" "1|1"
## HiC_scaffold_10_4319907 "0/0" "1|1" "1|1"
## HiC_scaffold_10_5404579 "0/0" "1/1" "0/0"
## HiC_scaffold_10_5843373 "0/0" NA "1/1"
## HiC_scaffold_100_854947 "0/0" "0/0" "0/0"
## HiC_scaffold_100_1070817 "1/1" "1/1" "0/1"
## HiC_scaffold_100_2002094 "1|1" "0/0" "0/0"
## HiC_scaffold_100_2002097 "1|1" "0/0" "0/0"
## HiC_scaffold_100_2010331 "1|1" "0/0" "0/1"
## HiC_scaffold_100_5186498 "1/1" "0/0" "1/1"
## HiC_scaffold_100_5828477 "0/0" "0/0" NA
## HiC_scaffold_100_6470419 "0/0" NA "0/0"
## HiC_scaffold_100_6739225 NA "1/1" "1/1"
## HiC_scaffold_100_6739258 NA "1|1" "1|1"
## HiC_scaffold_100_6739264 NA "1|1" "1|1"
## HiC_scaffold_100_6907177 "0/1" "1/1" "0/0"
## HiC_scaffold_100_8384481 "1|1" "0/1" "1/1"
## HiC_scaffold_100_8384495 "1|1" "0/0" "0|1"
## HiC_scaffold_100_9451470 "0/0" "0/2" "0/0"
## HiC_scaffold_100_10464574 "0/0" "0/1" NA
## HiC_scaffold_100_11934792 "0|1" "1|1" NA
## HiC_scaffold_100_11980177 "0/1" NA "1/1"
## HiC_scaffold_100_18465760 "0/0" "1|1" "0/0"
## HiC_scaffold_100_18465762 "0/0" "1|1" "0/0"
## HiC_scaffold_100_18466205 "0/0" "1|1" "0/0"
## HiC_scaffold_100_31738115 "1/1" "1/1" "1/1"
## HiC_scaffold_100_44227362 "0/0" "0/0" "0/0"
## HiC_scaffold_101_12808961 NA "1|1" "0|1"
## HiC_scaffold_101_13897149 "1/1" NA "1/1"
## HiC_scaffold_101_18337279 "0/1" "0/1" "0/0"
## HiC_scaffold_101_20800167 "0/1" "1/1" "1/1"
## HiC_scaffold_102_2260041 "0/0" "1/1" "0/1"
## HiC_scaffold_102_8734519 "0/0" "0/0" "0/1"
## HiC_scaffold_102_10233999 "1|1" "1|1" "0/0"
## HiC_scaffold_102_11446042 NA NA NA
## HiC_scaffold_102_15918694 "0/0" NA NA
## HiC_scaffold_102_15935667 "0/0" "1/1" "0/1"
## HiC_scaffold_102_17442643 "0/1" "1/1" "1|1"
## HiC_scaffold_102_17608969 "0/0" "0/0" "0/0"
## HiC_scaffold_102_20180185 "0/0" "1/1" "0/1"
## HiC_scaffold_102_24788723 NA "1|1" "0/0"
## HiC_scaffold_102_25423729 "1|1" NA "1|1"
## HiC_scaffold_102_39755142 NA "0|1" "0/1"
## HiC_scaffold_102_52046978 "0/0" "0/1" "0/1"
## HiC_scaffold_1027_34152 "1/1" "0/1" "0/0"
## HiC_scaffold_103_601715 "0/1" "1/1" "1/1"
## HiC_scaffold_103_2891384 "0/1" "0/0" "0/0"
## HiC_scaffold_103_8191270 "0|1" "0/0" "0/0"
## HiC_scaffold_103_9521272 "1/1" "1/1" "0/0"
## HiC_scaffold_103_14768909 "1|1" "0/0" "0/0"
## HiC_scaffold_103_19312119 "1|1" "1|1" "0/0"
## HiC_scaffold_103_21284866 "1/1" "0/0" "0/1"
## HiC_scaffold_103_31428453 "0/0" NA "1|1"
## HiC_scaffold_103_42567396 "0/1" "0/0" "0/1"
## HiC_scaffold_103_45921571 "0|1" "1|1" "0|1"
## HiC_scaffold_103_45921573 "0|1" "1|1" "0|1"
## HiC_scaffold_103_49592022 "0/1" NA "0/1"
## HiC_scaffold_103_49620132 "1|1" "1|1" "0/0"
## HiC_scaffold_103_50440915 "0/1" "1|1" "0/0"
## HiC_scaffold_103_51944137 "0/0" NA "1/1"
## HiC_scaffold_103_54308582 "1|1" "0/0" "1|1"
## HiC_scaffold_103_54424067 "1|1" "0/0" NA
## HiC_scaffold_103_56932900 "1/1" NA "1/1"
## HiC_scaffold_103_57470264 "1|1" "1|1" "1|1"
## HiC_scaffold_104_7771140 "0/0" "1/1" "1/1"
## HiC_scaffold_104_9103028 "1/1" "0/1" "0/0"
## HiC_scaffold_104_10633168 "1/1" "0/1" "0/1"
## HiC_scaffold_104_18917031 "1/1" "0/0" NA
## HiC_scaffold_104_20851902 "0/0" "0/0" "0/1"
## HiC_scaffold_104_24451803 "0/0" "1/1" "0/0"
## HiC_scaffold_104_28597688 "0/1" "0/1" "0/1"
## HiC_scaffold_104_40927999 "0/1" NA "0/1"
## HiC_scaffold_104_46490074 "1/1" "0/0" "0/1"
## HiC_scaffold_104_49759053 "0/0" "0/0" "0/0"
## HiC_scaffold_104_57267896 "0/1" "0/1" "0/0"
## HiC_scaffold_104_62570010 "1/1" "1/1" "0/0"
## HiC_scaffold_11_32804173 "1/1" "0/0" "0/0"
## HiC_scaffold_11_34516508 "1/1" "1/1" "1/1"
## HiC_scaffold_11_35332996 "1/1" "1/1" "0/0"
## HiC_scaffold_11_35904027 NA "0/0" "1/1"
## HiC_scaffold_11_41539793 "1|1" "0/0" "0/0"
## HiC_scaffold_11_41604080 "1/1" "1|1" "1|1"
## HiC_scaffold_11_42855323 "1/1" "0/0" "0/0"
## HiC_scaffold_11_45339409 "0/1" "0/1" "0|1"
## HiC_scaffold_11_45339410 "0/1" "0/1" "0/1"
## HiC_scaffold_11_47544035 "0/0" "1/1" "1/1"
## HiC_scaffold_12_7515164 "0/1" "0/1" "0/1"
## HiC_scaffold_12_12640100 NA "1/1" "0/0"
## HiC_scaffold_12_12826705 "0/0" "0/1" "0/1"
## HiC_scaffold_12_14899285 "0/1" "1/1" "0/0"
## HiC_scaffold_12_17465672 "0/1" "0/0" "0/0"
## HiC_scaffold_12_22770710 "0/0" "0/0" "1|1"
## HiC_scaffold_12_32318964 "0/0" NA NA
## HiC_scaffold_12_35136373 "0/0" "0|1" "0|1"
## HiC_scaffold_12_40687860 "1|1" "0/1" "0/0"
## HiC_scaffold_13_2938168 "1/1" "1/1" NA
## HiC_scaffold_13_20350974 "1/1" "0/1" "0/0"
## HiC_scaffold_13_27759554 "0/1" "0/1" "0/1"
## HiC_scaffold_13_28146828 "1|1" "0/0" "1|1"
## HiC_scaffold_13_28146830 "1|1" "0/0" "1|1"
## HiC_scaffold_13_28925343 "1/1" "1/1" "1/2"
## HiC_scaffold_13_31913129 "0/0" "1/1" "0/0"
## HiC_scaffold_13_32078924 "1|1" "0/1" "0/0"
## HiC_scaffold_13_33864805 "1/1" "1/1" "1/1"
## HiC_scaffold_13_34892542 "1/1" "0/1" "0/0"
## HiC_scaffold_13_34893103 "0/0" "0/0" "1|1"
## HiC_scaffold_13_35762551 "0|1" "0/0" "0|1"
## HiC_scaffold_13_35881745 NA "1/1" "1/1"
## HiC_scaffold_13_35881749 NA "0/0" "0/1"
## HiC_scaffold_14_3843214 "1/1" "0/0" NA
## HiC_scaffold_14_25884262 "0/0" "0/0" NA
## HiC_scaffold_14_27050415 "1/1" "1/1" "1/1"
## HiC_scaffold_14_27118495 "1/1" NA "1/1"
## HiC_scaffold_14_27277222 "0/0" "0/0" "0/0"
## HiC_scaffold_14_29215814 NA "1|1" "1|1"
## HiC_scaffold_15_2460398 "0|1" "1|1" "0/0"
## HiC_scaffold_15_2462980 "0/0" "1/1" "0/1"
## HiC_scaffold_15_2467289 "1/1" "1/1" "1/1"
## HiC_scaffold_15_5669141 "1/1" "1/1" "0/0"
## HiC_scaffold_15_13700694 "0/0" "0/0" "0/1"
## HiC_scaffold_15_17825275 "0|1" "1|1" "0|1"
## HiC_scaffold_15_19938475 "0/1" "1/1" "1|1"
## HiC_scaffold_15_23865956 "1|1" "1|1" "1|1"
## HiC_scaffold_15_28837774 "0/0" "0/0" "0/1"
## HiC_scaffold_15_28837810 "0/0" "0/0" "0/0"
## HiC_scaffold_15_28837823 "0/0" "0/0" "0/1"
## HiC_scaffold_15_28837835 "1|1" "0/0" "0|1"
## HiC_scaffold_15_28837841 "1|1" "0/0" "0|1"
## HiC_scaffold_15_28837854 "1/1" "1/1" "1/1"
## HiC_scaffold_15_34827832 "0/0" "1/1" "0/0"
## HiC_scaffold_15_34893807 "0/0" "1/1" "0/1"
## HiC_scaffold_15_35327348 "0/0" NA NA
## HiC_scaffold_15_42161112 "0/0" "0/0" "0/0"
## HiC_scaffold_15_42164926 "0|1" "0/0" "0/0"
## HiC_scaffold_15_42164946 "1/1" "0/0" "0/0"
## HiC_scaffold_15_46289572 NA "1/1" "1/1"
## HiC_scaffold_15_50591576 "1|1" NA "1|1"
## HiC_scaffold_15_50759128 "1/1" "1/1" "0/0"
## HiC_scaffold_15_51188336 "1|1" "0/0" "1|1"
## HiC_scaffold_15_54726640 "0/0" "1/1" "1/1"
## HiC_scaffold_15_54788235 "0/0" "0|1" "0/1"
## HiC_scaffold_15_56162375 "0|1" NA "0/0"
## HiC_scaffold_15_61091106 NA "1/1" "0/0"
## HiC_scaffold_15_61464359 "1/1" "1/1" "1/1"
## HiC_scaffold_15_61510386 "0|1" "0/0" "1/1"
## HiC_scaffold_15_62309788 NA "0/0" "0|1"
## HiC_scaffold_15_62309793 NA "0/0" "0|1"
## HiC_scaffold_15_62771254 "0/0" "0/0" "0/0"
## HiC_scaffold_15_63493927 "1/1" "0/1" "0/0"
## HiC_scaffold_15_64997502 "0/1" "0|1" NA
## HiC_scaffold_15_65007865 "1|1" "1|1" "1|1"
## HiC_scaffold_15_65007879 "1|1" "1|1" "0/0"
## HiC_scaffold_15_66038529 "0|1" "0/1" "0/0"
## HiC_scaffold_15_69811281 "1/1" "1/1" NA
## HiC_scaffold_16_14205925 "0|1" NA NA
## HiC_scaffold_16_30404047 "0|1" NA "0/1"
## HiC_scaffold_16_57413288 NA "1|1" "1|1"
## HiC_scaffold_16_63687578 "0/0" "1|1" "1|1"
## HiC_scaffold_16_74138787 "0/0" "0/1" "0/0"
## HiC_scaffold_16_74140106 "0/0" "0/1" "1/1"
## HiC_scaffold_16_76276015 "0/1" "0/0" NA
## HiC_scaffold_17_11390873 "1|1" NA "0/0"
## HiC_scaffold_17_12551128 "1/1" "0/0" "1/1"
## HiC_scaffold_17_16615612 "0/0" "1/1" NA
## HiC_scaffold_17_18838093 NA "0/0" "1/1"
## HiC_scaffold_17_22801072 "0/0" "1/1" "0/1"
## HiC_scaffold_17_23788599 "0/0" "1|1" "1/1"
## HiC_scaffold_17_29383895 "1/1" "0/0" "0/0"
## HiC_scaffold_17_29618771 "1/1" "0/1" "0/0"
## HiC_scaffold_17_29976139 "1/1" "0/0" "0/1"
## HiC_scaffold_17_31107213 "1/1" "1|1" "0/1"
## HiC_scaffold_17_32493792 "0/0" "0/1" "0/0"
## HiC_scaffold_17_33732050 "0/0" "1|1" "1|1"
## HiC_scaffold_17_33801314 NA "0/0" "0/1"
## HiC_scaffold_17_34081889 "1/1" "1/1" "1/1"
## HiC_scaffold_18_227565 "0/1" "1/1" "1/1"
## HiC_scaffold_18_1213486 "1/1" "1/1" "0/1"
## HiC_scaffold_18_1701312 "0/0" "0|1" "2/2"
## HiC_scaffold_18_3506437 NA "1/1" "1/1"
## HiC_scaffold_18_6304978 "1/1" "1/1" "1/1"
## HiC_scaffold_18_6351493 "1/1" "1/1" "1/1"
## HiC_scaffold_18_6358009 NA "0/0" "0/0"
## HiC_scaffold_18_10770701 "1/1" "0/0" "1/1"
## HiC_scaffold_18_13342858 "1/1" "1/1" "1/1"
## HiC_scaffold_18_20045832 "0/0" NA "0/0"
## HiC_scaffold_18_22682683 "0/0" NA "0/0"
## HiC_scaffold_18_26337790 "0/0" "0/0" "1|1"
## HiC_scaffold_18_48929148 "1/1" "1|1" "0/1"
## HiC_scaffold_18_51490626 NA "0/0" NA
## HiC_scaffold_18_53723137 "0|1" "0|1" "0/1"
## HiC_scaffold_18_54496637 "0|0" NA "0|1"
## HiC_scaffold_18_55294388 "0/0" "0/1" "0/0"
## HiC_scaffold_19_279726 "0/0" "0/0" "0/1"
## HiC_scaffold_19_6426572 NA "0/0" "0/1"
## HiC_scaffold_19_6575887 "1|1" "1|1" "0/1"
## HiC_scaffold_19_7755254 "0/0" "0/1" "1/1"
## HiC_scaffold_19_9301421 "0/0" "0/0" "0/1"
## HiC_scaffold_19_9357388 "0/1" "0/0" "1|1"
## HiC_scaffold_19_9778841 "1/1" "1/1" "1/1"
## HiC_scaffold_19_10928976 "0/0" "0/0" "1|1"
## HiC_scaffold_19_10928980 "0/0" "0/0" "1|1"
## HiC_scaffold_19_10928982 "1|1" "1|1" "0/0"
## HiC_scaffold_19_11106347 "0/1" "0/0" "0/0"
## HiC_scaffold_19_11590139 "0/1" "1/1" "0/1"
## HiC_scaffold_19_11665300 "1/1" "1/1" "0/1"
## HiC_scaffold_19_14793640 "0/1" "0/0" "0/1"
## HiC_scaffold_19_22112743 "0/0" "1|1" "0/0"
## HiC_scaffold_19_25473671 NA "1/1" "0/1"
## HiC_scaffold_19_25473692 NA "0/0" "0/0"
## HiC_scaffold_19_28110829 "1|1" "1|1" "1|1"
## HiC_scaffold_19_28465002 NA "1|1" "0/1"
## HiC_scaffold_19_28465167 "0/0" "0/0" "0/1"
## HiC_scaffold_19_30106869 NA "0/1" "0/1"
## HiC_scaffold_19_52538858 "1/1" "1/1" "1/1"
## HiC_scaffold_19_52596196 "1/1" "0/0" "0/0"
## HiC_scaffold_19_53482993 "0/1" "1/1" "0/1"
## HiC_scaffold_19_54312637 "1/1" NA "1/1"
## HiC_scaffold_19_59345841 "1|1" "1|1" "1|1"
## HiC_scaffold_2_3296144 "1|1" "1|1" "1|1"
## HiC_scaffold_2_3418589 "0/1" "1/1" "0/0"
## HiC_scaffold_2_3864060 "0/1" "0/0" "1/1"
## HiC_scaffold_2_4104755 "0/0" "0/0" "0/0"
## HiC_scaffold_2_4104758 "0/0" "0/0" "0/0"
## HiC_scaffold_2_8316721 "0/1" NA "0/0"
## HiC_scaffold_2_9098999 "1/1" "0/0" NA
## HiC_scaffold_2_10457537 "1/1" "1/1" NA
## HiC_scaffold_2_19048125 "1/1" "0/1" "1/1"
## HiC_scaffold_2_21748201 "1/1" "0/0" "1|1"
## HiC_scaffold_2_33187764 "0/0" "0|1" "1|1"
## HiC_scaffold_2_33187770 "0/0" "0|1" "1|1"
## HiC_scaffold_2_33187959 NA "1/1" "0/0"
## HiC_scaffold_2_41603929 "1/1" "0/1" "1/1"
## HiC_scaffold_2_52233191 "1/1" "0/1" "0/0"
## HiC_scaffold_2_52400748 "1/1" "1|1" "0/0"
## HiC_scaffold_2_52403793 "0/1" "1|1" NA
## HiC_scaffold_2_52799130 "1|1" NA "0/1"
## HiC_scaffold_20_10332897 "0/0" NA "0/1"
## HiC_scaffold_20_17198418 "0/0" "0/0" "0/0"
## HiC_scaffold_20_17915398 "1|1" "1|1" "1|1"
## HiC_scaffold_20_18872955 "0/0" "0/0" "0/0"
## HiC_scaffold_20_19055301 "1/1" NA "1/1"
## HiC_scaffold_20_19150094 "0/1" "1/1" "1/1"
## HiC_scaffold_20_20651022 "0/0" "0/1" "0/0"
## HiC_scaffold_20_22651296 "0/1" "1/1" "1/1"
## HiC_scaffold_21_2009156 "0/1" "0|1" "1|1"
## HiC_scaffold_21_2435648 "1/1" NA "0/0"
## HiC_scaffold_21_7164210 "0/0" "1|1" "0|1"
## HiC_scaffold_21_9786512 "0/0" "1/1" "0/0"
## HiC_scaffold_21_12424922 "1|1" NA "0/0"
## HiC_scaffold_21_17966833 "1/1" "1/1" "0/0"
## HiC_scaffold_21_19025429 "0/1" "1/1" NA
## HiC_scaffold_21_20058318 "0|1" "0/1" "0/0"
## HiC_scaffold_21_20562855 "0|1" "0/0" "0/0"
## HiC_scaffold_21_20661860 "0/0" "0/0" "0/0"
## HiC_scaffold_21_20895395 "0/0" "0/0" NA
## HiC_scaffold_21_21158811 "1|1" "2|2" "1|1"
## HiC_scaffold_21_22250857 "0/1" "0/1" "0/1"
## HiC_scaffold_21_22250866 "0|1" "0/0" "0/0"
## HiC_scaffold_21_22257737 NA "1/1" NA
## HiC_scaffold_21_22644667 "1|1" "0/0" "1|1"
## HiC_scaffold_21_22644673 "1|1" "0/0" "1|1"
## HiC_scaffold_21_22666888 "1/1" "0/0" "0/1"
## HiC_scaffold_21_23905416 NA NA "0/0"
## HiC_scaffold_21_23981651 "0/0" "0/0" "0/0"
## HiC_scaffold_21_24287068 "0/0" "0/0" "0/0"
## HiC_scaffold_21_30798434 "0/0" NA "1|1"
## HiC_scaffold_21_35006232 NA "0/0" "1/1"
## HiC_scaffold_21_35779294 "0/0" "1/1" "0/0"
## HiC_scaffold_22_124910 "0/0" "0/0" "0/1"
## HiC_scaffold_22_751023 "1/1" "1/1" "1/1"
## HiC_scaffold_22_1042644 "0/0" "0/0" "0/0"
## HiC_scaffold_22_1044708 "0/0" "0/0" "1/1"
## HiC_scaffold_22_2174911 "0/1" "0/0" "1/1"
## HiC_scaffold_22_3431122 "0/0" "0/0" "0/0"
## HiC_scaffold_22_3446787 "1|1" "0|1" "1|1"
## HiC_scaffold_22_3451756 "1|1" "1|1" NA
## HiC_scaffold_22_3720435 "0/1" "0/0" "0/0"
## HiC_scaffold_22_4065466 "0/0" "0/0" "0/0"
## HiC_scaffold_22_4739889 "0/0" "0/2" "0/0"
## HiC_scaffold_22_4918263 "1|1" NA "1|1"
## HiC_scaffold_22_5750008 "1/1" "1/1" "1/1"
## HiC_scaffold_22_5769942 "1|1" "0/0" "0/0"
## HiC_scaffold_22_28264522 "0/0" "0/0" "0/1"
## HiC_scaffold_22_28265115 "0/0" "1/1" "1/1"
## HiC_scaffold_22_29205851 NA "1/1" "0/1"
## HiC_scaffold_22_29822340 "0/1" "1/1" "1/1"
## HiC_scaffold_22_30797357 "1/1" "0|1" "1/1"
## HiC_scaffold_22_32042610 "1|1" "1|1" "1|1"
## HiC_scaffold_23_11215327 "0/0" "0/0" "0/0"
## HiC_scaffold_23_27081333 "0/1" "1/1" "0/1"
## HiC_scaffold_23_28672255 "0/1" "0/0" "0/0"
## HiC_scaffold_23_29218828 "1/1" "0/0" "0/1"
## HiC_scaffold_23_32528768 "0/0" "0/0" "0/0"
## HiC_scaffold_23_32669383 "0/0" "0/0" "0/1"
## HiC_scaffold_23_33199663 "0/0" "0/0" "0/1"
## HiC_scaffold_23_33245843 "0/1" "1/1" "1/1"
## HiC_scaffold_23_40824545 "0|1" "1|1" "0/0"
## HiC_scaffold_23_41504669 "0/0" "0/0" "0/0"
## HiC_scaffold_24_16622654 "0/0" "1/1" "0/0"
## HiC_scaffold_24_16622681 "0/0" "1/1" "0/0"
## HiC_scaffold_24_19851560 "1|1" "1/1" "1/1"
## HiC_scaffold_24_20590563 "0/0" "1/1" NA
## HiC_scaffold_24_27745754 "0/1" "0/1" "1/1"
## HiC_scaffold_24_28763699 "1|1" "0|1" "0/0"
## HiC_scaffold_24_28763703 "1|1" "1/1" "0/0"
## HiC_scaffold_25_4135969 "0/0" NA "1/1"
## HiC_scaffold_25_4201677 "0/0" "0/0" "1/1"
## HiC_scaffold_25_5872831 "0/1" "1/1" "0/0"
## HiC_scaffold_25_6879627 "0/0" "1/1" "1/1"
## HiC_scaffold_25_8172813 "0/0" "0/0" "0/0"
## HiC_scaffold_25_9969507 "1|1" "1|1" "1|1"
## HiC_scaffold_25_10691336 NA "1|1" "0/1"
## HiC_scaffold_25_21286462 "0/0" "0/0" "1/1"
## HiC_scaffold_26_4086662 "0/0" "1|1" "0/0"
## HiC_scaffold_26_7539671 "0/1" "0/1" "0/0"
## HiC_scaffold_26_8348511 "1/1" "1/1" "1/1"
## HiC_scaffold_26_9043748 "1|1" "1|1" "1|1"
## HiC_scaffold_26_9045655 NA "0/0" "0/1"
## HiC_scaffold_26_11253181 NA "1|1" "0|1"
## HiC_scaffold_26_17828344 "1/1" "1/1" "1/1"
## HiC_scaffold_26_17932520 "1/1" "1/1" "1/1"
## HiC_scaffold_26_17941459 "0/0" "0/0" "0/0"
## HiC_scaffold_26_17960877 "1/1" "1/1" "1/1"
## HiC_scaffold_26_18284041 NA "0/1" "0/1"
## HiC_scaffold_26_18288701 "1|1" "0|1" "1|1"
## HiC_scaffold_26_18294422 "0/0" "0/0" "0/0"
## HiC_scaffold_26_21307365 "0/0" "1/1" "1/1"
## HiC_scaffold_26_22159924 "1/1" "0/0" "1/1"
## HiC_scaffold_26_22161535 "0/0" "1/1" "1/1"
## HiC_scaffold_26_24794176 NA "0/0" "0/0"
## HiC_scaffold_26_28538113 "0/0" "1|1" NA
## HiC_scaffold_26_29031357 "1/1" "1/1" "1/1"
## HiC_scaffold_26_29163462 NA "1/1" "0/1"
## HiC_scaffold_26_42631018 "0/0" "1|1" NA
## HiC_scaffold_26_42634814 "1/1" "0/0" "1/1"
## HiC_scaffold_26_43483190 "0/1" "0/0" "1/1"
## HiC_scaffold_26_49955889 "0/1" "1/1" "1/1"
## HiC_scaffold_26_58342510 "1|1" "0/0" "1|1"
## HiC_scaffold_27_1496120 "0/0" "0/0" "0/0"
## HiC_scaffold_27_1947057 "0/0" "1|1" "0/1"
## HiC_scaffold_27_2359058 "1|1" NA "1|1"
## HiC_scaffold_27_2699645 "0/1" "0/0" "0/1"
## HiC_scaffold_27_4425475 "1|1" NA "1|1"
## HiC_scaffold_27_7539469 "0/0" "0/0" "0/0"
## HiC_scaffold_27_7777122 "0/0" "1|1" "0/0"
## HiC_scaffold_27_16657070 "0/1" NA "1/1"
## HiC_scaffold_27_24539255 "0/0" "0|1" "0/1"
## HiC_scaffold_27_34642359 "1|1" "1|1" "0/0"
## HiC_scaffold_27_34647277 "0/0" "0/0" "0/0"
## HiC_scaffold_27_35380535 "1/1" NA "1/1"
## HiC_scaffold_27_35383230 "0/1" "1|1" "0/0"
## HiC_scaffold_28_21261390 "1|1" "0|1" "0|1"
## HiC_scaffold_28_24490442 "0/0" "1/1" "1/1"
## HiC_scaffold_28_25601927 NA "1/1" "0/0"
## HiC_scaffold_28_31793968 NA "1/1" "0/0"
## HiC_scaffold_28_32126687 "0/0" "0/0" "0/2"
## HiC_scaffold_28_34779518 "1/1" "0/0" "0/0"
## HiC_scaffold_28_36042491 "1/1" "0/1" "0/0"
## HiC_scaffold_28_36692361 "0/0" "0/0" "1/1"
## HiC_scaffold_28_38672993 "0/0" "0/0" "1|1"
## HiC_scaffold_28_39640526 "0/0" "0/0" "1/1"
## HiC_scaffold_28_40169242 "0/1" "0/0" "0/0"
## HiC_scaffold_28_41059640 "1|1" "1|1" "1|1"
## HiC_scaffold_28_42514830 "0/0" "1/1" NA
## HiC_scaffold_28_42601570 "0/0" "1/1" "1/1"
## HiC_scaffold_28_42601585 "0/1" NA "0/0"
## HiC_scaffold_28_43018803 NA "0/0" NA
## HiC_scaffold_28_43036165 NA NA "0/0"
## HiC_scaffold_29_344317 "0/0" "1/1" "0/0"
## HiC_scaffold_29_3811176 NA "0/0" "0/1"
## HiC_scaffold_29_6073993 "0/0" "0|1" "1|1"
## HiC_scaffold_29_6415222 "0/0" "1|1" "0/0"
## HiC_scaffold_29_8224424 "0/0" NA "0/1"
## HiC_scaffold_29_11153624 "0/1" "0/0" "0/0"
## HiC_scaffold_29_11153712 "1/1" "0/0" "0/1"
## HiC_scaffold_29_11167966 "1|1" "1/1" "0/1"
## HiC_scaffold_29_11491468 "0/1" "0/1" "0/0"
## HiC_scaffold_29_12103558 "0/0" "0/0" "1|1"
## HiC_scaffold_29_14279322 "0/1" NA "1/1"
## HiC_scaffold_29_14913907 "0/0" NA "0/1"
## HiC_scaffold_29_16378276 "1/1" NA "1/1"
## HiC_scaffold_29_20635937 "0/1" "0/0" "0/1"
## HiC_scaffold_29_20636787 "0/0" "0/0" "0/1"
## HiC_scaffold_29_22560215 "1/1" "1/1" "0/0"
## HiC_scaffold_29_22561144 NA "0/1" "1/1"
## HiC_scaffold_29_24017849 "1/1" "0/0" "0/0"
## HiC_scaffold_29_31603590 "0/0" "1/1" "0/0"
## HiC_scaffold_3_21670751 "1/1" "0/0" "0/0"
## HiC_scaffold_3_24747014 "0/1" "0/1" "0/0"
## HiC_scaffold_3_27861792 "0/1" "1/1" "0/0"
## HiC_scaffold_3_28057869 "0/1" NA "0/1"
## HiC_scaffold_3_28441436 NA NA "1/1"
## HiC_scaffold_3_28694380 NA "0/0" "0/0"
## HiC_scaffold_3_31361023 "1|1" NA "0/1"
## HiC_scaffold_3_31960572 "1|1" "0/1" "0/0"
## HiC_scaffold_3_32157169 "0/1" "0/0" "0/1"
## HiC_scaffold_3_32159152 "0/1" "0/1" "0/0"
## HiC_scaffold_3_34124237 "0/0" NA "0/0"
## HiC_scaffold_30_14199802 "0/0" "1/1" "1/1"
## HiC_scaffold_30_16052331 "1/1" NA "1/1"
## HiC_scaffold_30_19914075 "1/1" "1/1" "1/1"
## HiC_scaffold_30_20688783 "0/0" "0/1" "1/1"
## HiC_scaffold_30_21446076 "0|2" "0|1" "0/0"
## HiC_scaffold_30_21598563 NA NA "0/1"
## HiC_scaffold_30_22155728 NA "0/0" "0/0"
## HiC_scaffold_31_687411 "0/1" "1/1" "1/1"
## HiC_scaffold_31_3224722 "0/1" "0/0" "0/0"
## HiC_scaffold_31_3574854 "1/1" "0/1" "0/0"
## HiC_scaffold_31_5899551 "1|1" "1/1" "1|1"
## HiC_scaffold_31_5911491 "1|1" NA "0|1"
## HiC_scaffold_31_6297680 "1/1" "0/0" "1/1"
## HiC_scaffold_31_12394016 "0/0" "0/0" "1/1"
## HiC_scaffold_31_12394040 NA "1|1" "0/0"
## HiC_scaffold_31_18612650 "0/1" "1/1" "0/1"
## HiC_scaffold_32_4446859 "1/1" "0/1" "0/0"
## HiC_scaffold_32_5274796 "1/1" "0/0" NA
## HiC_scaffold_32_5275108 "0/0" NA "0/0"
## HiC_scaffold_32_5282358 "0/0" "1/1" "0/0"
## HiC_scaffold_32_5450203 "1|1" "0/0" NA
## HiC_scaffold_32_44200178 "0/0" "0/1" "1/1"
## HiC_scaffold_33_638523 "1/1" "1/1" "0/0"
## HiC_scaffold_33_44489563 "0/0" "0/0" "0/1"
## HiC_scaffold_33_44489988 "0/0" NA "0/0"
## HiC_scaffold_33_47080180 NA "0/0" "1/1"
## HiC_scaffold_33_47495907 "1/1" "0/0" "0/0"
## HiC_scaffold_33_51865876 "0/1" "0/1" "0/0"
## HiC_scaffold_34_1096982 "0/0" "1/1" "0/0"
## HiC_scaffold_34_6091943 "0|1" "1|1" "1|1"
## HiC_scaffold_34_6100160 "0|1" "1|1" "1|1"
## HiC_scaffold_34_24368584 "0/0" NA "0/0"
## HiC_scaffold_35_3233120 "0/1" "0/1" "0/1"
## HiC_scaffold_35_3253574 "1/1" "0/0" "0/1"
## HiC_scaffold_35_5512296 "1/1" "0/1" "0/0"
## HiC_scaffold_35_15114788 "1/1" NA "0/1"
## HiC_scaffold_35_21214090 "1/1" "0/0" "1/1"
## HiC_scaffold_35_21462564 "0/0" "0/0" "0/1"
## HiC_scaffold_35_22746783 "0/0" "0/1" "1/1"
## HiC_scaffold_35_22747085 "0/0" "1|1" "1|1"
## HiC_scaffold_35_23059580 "0/0" "1/1" "0/0"
## HiC_scaffold_35_23158882 NA "0/0" "1/1"
## HiC_scaffold_35_23261143 "1/1" NA "1/1"
## HiC_scaffold_35_24403602 "0/0" NA "1/1"
## HiC_scaffold_35_24403620 "1/1" NA "1/1"
## HiC_scaffold_35_24993986 "1/1" "0/1" "0/1"
## HiC_scaffold_35_24993998 "0/1" "0|1" "0/0"
## HiC_scaffold_36_1538038 "0/0" "0/1" "0/1"
## HiC_scaffold_36_2464728 "1/1" "0|1" "0|1"
## HiC_scaffold_36_5489050 "0/0" NA "1/1"
## HiC_scaffold_36_9673981 "0|1" "0/1" "0/1"
## HiC_scaffold_36_9674127 "1/1" "1/1" "1/1"
## HiC_scaffold_36_9674756 "1/1" "1/1" "1/1"
## HiC_scaffold_36_9676329 "0/1" NA "0/1"
## HiC_scaffold_36_12304516 "1/1" "0/0" "1/1"
## HiC_scaffold_36_12515555 "1|1" "0/0" "0|1"
## HiC_scaffold_36_13092647 "0/0" "0/1" "0/1"
## HiC_scaffold_36_13766994 "1/1" "1/1" "0/1"
## HiC_scaffold_36_14567741 "0/1" "0/1" NA
## HiC_scaffold_36_15530578 "1|1" NA "1|1"
## HiC_scaffold_37_679894 "1/1" "1/1" "1/1"
## HiC_scaffold_37_916693 "1/1" "1|1" NA
## HiC_scaffold_37_928146 "1/1" "0|1" "1/1"
## HiC_scaffold_37_1256768 "0/0" "0/0" "0/0"
## HiC_scaffold_37_1270034 "1/1" "0/1" "1/1"
## HiC_scaffold_37_1770997 "0/0" "0/0" "0/0"
## HiC_scaffold_37_1798298 "0/0" NA "0/0"
## HiC_scaffold_37_2010342 "0/0" "1|1" "0/0"
## HiC_scaffold_37_2141526 NA "1/1" "0/0"
## HiC_scaffold_37_3952190 "0/0" "0/0" "1|1"
## HiC_scaffold_37_3952215 "0/0" "0/0" "1|1"
## HiC_scaffold_37_9915037 "0/0" "1|1" "0/0"
## HiC_scaffold_38_5383430 "0/0" "1/1" "0/1"
## HiC_scaffold_38_5668363 "1/1" "1/1" "0/0"
## HiC_scaffold_38_5879849 "1|1" "1|1" "0/0"
## HiC_scaffold_38_5880155 "0/1" NA "1/1"
## HiC_scaffold_38_10612790 "1/1" "0/1" "0/1"
## HiC_scaffold_38_11940240 "1|1" "0/0" "0/0"
## HiC_scaffold_38_12878826 NA "0/0" NA
## HiC_scaffold_38_12959698 "0/0" "0/0" "1|1"
## HiC_scaffold_38_13087368 "1/1" "1/1" "1/1"
## HiC_scaffold_38_13480648 "0/0" "0/0" "1|1"
## HiC_scaffold_38_13965243 "1/1" "1/1" "0/0"
## HiC_scaffold_38_14089955 "0/0" NA "1/1"
## HiC_scaffold_38_14408072 "0/0" "0/1" "1|1"
## HiC_scaffold_38_14931216 "0/1" "0/0" "0/0"
## HiC_scaffold_38_14978356 "0/0" "0/0" "0/1"
## HiC_scaffold_38_14978367 "0/0" NA "0/0"
## HiC_scaffold_38_15292863 "0/1" "0/0" "0/1"
## HiC_scaffold_38_15306135 "0/0" "0/0" NA
## HiC_scaffold_38_16077506 "0/1" "1|1" "0/0"
## HiC_scaffold_38_16138965 NA "0/1" "0/1"
## HiC_scaffold_38_16226040 "1/1" "0/0" "1/1"
## HiC_scaffold_39_1393769 "0/0" "0/0" "1|1"
## HiC_scaffold_39_2014970 "0/1" "0/0" "0/0"
## HiC_scaffold_39_2014982 "0|1" "0/0" "0/0"
## HiC_scaffold_39_2014985 "0|1" "0/0" "0/0"
## HiC_scaffold_39_2426443 "0/0" "0/0" "0/1"
## HiC_scaffold_39_2485330 "1/1" "1|1" "1|1"
## HiC_scaffold_39_3350506 "0/0" "0/0" "1|1"
## HiC_scaffold_39_5897388 "0/0" "0/0" "0/0"
## HiC_scaffold_39_17631133 "0/1" "1/1" "0/1"
## HiC_scaffold_4_12107187 "0/0" "0/0" "0/0"
## HiC_scaffold_4_18241670 "1|1" "1|1" "1|1"
## HiC_scaffold_4_18241723 "1/1" "1/1" "1|1"
## HiC_scaffold_4_22418566 "1|1" "0/0" "0/0"
## HiC_scaffold_4_27899990 "0/1" NA "0/0"
## HiC_scaffold_4_35575118 NA "0/0" "0/1"
## HiC_scaffold_4_38000967 "1/1" "1/1" "1/1"
## HiC_scaffold_4_50654021 "1|1" NA "1|1"
## HiC_scaffold_40_2243415 NA "0/1" "0/0"
## HiC_scaffold_40_3000572 "1/1" "0/0" "0/1"
## HiC_scaffold_40_3014177 "1/1" NA "1/1"
## HiC_scaffold_40_3027900 "0/0" "0/0" "0/0"
## HiC_scaffold_40_3143834 "0/0" "0/1" "0/1"
## HiC_scaffold_40_3843942 "0/0" "1|2" "1/1"
## HiC_scaffold_40_3847620 "1|1" "0|1" "0/0"
## HiC_scaffold_40_3891007 "0/0" "1/1" "1/1"
## HiC_scaffold_40_3920667 NA "2/2" "0/0"
## HiC_scaffold_40_4177963 "1/1" "1/1" "0/0"
## HiC_scaffold_40_4819107 "0/0" NA "1/1"
## HiC_scaffold_40_4819834 "0|1" NA "0/0"
## HiC_scaffold_40_5788271 "1/1" "1/1" "0|1"
## HiC_scaffold_40_5965269 "1|1" "1/1" "1|1"
## HiC_scaffold_40_6204154 NA "0/0" "0/1"
## HiC_scaffold_40_8387917 "0/0" "0/0" "1/1"
## HiC_scaffold_41_3235384 "0/0" "0/0" "0/1"
## HiC_scaffold_41_3583000 "0/0" NA "1/1"
## HiC_scaffold_41_5334504 "1|1" "1/1" "1/1"
## HiC_scaffold_41_5387631 "0/0" NA "0/0"
## HiC_scaffold_41_6423426 NA NA "1/1"
## HiC_scaffold_41_14359947 NA "0/0" "1/1"
## HiC_scaffold_41_24007593 "0/0" "1|1" "1|1"
## HiC_scaffold_41_26225447 "0/0" "0/0" "0/0"
## HiC_scaffold_41_28626484 "1/1" NA "1/1"
## HiC_scaffold_41_28660620 "0/0" "0/0" "1|1"
## HiC_scaffold_41_31007688 "0/0" "1/1" "0/1"
## HiC_scaffold_42_1131084 "1/1" "0/0" "0/0"
## HiC_scaffold_42_1818523 "0/0" NA "1/1"
## HiC_scaffold_42_2165002 "0/0" NA "0/0"
## HiC_scaffold_42_2711332 "0/0" "0/1" "0/0"
## HiC_scaffold_42_6142699 "1/1" "1/1" "0/0"
## HiC_scaffold_42_6744976 "0/0" "0/0" "0/0"
## HiC_scaffold_42_8066919 "1|1" "0/0" "0/0"
## HiC_scaffold_42_8068292 "1|1" "0/0" NA
## HiC_scaffold_42_12487888 "0|1" "1|1" "0|1"
## HiC_scaffold_42_41366687 "1/1" "1/1" "1/1"
## HiC_scaffold_42_47313337 "0/0" "0/0" "0/0"
## HiC_scaffold_42_47313338 "0/0" "0/0" "0/0"
## HiC_scaffold_42_50784971 "1|1" "0/0" "0/0"
## HiC_scaffold_42_50784977 "1|1" "0/0" "0/0"
## HiC_scaffold_42_50784981 "0/0" NA "1/1"
## HiC_scaffold_42_51916989 "1/1" "1/1" "1/1"
## HiC_scaffold_43_3842003 "1/1" "1/1" "1/1"
## HiC_scaffold_43_14140861 "1|1" "1|1" "1|1"
## HiC_scaffold_43_15053605 "1/1" "1|1" "1/1"
## HiC_scaffold_43_17289945 "0/0" "0/0" "0|1"
## HiC_scaffold_43_29967704 "0/0" "1/1" "0/0"
## HiC_scaffold_43_35745831 NA "0/0" "1|1"
## HiC_scaffold_43_37627949 "0/1" "0|1" "0|1"
## HiC_scaffold_43_37628126 "0/1" "0/0" "0/0"
## HiC_scaffold_43_44017118 "0/0" "0/0" "0/1"
## HiC_scaffold_43_55124138 "0/0" "0/0" "0/1"
## HiC_scaffold_43_60107326 "0|1" "0|1" "0|1"
## HiC_scaffold_43_61359386 "0/1" "1/1" "0/0"
## HiC_scaffold_43_61702593 "1|1" "1|1" "0|1"
## HiC_scaffold_43_61702606 "1|1" "1|1" "0|1"
## HiC_scaffold_43_61702721 "0/0" "0/0" "1|1"
## HiC_scaffold_43_61702738 "1/1" "1/1" "0/0"
## HiC_scaffold_43_62511703 "0/0" "0/0" "1|1"
## HiC_scaffold_43_64069457 "0/0" "0/0" "0/1"
## HiC_scaffold_43_64577269 "1/1" "1/1" "1/1"
## HiC_scaffold_44_1920144 "0/0" "0/0" "1|1"
## HiC_scaffold_44_2148035 "0/1" "0/0" "0/1"
## HiC_scaffold_44_2568167 "1/1" "0/0" "0/0"
## HiC_scaffold_45_4180070 "1/1" "0/1" "1/1"
## HiC_scaffold_45_4797754 NA "0/2" "0/1"
## HiC_scaffold_45_5911123 "0/1" "1|1" "0/0"
## HiC_scaffold_45_6958990 "0/1" "1/1" "0/1"
## HiC_scaffold_45_8516216 "1|1" "1|1" "1|1"
## HiC_scaffold_45_10191213 NA "1/1" "1/1"
## HiC_scaffold_45_12005885 "0/0" "0/1" "0/1"
## HiC_scaffold_45_12006766 NA "0/1" "0/1"
## HiC_scaffold_45_24736172 "1/1" "0/1" "0/0"
## HiC_scaffold_45_24739830 "1|1" "0/1" "0/0"
## HiC_scaffold_46_9691567 "1|1" "0/0" "0/0"
## HiC_scaffold_46_17380257 "0/0" "0/0" "1/1"
## HiC_scaffold_46_18387147 NA "0/0" "0/0"
## HiC_scaffold_46_37092355 "1/1" "0/1" "1|1"
## HiC_scaffold_46_39183624 NA "1|1" "1/1"
## HiC_scaffold_46_39390547 NA "1/1" "1/1"
## HiC_scaffold_46_42964941 "1|1" "0/0" "0/0"
## HiC_scaffold_46_42986653 "1/1" "0/0" "0/0"
## HiC_scaffold_46_52074364 "1|1" "0/0" "0/0"
## HiC_scaffold_46_54255667 "1/1" "0/1" "1/1"
## HiC_scaffold_47_3750532 "0/0" "1|1" "1/1"
## HiC_scaffold_47_3751345 "1/1" "0/0" "0/0"
## HiC_scaffold_47_15400639 "1|1" "1|1" "1|1"
## HiC_scaffold_47_24072414 "1|1" "0/0" "1|1"
## HiC_scaffold_47_25273825 "0/0" NA "0/0"
## HiC_scaffold_48_8752752 "0/0" "0/0" "0/0"
## HiC_scaffold_48_10765920 "1/1" "0/0" "1/1"
## HiC_scaffold_48_16077918 "0/0" "0/1" "1|1"
## HiC_scaffold_48_16077940 "0/0" "1/1" "1|1"
## HiC_scaffold_48_16411609 "1/1" "1/1" "1/1"
## HiC_scaffold_48_19972580 "1/1" "0/0" "0/0"
## HiC_scaffold_48_23493079 "0/0" "0/0" "1|1"
## HiC_scaffold_48_23597210 "0/0" "0/0" "0/0"
## HiC_scaffold_48_24478493 "1/1" "0/0" "0/1"
## HiC_scaffold_48_24881148 NA "0/0" NA
## HiC_scaffold_48_25865723 "0/1" NA NA
## HiC_scaffold_48_25984068 "0/0" "0/0" "0/0"
## HiC_scaffold_48_25989079 "0|1" "1/1" "0/1"
## HiC_scaffold_48_30601375 "1|1" "0/0" "1|1"
## HiC_scaffold_48_31662115 "1/1" "1/1" "1/1"
## HiC_scaffold_48_41971562 "0/0" NA "0/1"
## HiC_scaffold_49_3392801 "1|1" NA "0|1"
## HiC_scaffold_49_6101692 NA "1/1" "0/1"
## HiC_scaffold_49_7996315 "0/0" "1/1" "0/1"
## HiC_scaffold_49_9470474 "1/1" "0|0" "0/0"
## HiC_scaffold_49_9886007 "0/1" "0/0" "0/0"
## HiC_scaffold_49_12592113 "1/1" "0/0" "0/0"
## HiC_scaffold_49_12741575 "0/0" "0/0" "1/1"
## HiC_scaffold_49_15135019 "1/1" "1/1" "0/1"
## HiC_scaffold_49_25906219 "0/0" "1|1" "0/0"
## HiC_scaffold_49_26614199 "1/1" NA "0/1"
## HiC_scaffold_49_26655554 "0/0" "0/1" "0/0"
## HiC_scaffold_49_37568341 "1/1" "0/0" "0/1"
## HiC_scaffold_49_37568353 "1/1" "0/0" "0/1"
## HiC_scaffold_49_40002255 "0/0" "0/0" "0/1"
## HiC_scaffold_49_40003229 "0/0" "0/0" "1|1"
## HiC_scaffold_49_42966376 "0/0" "0/0" "0/0"
## HiC_scaffold_5_801252 "0/1" "1/1" "0/1"
## HiC_scaffold_5_1446603 "0|1" "1|1" "1|1"
## HiC_scaffold_5_1446611 "0|1" "1|1" "1|1"
## HiC_scaffold_5_1530759 "1/1" "0/1" NA
## HiC_scaffold_5_1539275 "0/0" "0/0" "1|1"
## HiC_scaffold_5_1789576 "0/0" "1|1" "1|1"
## HiC_scaffold_5_1808197 "0/0" "1/1" "0/0"
## HiC_scaffold_5_1808204 "1/1" "0/0" NA
## HiC_scaffold_5_1943895 "1|1" "0/1" "1|1"
## HiC_scaffold_5_1944469 "1/1" "0/0" "1/1"
## HiC_scaffold_5_2857283 NA NA "0/0"
## HiC_scaffold_5_4061378 "0/0" "0|1" "1/1"
## HiC_scaffold_5_4340647 "1|1" "0/0" "1|1"
## HiC_scaffold_5_4435246 "1/1" "0/1" "1/1"
## HiC_scaffold_5_8868783 NA "0/0" "0/0"
## HiC_scaffold_50_4315969 NA "0/1" "0/1"
## HiC_scaffold_50_11652296 NA "1/1" "1/1"
## HiC_scaffold_50_11657309 NA NA "1/1"
## HiC_scaffold_50_15521027 "0/1" "0|1" "0/0"
## HiC_scaffold_50_21050962 "0/0" "0/0" "0/0"
## HiC_scaffold_50_23686202 NA "1|1" "1|1"
## HiC_scaffold_50_27393462 NA "1|1" "1|1"
## HiC_scaffold_50_42586883 NA "0/0" "0/1"
## HiC_scaffold_50_45087211 "0/0" NA "0/0"
## HiC_scaffold_50_49796550 "0/0" "1/1" "1/1"
## HiC_scaffold_50_54383367 "0/1" "0/0" "0|1"
## HiC_scaffold_50_63318678 "1/1" "1/1" NA
## HiC_scaffold_51_3521000 "1/1" "0/0" NA
## HiC_scaffold_51_4681905 "0/1" "1/1" "1/1"
## HiC_scaffold_51_6305599 "0/0" "1/1" "0/0"
## HiC_scaffold_51_8530818 "1|1" "0/0" "0|1"
## HiC_scaffold_51_11653312 "1/1" "0/0" "0/0"
## HiC_scaffold_51_13138547 "1/1" "1/1" "1/1"
## HiC_scaffold_51_14457091 "0/0" "0/0" "1|1"
## HiC_scaffold_51_15512668 "0/1" "0/0" "0/1"
## HiC_scaffold_51_17816346 "1/1" "0/0" "0/1"
## HiC_scaffold_51_19997934 "1|1" NA "1|1"
## HiC_scaffold_51_19997936 "1|1" NA "1|1"
## HiC_scaffold_51_20870773 "0/0" "0/0" "1/1"
## HiC_scaffold_51_26660104 "0/0" "0/0" "0/1"
## HiC_scaffold_51_40727521 "0/0" "1|1" NA
## HiC_scaffold_51_40892841 "1/1" "0/0" "0/0"
## HiC_scaffold_51_41717519 "1/1" "1/1" "0/0"
## HiC_scaffold_51_42547638 "0/1" "1/1" "1/1"
## HiC_scaffold_52_3335804 "0/1" "1/1" "1/1"
## HiC_scaffold_52_4149130 "0/1" "0/0" "1/1"
## HiC_scaffold_52_6893679 "1|1" "1|1" NA
## HiC_scaffold_52_13155416 "1/1" "0|1" "0/1"
## HiC_scaffold_52_13155437 "1|1" "0|1" "1|1"
## HiC_scaffold_52_13155442 "1|1" "0|1" "1|1"
## HiC_scaffold_52_14885688 "0/0" "0/0" "1/1"
## HiC_scaffold_52_14895078 "0/0" "1/1" "1/1"
## HiC_scaffold_52_15141791 "0/0" "1/1" NA
## HiC_scaffold_52_15743051 NA "0|1" "0/0"
## HiC_scaffold_52_15760201 NA "0/1" NA
## HiC_scaffold_52_15834589 "0/1" "0/0" "1/1"
## HiC_scaffold_52_15841769 "0/0" "0/0" "1/1"
## HiC_scaffold_52_15862421 "0/0" "1|1" "0|1"
## HiC_scaffold_52_15970970 "1/1" NA "1/1"
## HiC_scaffold_52_16275237 "1/1" "0/0" "0/0"
## HiC_scaffold_52_16275240 "0/0" NA "1|1"
## HiC_scaffold_52_16275290 NA "0/0" "0/1"
## HiC_scaffold_52_16524164 "0/0" "0/0" "0/0"
## HiC_scaffold_52_16524572 "0/1" NA "1/1"
## HiC_scaffold_52_16525647 NA NA "0/0"
## HiC_scaffold_52_16637047 "0/1" "0/1" "0/0"
## HiC_scaffold_52_17202127 "0/0" NA "0/0"
## HiC_scaffold_52_17207724 "0/1" NA "1/1"
## HiC_scaffold_52_17508820 NA "1|1" "1|1"
## HiC_scaffold_52_17547593 "1/1" "0/1" "0/1"
## HiC_scaffold_52_17551239 "1|1" "0/1" "0|1"
## HiC_scaffold_52_17560696 "1|1" "0/0" "1|1"
## HiC_scaffold_52_17560699 "1|1" "0/0" "1|1"
## HiC_scaffold_52_17741250 "0/1" "0/0" "0/0"
## HiC_scaffold_52_17742260 "0/0" NA "1|1"
## HiC_scaffold_52_18340578 "1/1" "0/0" "0/1"
## HiC_scaffold_52_18415911 "0/0" NA "0/0"
## HiC_scaffold_52_22189517 "1/1" NA "0/0"
## HiC_scaffold_52_22526592 "0/1" "0/1" "0/1"
## HiC_scaffold_52_26393471 "1/1" NA "0/0"
## HiC_scaffold_52_26799380 "0/0" "0/0" "0/0"
## HiC_scaffold_52_31871931 "1|1" "0/0" "1/1"
## HiC_scaffold_52_31874283 NA "1/1" "0/1"
## HiC_scaffold_52_31874287 "0/0" "0/0" "0/0"
## HiC_scaffold_52_32161053 "0|1" "1|1" "1|1"
## HiC_scaffold_52_33165557 "1/1" NA NA
## HiC_scaffold_52_33897620 "0/0" NA "1/1"
## HiC_scaffold_52_34763156 "0/1" "0/0" "0/1"
## HiC_scaffold_52_34763171 "0/1" "0/0" "0|1"
## HiC_scaffold_52_35174755 "0/0" "0/0" "0/0"
## HiC_scaffold_52_35608453 "0/0" NA "0/0"
## HiC_scaffold_52_35608470 "0/0" NA "0/0"
## HiC_scaffold_52_39464728 "0/0" "1|1" "0/0"
## HiC_scaffold_52_42141354 "0/1" "0/1" "1|1"
## HiC_scaffold_52_44675725 "1/1" "1/1" "0/1"
## HiC_scaffold_52_49935920 NA NA "0/1"
## HiC_scaffold_53_21789524 "0/0" "0/0" NA
## HiC_scaffold_53_25168042 NA "0/0" "0/1"
## HiC_scaffold_53_26398989 "0/0" "0|1" "0/0"
## HiC_scaffold_53_26398992 "0/0" "0|1" "0/0"
## HiC_scaffold_53_26398994 "0/0" "0|1" "0/0"
## HiC_scaffold_53_26549665 "0/0" "0|1" NA
## HiC_scaffold_53_29227676 "0|1" "0|1" "1|1"
## HiC_scaffold_53_31250349 "0/1" "1/1" NA
## HiC_scaffold_54_530581 NA "1|1" "1|1"
## HiC_scaffold_54_794095 NA "1|1" "0/0"
## HiC_scaffold_54_1171109 "0/0" "0/0" NA
## HiC_scaffold_54_1378956 "1/1" "0/0" "1/1"
## HiC_scaffold_54_1380539 "1/1" "1/1" "0/0"
## HiC_scaffold_54_3045015 NA "0/0" "1/1"
## HiC_scaffold_54_3185987 "0/0" "0/1" "1/1"
## HiC_scaffold_54_4401098 "1|1" "0/0" NA
## HiC_scaffold_54_5595903 "0/1" "0/1" "0/1"
## HiC_scaffold_54_5595921 "0/1" "0/0" "0|1"
## HiC_scaffold_54_5595928 "0|1" "0|1" "0|1"
## HiC_scaffold_54_5595949 "0/1" "0/1" "0/0"
## HiC_scaffold_54_6649662 "1/1" "0/0" "0/0"
## HiC_scaffold_54_8036734 "0/1" "0|1" "0|1"
## HiC_scaffold_54_9206614 "1/1" "1/1" "1/1"
## HiC_scaffold_54_35913192 "0/1" "0/0" "0/0"
## HiC_scaffold_54_35913282 "1|1" "0|1" NA
## HiC_scaffold_54_35913283 "1|1" "0|1" NA
## HiC_scaffold_55_1260491 "1/1" "1/1" "0/1"
## HiC_scaffold_55_3254027 "0/0" "0/0" "0/0"
## HiC_scaffold_55_3281985 "1/1" "1|1" "0|1"
## HiC_scaffold_55_5409544 "0/0" "0/0" "1/1"
## HiC_scaffold_55_5411094 "0|1" "1|1" "1|1"
## HiC_scaffold_55_5411115 "0|1" "1|1" "1/1"
## HiC_scaffold_55_18121799 "1/1" "1/1" "1/1"
## HiC_scaffold_55_19605809 NA "1/1" "0|1"
## HiC_scaffold_55_19605817 "0/0" "0/0" "0|1"
## HiC_scaffold_55_19605821 "1/1" "1/1" "0/0"
## HiC_scaffold_55_20195204 "0/1" "0/1" "0/0"
## HiC_scaffold_55_20886967 "0/0" "1/1" "0/0"
## HiC_scaffold_55_23222937 "0/1" "0/1" "0/0"
## HiC_scaffold_55_23626331 "1/1" "0/0" "0/0"
## HiC_scaffold_55_24539590 "0/0" NA "0/0"
## HiC_scaffold_55_24585939 "0/0" "0/0" "0/0"
## HiC_scaffold_55_34174151 "0/0" NA "1/1"
## HiC_scaffold_56_17874332 "0/0" "0/0" "1/1"
## HiC_scaffold_56_18635259 "0/0" "0|1" "1|1"
## HiC_scaffold_56_23654344 NA NA NA
## HiC_scaffold_56_35850533 "0/0" "1/1" "0/0"
## HiC_scaffold_56_35850539 "1/1" "0/0" "1/1"
## HiC_scaffold_56_40813556 "1/1" "0/0" "0/0"
## HiC_scaffold_56_53211633 "0/0" "0/0" "0/0"
## HiC_scaffold_56_60070829 NA "1/1" "1/1"
## HiC_scaffold_56_73286017 "0/1" "1/1" "0/1"
## HiC_scaffold_56_73829442 "0/0" NA "0/0"
## HiC_scaffold_56_73829443 "0/0" "0/0" "0/0"
## HiC_scaffold_56_76060304 "0/0" "0/0" "0/1"
## HiC_scaffold_57_25306408 "1/1" "0/0" NA
## HiC_scaffold_57_29222385 "1|1" "0|1" "0|1"
## HiC_scaffold_57_29592432 "0/0" "0/0" "1/1"
## HiC_scaffold_57_31472698 "0/0" "0/0" "0/0"
## HiC_scaffold_57_32371742 "0/0" "0/0" "0/0"
## HiC_scaffold_57_36495072 NA "1/1" NA
## HiC_scaffold_57_37286264 "1/1" "0|1" "1/1"
## HiC_scaffold_57_38537415 "0/0" "1|1" "1|1"
## HiC_scaffold_57_45438854 "0/0" "1|1" "0/0"
## HiC_scaffold_57_52856874 "1/1" "1/1" "0/1"
## HiC_scaffold_57_53575355 "1/1" "0/0" "1/1"
## HiC_scaffold_57_55856783 "1/1" NA NA
## HiC_scaffold_58_1362614 "1/1" "1/1" "1/1"
## HiC_scaffold_58_1432845 NA "1/1" "0/1"
## HiC_scaffold_58_1541720 "0/0" "0/0" "0/0"
## HiC_scaffold_58_2777120 "0/0" NA "1/1"
## HiC_scaffold_58_2973169 "0/1" "0/0" "1/1"
## HiC_scaffold_58_3243043 "0/0" "1/1" "0/0"
## HiC_scaffold_58_4035282 "1/1" "0/1" "0/0"
## HiC_scaffold_58_5442157 "0/1" "1|1" "0/1"
## HiC_scaffold_58_8004631 "0/1" "0/1" "0/0"
## HiC_scaffold_58_8058998 "0/0" "0/1" NA
## HiC_scaffold_58_8932837 "0/0" "1/1" "0/0"
## HiC_scaffold_58_14814944 "0/0" NA "0/0"
## HiC_scaffold_58_15639988 NA "0/0" NA
## HiC_scaffold_58_15707198 "1/1" "1/1" "1/1"
## HiC_scaffold_58_15707258 "1/1" NA "1/1"
## HiC_scaffold_58_15710623 "0/0" "0/1" "1/1"
## HiC_scaffold_58_19155063 "0/0" "1|1" "0/1"
## HiC_scaffold_58_20224050 "0/1" "0/1" NA
## HiC_scaffold_58_38475355 "1/1" NA "0/0"
## HiC_scaffold_59_3979055 NA "1/1" NA
## HiC_scaffold_59_5071810 "0/0" "1|1" "0/0"
## HiC_scaffold_59_5349936 "0/0" "1/1" NA
## HiC_scaffold_59_5350114 "1/1" "1/1" "0/1"
## HiC_scaffold_59_7738302 "0/0" "0/1" "0/1"
## HiC_scaffold_59_7738351 "0/0" "0/1" "0/1"
## HiC_scaffold_59_7958561 "0/1" "1|1" "0/0"
## HiC_scaffold_59_9273798 "0/0" "1/1" "0/0"
## HiC_scaffold_59_50928099 "0/0" "1/1" "0/0"
## HiC_scaffold_59_52960060 "0/0" "1|1" NA
## HiC_scaffold_6_10569023 "0/0" "0/0" "0/0"
## HiC_scaffold_6_10711445 "1/1" "0/0" "1/1"
## HiC_scaffold_6_13209200 "1|1" "1|1" NA
## HiC_scaffold_6_13213107 "1|1" NA "0/1"
## HiC_scaffold_6_13311684 "0/1" "0/0" "0/0"
## HiC_scaffold_6_15670783 "0/0" "0/0" "1|1"
## HiC_scaffold_6_19111232 "0/1" "0/0" "0/0"
## HiC_scaffold_6_32805498 "1/1" "1/1" NA
## HiC_scaffold_6_38793174 "0/1" "0/0" "1|1"
## HiC_scaffold_6_41092101 "0/0" NA "0/0"
## HiC_scaffold_6_41342933 "0/1" "1/1" "1/1"
## HiC_scaffold_6_47594508 "0/0" "0/1" "1/1"
## HiC_scaffold_60_70878 "1|1" "0|1" "0|1"
## HiC_scaffold_60_99549 "1|1" "0/1" "0/0"
## HiC_scaffold_60_201823 "0/0" NA "0/1"
## HiC_scaffold_60_712969 "0/1" NA "1|1"
## HiC_scaffold_60_744783 "0/0" "0/1" "0/0"
## HiC_scaffold_60_744788 "0/0" "1/1" "1/1"
## HiC_scaffold_60_22142128 NA "0/1" "0/1"
## HiC_scaffold_60_27599770 "1/1" "1/1" "1/1"
## HiC_scaffold_60_30608878 "0|1" "1|1" "1|1"
## HiC_scaffold_60_32657324 "0/1" NA "1/1"
## HiC_scaffold_60_32672580 "1/1" "1/1" "1/1"
## HiC_scaffold_60_38856893 "1/1" "0/0" "0/0"
## HiC_scaffold_60_39028335 "1/1" "1/1" "1/1"
## HiC_scaffold_60_40296869 "1/1" "0/1" NA
## HiC_scaffold_60_42775723 "0/0" "0/0" "0/1"
## HiC_scaffold_60_44687906 "0/1" NA "0/1"
## HiC_scaffold_60_44804601 "0/0" "0/0" "0/0"
## HiC_scaffold_60_53696867 "0/0" "0/0" "0|1"
## HiC_scaffold_60_53696868 "0/0" "0/0" "0|1"
## HiC_scaffold_60_60651515 "1|1" "0/0" "0|1"
## HiC_scaffold_60_70678462 "1/1" "1/1" "0/1"
## HiC_scaffold_61_2205328 NA "1/1" "1/1"
## HiC_scaffold_61_2491706 "1/1" "1/1" "1/1"
## HiC_scaffold_61_4009916 "2/2" "0/2" "0/0"
## HiC_scaffold_61_4062917 NA "0/0" "0/0"
## HiC_scaffold_61_4122763 "1|1" "1|1" "1|1"
## HiC_scaffold_61_4216461 "1/1" "0/0" "1/1"
## HiC_scaffold_61_4325053 "0/0" "0/0" "0/1"
## HiC_scaffold_61_9004838 "0/0" "1|1" "1|1"
## HiC_scaffold_61_14635083 "0/0" "0|1" NA
## HiC_scaffold_62_1128608 "1/1" NA "1/1"
## HiC_scaffold_62_11335200 "0/0" "0|0" "0/2"
## HiC_scaffold_62_18828476 "1/1" "0/0" "1/1"
## HiC_scaffold_62_21548870 "1|1" "1|1" "1|1"
## HiC_scaffold_62_23103274 "0/0" "0/1" "0/0"
## HiC_scaffold_62_25793456 NA "1/1" "1/1"
## HiC_scaffold_62_25887474 "0/0" "0/0" "0/0"
## HiC_scaffold_62_28516096 "0/0" "0|1" "1|1"
## HiC_scaffold_62_28516099 "0/0" "0|1" "1|1"
## HiC_scaffold_62_28818725 "1|1" NA NA
## HiC_scaffold_62_28818729 "0/0" NA NA
## HiC_scaffold_62_45207353 "0/1" "0/0" "1/1"
## HiC_scaffold_63_3092269 "1/1" NA "1/1"
## HiC_scaffold_63_3977940 "0/0" "1/1" "0/0"
## HiC_scaffold_63_4084937 "0/0" "0/0" "1/1"
## HiC_scaffold_63_4196326 "0/1" "0|1" "0|1"
## HiC_scaffold_63_6262453 "0/0" NA "0/0"
## HiC_scaffold_63_6350204 "1/1" "1/1" "0/1"
## HiC_scaffold_63_6458794 "0|1" "0/0" "0/0"
## HiC_scaffold_64_9162978 "0/1" "0/0" "0/0"
## HiC_scaffold_64_16876561 "0|1" "1|1" "0/0"
## HiC_scaffold_64_17543009 "0/0" "1/1" "0/1"
## HiC_scaffold_64_18925356 "0/0" "0/1" NA
## HiC_scaffold_64_19133050 NA "0/0" "1/1"
## HiC_scaffold_64_19627769 "0/0" "1|1" "1|1"
## HiC_scaffold_64_20477250 "0/0" "0/0" "0/0"
## HiC_scaffold_64_22816677 "1/1" NA "0/0"
## HiC_scaffold_64_22954654 NA "1|1" "1|1"
## HiC_scaffold_64_22954658 NA "1|1" "1|1"
## HiC_scaffold_64_22954682 NA "1/1" "1/1"
## HiC_scaffold_65_6829971 "1/1" NA "1/1"
## HiC_scaffold_65_8071102 "0/0" "1/1" "0/0"
## HiC_scaffold_65_9023979 "0/0" "1/1" "0/1"
## HiC_scaffold_65_9839671 "0/1" "1|1" "1/1"
## HiC_scaffold_65_10404778 "1|1" "0/0" "0|1"
## HiC_scaffold_65_11327791 "1/1" "1/1" "1/1"
## HiC_scaffold_65_11332104 "0/1" "0/1" "1/1"
## HiC_scaffold_65_34823822 NA "0/0" "1/1"
## HiC_scaffold_65_51418017 NA "1/1" "1/1"
## HiC_scaffold_65_54053979 NA "0/1" "1|1"
## HiC_scaffold_65_57110875 "1/1" "0/0" "1|1"
## HiC_scaffold_66_15615363 "0/0" NA "0/1"
## HiC_scaffold_66_15672090 "0/0" "0/0" "0/1"
## HiC_scaffold_66_17903445 "0/0" "0|1" "0/0"
## HiC_scaffold_66_18298629 "0|1" "0/0" "1|1"
## HiC_scaffold_66_19730676 "1|1" "1|1" "0/0"
## HiC_scaffold_66_23688768 "1/1" "0/1" "0/0"
## HiC_scaffold_66_26614535 "0/0" "0/1" "0|2"
## HiC_scaffold_66_27445665 "1/1" "0/1" "0/0"
## HiC_scaffold_66_29457165 "1|1" "1/1" "1|1"
## HiC_scaffold_66_29457180 "0/0" "1/1" "0/1"
## HiC_scaffold_66_30116287 "0/1" "1/1" "1/1"
## HiC_scaffold_66_31603503 "0/0" NA "0/0"
## HiC_scaffold_66_33261460 "0/0" "0/1" "0/1"
## HiC_scaffold_66_34138981 "0/0" "0/0" "1/1"
## HiC_scaffold_66_34139020 "1|1" "1/1" "0/0"
## HiC_scaffold_66_34142862 "1/1" "0/0" "0/1"
## HiC_scaffold_67_1404390 "0/0" NA "1|1"
## HiC_scaffold_67_28493665 NA "0/0" "1/1"
## HiC_scaffold_67_30243885 "1|1" "0/0" "1|1"
## HiC_scaffold_67_31511806 NA "0|1" "0/0"
## HiC_scaffold_67_34638092 "0/1" "0/0" NA
## HiC_scaffold_67_37534720 "0/0" "1/1" "1/1"
## HiC_scaffold_67_39679546 "0/0" "1/1" "1/1"
## HiC_scaffold_67_39854918 "0/0" "0/0" "0|1"
## HiC_scaffold_67_39860738 NA NA "0/0"
## HiC_scaffold_67_40331656 "1/1" "1/1" "0/0"
## HiC_scaffold_67_40824747 NA "1|1" "1|1"
## HiC_scaffold_68_3438132 "1|1" "1|1" "0|1"
## HiC_scaffold_68_3438133 "1|1" "1|1" "0|1"
## HiC_scaffold_68_11206902 "1/1" NA "0/1"
## HiC_scaffold_68_32770607 "1|1" "1|1" "0/0"
## HiC_scaffold_68_34016823 "0/0" "1/2" "1/2"
## HiC_scaffold_68_34020019 "1/1" "1/1" "0/1"
## HiC_scaffold_68_40296057 "0/0" "0/0" "0/0"
## HiC_scaffold_68_40296059 "0/0" "0/0" "0/0"
## HiC_scaffold_68_65001879 "1/1" "1/1" NA
## HiC_scaffold_69_23311147 "1/1" "0/0" "0/0"
## HiC_scaffold_69_27351303 "1/1" "0/0" "0/0"
## HiC_scaffold_69_29437208 "0/0" NA "1|1"
## HiC_scaffold_69_33699381 "1|1" "1|1" "1|1"
## HiC_scaffold_69_40194698 "1/1" "0/1" "1/1"
## HiC_scaffold_69_48273575 "1/1" "1/1" "1/1"
## HiC_scaffold_69_48348026 "0/0" "0/1" "0/0"
## HiC_scaffold_69_48348034 "0/0" "0/1" "0/0"
## HiC_scaffold_69_49563252 "1/1" "0/0" "0/0"
## HiC_scaffold_69_49593952 NA "1/1" "1/1"
## HiC_scaffold_69_49859037 "0/0" "0/0" "0/0"
## HiC_scaffold_69_51271238 NA "0/1" "0/0"
## HiC_scaffold_69_51529836 "1/1" "1/1" "0/0"
## HiC_scaffold_69_57313650 NA NA "1|1"
## HiC_scaffold_69_57359194 "0/0" "0/0" "1/1"
## HiC_scaffold_6951_523650 "1/1" "1/1" "0/0"
## HiC_scaffold_6951_897126 "0/1" "0/0" "0/1"
## HiC_scaffold_6951_1134482 "0/1" "1|1" "0/1"
## HiC_scaffold_6951_2484960 "1/1" "1/1" "0/0"
## HiC_scaffold_6951_3301273 "0/0" NA "0/1"
## HiC_scaffold_6951_3314609 "0/1" "0/0" "0/1"
## HiC_scaffold_6951_3945993 "0/0" "0/0" "0/0"
## HiC_scaffold_6958_218293 "0/0" "0/0" "0/0"
## HiC_scaffold_6958_449143 "0/1" "0/0" "1/1"
## HiC_scaffold_7_351023 NA NA "0/1"
## HiC_scaffold_7_488024 NA "0|1" "0/0"
## HiC_scaffold_7_492663 "0/0" "1/1" "1/1"
## HiC_scaffold_7_693567 "0|1" "0/0" "1|1"
## HiC_scaffold_7_2379128 NA NA "0/0"
## HiC_scaffold_7_3087721 "0/1" "0/1" "0/1"
## HiC_scaffold_7_3394880 "1/1" "0/0" "1/1"
## HiC_scaffold_7_22247106 NA "0/0" "1|1"
## HiC_scaffold_70_4632611 NA "0/0" "0/0"
## HiC_scaffold_70_14042778 "0/0" "0/1" "1/1"
## HiC_scaffold_71_410844 "0/0" NA "0|1"
## HiC_scaffold_71_1753451 "0/0" "0/1" "0/0"
## HiC_scaffold_71_2283682 "0|1" "0/0" "1|1"
## HiC_scaffold_71_3439685 "0/0" "0/0" "0/0"
## HiC_scaffold_71_17850462 "1|1" "1/1" "0/0"
## HiC_scaffold_71_20588314 "1|1" "0/1" "1|1"
## HiC_scaffold_71_25465351 "1|1" "0|1" "0/0"
## HiC_scaffold_71_25465352 "1|1" "0|1" "0/0"
## HiC_scaffold_71_26356062 "1/1" NA "0/0"
## HiC_scaffold_72_11785096 "1/1" "1/1" NA
## HiC_scaffold_72_17285854 "1/1" "1/1" "1/1"
## HiC_scaffold_72_23704999 "1/1" "0/0" "1/1"
## HiC_scaffold_72_24465318 "0|0" "0/0" "0/1"
## HiC_scaffold_72_30457277 "0/1" "0/0" "0/0"
## HiC_scaffold_72_32068649 "1/1" "1/1" "0/1"
## HiC_scaffold_72_35058295 "1/1" "1/1" "0/1"
## HiC_scaffold_72_36024997 "0/0" "0/0" "1|1"
## HiC_scaffold_72_37135067 "0|1" "0/0" "0/0"
## HiC_scaffold_72_38410141 NA "0/0" "1/1"
## HiC_scaffold_72_38448056 "0/0" "1|1" "0/0"
## HiC_scaffold_72_41412511 "0/0" "0/0" "1/1"
## HiC_scaffold_73_2192629 "1|1" "1|1" "0/0"
## HiC_scaffold_73_2920208 NA "0/1" "0/0"
## HiC_scaffold_73_4522493 "1/1" "1/1" "1/1"
## HiC_scaffold_73_4748625 "1/1" "0/0" "1|1"
## HiC_scaffold_73_5839336 "0/0" "0/0" "1/1"
## HiC_scaffold_73_9338582 NA "1/1" "0/1"
## HiC_scaffold_73_27393859 "0/1" "0/0" "0/0"
## HiC_scaffold_74_14235619 NA NA "0/0"
## HiC_scaffold_74_14515598 NA "1/1" "1/1"
## HiC_scaffold_74_15116121 "1|1" "1|1" "1|1"
## HiC_scaffold_74_17233613 "0|1" "1/1" "1/1"
## HiC_scaffold_74_17725340 "0|1" "1|1" "1/1"
## HiC_scaffold_74_18418135 NA "1|1" "1|1"
## HiC_scaffold_74_18418138 NA "1|1" "1|1"
## HiC_scaffold_74_21254425 "1/1" "1/1" "1/1"
## HiC_scaffold_74_22261065 "0/0" "0/1" "0/0"
## HiC_scaffold_74_47132519 "0/0" "1|1" "0/0"
## HiC_scaffold_74_50979096 "1/1" NA "1/1"
## HiC_scaffold_74_51060549 "1/1" "1/1" "1/1"
## HiC_scaffold_74_53256803 "1/1" "0/0" "1/1"
## HiC_scaffold_74_55464169 "1/1" "1/1" "0/0"
## HiC_scaffold_74_55515512 "0/1" "0/0" "1/1"
## HiC_scaffold_74_55999260 "0/0" "1|1" "0/0"
## HiC_scaffold_74_57404902 "0/1" "0/0" "0/1"
## HiC_scaffold_74_58181927 "1|1" NA "0/0"
## HiC_scaffold_74_58198600 "1/1" "0/1" "0/0"
## HiC_scaffold_74_63060195 "1/1" "1/1" "0/1"
## HiC_scaffold_75_5345466 "0/1" "0/0" "0/0"
## HiC_scaffold_75_5346522 "0/0" "1/1" "0/1"
## HiC_scaffold_75_5346535 "0/0" "1/1" "0/1"
## HiC_scaffold_75_9850973 NA "1/1" "1/1"
## HiC_scaffold_76_27149820 "0/1" "0/0" "1/1"
## HiC_scaffold_76_31582908 "1/1" "1/1" "1/1"
## HiC_scaffold_76_31792815 "0/0" "0/1" "0/1"
## HiC_scaffold_76_35352820 "0|1" "1|1" "0/0"
## HiC_scaffold_76_57782171 "0/1" "0/1" "0/1"
## HiC_scaffold_76_59862401 "1|1" "0/0" "0/0"
## HiC_scaffold_76_61095594 "0/0" "1|1" "1|1"
## HiC_scaffold_76_65496128 "0/0" "0/0" "0/0"
## HiC_scaffold_76_68965847 "0/0" "1/1" "1/1"
## HiC_scaffold_76_68966411 NA "1/1" "1/1"
## HiC_scaffold_76_69823482 "1/1" "0/0" "0|1"
## HiC_scaffold_76_73343841 NA "1/1" "1/1"
## HiC_scaffold_77_3598274 "0/0" "0/0" "0/0"
## HiC_scaffold_77_6982137 "0/0" "0/0" "1/1"
## HiC_scaffold_77_11021994 "1/1" "1/1" "0/0"
## HiC_scaffold_77_13608165 "1/1" "0/0" "0/1"
## HiC_scaffold_77_16888594 "1|1" "0/1" "0/0"
## HiC_scaffold_77_16888623 "0/0" "0/1" NA
## HiC_scaffold_77_16889448 "1/1" "1/1" "1/1"
## HiC_scaffold_77_39784685 "0/0" "1|1" "1|1"
## HiC_scaffold_77_44375866 "0/1" "0/0" "1/1"
## HiC_scaffold_77_45385370 "1/1" "0/0" "0/1"
## HiC_scaffold_78_5719919 "1/1" "1/1" "0/0"
## HiC_scaffold_78_11353297 "0/0" NA "1/1"
## HiC_scaffold_78_27316392 "1/1" "1/1" "1/1"
## HiC_scaffold_78_48124809 "0/0" "0/0" "1/1"
## HiC_scaffold_78_48124826 "0/1" "0/0" "1/1"
## HiC_scaffold_78_48126176 NA "1/1" "0/1"
## HiC_scaffold_78_48279096 "0/1" "0/1" "1/1"
## HiC_scaffold_78_48434558 "1|1" "1|1" "0/0"
## HiC_scaffold_78_49759181 "0|1" NA "0/1"
## HiC_scaffold_78_49759192 "1|1" NA "0|1"
## HiC_scaffold_78_49759215 "1/1" "0/0" "1/1"
## HiC_scaffold_78_51364025 NA NA "0/1"
## HiC_scaffold_78_55395445 "0/0" "1/1" "0/1"
## HiC_scaffold_78_59610866 "0/1" "1/1" "1/1"
## HiC_scaffold_78_62136661 "0/1" "1/1" "1/1"
## HiC_scaffold_79_1643780 NA "1/1" "1/1"
## HiC_scaffold_79_2519178 "1/1" "1/1" "1/1"
## HiC_scaffold_79_2858100 NA "0/0" "1/1"
## HiC_scaffold_79_3922454 "0/0" "1/1" "0/0"
## HiC_scaffold_79_4127878 "1|1" "0/0" "0/0"
## HiC_scaffold_79_4543693 "0/0" "0/0" "1/1"
## HiC_scaffold_79_11507678 "0/0" "1/1" NA
## HiC_scaffold_79_12618812 "1/1" NA "0/1"
## HiC_scaffold_79_14185404 "1|1" "0/0" "0/1"
## HiC_scaffold_79_17120237 "0/1" "1/1" "1/1"
## HiC_scaffold_79_17120254 "0/1" "1/1" "1/1"
## HiC_scaffold_79_35551507 "1|1" "0|1" "0/1"
## HiC_scaffold_79_35551543 "1/1" NA "0/1"
## HiC_scaffold_79_38927423 NA "1|1" "0/0"
## HiC_scaffold_79_42623307 "1|1" "1|1" "1|1"
## HiC_scaffold_79_43179786 "0/0" "1|1" "0/1"
## HiC_scaffold_79_43180099 "0/0" "1/1" "0/0"
## HiC_scaffold_79_43828078 "0|1" NA "1|1"
## HiC_scaffold_79_43872513 "0/0" "0/0" "0/0"
## HiC_scaffold_79_44627215 "1/1" "1/1" "1/1"
## HiC_scaffold_79_50772769 "0/0" "0/0" "0/1"
## HiC_scaffold_79_55468575 "0/1" "0/0" "0/1"
## HiC_scaffold_79_55816114 "0/1" "0/0" "1/1"
## HiC_scaffold_79_59915784 "1/1" "0/0" "1/1"
## HiC_scaffold_79_60165298 "0|1" "1|1" "0/1"
## HiC_scaffold_79_60165305 "0|1" "1|1" "0|1"
## HiC_scaffold_79_69145556 "1/1" "0/0" "0/0"
## HiC_scaffold_79_70208305 "0|1" "0|1" "1|1"
## HiC_scaffold_79_73412292 "0/0" "0/0" "0/1"
## HiC_scaffold_79_73416663 "1|1" "1|1" "0/0"
## HiC_scaffold_79_73416688 "0/0" "0/1" "0/0"
## HiC_scaffold_79_76863102 "0/0" "0/1" "0/1"
## HiC_scaffold_79_81279649 "0/0" "0|1" "0|1"
## HiC_scaffold_79_81499990 "1/1" "1/1" "1/1"
## HiC_scaffold_79_82319836 "0|1" "0/0" "0/0"
## HiC_scaffold_79_82319849 "0|1" "0/0" "0/0"
## HiC_scaffold_79_83163707 "0/0" "1/1" "1/1"
## HiC_scaffold_79_86283512 NA "0/0" "1/1"
## HiC_scaffold_79_87123758 "1|1" "1|1" "1|1"
## HiC_scaffold_79_88362889 "0/1" "0/0" NA
## HiC_scaffold_79_88599431 "1/1" "1/1" "0/0"
## HiC_scaffold_79_89322919 NA "0/1" "1/1"
## HiC_scaffold_79_89331918 NA "0/0" "1|1"
## HiC_scaffold_79_91340958 "0/0" "0/0" "0/0"
## HiC_scaffold_8_13649836 "0/1" "1|1" "1/1"
## HiC_scaffold_8_13650752 "1|1" "1|1" "1|1"
## HiC_scaffold_8_23818233 NA "0/1" "0/1"
## HiC_scaffold_8_24123972 NA "1|1" "0/0"
## HiC_scaffold_8_24230791 NA "1|1" "0/1"
## HiC_scaffold_8_24588423 "0/0" "0/0" "1/1"
## HiC_scaffold_8_25348483 "0/1" "1/1" "0/0"
## HiC_scaffold_8_25421933 "1|1" NA "0/0"
## HiC_scaffold_8_25772942 "0/0" NA "0/0"
## HiC_scaffold_8_26289589 "1|1" "1|1" "0/0"
## HiC_scaffold_8_27602740 "0/0" "0/1" "0/1"
## HiC_scaffold_8_28159063 "1/1" "0/0" "1/1"
## HiC_scaffold_8_30829320 "0/0" NA "0|1"
## HiC_scaffold_8_31044084 "0/0" "0/0" "0/0"
## HiC_scaffold_8_31415507 "0|2" "1|1" "0/0"
## HiC_scaffold_8_32594682 "0/0" "1|1" "1|1"
## HiC_scaffold_80_3617847 "0/1" "1/1" "1/1"
## HiC_scaffold_80_5758183 "1|1" "0/0" "0/0"
## HiC_scaffold_80_6760006 "0|1" "0/0" "1|1"
## HiC_scaffold_80_6760037 "0/1" "0/0" "1/1"
## HiC_scaffold_80_7772622 NA "1/1" "0/1"
## HiC_scaffold_80_7919533 "0/0" "1/1" "0/1"
## HiC_scaffold_80_8110052 NA "1|1" "0/1"
## HiC_scaffold_80_8193366 NA NA "1/1"
## HiC_scaffold_80_8625784 "1/1" "1/1" "1/1"
## HiC_scaffold_80_8912846 "0/0" "1/1" "1/1"
## HiC_scaffold_80_9544102 "0/0" NA "0/0"
## HiC_scaffold_80_10770701 NA "0/0" "0/0"
## HiC_scaffold_80_11590146 NA NA "0/0"
## HiC_scaffold_80_16953653 "0/0" NA "0/0"
## HiC_scaffold_80_18938832 "1|1" "1|1" "1|1"
## HiC_scaffold_80_19015946 "1/1" "1/1" NA
## HiC_scaffold_80_19404001 "0/1" "0/0" "1/1"
## HiC_scaffold_80_25346708 "1|1" "0/1" "0/0"
## HiC_scaffold_80_37479851 "0/0" "0/0" "1/1"
## HiC_scaffold_80_37507516 "1/1" NA "0/1"
## HiC_scaffold_81_1187192 NA "0/1" "1/1"
## HiC_scaffold_81_2689826 "1|1" "1|1" "0/0"
## HiC_scaffold_81_2690751 "0/0" "0/0" "1|1"
## HiC_scaffold_81_6614123 "0/1" NA "0/1"
## HiC_scaffold_81_7836855 "0/1" "0|1" "1/1"
## HiC_scaffold_81_10334868 "1/1" "1|1" "1|1"
## HiC_scaffold_81_10458752 "1/1" "1/1" "0/0"
## HiC_scaffold_81_17515538 "1|1" "1/1" "0/1"
## HiC_scaffold_81_40271282 "0/0" "1/1" "1/1"
## HiC_scaffold_81_40271294 "1/1" "0/0" "0/0"
## HiC_scaffold_81_41096427 "0|1" "0/0" "0/0"
## HiC_scaffold_81_41096444 "0|1" "0/0" "0/0"
## HiC_scaffold_81_43820595 "0/0" "1/1" "0/0"
## HiC_scaffold_81_43820732 "0/0" "0/0" "0/0"
## HiC_scaffold_81_43854278 "0/1" "0/0" "0/1"
## HiC_scaffold_81_44804862 "1/1" "1/1" "1/1"
## HiC_scaffold_81_45063428 "0/0" "0/0" "0/0"
## HiC_scaffold_81_45950590 "1/1" "0/0" NA
## HiC_scaffold_81_46714752 "1|1" NA "0|1"
## HiC_scaffold_81_46714759 "1|1" "0/0" "0|1"
## HiC_scaffold_81_47170397 NA "1|1" "0/0"
## HiC_scaffold_81_47628201 "1|1" "1|1" "0/0"
## HiC_scaffold_81_48105216 "0/1" "1|1" "1|1"
## HiC_scaffold_81_48932070 "0/0" "0/0" "1/1"
## HiC_scaffold_81_54050146 NA "1/1" "1/1"
## HiC_scaffold_82_5672063 "1/1" NA "1/1"
## HiC_scaffold_82_8796823 "0/1" "1|1" NA
## HiC_scaffold_82_13450959 NA "0/1" "0/0"
## HiC_scaffold_82_26144442 "1/1" "0/0" NA
## HiC_scaffold_82_26147011 "1|1" "1|1" "0/1"
## HiC_scaffold_82_28907834 "1/1" "1/1" "0/0"
## HiC_scaffold_82_34413793 "0/1" "1|1" "0/1"
## HiC_scaffold_82_34413800 "0/1" "1|1" "0/1"
## HiC_scaffold_82_36173035 "1/1" "0/0" "0/0"
## HiC_scaffold_82_40539273 "1/1" "0/0" "1/1"
## HiC_scaffold_82_41470256 "1/1" "0/0" "1/1"
## HiC_scaffold_83_23993605 "1/1" NA "0/1"
## HiC_scaffold_83_35035961 "0|1" "0|1" "0/1"
## HiC_scaffold_83_43423618 "0/0" "0/1" "0/0"
## HiC_scaffold_83_46920654 "1/1" "1/1" "1/1"
## HiC_scaffold_83_46934197 "1|1" "1/1" "1|1"
## HiC_scaffold_84_356301 "0/0" "0/0" "1|1"
## HiC_scaffold_84_5761817 "1/1" "0/0" "0/1"
## HiC_scaffold_84_5769022 "0/0" NA "0/0"
## HiC_scaffold_84_6288130 "1|1" "0/0" "0/1"
## HiC_scaffold_84_6288141 "1|1" NA "1/1"
## HiC_scaffold_84_6288147 NA NA "0/0"
## HiC_scaffold_84_7069238 "1|1" "0/0" "1|1"
## HiC_scaffold_84_9131309 "1/1" NA "0/0"
## HiC_scaffold_84_10148442 "0/0" "0/0" "0/0"
## HiC_scaffold_84_14659391 "1/1" "1/1" "1/1"
## HiC_scaffold_84_16302752 "1/1" "1/1" "2|2"
## HiC_scaffold_84_18463244 "1/1" "1/1" NA
## HiC_scaffold_84_22909575 "1|1" "1|1" "0/0"
## HiC_scaffold_84_29275266 "0/1" "0/0" "0/1"
## HiC_scaffold_84_31184610 "1/1" "1/1" "0/1"
## HiC_scaffold_84_33093169 "0/0" "0/0" "1|1"
## HiC_scaffold_84_37675180 "1/1" "1/1" "0/1"
## HiC_scaffold_84_39501814 "0/1" "1|1" "0/0"
## HiC_scaffold_84_50169438 "0/0" "1/1" NA
## HiC_scaffold_84_50169445 "0/0" "1/1" "0/0"
## HiC_scaffold_84_51231025 "1/1" "0/0" "0/1"
## HiC_scaffold_85_9792207 NA NA "0|1"
## HiC_scaffold_85_11784233 "0/0" "0/0" "1|1"
## HiC_scaffold_85_11911022 "1|1" "1|1" "1|1"
## HiC_scaffold_85_11911142 "0/0" "0/0" "0/1"
## HiC_scaffold_85_11913828 NA "1/1" "0|1"
## HiC_scaffold_85_11913831 NA "0/0" NA
## HiC_scaffold_85_12353081 "1/1" "0/0" "0/0"
## HiC_scaffold_85_12414551 "0/0" "0/1" "0/0"
## HiC_scaffold_85_13043967 "0|1" "0/0" "0/0"
## HiC_scaffold_85_13221888 "1/1" "1/1" "1/1"
## HiC_scaffold_85_27008863 "0/1" "0/0" "0/1"
## HiC_scaffold_85_28992264 "0/1" "0|1" "0|1"
## HiC_scaffold_85_28992268 "1/1" "1|1" "0|1"
## HiC_scaffold_85_64310850 "0/0" "1|1" "0/0"
## HiC_scaffold_85_65135112 "0/0" "0/0" "0/0"
## HiC_scaffold_85_65563529 NA "0/1" "1/1"
## HiC_scaffold_86_1949664 "1|1" "0/0" "1|1"
## HiC_scaffold_86_5340423 "0/1" "0/0" "0/1"
## HiC_scaffold_86_5483991 "0/1" "0/0" "1|1"
## HiC_scaffold_86_8928469 "0/0" "0/0" "1/1"
## HiC_scaffold_86_23727924 "0/0" "1|1" "0/0"
## HiC_scaffold_86_24825818 "1|1" "1|1" "1|1"
## HiC_scaffold_86_25333718 "1/1" "0/0" "1/1"
## HiC_scaffold_86_29668168 "0|1" "0/0" NA
## HiC_scaffold_86_30914243 "0/0" "1|1" "0/0"
## HiC_scaffold_86_32040320 "0|1" "0|1" "0|1"
## HiC_scaffold_86_32040329 "0|1" "0|1" "0|1"
## HiC_scaffold_86_32125061 "0/0" NA "0/1"
## HiC_scaffold_86_32144758 "1/1" "0/0" "0/0"
## HiC_scaffold_86_32153692 NA "0/1" NA
## HiC_scaffold_86_32534129 "0/0" "1/1" "0/0"
## HiC_scaffold_86_32605768 "1|1" "0/0" NA
## HiC_scaffold_86_36355399 "0/1" "0/0" "1/1"
## HiC_scaffold_86_36357265 "1/1" "0/0" "0/1"
## HiC_scaffold_87_1253643 NA "0/0" "0/1"
## HiC_scaffold_87_2137958 "0/0" "0/0" "0/0"
## HiC_scaffold_87_3980100 "1/1" "1/1" "1/1"
## HiC_scaffold_87_4395923 NA "0/0" "0/0"
## HiC_scaffold_87_5489328 "1|1" NA "1|1"
## HiC_scaffold_87_6300441 "0/1" "1/1" "0/1"
## HiC_scaffold_87_16306904 NA "1/1" "1/1"
## HiC_scaffold_87_44780945 "0/0" "1|1" NA
## HiC_scaffold_88_5584327 "0/1" NA "0|1"
## HiC_scaffold_88_7104630 "0/0" NA "1|1"
## HiC_scaffold_88_7104631 "0/0" NA "1|1"
## HiC_scaffold_88_7104638 "1|1" NA "0/0"
## HiC_scaffold_88_7104639 "0/1" NA "1|1"
## HiC_scaffold_88_7104640 "1|1" NA "1|1"
## HiC_scaffold_88_7479340 "0/0" "0/0" "0/0"
## HiC_scaffold_88_8773607 NA "1|1" "1|1"
## HiC_scaffold_88_9883678 "1|1" "0/0" "1|1"
## HiC_scaffold_88_10878718 "0/0" "0/0" "1/1"
## HiC_scaffold_88_19365116 "0/0" "0/1" "1/1"
## HiC_scaffold_88_20477349 NA NA "0/0"
## HiC_scaffold_88_20557885 "0/1" "0/1" "0/1"
## HiC_scaffold_89_675045 "0/1" "0/0" "0/0"
## HiC_scaffold_89_2815845 "0|2" "0/2" "0/0"
## HiC_scaffold_89_2843940 "0/0" "0/1" "0/0"
## HiC_scaffold_89_3018830 "1/1" "1/1" "0/1"
## HiC_scaffold_89_13745506 NA NA "0/1"
## HiC_scaffold_89_30006907 "1/1" "0/1" NA
## HiC_scaffold_89_36509388 NA NA "0/0"
## HiC_scaffold_89_38703735 "0/0" "0/0" "1/1"
## HiC_scaffold_89_38764895 "1/1" "1/1" "1/1"
## HiC_scaffold_89_42052609 NA "0/0" "1/1"
## HiC_scaffold_89_42054991 "0/0" "0/0" "0/0"
## HiC_scaffold_89_44306958 "0/1" "0/1" NA
## HiC_scaffold_89_44338206 "0/0" NA "1/1"
## HiC_scaffold_89_45298973 "1/1" "0/0" "1/1"
## HiC_scaffold_9_3529921 "0/0" "1/1" "1/1"
## HiC_scaffold_9_5660454 "1|1" "1|1" "0|1"
## HiC_scaffold_9_5660461 "1|1" "1|1" "1|1"
## HiC_scaffold_9_5854070 "0/1" "1/1" "1/1"
## HiC_scaffold_9_6142415 "0|1" "0|1" "0/0"
## HiC_scaffold_9_6142436 "0|1" "0|1" "0/0"
## HiC_scaffold_9_6143781 "0/1" "0/1" "0/0"
## HiC_scaffold_9_6654825 "1/1" NA "0/0"
## HiC_scaffold_9_7094545 "1/1" "1|1" "1|1"
## HiC_scaffold_9_7100208 "1|1" "1|1" "0/0"
## HiC_scaffold_9_7109988 "0/0" "0/0" "1/1"
## HiC_scaffold_9_7111922 "0/0" "0/0" "1|1"
## HiC_scaffold_9_8235781 "0/1" "1/1" NA
## HiC_scaffold_9_8279558 "1/1" "0/0" "1/1"
## HiC_scaffold_9_15679481 "1|1" "1|1" "0/0"
## HiC_scaffold_9_18082611 "0/0" "1|1" "0|1"
## HiC_scaffold_9_18090830 "1/1" "0/0" "0/0"
## HiC_scaffold_9_30240531 "0/0" "1/1" "1/1"
## HiC_scaffold_90_10418696 "0/0" "1/1" "0/0"
## HiC_scaffold_90_11470224 "0/0" NA "1/1"
## HiC_scaffold_90_13593319 "0/0" "1/1" NA
## HiC_scaffold_90_16260161 "0/0" "1|1" "1|1"
## HiC_scaffold_90_22325499 "1/1" "1/1" "0/0"
## HiC_scaffold_90_23574204 "0/0" NA "0/0"
## HiC_scaffold_90_23609908 "1|1" "0/0" "0/1"
## HiC_scaffold_90_23623078 "1|1" NA "1|1"
## HiC_scaffold_90_23626883 "0/0" "1/1" "0/0"
## HiC_scaffold_90_23812663 "1/1" "1/1" "1/1"
## HiC_scaffold_90_25939283 "1/1" "0/0" NA
## HiC_scaffold_90_25985714 "0/0" "1/1" "0/1"
## HiC_scaffold_90_30751272 "0/0" "0/1" "0/1"
## HiC_scaffold_90_31232025 NA NA NA
## HiC_scaffold_90_31245699 "0/1" "1/1" "1/1"
## HiC_scaffold_90_31527975 "0/0" "0/0" "1/1"
## HiC_scaffold_90_31546172 "0/1" "1|1" "0/1"
## HiC_scaffold_90_38511996 "0|1" "0/0" "0|1"
## HiC_scaffold_90_38511999 "1|1" "1|1" "0|1"
## HiC_scaffold_90_38517279 "1/1" "1/1" "0/0"
## HiC_scaffold_90_40624104 "1/1" "0/1" "0/0"
## HiC_scaffold_91_5644765 "0/0" "0/0" NA
## HiC_scaffold_91_5867214 "0/0" "1|1" "0|1"
## HiC_scaffold_91_5867226 "0/0" "1|1" "0|1"
## HiC_scaffold_91_7704263 NA NA "0/0"
## HiC_scaffold_91_7871360 "1/1" "0/0" "1/1"
## HiC_scaffold_91_8538014 "1/1" "0/1" NA
## HiC_scaffold_91_13230485 "1|1" "1|1" "0/0"
## HiC_scaffold_91_28696118 "0/0" NA "0/0"
## HiC_scaffold_91_28696625 "1|1" "0/0" "0/0"
## HiC_scaffold_91_42177482 "0/1" "0/1" NA
## HiC_scaffold_91_46813640 "0/0" "0/1" "0/1"
## HiC_scaffold_92_23783035 "0/0" "0/1" "0/0"
## HiC_scaffold_92_23783036 "0/0" "0/1" "0/0"
## HiC_scaffold_92_24712793 "0/0" "0/0" "0/0"
## HiC_scaffold_92_28698258 "0/0" "1/1" "0|1"
## HiC_scaffold_92_40691582 NA "0/0" "0/0"
## HiC_scaffold_92_43967712 "1/1" "1/1" "0/0"
## HiC_scaffold_92_47147572 "0/0" NA "0|1"
## HiC_scaffold_92_49042714 "0|1" "1|1" "1|1"
## HiC_scaffold_92_49042715 "0|1" "1|1" "1|1"
## HiC_scaffold_92_53634002 "1/1" "0/0" "1/1"
## HiC_scaffold_92_58211868 "1|1" "0/0" "1|1"
## HiC_scaffold_92_60114155 "0/0" "0/1" "1|1"
## HiC_scaffold_92_63603483 "1|1" "1/1" "0/0"
## HiC_scaffold_92_64797225 "0/0" "0/0" "1/1"
## HiC_scaffold_92_68367476 "0/0" "1|1" "0/0"
## HiC_scaffold_93_1912167 NA "0/0" "1/1"
## HiC_scaffold_93_2485978 "1/1" NA "0/0"
## HiC_scaffold_93_3227638 "1/1" "1/1" "0/0"
## HiC_scaffold_93_3227641 "0/0" "0/0" NA
## HiC_scaffold_93_13971208 NA "1/1" "0/0"
## HiC_scaffold_93_13987080 "0/1" "0/0" "1/1"
## HiC_scaffold_93_21125468 "1/1" "0/0" "0/0"
## HiC_scaffold_93_21845293 NA "0/1" NA
## HiC_scaffold_93_21845310 NA "0/0" NA
## HiC_scaffold_93_21846342 "0/0" "0/0" "1|1"
## HiC_scaffold_93_21846356 "0/1" "0/0" "1|1"
## HiC_scaffold_93_22589723 "1/1" NA "0/0"
## HiC_scaffold_93_22619278 "1/1" NA "0/0"
## HiC_scaffold_93_22631258 "1|1" "1|1" "0|1"
## HiC_scaffold_93_22631266 "1|1" "1|1" "0|1"
## HiC_scaffold_94_3110102 "1/1" "0/0" "0/0"
## HiC_scaffold_94_3205919 "1/1" "1/1" "0/1"
## HiC_scaffold_94_9023846 "0/1" "0/0" "0/1"
## HiC_scaffold_94_11572820 NA "1/1" "0/0"
## HiC_scaffold_94_12368532 "0/0" "0/1" "0/0"
## HiC_scaffold_94_42179418 "1/1" "0/0" NA
## HiC_scaffold_94_42179519 "0/0" "1/1" NA
## HiC_scaffold_94_51646206 NA "0/1" "0/0"
## HiC_scaffold_94_52781289 NA "0/1" "1/1"
## HiC_scaffold_94_53790035 "0/1" "1/1" "0/1"
## HiC_scaffold_94_53792738 NA "1/1" "0/1"
## HiC_scaffold_94_56768905 "1|1" NA "0|1"
## HiC_scaffold_946_81276 "0/1" "0/1" "0/1"
## HiC_scaffold_95_3189690 NA "0/0" "0/0"
## HiC_scaffold_95_4397298 "0/0" "1|1" "1|1"
## HiC_scaffold_95_9469157 "0/0" NA "1|1"
## HiC_scaffold_95_10641411 "0/0" "1/1" "1/1"
## HiC_scaffold_95_10949821 "1/1" NA "1/1"
## HiC_scaffold_95_12993394 "0|1" "1|1" "1|1"
## HiC_scaffold_95_15515793 NA "0/0" "0|1"
## HiC_scaffold_95_15608785 "1|1" "0/0" "0/0"
## HiC_scaffold_95_15609137 "1/1" "0/0" "0/0"
## HiC_scaffold_95_16295316 "0/0" "0/0" "0/0"
## HiC_scaffold_95_22656165 "0|0" "0/0" "0/0"
## HiC_scaffold_95_25885727 "0/1" "0/0" "0/1"
## HiC_scaffold_96_10460019 "0/0" "0/0" "0/0"
## HiC_scaffold_96_27155785 "0/1" NA "1/1"
## HiC_scaffold_96_37939434 "0/0" "0|1" "1/1"
## HiC_scaffold_96_51115048 "1/1" "0/0" "0/1"
## HiC_scaffold_96_51116511 "0/1" "1/1" "1/1"
## HiC_scaffold_96_51915040 "0/1" "1|1" "0/0"
## HiC_scaffold_96_52681287 "1/1" "0/0" "0/0"
## HiC_scaffold_96_53276519 "0/0" "0/0" "0/1"
## HiC_scaffold_97_1736926 "0|1" "0/0" "1|1"
## HiC_scaffold_97_1736994 "0/1" "0/0" "1|1"
## HiC_scaffold_97_3863543 "1/1" "1/1" NA
## HiC_scaffold_97_4200445 "0/0" "1/1" "0/0"
## HiC_scaffold_97_4799162 "0/1" "0/0" "0/0"
## HiC_scaffold_97_5027892 "1/1" NA "0/0"
## HiC_scaffold_97_8007933 "0/0" "0/0" "1|1"
## HiC_scaffold_97_17997210 "0/0" "1|1" "0/0"
## HiC_scaffold_97_18604647 "1/1" "1/1" "1/1"
## HiC_scaffold_97_20239636 "1/1" NA "0/0"
## HiC_scaffold_98_15154096 "0|1" "0/0" "0/0"
## HiC_scaffold_98_22342667 "1/1" "0/1" "0/1"
## HiC_scaffold_98_22634293 "0/0" "1|1" "1|1"
## HiC_scaffold_98_22634294 "0/0" "1|1" "1|1"
## HiC_scaffold_98_22721138 "1/1" NA "1/1"
## HiC_scaffold_98_22869378 "1/1" NA "0/1"
## HiC_scaffold_98_24108405 "0/0" "0|1" "0/0"
## HiC_scaffold_98_27359592 NA NA "1|1"
## HiC_scaffold_98_28549834 "0/0" "0/0" "1/1"
## HiC_scaffold_98_28867520 NA NA "0|1"
## HiC_scaffold_98_28867524 NA NA "0|1"
## HiC_scaffold_98_29431717 "1|1" "0|1" NA
## HiC_scaffold_98_29675109 "0/1" NA "0/0"
## HiC_scaffold_99_1163244 "0/0" NA "0/0"
## HiC_scaffold_99_1451611 "1/1" "0/0" "0/0"
## HiC_scaffold_99_2021961 "0/0" "0/0" "0/0"
## HiC_scaffold_99_5134392 "0/0" "0/1" "0/0"
## HiC_scaffold_99_5239109 "1/1" "1/1" "0/0"
## HiC_scaffold_99_6917738 "0/0" "0/0" "1|1"
## HiC_scaffold_99_11221970 "1|1" NA "0|1"
## HiC_scaffold_99_25982503 "1/1" "0/1" "0/1"
## Tank_13_Crab_1 Tank_13_Crab_2 Tank_13_Crab_3
## HiC_scaffold_1_2523394 "0/0" "0/1" "0/1"
## HiC_scaffold_1_2542157 "0/0" "1/1" "0/0"
## HiC_scaffold_1_2647806 "0/0" "1/1" "1/1"
## HiC_scaffold_1_2970226 NA "1|1" "0/0"
## HiC_scaffold_1_3329447 "0/0" "0/0" NA
## HiC_scaffold_1_3795100 "1|1" "1|1" "1|1"
## HiC_scaffold_10_2221345 NA "1/1" "0|1"
## HiC_scaffold_10_2299490 NA NA "0/0"
## HiC_scaffold_10_2565301 "1/1" "1/1" "1/1"
## HiC_scaffold_10_3864355 "1/1" "1/1" "1/1"
## HiC_scaffold_10_4319900 "0/0" "0/0" "0/0"
## HiC_scaffold_10_4319907 "0/0" "0/0" "0/0"
## HiC_scaffold_10_5404579 "0/1" "0/0" "0/0"
## HiC_scaffold_10_5843373 "0/1" "1/1" "0/1"
## HiC_scaffold_100_854947 "1|1" "1|1" "1|1"
## HiC_scaffold_100_1070817 "0/1" "1/1" "1/1"
## HiC_scaffold_100_2002094 "0|1" "0|1" "1|1"
## HiC_scaffold_100_2002097 "0|1" "0|1" "1|1"
## HiC_scaffold_100_2010331 "0/1" "0/0" "1|1"
## HiC_scaffold_100_5186498 "1/1" NA "1/1"
## HiC_scaffold_100_5828477 "1/1" "0/0" "0/0"
## HiC_scaffold_100_6470419 NA "0/0" "0|1"
## HiC_scaffold_100_6739225 "0/0" "0/1" "1/1"
## HiC_scaffold_100_6739258 "0/0" "0|1" "1|1"
## HiC_scaffold_100_6739264 "0/0" "0|1" "1|1"
## HiC_scaffold_100_6907177 "0/0" "1/1" "0/0"
## HiC_scaffold_100_8384481 "1|1" "1|1" "1|1"
## HiC_scaffold_100_8384495 "1/1" "1|1" "1|1"
## HiC_scaffold_100_9451470 "0/0" "0/0" "0/0"
## HiC_scaffold_100_10464574 "1/1" NA "0/1"
## HiC_scaffold_100_11934792 "0/0" "0/0" "0/0"
## HiC_scaffold_100_11980177 "1/1" "1/1" "1/1"
## HiC_scaffold_100_18465760 "0/0" "0|1" "1|1"
## HiC_scaffold_100_18465762 "0/0" "0|1" "1|1"
## HiC_scaffold_100_18466205 "0/0" "0/2" "0/0"
## HiC_scaffold_100_31738115 NA "1/1" "1/1"
## HiC_scaffold_100_44227362 "0/0" "0/0" "0/0"
## HiC_scaffold_101_12808961 "0/0" "1|1" "0/0"
## HiC_scaffold_101_13897149 "1/1" NA NA
## HiC_scaffold_101_18337279 "0/0" "0/0" "0/0"
## HiC_scaffold_101_20800167 "1/1" "1/1" "0/0"
## HiC_scaffold_102_2260041 "0/0" "0/0" "0/0"
## HiC_scaffold_102_8734519 "0/0" "1|1" "0/0"
## HiC_scaffold_102_10233999 "0/0" "1|1" "1|1"
## HiC_scaffold_102_11446042 "1/1" "0/0" "1/1"
## HiC_scaffold_102_15918694 "1|1" "0/1" "0/1"
## HiC_scaffold_102_15935667 "0/0" "0/0" "0/0"
## HiC_scaffold_102_17442643 "0/1" "0/0" "0/0"
## HiC_scaffold_102_17608969 "0/0" "0/0" "1/1"
## HiC_scaffold_102_20180185 "1/1" NA "0/1"
## HiC_scaffold_102_24788723 "0/1" "0|1" "0/0"
## HiC_scaffold_102_25423729 "1|1" "1|1" "1|1"
## HiC_scaffold_102_39755142 "0/0" "0/0" "0/1"
## HiC_scaffold_102_52046978 "1/1" "0/0" "0/0"
## HiC_scaffold_1027_34152 "0|1" NA "1/1"
## HiC_scaffold_103_601715 "1/1" "0/1" NA
## HiC_scaffold_103_2891384 "1/1" "1/1" "0/0"
## HiC_scaffold_103_8191270 "1|1" "0/2" "0/0"
## HiC_scaffold_103_9521272 "0/1" "1/1" "1/1"
## HiC_scaffold_103_14768909 "0|1" "1|1" "0/0"
## HiC_scaffold_103_19312119 NA "1|1" "1|1"
## HiC_scaffold_103_21284866 "0/0" "0/0" "1/1"
## HiC_scaffold_103_31428453 "0/0" "1|1" "1|1"
## HiC_scaffold_103_42567396 "1/1" "0/1" "1/1"
## HiC_scaffold_103_45921571 "1|1" "0|1" "0|1"
## HiC_scaffold_103_45921573 "1|1" "0|1" "0|1"
## HiC_scaffold_103_49592022 "0/1" "0/1" "1|1"
## HiC_scaffold_103_49620132 "0/0" "0/1" "1|1"
## HiC_scaffold_103_50440915 "0/0" "1|1" "0/0"
## HiC_scaffold_103_51944137 "1/1" "1/1" "1/1"
## HiC_scaffold_103_54308582 "0/0" "0/0" "0/0"
## HiC_scaffold_103_54424067 "0/0" "0/0" NA
## HiC_scaffold_103_56932900 "1/1" "1/1" "0/1"
## HiC_scaffold_103_57470264 "1|1" "1|1" "1|1"
## HiC_scaffold_104_7771140 "1/1" "1/1" "1/1"
## HiC_scaffold_104_9103028 "0/1" "1/1" "1/1"
## HiC_scaffold_104_10633168 "0/0" "0/0" "1/1"
## HiC_scaffold_104_18917031 "1/1" "0/1" "0/0"
## HiC_scaffold_104_20851902 "1/1" "1/1" NA
## HiC_scaffold_104_24451803 "0/0" NA "0/0"
## HiC_scaffold_104_28597688 "0/1" "0/1" "0/0"
## HiC_scaffold_104_40927999 "0/0" "0/0" "0/0"
## HiC_scaffold_104_46490074 "0/1" "0/0" "1/1"
## HiC_scaffold_104_49759053 "0/0" "0/0" NA
## HiC_scaffold_104_57267896 "0/1" "0/1" "0/1"
## HiC_scaffold_104_62570010 "0/0" NA "0/0"
## HiC_scaffold_11_32804173 "0/0" "0/1" NA
## HiC_scaffold_11_34516508 "1/1" "1/1" "1/1"
## HiC_scaffold_11_35332996 NA "0/0" "0/0"
## HiC_scaffold_11_35904027 "0/0" "1/1" "1/1"
## HiC_scaffold_11_41539793 "0/0" "0/0" "1/1"
## HiC_scaffold_11_41604080 "1|1" "1|1" "1|1"
## HiC_scaffold_11_42855323 "0/1" NA "1/1"
## HiC_scaffold_11_45339409 "0|1" "0/0" "0/0"
## HiC_scaffold_11_45339410 "0|1" "0|1" NA
## HiC_scaffold_11_47544035 "1/1" "1/1" "0/1"
## HiC_scaffold_12_7515164 "0/1" "1/1" NA
## HiC_scaffold_12_12640100 "0/1" "1/1" "0/0"
## HiC_scaffold_12_12826705 "0/0" "1|1" "0/0"
## HiC_scaffold_12_14899285 "1/1" "0/1" "0/1"
## HiC_scaffold_12_17465672 "1|1" "0/0" "1/1"
## HiC_scaffold_12_22770710 "0/0" "0/1" "0/0"
## HiC_scaffold_12_32318964 "0/1" "1|1" "0/0"
## HiC_scaffold_12_35136373 "0/0" "1|1" "0/0"
## HiC_scaffold_12_40687860 "0/0" NA "1|1"
## HiC_scaffold_13_2938168 "0|1" "1/1" "1/1"
## HiC_scaffold_13_20350974 "0/1" "0/0" NA
## HiC_scaffold_13_27759554 NA NA "0/0"
## HiC_scaffold_13_28146828 "2|2" "0/0" NA
## HiC_scaffold_13_28146830 "2|2" "0/0" NA
## HiC_scaffold_13_28925343 "1/1" "1/1" "1/1"
## HiC_scaffold_13_31913129 NA "1/1" "0/0"
## HiC_scaffold_13_32078924 "0/0" "1|1" "1|1"
## HiC_scaffold_13_33864805 "0/1" "1/1" NA
## HiC_scaffold_13_34892542 "0/1" "0/0" "0/0"
## HiC_scaffold_13_34893103 "1/1" "1/1" "1/1"
## HiC_scaffold_13_35762551 "0|1" "0/0" "1|1"
## HiC_scaffold_13_35881745 NA "0/0" "0/1"
## HiC_scaffold_13_35881749 "0/0" NA "0/1"
## HiC_scaffold_14_3843214 "1/1" "0/0" "0/0"
## HiC_scaffold_14_25884262 "1|1" "0/2" "0/0"
## HiC_scaffold_14_27050415 "1/1" "0/1" "1/1"
## HiC_scaffold_14_27118495 "1/1" "1/1" "1/1"
## HiC_scaffold_14_27277222 "1|2" "0/1" NA
## HiC_scaffold_14_29215814 "0/0" "1|1" "1|1"
## HiC_scaffold_15_2460398 "0/1" "0/1" "0/0"
## HiC_scaffold_15_2462980 "0/0" "0/1" "0/0"
## HiC_scaffold_15_2467289 "0/1" "1/1" "1/1"
## HiC_scaffold_15_5669141 "1/1" "1/1" "0/0"
## HiC_scaffold_15_13700694 "0/0" "0/2" "0/1"
## HiC_scaffold_15_17825275 "0|1" "1|1" "1|1"
## HiC_scaffold_15_19938475 "0/1" NA "0/0"
## HiC_scaffold_15_23865956 "0/0" "1|1" "0/0"
## HiC_scaffold_15_28837774 "0/1" "0/1" "1/1"
## HiC_scaffold_15_28837810 "0/1" "0/1" "1/1"
## HiC_scaffold_15_28837823 "0/1" "0/1" "1/1"
## HiC_scaffold_15_28837835 "0|1" "0/1" "1|1"
## HiC_scaffold_15_28837841 "0|1" "0/1" "1|1"
## HiC_scaffold_15_28837854 "0/1" "0/1" "0/1"
## HiC_scaffold_15_34827832 "0/0" "1/1" "0/0"
## HiC_scaffold_15_34893807 NA "0/0" "0/0"
## HiC_scaffold_15_35327348 "1/1" "1/1" "0/1"
## HiC_scaffold_15_42161112 "0/0" "1|1" "0/0"
## HiC_scaffold_15_42164926 "0|1" "1|1" "0|1"
## HiC_scaffold_15_42164946 "0/1" "1/1" "1/1"
## HiC_scaffold_15_46289572 "1/1" "0/1" "1/1"
## HiC_scaffold_15_50591576 "1|1" "1|1" "1|1"
## HiC_scaffold_15_50759128 "1|1" "1/1" "1/1"
## HiC_scaffold_15_51188336 "0/1" "0/1" NA
## HiC_scaffold_15_54726640 "1/1" "1/1" "0/0"
## HiC_scaffold_15_54788235 "0/1" "1/1" "0/0"
## HiC_scaffold_15_56162375 NA NA "1|1"
## HiC_scaffold_15_61091106 "1/1" "1/1" "0/0"
## HiC_scaffold_15_61464359 "1/1" "1/1" "1/1"
## HiC_scaffold_15_61510386 "0/0" "0/0" "1/1"
## HiC_scaffold_15_62309788 "0/0" "0/0" "0/0"
## HiC_scaffold_15_62309793 "0/0" "0/0" "0/0"
## HiC_scaffold_15_62771254 "1/1" "0/1" "0/0"
## HiC_scaffold_15_63493927 "1/1" "1/1" "1/1"
## HiC_scaffold_15_64997502 "0/0" "0/0" NA
## HiC_scaffold_15_65007865 "1|1" "1/1" "1/1"
## HiC_scaffold_15_65007879 "0|1" "0/1" "0/0"
## HiC_scaffold_15_66038529 "1/1" "0/1" "0/0"
## HiC_scaffold_15_69811281 "1/1" "1/1" "1/1"
## HiC_scaffold_16_14205925 "1/1" "0|1" "0/0"
## HiC_scaffold_16_30404047 "0/0" "0/0" "0|1"
## HiC_scaffold_16_57413288 "1|1" "0|1" "1|1"
## HiC_scaffold_16_63687578 "1|1" "0/1" "0/0"
## HiC_scaffold_16_74138787 "1/1" "0/0" "0/0"
## HiC_scaffold_16_74140106 "1/1" "0/0" "0/0"
## HiC_scaffold_16_76276015 NA NA "0/0"
## HiC_scaffold_17_11390873 "0|1" "0/1" "1|1"
## HiC_scaffold_17_12551128 NA "0/1" "1/1"
## HiC_scaffold_17_16615612 "1/1" "0/0" "0/0"
## HiC_scaffold_17_18838093 "1|1" "0/1" "0/0"
## HiC_scaffold_17_22801072 "0/1" "1/1" "0/0"
## HiC_scaffold_17_23788599 "1/1" "0/1" "0/0"
## HiC_scaffold_17_29383895 "0/0" "1/1" NA
## HiC_scaffold_17_29618771 "0/0" "1/1" "1/1"
## HiC_scaffold_17_29976139 "1|1" "0/1" "1/1"
## HiC_scaffold_17_31107213 "1/1" "1/1" "0/1"
## HiC_scaffold_17_32493792 "0/0" "0/0" "0/0"
## HiC_scaffold_17_33732050 "1/1" "1/1" "0/0"
## HiC_scaffold_17_33801314 "1|1" "1|1" "0/1"
## HiC_scaffold_17_34081889 "1/1" "1/1" "0/0"
## HiC_scaffold_18_227565 "1/1" "1/1" NA
## HiC_scaffold_18_1213486 "1/1" "0/1" "0/0"
## HiC_scaffold_18_1701312 "0/0" "0/0" "0/0"
## HiC_scaffold_18_3506437 "1/1" NA "1/1"
## HiC_scaffold_18_6304978 "1/1" "1/1" "1/1"
## HiC_scaffold_18_6351493 "1/1" "1/1" "1/1"
## HiC_scaffold_18_6358009 "0/0" "0/0" NA
## HiC_scaffold_18_10770701 "0/0" "0/0" "1/1"
## HiC_scaffold_18_13342858 "1/1" "1/1" NA
## HiC_scaffold_18_20045832 "0/0" "0/0" NA
## HiC_scaffold_18_22682683 "0/0" NA "0/0"
## HiC_scaffold_18_26337790 "0/0" "0/1" "0/0"
## HiC_scaffold_18_48929148 "0/0" NA "0/0"
## HiC_scaffold_18_51490626 "0/0" "1/1" "1/1"
## HiC_scaffold_18_53723137 "1|1" "0/0" "0|1"
## HiC_scaffold_18_54496637 "0/0" "1|1" NA
## HiC_scaffold_18_55294388 "1/1" "0|1" NA
## HiC_scaffold_19_279726 "0/0" "0/0" "0/1"
## HiC_scaffold_19_6426572 "0/0" "0/0" "1/1"
## HiC_scaffold_19_6575887 "0/0" "0/0" "0/0"
## HiC_scaffold_19_7755254 "0/1" "0/0" "0/1"
## HiC_scaffold_19_9301421 "1/1" "1|1" "0/1"
## HiC_scaffold_19_9357388 "0/0" "1|1" "0/0"
## HiC_scaffold_19_9778841 NA "1/1" "1/1"
## HiC_scaffold_19_10928976 "1|1" "0/0" "0/0"
## HiC_scaffold_19_10928980 "1|1" "0/0" "0/0"
## HiC_scaffold_19_10928982 "0/0" NA "1|1"
## HiC_scaffold_19_11106347 "1|1" "1|1" NA
## HiC_scaffold_19_11590139 "1/1" "1/1" "0/1"
## HiC_scaffold_19_11665300 "1/1" "1/1" NA
## HiC_scaffold_19_14793640 "0/0" "0/0" "0/1"
## HiC_scaffold_19_22112743 "0/0" "0/0" "0/1"
## HiC_scaffold_19_25473671 "1/1" "1/1" "1/1"
## HiC_scaffold_19_25473692 "0/0" NA "1/1"
## HiC_scaffold_19_28110829 "1|1" "0/0" "1|1"
## HiC_scaffold_19_28465002 "1/1" "0/0" "1/1"
## HiC_scaffold_19_28465167 "0/1" "0/1" "0/0"
## HiC_scaffold_19_30106869 "0/0" NA "0/0"
## HiC_scaffold_19_52538858 "0/0" "1/1" "1/1"
## HiC_scaffold_19_52596196 "0/0" "1|1" "0/0"
## HiC_scaffold_19_53482993 "1/1" "1/1" NA
## HiC_scaffold_19_54312637 NA "1/1" "0/1"
## HiC_scaffold_19_59345841 "0/0" "0|1" "1|1"
## HiC_scaffold_2_3296144 "1|1" "1|1" "1|1"
## HiC_scaffold_2_3418589 "1/1" "1/1" NA
## HiC_scaffold_2_3864060 "1/1" "0/1" "0/0"
## HiC_scaffold_2_4104755 "0|1" "0/0" "0|2"
## HiC_scaffold_2_4104758 "0/0" "0/0" "0|2"
## HiC_scaffold_2_8316721 "0|1" "0/1" "0|1"
## HiC_scaffold_2_9098999 "1/1" "0/0" "1/1"
## HiC_scaffold_2_10457537 "1/1" "0/0" "0/1"
## HiC_scaffold_2_19048125 "1/1" "0/0" "0/1"
## HiC_scaffold_2_21748201 "1/1" "1/1" "1/1"
## HiC_scaffold_2_33187764 "0/0" "0|1" "0/0"
## HiC_scaffold_2_33187770 "0/0" "0|1" "0/0"
## HiC_scaffold_2_33187959 "0/0" "0/1" "1/1"
## HiC_scaffold_2_41603929 "0/1" "1/1" "1/1"
## HiC_scaffold_2_52233191 "0/0" "0/0" "0/1"
## HiC_scaffold_2_52400748 "1/1" "1/1" "1/1"
## HiC_scaffold_2_52403793 "1|1" "1|1" "1|1"
## HiC_scaffold_2_52799130 "1/1" "0/1" "1/1"
## HiC_scaffold_20_10332897 "0/0" "0/1" "0/1"
## HiC_scaffold_20_17198418 "0/1" "1|1" "0|1"
## HiC_scaffold_20_17915398 "0/0" NA "0/0"
## HiC_scaffold_20_18872955 "0/0" "1/1" "1/1"
## HiC_scaffold_20_19055301 "1/1" "1/1" "1/1"
## HiC_scaffold_20_19150094 "0/1" "0/1" "1/1"
## HiC_scaffold_20_20651022 "0/1" "0/0" "0/0"
## HiC_scaffold_20_22651296 "0/1" "0/1" "1/1"
## HiC_scaffold_21_2009156 "0/0" "1/1" "0/1"
## HiC_scaffold_21_2435648 "0/0" "0/0" "1/1"
## HiC_scaffold_21_7164210 "0/0" "1|1" "0/0"
## HiC_scaffold_21_9786512 "0/0" "0/0" "1/1"
## HiC_scaffold_21_12424922 "1/1" "1|1" "1|1"
## HiC_scaffold_21_17966833 "1/1" "1/1" "1/1"
## HiC_scaffold_21_19025429 "0/1" "0/0" "0/1"
## HiC_scaffold_21_20058318 NA "0/1" "0/0"
## HiC_scaffold_21_20562855 "0|1" "0/0" "0/0"
## HiC_scaffold_21_20661860 "0/1" "0/0" "0/1"
## HiC_scaffold_21_20895395 NA "1|1" "1|1"
## HiC_scaffold_21_21158811 "1|1" "1|1" "1|1"
## HiC_scaffold_21_22250857 "0/1" "0|1" "0/1"
## HiC_scaffold_21_22250866 "0/0" "0|1" NA
## HiC_scaffold_21_22257737 "1|1" "1|1" "1/1"
## HiC_scaffold_21_22644667 "0|1" "0|1" "1|1"
## HiC_scaffold_21_22644673 "0|1" "0|1" "1|1"
## HiC_scaffold_21_22666888 "1/1" "0/0" "0/0"
## HiC_scaffold_21_23905416 "1|1" NA "1|1"
## HiC_scaffold_21_23981651 "1|1" "1|1" "0/0"
## HiC_scaffold_21_24287068 "1/1" "1|1" "0/0"
## HiC_scaffold_21_30798434 "0/0" "1|1" "1|1"
## HiC_scaffold_21_35006232 "1/1" "0/1" "1/1"
## HiC_scaffold_21_35779294 "0/0" "0/1" "0/0"
## HiC_scaffold_22_124910 "0/0" "0/1" "0/1"
## HiC_scaffold_22_751023 "1|1" "0|1" "0/1"
## HiC_scaffold_22_1042644 "0/0" "1|1" "0|1"
## HiC_scaffold_22_1044708 "0/0" "1/1" "1/1"
## HiC_scaffold_22_2174911 "0/1" "0/0" NA
## HiC_scaffold_22_3431122 "0/0" "0/0" "0/0"
## HiC_scaffold_22_3446787 "0/0" "0|1" "1|1"
## HiC_scaffold_22_3451756 "1/1" "1/1" "1/1"
## HiC_scaffold_22_3720435 "1/1" "1/1" "1/1"
## HiC_scaffold_22_4065466 "0/0" NA "0/0"
## HiC_scaffold_22_4739889 "0/2" "0/0" "0/0"
## HiC_scaffold_22_4918263 "0/0" "0|1" "1|1"
## HiC_scaffold_22_5750008 "1/1" "1/1" "1/1"
## HiC_scaffold_22_5769942 "0/0" "0/0" "0|1"
## HiC_scaffold_22_28264522 "1|1" "1/1" NA
## HiC_scaffold_22_28265115 "1/1" NA NA
## HiC_scaffold_22_29205851 "1/1" "1/1" "1|1"
## HiC_scaffold_22_29822340 "1/1" "1/1" "1/1"
## HiC_scaffold_22_30797357 "0/0" "0|1" "0/0"
## HiC_scaffold_22_32042610 "1|1" "1|1" "1|1"
## HiC_scaffold_23_11215327 "1/1" "0/0" "1/1"
## HiC_scaffold_23_27081333 "0/0" "1/1" NA
## HiC_scaffold_23_28672255 "0/1" "1/1" "1/1"
## HiC_scaffold_23_29218828 "0/1" "0/0" "1/1"
## HiC_scaffold_23_32528768 "0/0" "1|1" "1|1"
## HiC_scaffold_23_32669383 "0/0" "1/1" "1/1"
## HiC_scaffold_23_33199663 "0/0" "0/1" "1/1"
## HiC_scaffold_23_33245843 NA "0/1" "1/1"
## HiC_scaffold_23_40824545 "0/0" "1|1" "0|1"
## HiC_scaffold_23_41504669 "0/0" "1/1" "0/1"
## HiC_scaffold_24_16622654 "1/1" "0/0" "0/0"
## HiC_scaffold_24_16622681 "1/1" "0/0" "0/0"
## HiC_scaffold_24_19851560 "0|1" "0/1" "1/1"
## HiC_scaffold_24_20590563 "1/1" "1/1" "0/0"
## HiC_scaffold_24_27745754 "0/1" "0/0" "0/1"
## HiC_scaffold_24_28763699 "1|1" "0/1" "0/0"
## HiC_scaffold_24_28763703 "0/1" "1|1" "1|1"
## HiC_scaffold_25_4135969 "1/1" "0/0" "0/0"
## HiC_scaffold_25_4201677 "0/0" "1/1" "1/1"
## HiC_scaffold_25_5872831 "0/0" "0/0" "0/1"
## HiC_scaffold_25_6879627 NA "0/0" "0/0"
## HiC_scaffold_25_8172813 "1/1" "1/1" NA
## HiC_scaffold_25_9969507 "0/0" "0/1" "0/1"
## HiC_scaffold_25_10691336 "1/1" "0/1" "0/0"
## HiC_scaffold_25_21286462 "0/1" "1/1" "0/0"
## HiC_scaffold_26_4086662 "0/1" "0/1" "0/0"
## HiC_scaffold_26_7539671 "0/0" "1|1" "1|1"
## HiC_scaffold_26_8348511 "1/1" "1/1" "0/0"
## HiC_scaffold_26_9043748 "1|1" "0/0" "0/1"
## HiC_scaffold_26_9045655 "0/0" "1|1" "0/0"
## HiC_scaffold_26_11253181 "0/1" "0|1" "0|1"
## HiC_scaffold_26_17828344 "1/1" "1/1" "1/1"
## HiC_scaffold_26_17932520 "1/1" NA "1/1"
## HiC_scaffold_26_17941459 "0/0" NA "0/0"
## HiC_scaffold_26_17960877 "0/0" "1/1" NA
## HiC_scaffold_26_18284041 "0/1" "0/1" "0/0"
## HiC_scaffold_26_18288701 "1|1" "0|1" NA
## HiC_scaffold_26_18294422 "0/1" "0/0" NA
## HiC_scaffold_26_21307365 "1/1" "0/0" "0/0"
## HiC_scaffold_26_22159924 "1/1" "1/1" "1/1"
## HiC_scaffold_26_22161535 "0/1" "0/0" "1/1"
## HiC_scaffold_26_24794176 NA "1/1" "1/1"
## HiC_scaffold_26_28538113 NA "0|1" "1|1"
## HiC_scaffold_26_29031357 "1/1" "1/1" "1/1"
## HiC_scaffold_26_29163462 "0/1" "1/1" "0/0"
## HiC_scaffold_26_42631018 "0/0" "1|1" "0/1"
## HiC_scaffold_26_42634814 "0/1" "1/1" "0/1"
## HiC_scaffold_26_43483190 "0/1" "0/0" "0/0"
## HiC_scaffold_26_49955889 "0/0" "0/0" NA
## HiC_scaffold_26_58342510 "0/0" "0/0" "0/0"
## HiC_scaffold_27_1496120 "0/0" "0|1" "0/0"
## HiC_scaffold_27_1947057 "0/0" "0/0" "1/1"
## HiC_scaffold_27_2359058 "1|1" "1|1" "1|1"
## HiC_scaffold_27_2699645 "0/1" NA "0/0"
## HiC_scaffold_27_4425475 "1|1" "0/0" "0/0"
## HiC_scaffold_27_7539469 "0/0" "0/1" NA
## HiC_scaffold_27_7777122 "1/1" "1|1" "0/0"
## HiC_scaffold_27_16657070 "0/1" "0/0" "0/0"
## HiC_scaffold_27_24539255 "0/0" "1|1" "1|1"
## HiC_scaffold_27_34642359 "1|1" "1|1" "1|1"
## HiC_scaffold_27_34647277 "0/0" "0/0" "0/0"
## HiC_scaffold_27_35380535 "0/1" "1/1" "1/1"
## HiC_scaffold_27_35383230 "1|1" "0/0" "0/1"
## HiC_scaffold_28_21261390 "0|1" "0/0" "0|1"
## HiC_scaffold_28_24490442 "0/0" "0/1" "0/0"
## HiC_scaffold_28_25601927 "1/1" "1/1" "1/1"
## HiC_scaffold_28_31793968 "0/0" "1|1" "0|1"
## HiC_scaffold_28_32126687 "0/0" "0/0" "1|1"
## HiC_scaffold_28_34779518 "1/1" "0/0" "1/1"
## HiC_scaffold_28_36042491 "1/1" "0|1" "0/0"
## HiC_scaffold_28_36692361 "1/1" "0/0" "0/0"
## HiC_scaffold_28_38672993 "0/0" "1|1" "0/1"
## HiC_scaffold_28_39640526 "1/1" NA "0/0"
## HiC_scaffold_28_40169242 "0/0" "1/1" "0/0"
## HiC_scaffold_28_41059640 "1|1" "0/0" "1|1"
## HiC_scaffold_28_42514830 NA "0/0" "1/1"
## HiC_scaffold_28_42601570 "1/1" "0/0" "0/1"
## HiC_scaffold_28_42601585 "0/0" "1/1" "0/0"
## HiC_scaffold_28_43018803 "0/1" "0/0" "1/1"
## HiC_scaffold_28_43036165 "0/0" "1/1" "1/1"
## HiC_scaffold_29_344317 "0/0" "0/0" "0/1"
## HiC_scaffold_29_3811176 "0/1" "0/1" "0/1"
## HiC_scaffold_29_6073993 NA "0/0" "0/0"
## HiC_scaffold_29_6415222 "0/0" "0/0" "0/2"
## HiC_scaffold_29_8224424 "0/1" "1/1" "0/1"
## HiC_scaffold_29_11153624 "0/1" "0/1" NA
## HiC_scaffold_29_11153712 "0/1" "0/1" "0/0"
## HiC_scaffold_29_11167966 NA "1/1" "1/1"
## HiC_scaffold_29_11491468 "1/1" "0/0" "0/0"
## HiC_scaffold_29_12103558 "0/1" "0/0" NA
## HiC_scaffold_29_14279322 "0/0" "0/0" "0/1"
## HiC_scaffold_29_14913907 "0/0" "0/0" "1|1"
## HiC_scaffold_29_16378276 "0/1" "1/1" "1/1"
## HiC_scaffold_29_20635937 "0/0" "0/1" NA
## HiC_scaffold_29_20636787 "0/1" "0/0" "1/1"
## HiC_scaffold_29_22560215 "0/1" "1/1" "1/1"
## HiC_scaffold_29_22561144 "0/1" "1/1" "0/0"
## HiC_scaffold_29_24017849 "0/0" "0/0" NA
## HiC_scaffold_29_31603590 "0/1" "1/1" "0/0"
## HiC_scaffold_3_21670751 "0/1" "0/1" "0/1"
## HiC_scaffold_3_24747014 "0/1" "0/0" "0/1"
## HiC_scaffold_3_27861792 "0/1" "0/0" NA
## HiC_scaffold_3_28057869 "1/1" "0/1" "0/0"
## HiC_scaffold_3_28441436 "0/1" "0/0" "1/1"
## HiC_scaffold_3_28694380 "1|1" "0/0" NA
## HiC_scaffold_3_31361023 "0/1" "0/0" "0/1"
## HiC_scaffold_3_31960572 NA "0/0" "1|1"
## HiC_scaffold_3_32157169 "1/1" "0/0" "0/0"
## HiC_scaffold_3_32159152 "0/0" NA "0/0"
## HiC_scaffold_3_34124237 "1/1" "0/0" "0/1"
## HiC_scaffold_30_14199802 "0/0" "1|1" "1/1"
## HiC_scaffold_30_16052331 "0/1" "1/1" NA
## HiC_scaffold_30_19914075 "0/1" NA "1/1"
## HiC_scaffold_30_20688783 "0/0" "1/1" NA
## HiC_scaffold_30_21446076 "1|1" "0/0" "0/0"
## HiC_scaffold_30_21598563 "1/1" "0/1" "0/0"
## HiC_scaffold_30_22155728 "0/0" "0/1" NA
## HiC_scaffold_31_687411 "0|1" "0/0" "0/0"
## HiC_scaffold_31_3224722 "0/1" "0/0" "0/1"
## HiC_scaffold_31_3574854 "0/0" "0/0" "1/1"
## HiC_scaffold_31_5899551 NA "1/1" "1/1"
## HiC_scaffold_31_5911491 "0/0" "0/0" "0/0"
## HiC_scaffold_31_6297680 "0/0" "1/1" "0/1"
## HiC_scaffold_31_12394016 NA "1|1" "1|1"
## HiC_scaffold_31_12394040 NA "0/0" "0/0"
## HiC_scaffold_31_18612650 "0/1" "1/1" "0/0"
## HiC_scaffold_32_4446859 "0/0" "1/1" "0/1"
## HiC_scaffold_32_5274796 "0/0" "0/1" "1/1"
## HiC_scaffold_32_5275108 "1/1" "0/0" "0/0"
## HiC_scaffold_32_5282358 "1/1" "1/1" "0/0"
## HiC_scaffold_32_5450203 "1|1" "1|1" "0/0"
## HiC_scaffold_32_44200178 "0/1" "1/1" "1/1"
## HiC_scaffold_33_638523 "0/0" "0/0" "0/1"
## HiC_scaffold_33_44489563 "0/0" "0/0" "0/0"
## HiC_scaffold_33_44489988 "0/1" "1/1" "0/0"
## HiC_scaffold_33_47080180 "1/1" "0/1" "0/0"
## HiC_scaffold_33_47495907 "1/1" "0|1" "1|1"
## HiC_scaffold_33_51865876 "0/0" "1/1" "0/1"
## HiC_scaffold_34_1096982 "0/1" "0/0" "0/0"
## HiC_scaffold_34_6091943 "0/0" "1|1" "1|1"
## HiC_scaffold_34_6100160 "0/0" "1|1" "1|1"
## HiC_scaffold_34_24368584 "0/0" NA "1/1"
## HiC_scaffold_35_3233120 "0/1" "0/0" "0|1"
## HiC_scaffold_35_3253574 "0/0" "0/1" "0/1"
## HiC_scaffold_35_5512296 "0/1" "0/1" "1/1"
## HiC_scaffold_35_15114788 "1/1" "1/1" "1/1"
## HiC_scaffold_35_21214090 "0/1" "0/0" NA
## HiC_scaffold_35_21462564 "0/0" NA "0/0"
## HiC_scaffold_35_22746783 "0/0" "0/0" "0/0"
## HiC_scaffold_35_22747085 "0/1" "1|1" "0/0"
## HiC_scaffold_35_23059580 "1/1" "0/0" "0/0"
## HiC_scaffold_35_23158882 "0/0" "1/1" NA
## HiC_scaffold_35_23261143 "1/1" "1|1" "1/1"
## HiC_scaffold_35_24403602 "0/0" "1/1" "0/0"
## HiC_scaffold_35_24403620 "0/0" "1/1" "1/1"
## HiC_scaffold_35_24993986 "1/1" "1/1" "0/0"
## HiC_scaffold_35_24993998 "1|1" "1|1" "0/1"
## HiC_scaffold_36_1538038 "1/1" "0/0" "1/1"
## HiC_scaffold_36_2464728 "1/1" "0|1" "1/1"
## HiC_scaffold_36_5489050 "0/1" "0/1" "1/1"
## HiC_scaffold_36_9673981 "0/0" "0|1" "0/0"
## HiC_scaffold_36_9674127 "1/1" "1/1" NA
## HiC_scaffold_36_9674756 "0/1" "1/1" "1/1"
## HiC_scaffold_36_9676329 "1/1" "1/1" "1/1"
## HiC_scaffold_36_12304516 "0/0" "0/0" "1/1"
## HiC_scaffold_36_12515555 "0|1" "0|1" "1|1"
## HiC_scaffold_36_13092647 "1/1" "0/0" "0/0"
## HiC_scaffold_36_13766994 "1/1" NA NA
## HiC_scaffold_36_14567741 "1/1" "1/1" "1/1"
## HiC_scaffold_36_15530578 "1|1" "1|1" "0/1"
## HiC_scaffold_37_679894 "1/1" "1/1" "1/1"
## HiC_scaffold_37_916693 "0/0" "0/0" "0|1"
## HiC_scaffold_37_928146 "1/1" "0/1" "0/0"
## HiC_scaffold_37_1256768 "0/0" NA "0/0"
## HiC_scaffold_37_1270034 "1/1" "1/1" "1/1"
## HiC_scaffold_37_1770997 "0|1" "0/0" "1/1"
## HiC_scaffold_37_1798298 "1|1" "1/1" "1/1"
## HiC_scaffold_37_2010342 "0/0" "1|1" "1|1"
## HiC_scaffold_37_2141526 "0/0" "1/1" "0/1"
## HiC_scaffold_37_3952190 "1|1" "0/0" "1|1"
## HiC_scaffold_37_3952215 "1|1" "0/0" "1|1"
## HiC_scaffold_37_9915037 "0/1" "1/1" NA
## HiC_scaffold_38_5383430 "0/0" "1/1" "0/0"
## HiC_scaffold_38_5668363 "0/0" "1/1" "0/0"
## HiC_scaffold_38_5879849 "0/0" "1/1" "0/0"
## HiC_scaffold_38_5880155 "1/1" "0/0" "1/1"
## HiC_scaffold_38_10612790 "1/1" "0/1" "0/1"
## HiC_scaffold_38_11940240 "2|2" "0|1" "0|1"
## HiC_scaffold_38_12878826 "0/0" NA "0|1"
## HiC_scaffold_38_12959698 "1/1" "0/0" "1|1"
## HiC_scaffold_38_13087368 "1/1" "1/1" "1/1"
## HiC_scaffold_38_13480648 "0/0" "1|1" "0/0"
## HiC_scaffold_38_13965243 NA "1/1" "1/1"
## HiC_scaffold_38_14089955 "1/1" "0/0" "0/0"
## HiC_scaffold_38_14408072 "1|1" "1|1" "0/0"
## HiC_scaffold_38_14931216 "0|0" "0/1" "0/1"
## HiC_scaffold_38_14978356 "1|1" "0/0" "0/0"
## HiC_scaffold_38_14978367 "1|1" "0/0" "0/0"
## HiC_scaffold_38_15292863 "0/0" "0/1" "0/0"
## HiC_scaffold_38_15306135 "0/0" "0/1" "1|1"
## HiC_scaffold_38_16077506 "0/0" "0/1" NA
## HiC_scaffold_38_16138965 "1/1" "1/1" "1/1"
## HiC_scaffold_38_16226040 NA "0/1" NA
## HiC_scaffold_39_1393769 "0/1" "1|1" "0/0"
## HiC_scaffold_39_2014970 "1|1" "1|1" "0/0"
## HiC_scaffold_39_2014982 "1|1" "1|1" "0/0"
## HiC_scaffold_39_2014985 "1|1" "1|1" "0/0"
## HiC_scaffold_39_2426443 "0|1" "0/0" "1|1"
## HiC_scaffold_39_2485330 "0/0" NA "1|1"
## HiC_scaffold_39_3350506 "1|1" "1|1" "1|1"
## HiC_scaffold_39_5897388 "0/0" "1|1" "0/0"
## HiC_scaffold_39_17631133 "0/1" "0/0" "0/0"
## HiC_scaffold_4_12107187 NA NA "1/1"
## HiC_scaffold_4_18241670 "1|1" NA "1|1"
## HiC_scaffold_4_18241723 "1/1" NA "1/1"
## HiC_scaffold_4_22418566 "0|1" NA NA
## HiC_scaffold_4_27899990 "1|1" "0/0" "0/0"
## HiC_scaffold_4_35575118 "0/0" "0/1" "0/0"
## HiC_scaffold_4_38000967 NA "1/1" "1/1"
## HiC_scaffold_4_50654021 NA "0/0" NA
## HiC_scaffold_40_2243415 "0/0" "0|1" "1/1"
## HiC_scaffold_40_3000572 "1/1" "1/1" "0/1"
## HiC_scaffold_40_3014177 "1/1" "1/1" "1|1"
## HiC_scaffold_40_3027900 "1/1" "0/1" "0/0"
## HiC_scaffold_40_3143834 "0/0" "0/1" "0/1"
## HiC_scaffold_40_3843942 "0/0" "1/1" NA
## HiC_scaffold_40_3847620 "0/1" "0/0" "0/0"
## HiC_scaffold_40_3891007 "0/1" "0/0" NA
## HiC_scaffold_40_3920667 "1|1" "2/2" "2/2"
## HiC_scaffold_40_4177963 NA "0/1" "0/0"
## HiC_scaffold_40_4819107 "0/0" "0/0" "0/0"
## HiC_scaffold_40_4819834 "1|1" "1/1" "1|1"
## HiC_scaffold_40_5788271 "0/0" "0/0" NA
## HiC_scaffold_40_5965269 "0/0" "0|0" "1|1"
## HiC_scaffold_40_6204154 "0/1" "0/0" "1/1"
## HiC_scaffold_40_8387917 "1/1" "0/0" "1/1"
## HiC_scaffold_41_3235384 "0/1" "0/0" "0/0"
## HiC_scaffold_41_3583000 "0/0" "0/0" "0/0"
## HiC_scaffold_41_5334504 "1/1" "1/1" "1|1"
## HiC_scaffold_41_5387631 "1|1" "1|1" "0/0"
## HiC_scaffold_41_6423426 "0/0" "0/1" "0/0"
## HiC_scaffold_41_14359947 "0/0" "0/1" "0/0"
## HiC_scaffold_41_24007593 "0/0" "0/0" "1|1"
## HiC_scaffold_41_26225447 "0/1" "0/1" "0/0"
## HiC_scaffold_41_28626484 "1/1" "0/0" NA
## HiC_scaffold_41_28660620 "1|1" "0/0" "1|1"
## HiC_scaffold_41_31007688 "0/0" "0/0" "0/0"
## HiC_scaffold_42_1131084 "0/1" "0/0" NA
## HiC_scaffold_42_1818523 "0/0" "0/0" "0/1"
## HiC_scaffold_42_2165002 "0/0" "0/0" "0/0"
## HiC_scaffold_42_2711332 "1|1" "0/1" "0/0"
## HiC_scaffold_42_6142699 NA "1/1" "1/1"
## HiC_scaffold_42_6744976 "0/1" "0/0" "0/0"
## HiC_scaffold_42_8066919 "0/0" "1|1" "1|1"
## HiC_scaffold_42_8068292 NA "0/1" "0/1"
## HiC_scaffold_42_12487888 "1|1" "1|1" "0/0"
## HiC_scaffold_42_41366687 "0/0" "1/1" "1/1"
## HiC_scaffold_42_47313337 "0/0" "0/0" "1|1"
## HiC_scaffold_42_47313338 "0/0" "0/0" "1|1"
## HiC_scaffold_42_50784971 "0|1" "1|1" "0/0"
## HiC_scaffold_42_50784977 "0|1" "1|1" NA
## HiC_scaffold_42_50784981 "0/0" "0/0" NA
## HiC_scaffold_42_51916989 "0/0" "1/1" "1/1"
## HiC_scaffold_43_3842003 "1/1" "1/1" "1/1"
## HiC_scaffold_43_14140861 "0/1" "1|1" "0/0"
## HiC_scaffold_43_15053605 "1/1" "1/1" "1/1"
## HiC_scaffold_43_17289945 "0/0" "0/0" NA
## HiC_scaffold_43_29967704 "1/1" "0/0" NA
## HiC_scaffold_43_35745831 "1|1" "0/1" NA
## HiC_scaffold_43_37627949 "0|1" "0|1" "0|1"
## HiC_scaffold_43_37628126 "0/0" "1/1" "0/0"
## HiC_scaffold_43_44017118 "0/1" "1/1" "1/1"
## HiC_scaffold_43_55124138 "0/1" "0/1" "1|1"
## HiC_scaffold_43_60107326 "0|1" "0|1" "0/0"
## HiC_scaffold_43_61359386 "1/1" "0/1" "1/1"
## HiC_scaffold_43_61702593 "0/0" "1|1" "0/0"
## HiC_scaffold_43_61702606 "0/0" "1|1" "0/0"
## HiC_scaffold_43_61702721 "0/1" "0/0" "0/0"
## HiC_scaffold_43_61702738 "0/1" "1/1" "0/0"
## HiC_scaffold_43_62511703 "1|1" NA "0/0"
## HiC_scaffold_43_64069457 "1/1" "0/0" "0/0"
## HiC_scaffold_43_64577269 "1/1" "1/1" "1/1"
## HiC_scaffold_44_1920144 "0/0" "1|1" "0/0"
## HiC_scaffold_44_2148035 "0/0" "1/1" "0/0"
## HiC_scaffold_44_2568167 "0/0" "0/1" "1/1"
## HiC_scaffold_45_4180070 NA "0/0" "0/1"
## HiC_scaffold_45_4797754 "2/2" "0/0" NA
## HiC_scaffold_45_5911123 NA "1|1" "0/0"
## HiC_scaffold_45_6958990 "1/1" "1/1" "0/1"
## HiC_scaffold_45_8516216 "1|1" "1|1" "1|1"
## HiC_scaffold_45_10191213 "1/1" "0/1" "0/0"
## HiC_scaffold_45_12005885 "0/0" "0/1" "0/1"
## HiC_scaffold_45_12006766 "0/0" "0|1" "0/0"
## HiC_scaffold_45_24736172 "0/0" "0/0" "0/1"
## HiC_scaffold_45_24739830 "0/0" "0/0" "1|1"
## HiC_scaffold_46_9691567 "1|1" "0/0" "0/1"
## HiC_scaffold_46_17380257 "1/1" "1/1" "0/0"
## HiC_scaffold_46_18387147 "1|1" "0/1" "0|1"
## HiC_scaffold_46_37092355 "0/0" "0/0" "0/0"
## HiC_scaffold_46_39183624 "0/0" "1/1" "1/1"
## HiC_scaffold_46_39390547 "1/1" "1/1" "1/1"
## HiC_scaffold_46_42964941 "0/1" "1|1" "0|1"
## HiC_scaffold_46_42986653 "0/0" "0/1" "0/0"
## HiC_scaffold_46_52074364 "1|1" "1|1" "1|1"
## HiC_scaffold_46_54255667 "1/1" "1/1" "0/1"
## HiC_scaffold_47_3750532 "0/0" "0/0" "0/0"
## HiC_scaffold_47_3751345 NA "0/0" "1/1"
## HiC_scaffold_47_15400639 "0|1" "1|1" "1|1"
## HiC_scaffold_47_24072414 "0/1" "1|1" "1|1"
## HiC_scaffold_47_25273825 "0/0" "1|1" "0/0"
## HiC_scaffold_48_8752752 "2/2" "0/0" "0/0"
## HiC_scaffold_48_10765920 "0/0" "1/1" "0/0"
## HiC_scaffold_48_16077918 "0/0" "0/0" "0/0"
## HiC_scaffold_48_16077940 "0/0" "0/0" "1/1"
## HiC_scaffold_48_16411609 "0/0" NA "1/1"
## HiC_scaffold_48_19972580 "0/1" "0/1" "1/1"
## HiC_scaffold_48_23493079 "0/0" "1|1" "1|1"
## HiC_scaffold_48_23597210 "1|1" NA "0/1"
## HiC_scaffold_48_24478493 "0/0" "0|1" "0/1"
## HiC_scaffold_48_24881148 "0/1" "1/1" NA
## HiC_scaffold_48_25865723 "1/1" "1/1" NA
## HiC_scaffold_48_25984068 "1|1" "0/0" NA
## HiC_scaffold_48_25989079 "1/1" "1/1" "1/1"
## HiC_scaffold_48_30601375 "1|1" "1|1" "0|1"
## HiC_scaffold_48_31662115 "0/1" "1/1" "1/1"
## HiC_scaffold_48_41971562 NA "0/0" "0/0"
## HiC_scaffold_49_3392801 "0/0" "1|1" "0/0"
## HiC_scaffold_49_6101692 "0/1" "1/1" NA
## HiC_scaffold_49_7996315 "0/0" "0/0" "0/0"
## HiC_scaffold_49_9470474 "1/1" "0/1" "0/0"
## HiC_scaffold_49_9886007 "0/1" "0/0" "1/1"
## HiC_scaffold_49_12592113 "0/0" "0/0" NA
## HiC_scaffold_49_12741575 "1/1" "0/1" "0/0"
## HiC_scaffold_49_15135019 "1/1" "1/1" "1/1"
## HiC_scaffold_49_25906219 "0/0" "1|1" "0/0"
## HiC_scaffold_49_26614199 "1/1" "1/1" "1/1"
## HiC_scaffold_49_26655554 "0/0" "1/1" "0/0"
## HiC_scaffold_49_37568341 "1/1" "1/1" "0/0"
## HiC_scaffold_49_37568353 "1/1" "1/1" "0/0"
## HiC_scaffold_49_40002255 "1|1" "0|1" "1|1"
## HiC_scaffold_49_40003229 "0/0" "0/1" "0/0"
## HiC_scaffold_49_42966376 "0/1" "1|1" "1/1"
## HiC_scaffold_5_801252 "0/1" "0/1" "1/1"
## HiC_scaffold_5_1446603 "1|1" "1|1" "0/0"
## HiC_scaffold_5_1446611 "1|1" "1|1" "0/0"
## HiC_scaffold_5_1530759 "0/0" "0/0" "0/0"
## HiC_scaffold_5_1539275 "0/0" "0/0" "0/0"
## HiC_scaffold_5_1789576 "0/0" "0/0" "1|1"
## HiC_scaffold_5_1808197 "1/1" "0/0" NA
## HiC_scaffold_5_1808204 "0/0" "1/1" "0/0"
## HiC_scaffold_5_1943895 "1|1" "1|1" "0/1"
## HiC_scaffold_5_1944469 "1/1" "1/1" "1/1"
## HiC_scaffold_5_2857283 "0/0" "0/0" "1|1"
## HiC_scaffold_5_4061378 "0/1" "1/1" "1/1"
## HiC_scaffold_5_4340647 NA "0/0" NA
## HiC_scaffold_5_4435246 "1/1" "0/1" "1/1"
## HiC_scaffold_5_8868783 "0/0" "1/1" "0/1"
## HiC_scaffold_50_4315969 "0/1" "0/1" "0/1"
## HiC_scaffold_50_11652296 "0/1" "1|1" "1/1"
## HiC_scaffold_50_11657309 "0/0" "0/1" "1/1"
## HiC_scaffold_50_15521027 "1/1" "0/1" "0/1"
## HiC_scaffold_50_21050962 "1/1" "0/0" "0/0"
## HiC_scaffold_50_23686202 "0|1" "1/1" "0/1"
## HiC_scaffold_50_27393462 "0|1" "0|1" "0/0"
## HiC_scaffold_50_42586883 "0/0" "1/1" "0/0"
## HiC_scaffold_50_45087211 "1/1" "1/1" "0/1"
## HiC_scaffold_50_49796550 "1/1" NA "1/1"
## HiC_scaffold_50_54383367 "0/0" NA "0/1"
## HiC_scaffold_50_63318678 "1/1" "1/1" NA
## HiC_scaffold_51_3521000 "0/0" "0/1" "0/1"
## HiC_scaffold_51_4681905 "1/1" NA "0/1"
## HiC_scaffold_51_6305599 "0/1" "0/0" "0/0"
## HiC_scaffold_51_8530818 "0/0" "0/1" "0/0"
## HiC_scaffold_51_11653312 NA "0/0" "1/1"
## HiC_scaffold_51_13138547 "1/1" "1/1" "1/1"
## HiC_scaffold_51_14457091 "0/0" "0/0" "0/0"
## HiC_scaffold_51_15512668 "0|1" "0/1" "0/1"
## HiC_scaffold_51_17816346 "1/1" "0/1" "1/1"
## HiC_scaffold_51_19997934 "1|1" "1|1" NA
## HiC_scaffold_51_19997936 "1|1" "1|1" NA
## HiC_scaffold_51_20870773 "0/0" "0/1" "0/0"
## HiC_scaffold_51_26660104 "0/0" NA "0/0"
## HiC_scaffold_51_40727521 "1|1" "1|1" "1|1"
## HiC_scaffold_51_40892841 "0/1" "0/1" "0/1"
## HiC_scaffold_51_41717519 "1/1" "1/1" "0/1"
## HiC_scaffold_51_42547638 "0/1" "1/1" "1/1"
## HiC_scaffold_52_3335804 "1/1" "0/0" "0/1"
## HiC_scaffold_52_4149130 "0/1" "0/0" "0/0"
## HiC_scaffold_52_6893679 "1|1" "1|1" "1|1"
## HiC_scaffold_52_13155416 "1/1" "1/1" "1/1"
## HiC_scaffold_52_13155437 "1|1" "1|1" "1|1"
## HiC_scaffold_52_13155442 "1|1" "1|1" NA
## HiC_scaffold_52_14885688 "1/1" "0/1" "0/0"
## HiC_scaffold_52_14895078 NA "0/0" "0/0"
## HiC_scaffold_52_15141791 "0/1" "0/1" "0/0"
## HiC_scaffold_52_15743051 "0/0" "0/1" "1|1"
## HiC_scaffold_52_15760201 "1/1" "1/1" "0/1"
## HiC_scaffold_52_15834589 "0/0" "1|1" "0/0"
## HiC_scaffold_52_15841769 "1/1" "0/0" "0/0"
## HiC_scaffold_52_15862421 "0|1" "1|1" "0|1"
## HiC_scaffold_52_15970970 "0/2" "0/0" "1/1"
## HiC_scaffold_52_16275237 "0/0" "0/1" "1/1"
## HiC_scaffold_52_16275240 "1|1" "0/0" "0/0"
## HiC_scaffold_52_16275290 "0/1" "0/0" "0/0"
## HiC_scaffold_52_16524164 "0/0" NA "0/0"
## HiC_scaffold_52_16524572 "1/1" "1/1" "0/0"
## HiC_scaffold_52_16525647 "1/1" "1/1" "0/0"
## HiC_scaffold_52_16637047 "1/1" "1/1" "1/1"
## HiC_scaffold_52_17202127 "1|1" "0/0" "0/0"
## HiC_scaffold_52_17207724 "1/1" "1/1" "1/1"
## HiC_scaffold_52_17508820 "0/0" "1|1" "0/0"
## HiC_scaffold_52_17547593 "0/0" "0/1" "1/1"
## HiC_scaffold_52_17551239 "1/1" "1/1" "1/1"
## HiC_scaffold_52_17560696 "0/0" "1|1" "1|1"
## HiC_scaffold_52_17560699 "0/0" "0|1" "1|1"
## HiC_scaffold_52_17741250 "0/0" NA "0/0"
## HiC_scaffold_52_17742260 "0|1" "1|1" "0|1"
## HiC_scaffold_52_18340578 "0/0" "1/1" "1/1"
## HiC_scaffold_52_18415911 "1/1" "0/0" "0/1"
## HiC_scaffold_52_22189517 "0/0" "0/1" "1/1"
## HiC_scaffold_52_22526592 "1/1" "0/1" NA
## HiC_scaffold_52_26393471 "0/1" "0/1" "1/1"
## HiC_scaffold_52_26799380 "0/1" NA "0/1"
## HiC_scaffold_52_31871931 NA "0/0" NA
## HiC_scaffold_52_31874283 "1|1" "1/1" "1/1"
## HiC_scaffold_52_31874287 "0|1" "0/0" "0/0"
## HiC_scaffold_52_32161053 "1|1" "1|1" "1|1"
## HiC_scaffold_52_33165557 "0/0" "0/1" "1/1"
## HiC_scaffold_52_33897620 "0/0" "0/0" "0/0"
## HiC_scaffold_52_34763156 NA "1/1" "0/1"
## HiC_scaffold_52_34763171 NA "1/1" "0/1"
## HiC_scaffold_52_35174755 "0|1" NA "0/0"
## HiC_scaffold_52_35608453 "1/1" "0/1" "1/1"
## HiC_scaffold_52_35608470 "1|1" "0/1" "1|1"
## HiC_scaffold_52_39464728 "1|1" NA "0/0"
## HiC_scaffold_52_42141354 "1|1" "0/0" "0/1"
## HiC_scaffold_52_44675725 "1/1" "1/1" "1/1"
## HiC_scaffold_52_49935920 "0/1" "1/1" "1/1"
## HiC_scaffold_53_21789524 "1/1" "0/1" "0/0"
## HiC_scaffold_53_25168042 "0/1" NA "1|1"
## HiC_scaffold_53_26398989 "0/0" "0/0" NA
## HiC_scaffold_53_26398992 "0/0" "0/0" NA
## HiC_scaffold_53_26398994 "0/0" "0/0" NA
## HiC_scaffold_53_26549665 "0/1" "0/0" "0/0"
## HiC_scaffold_53_29227676 "0|1" NA "1|1"
## HiC_scaffold_53_31250349 "1/1" "1/1" "0/1"
## HiC_scaffold_54_530581 "1|1" "1|1" "1|1"
## HiC_scaffold_54_794095 NA "0/0" "1|1"
## HiC_scaffold_54_1171109 "0/0" "1|1" "0|1"
## HiC_scaffold_54_1378956 "0/0" "1/1" "0/1"
## HiC_scaffold_54_1380539 "0/0" "0/1" "1/1"
## HiC_scaffold_54_3045015 "1/1" "0/1" "1/1"
## HiC_scaffold_54_3185987 "1/1" "0/0" "0/0"
## HiC_scaffold_54_4401098 "1|1" "0/0" "0/1"
## HiC_scaffold_54_5595903 "0/0" "0/1" "0/0"
## HiC_scaffold_54_5595921 "0/0" "0/1" "0/0"
## HiC_scaffold_54_5595928 "0/0" "0/0" "1|1"
## HiC_scaffold_54_5595949 "0/0" "1/1" "0/0"
## HiC_scaffold_54_6649662 NA "1/1" "1/1"
## HiC_scaffold_54_8036734 "1|1" "0/0" "0/0"
## HiC_scaffold_54_9206614 "1/1" "1/1" "0/0"
## HiC_scaffold_54_35913192 "0/0" "0/0" "0/1"
## HiC_scaffold_54_35913282 NA "0|1" "0|1"
## HiC_scaffold_54_35913283 NA "0|1" "0|1"
## HiC_scaffold_55_1260491 "1/1" "0/1" "1/1"
## HiC_scaffold_55_3254027 "1/1" "1/1" "0/1"
## HiC_scaffold_55_3281985 "1|1" "1|1" "1|1"
## HiC_scaffold_55_5409544 "1/1" "1/1" "0|1"
## HiC_scaffold_55_5411094 "1|1" "1|1" "0/1"
## HiC_scaffold_55_5411115 "1/1" "1/1" "0/0"
## HiC_scaffold_55_18121799 "1/1" "0/1" "1/1"
## HiC_scaffold_55_19605809 "0/0" "1|1" "0|1"
## HiC_scaffold_55_19605817 NA "1|1" "0|1"
## HiC_scaffold_55_19605821 NA "1|1" "0|1"
## HiC_scaffold_55_20195204 "1/1" "1/1" "0/0"
## HiC_scaffold_55_20886967 "0/0" "1/1" "0/0"
## HiC_scaffold_55_23222937 "1/1" "1/1" "0/0"
## HiC_scaffold_55_23626331 "1/1" "0/1" "0/0"
## HiC_scaffold_55_24539590 "1/1" "1/1" "0/0"
## HiC_scaffold_55_24585939 "1/1" "1/1" NA
## HiC_scaffold_55_34174151 "0/1" "0/1" "0/0"
## HiC_scaffold_56_17874332 "0/0" "0/1" "0/1"
## HiC_scaffold_56_18635259 "1|1" "1|1" "0/0"
## HiC_scaffold_56_23654344 "0/1" "1/1" "0/0"
## HiC_scaffold_56_35850533 "0/0" "0/0" "0/0"
## HiC_scaffold_56_35850539 "1/1" "0/0" "1/1"
## HiC_scaffold_56_40813556 "0/0" "0/0" "1/1"
## HiC_scaffold_56_53211633 "0/1" "0/0" "1/1"
## HiC_scaffold_56_60070829 NA "1/1" "1|1"
## HiC_scaffold_56_73286017 "1|1" "0/1" "0/1"
## HiC_scaffold_56_73829442 "0/0" "0/0" "0/0"
## HiC_scaffold_56_73829443 "0/0" "0/0" "0/0"
## HiC_scaffold_56_76060304 "1|1" "1|1" "0/0"
## HiC_scaffold_57_25306408 "1/1" "0/1" "1/1"
## HiC_scaffold_57_29222385 "0|1" "0/0" NA
## HiC_scaffold_57_29592432 "0/1" NA "0/1"
## HiC_scaffold_57_31472698 "1|1" "0/1" "0/0"
## HiC_scaffold_57_32371742 "0/0" "0/0" "0/1"
## HiC_scaffold_57_36495072 "0/1" "1/1" NA
## HiC_scaffold_57_37286264 "0/0" "1/1" "0/0"
## HiC_scaffold_57_38537415 "0/0" "1|1" "0/0"
## HiC_scaffold_57_45438854 "1|1" "1|2" "2|2"
## HiC_scaffold_57_52856874 "0/0" "0/0" "0/0"
## HiC_scaffold_57_53575355 "0/0" "1/1" "1/1"
## HiC_scaffold_57_55856783 "0/0" "1/1" "1/1"
## HiC_scaffold_58_1362614 "1/1" "0/1" NA
## HiC_scaffold_58_1432845 "1/1" "1|1" "0/0"
## HiC_scaffold_58_1541720 "0/0" "0/0" "0/0"
## HiC_scaffold_58_2777120 NA "1/1" "0/0"
## HiC_scaffold_58_2973169 "1/1" "1/1" "1/1"
## HiC_scaffold_58_3243043 "0/0" NA "0/0"
## HiC_scaffold_58_4035282 "0/0" "0/0" "1/1"
## HiC_scaffold_58_5442157 "0/1" "1|1" "0/1"
## HiC_scaffold_58_8004631 "0/0" "0/0" "0/0"
## HiC_scaffold_58_8058998 "0/0" "1|1" "0/0"
## HiC_scaffold_58_8932837 "0/0" "1/1" "0/0"
## HiC_scaffold_58_14814944 "0/1" "1/1" "0/0"
## HiC_scaffold_58_15639988 "0/0" "0/1" "0/1"
## HiC_scaffold_58_15707198 "1/1" "1/1" "1/1"
## HiC_scaffold_58_15707258 "1/1" "1/1" "1/1"
## HiC_scaffold_58_15710623 "0/1" "1/1" "0/0"
## HiC_scaffold_58_19155063 NA "0/0" "1|1"
## HiC_scaffold_58_20224050 "0/0" "0/0" "1/1"
## HiC_scaffold_58_38475355 "1/1" "0/0" "1/1"
## HiC_scaffold_59_3979055 "0/0" "1/1" "0/0"
## HiC_scaffold_59_5071810 "1|1" "0/0" "1|1"
## HiC_scaffold_59_5349936 "0/0" "0/0" "0/0"
## HiC_scaffold_59_5350114 "0/0" "0/0" "1/1"
## HiC_scaffold_59_7738302 "0/1" "0/1" "0/0"
## HiC_scaffold_59_7738351 "0/1" "0/1" "0/0"
## HiC_scaffold_59_7958561 "0/0" "0/0" "0/0"
## HiC_scaffold_59_9273798 "0/1" "0/1" "0/0"
## HiC_scaffold_59_50928099 "0/0" "0/1" "0/1"
## HiC_scaffold_59_52960060 "0/1" "1|1" "0/0"
## HiC_scaffold_6_10569023 "0/0" "0/0" "0/1"
## HiC_scaffold_6_10711445 "1/1" "0/1" "1/1"
## HiC_scaffold_6_13209200 "0/0" "1|1" "0/1"
## HiC_scaffold_6_13213107 "0/0" NA NA
## HiC_scaffold_6_13311684 "1|1" "0/0" NA
## HiC_scaffold_6_15670783 "0/0" "1|1" "1|1"
## HiC_scaffold_6_19111232 "1/1" "0/0" "1|1"
## HiC_scaffold_6_32805498 "0/1" "1/1" NA
## HiC_scaffold_6_38793174 "1|1" "1|1" "0/0"
## HiC_scaffold_6_41092101 "0/0" "0/0" "1|1"
## HiC_scaffold_6_41342933 "0/1" "1/1" "0/0"
## HiC_scaffold_6_47594508 "0/0" "1/1" "0/0"
## HiC_scaffold_60_70878 "1|1" "1|1" "1|1"
## HiC_scaffold_60_99549 "0/1" "0/0" "0|1"
## HiC_scaffold_60_201823 "1/1" "1/1" "0/0"
## HiC_scaffold_60_712969 "1|1" "1|1" "0/0"
## HiC_scaffold_60_744783 "0|1" "0/0" "0/0"
## HiC_scaffold_60_744788 "0/0" "1|1" "0/0"
## HiC_scaffold_60_22142128 "0/1" "0/0" "0/0"
## HiC_scaffold_60_27599770 "1/1" "1/1" NA
## HiC_scaffold_60_30608878 "0/0" "1|1" "0/0"
## HiC_scaffold_60_32657324 "0/0" "0/0" NA
## HiC_scaffold_60_32672580 NA "1/1" "1/1"
## HiC_scaffold_60_38856893 "0/1" "0/0" NA
## HiC_scaffold_60_39028335 "1/1" "1/1" "1/1"
## HiC_scaffold_60_40296869 "0/1" "0/0" "0/0"
## HiC_scaffold_60_42775723 "1/1" "0/0" "1/1"
## HiC_scaffold_60_44687906 "1|1" "0/1" "1/1"
## HiC_scaffold_60_44804601 "1/1" "0/0" NA
## HiC_scaffold_60_53696867 "0|1" "0|1" NA
## HiC_scaffold_60_53696868 "0|1" "0|1" NA
## HiC_scaffold_60_60651515 "0|1" "1/1" "0/0"
## HiC_scaffold_60_70678462 "1|1" "1/1" "1/1"
## HiC_scaffold_61_2205328 "0|1" "0/0" "0/1"
## HiC_scaffold_61_2491706 "1/1" "1/1" "1/1"
## HiC_scaffold_61_4009916 "0/0" "0/0" NA
## HiC_scaffold_61_4062917 "0/0" "0/0" NA
## HiC_scaffold_61_4122763 "1|1" "1|1" NA
## HiC_scaffold_61_4216461 "1/1" "1/1" "0/0"
## HiC_scaffold_61_4325053 "0/0" "0/1" "0/1"
## HiC_scaffold_61_9004838 "1|1" "0/1" "1|1"
## HiC_scaffold_61_14635083 "0/0" "0|1" "0/0"
## HiC_scaffold_62_1128608 "1/1" "1/1" "1/1"
## HiC_scaffold_62_11335200 "0/0" "0/0" "0|0"
## HiC_scaffold_62_18828476 "1/1" NA "1/1"
## HiC_scaffold_62_21548870 "1|1" "1|1" "1|1"
## HiC_scaffold_62_23103274 "0/0" "0/0" "0/0"
## HiC_scaffold_62_25793456 "1/1" "1/1" NA
## HiC_scaffold_62_25887474 "0/0" "0/1" "0/0"
## HiC_scaffold_62_28516096 "0/0" "0/0" "0|1"
## HiC_scaffold_62_28516099 "0/0" "0/0" "0|1"
## HiC_scaffold_62_28818725 "1|1" "1|1" "0/0"
## HiC_scaffold_62_28818729 "0/0" "0/0" NA
## HiC_scaffold_62_45207353 "0/0" "0/0" "0/1"
## HiC_scaffold_63_3092269 "1/1" "1/1" "0/0"
## HiC_scaffold_63_3977940 "0/0" "0/0" "1/1"
## HiC_scaffold_63_4084937 NA "0/0" "0/0"
## HiC_scaffold_63_4196326 "0/0" "0/1" NA
## HiC_scaffold_63_6262453 "0/1" "0/0" "1/1"
## HiC_scaffold_63_6350204 "1/1" "1/1" "1/1"
## HiC_scaffold_63_6458794 "0/1" "0/0" "0|1"
## HiC_scaffold_64_9162978 "0/2" "0/0" "0/0"
## HiC_scaffold_64_16876561 "0/0" "0/0" "1|1"
## HiC_scaffold_64_17543009 "0/0" "1/1" "0/0"
## HiC_scaffold_64_18925356 "0/1" "1/1" "0/0"
## HiC_scaffold_64_19133050 "0/0" "1|1" "1|1"
## HiC_scaffold_64_19627769 "0/0" "1|1" "1|1"
## HiC_scaffold_64_20477250 "0/1" "1/1" "1/1"
## HiC_scaffold_64_22816677 "0/1" "1/1" "0/1"
## HiC_scaffold_64_22954654 "0|1" "1|1" NA
## HiC_scaffold_64_22954658 "0|1" "1|1" NA
## HiC_scaffold_64_22954682 "0|1" "0/1" NA
## HiC_scaffold_65_6829971 "0/0" "1/1" "0/0"
## HiC_scaffold_65_8071102 "0/0" "1|1" "0/0"
## HiC_scaffold_65_9023979 "0/0" "0/0" "1/1"
## HiC_scaffold_65_9839671 "0/0" "0/1" "0/0"
## HiC_scaffold_65_10404778 "0|1" "0/0" NA
## HiC_scaffold_65_11327791 "1/1" "1/1" "1/1"
## HiC_scaffold_65_11332104 "1/1" "0/0" "1/1"
## HiC_scaffold_65_34823822 "0/0" "0/0" "0/0"
## HiC_scaffold_65_51418017 "1/1" "1/1" NA
## HiC_scaffold_65_54053979 "1|1" "1|1" "1|1"
## HiC_scaffold_65_57110875 "0/1" "0/0" "0|1"
## HiC_scaffold_66_15615363 "1/1" "0/1" "0/0"
## HiC_scaffold_66_15672090 "0/0" "1/1" "0/1"
## HiC_scaffold_66_17903445 "0|1" "0/0" "1|1"
## HiC_scaffold_66_18298629 "0/0" "1|1" "1|1"
## HiC_scaffold_66_19730676 "0/0" "0/0" NA
## HiC_scaffold_66_23688768 "0/1" "0/1" "1/1"
## HiC_scaffold_66_26614535 "0/0" "0/1" "0/0"
## HiC_scaffold_66_27445665 "1/1" "0/1" NA
## HiC_scaffold_66_29457165 "0/1" "0/0" "1|1"
## HiC_scaffold_66_29457180 "1/1" "1/1" "1|1"
## HiC_scaffold_66_30116287 "1|1" "1|1" NA
## HiC_scaffold_66_31603503 "0/0" "1|1" "1|1"
## HiC_scaffold_66_33261460 "1/1" "1/1" NA
## HiC_scaffold_66_34138981 "0/0" "0/0" "1/1"
## HiC_scaffold_66_34139020 "1/1" "1|1" "0/0"
## HiC_scaffold_66_34142862 "0/0" "0/0" "1/1"
## HiC_scaffold_67_1404390 "1/1" "0/0" "1/1"
## HiC_scaffold_67_28493665 "0/0" "0/0" "0/0"
## HiC_scaffold_67_30243885 "0/1" "0/0" NA
## HiC_scaffold_67_31511806 "0/0" "0|1" "1|1"
## HiC_scaffold_67_34638092 "0/1" "0/1" NA
## HiC_scaffold_67_37534720 "0/0" "0/0" "0/0"
## HiC_scaffold_67_39679546 "1/1" "1/1" "1/1"
## HiC_scaffold_67_39854918 "0/0" "0/0" "0/1"
## HiC_scaffold_67_39860738 "0/1" "0/0" "1/1"
## HiC_scaffold_67_40331656 "1/1" "0/0" "1/1"
## HiC_scaffold_67_40824747 "1|1" "1|1" NA
## HiC_scaffold_68_3438132 "1|1" "1|1" "1|1"
## HiC_scaffold_68_3438133 "1|1" "1|1" "1|1"
## HiC_scaffold_68_11206902 "0/0" "0/0" "0/0"
## HiC_scaffold_68_32770607 "0/0" "1|1" "0/0"
## HiC_scaffold_68_34016823 "0/0" "0/1" "2|2"
## HiC_scaffold_68_34020019 "1/1" "1/1" NA
## HiC_scaffold_68_40296057 "0/0" "0|1" "0|1"
## HiC_scaffold_68_40296059 "0/0" "0|1" "0|1"
## HiC_scaffold_68_65001879 "0/1" "1/1" "1/1"
## HiC_scaffold_69_23311147 NA "0/0" "0/0"
## HiC_scaffold_69_27351303 "1/1" "0/0" NA
## HiC_scaffold_69_29437208 "1|1" "1|1" "0|1"
## HiC_scaffold_69_33699381 "1|1" "1|1" "1|1"
## HiC_scaffold_69_40194698 "1/1" "1/1" "1/1"
## HiC_scaffold_69_48273575 "0/0" "1/1" "0/1"
## HiC_scaffold_69_48348026 "0/1" "1/1" "0/0"
## HiC_scaffold_69_48348034 "1/1" "0/0" "0/0"
## HiC_scaffold_69_49563252 "0/1" "0/0" "0/1"
## HiC_scaffold_69_49593952 "1/1" "0/1" "1/1"
## HiC_scaffold_69_49859037 "0/0" "0/0" "1|1"
## HiC_scaffold_69_51271238 "0/0" "0/0" "1/1"
## HiC_scaffold_69_51529836 NA "0/0" "0/0"
## HiC_scaffold_69_57313650 "1/1" "0/1" "1/1"
## HiC_scaffold_69_57359194 "1/1" "0/0" "0/0"
## HiC_scaffold_6951_523650 "0/0" "0/0" NA
## HiC_scaffold_6951_897126 "0/0" "1|1" "0/0"
## HiC_scaffold_6951_1134482 "1|1" "0/0" "1|1"
## HiC_scaffold_6951_2484960 "0/0" "0/0" "1/1"
## HiC_scaffold_6951_3301273 "1|1" "1|1" NA
## HiC_scaffold_6951_3314609 "0/1" "0/0" "1/1"
## HiC_scaffold_6951_3945993 "0/0" "0/0" "1|1"
## HiC_scaffold_6958_218293 "0/0" "2/2" "0|1"
## HiC_scaffold_6958_449143 "0/0" "1/1" "1/1"
## HiC_scaffold_7_351023 "0/0" "0/0" "0/1"
## HiC_scaffold_7_488024 NA "0/0" "1|1"
## HiC_scaffold_7_492663 "0/0" "1/1" "0/1"
## HiC_scaffold_7_693567 "0|1" "1|1" "0/0"
## HiC_scaffold_7_2379128 "0/1" "0/1" "0/1"
## HiC_scaffold_7_3087721 "1/1" "1/1" "1/1"
## HiC_scaffold_7_3394880 "1/1" "0/0" "1/1"
## HiC_scaffold_7_22247106 "0/1" "0/1" "0/0"
## HiC_scaffold_70_4632611 "0/0" "0|1" "0|1"
## HiC_scaffold_70_14042778 "0/0" "1/1" "0/0"
## HiC_scaffold_71_410844 "0|1" "0/0" "0/0"
## HiC_scaffold_71_1753451 NA "0/1" "1/1"
## HiC_scaffold_71_2283682 "0/1" "0/0" "0/0"
## HiC_scaffold_71_3439685 "0/0" "0|1" "1/2"
## HiC_scaffold_71_17850462 "0/0" "1|1" "0/0"
## HiC_scaffold_71_20588314 "0/0" "1/1" "0/0"
## HiC_scaffold_71_25465351 "0|1" "0|1" "1|1"
## HiC_scaffold_71_25465352 "0|1" "0|1" "1|1"
## HiC_scaffold_71_26356062 "0/0" "0/0" "1/1"
## HiC_scaffold_72_11785096 "0/1" "1/1" "1/1"
## HiC_scaffold_72_17285854 "0/1" "1/1" "0/0"
## HiC_scaffold_72_23704999 "0/0" "0/0" "1/1"
## HiC_scaffold_72_24465318 "0/0" "0/1" "0/0"
## HiC_scaffold_72_30457277 "0/0" "0/1" "0/0"
## HiC_scaffold_72_32068649 "1/1" NA "1/1"
## HiC_scaffold_72_35058295 "0/0" "0/0" "1/1"
## HiC_scaffold_72_36024997 "0/1" "0/0" "0/1"
## HiC_scaffold_72_37135067 "0/0" "0/0" NA
## HiC_scaffold_72_38410141 "1/1" "1/1" "1/1"
## HiC_scaffold_72_38448056 "0/0" "0/0" "0/0"
## HiC_scaffold_72_41412511 "1/1" "1/1" NA
## HiC_scaffold_73_2192629 "1|1" NA "1|1"
## HiC_scaffold_73_2920208 "1|1" "0/0" "0/0"
## HiC_scaffold_73_4522493 "1/1" NA "1/1"
## HiC_scaffold_73_4748625 "0/0" "0/1" NA
## HiC_scaffold_73_5839336 "1/1" "1/1" "1/1"
## HiC_scaffold_73_9338582 "1/1" "1/1" NA
## HiC_scaffold_73_27393859 "0/1" "0/1" "0|1"
## HiC_scaffold_74_14235619 "1/1" "0/1" "1/1"
## HiC_scaffold_74_14515598 "1/1" "1/1" "0/1"
## HiC_scaffold_74_15116121 "0/1" "0/0" "0|1"
## HiC_scaffold_74_17233613 "1/1" "1/1" "1/1"
## HiC_scaffold_74_17725340 "1|1" "1|1" NA
## HiC_scaffold_74_18418135 "0/0" "1|1" "1|1"
## HiC_scaffold_74_18418138 "0/0" "1|1" "1|1"
## HiC_scaffold_74_21254425 "1/1" "1/1" "1/1"
## HiC_scaffold_74_22261065 "0/0" "0/0" "0/1"
## HiC_scaffold_74_47132519 "1|1" "0/0" "0/0"
## HiC_scaffold_74_50979096 "1/1" "0/1" NA
## HiC_scaffold_74_51060549 "0/1" "1/1" NA
## HiC_scaffold_74_53256803 "0/0" "0/0" "1/1"
## HiC_scaffold_74_55464169 "0/1" "0/0" "1/1"
## HiC_scaffold_74_55515512 "0/0" "1/1" "1/1"
## HiC_scaffold_74_55999260 "0/0" "0/0" "0/0"
## HiC_scaffold_74_57404902 "1|1" "1|1" "0/0"
## HiC_scaffold_74_58181927 "1|1" "0/0" "0/0"
## HiC_scaffold_74_58198600 "0/0" "1/1" "1/1"
## HiC_scaffold_74_63060195 "1/1" NA "0/0"
## HiC_scaffold_75_5345466 "0/1" "0/1" "0/0"
## HiC_scaffold_75_5346522 "0/0" "0/0" "0/0"
## HiC_scaffold_75_5346535 "0/0" "0/0" "0/0"
## HiC_scaffold_75_9850973 "1|1" "0/0" "0/0"
## HiC_scaffold_76_27149820 "0/1" "0|0" "0/0"
## HiC_scaffold_76_31582908 NA "0/1" "0/1"
## HiC_scaffold_76_31792815 NA "0/0" NA
## HiC_scaffold_76_35352820 "0/0" "1|1" "0/0"
## HiC_scaffold_76_57782171 NA "0/1" "1/1"
## HiC_scaffold_76_59862401 "1|1" "0|1" "0/0"
## HiC_scaffold_76_61095594 "0/1" "1|1" "0/0"
## HiC_scaffold_76_65496128 "0/0" "1/1" "0/0"
## HiC_scaffold_76_68965847 "1/1" "1/1" "0/0"
## HiC_scaffold_76_68966411 "1/1" "1/1" "0/0"
## HiC_scaffold_76_69823482 "0|1" NA "0/0"
## HiC_scaffold_76_73343841 "1/1" "1/1" "0/0"
## HiC_scaffold_77_3598274 "1|1" "0/0" "0/0"
## HiC_scaffold_77_6982137 "0/0" "0/0" "0/0"
## HiC_scaffold_77_11021994 "1/1" "1/1" "0/1"
## HiC_scaffold_77_13608165 "0/0" "1/1" "1/1"
## HiC_scaffold_77_16888594 "1/1" "0/1" "0/1"
## HiC_scaffold_77_16888623 "0/1" "0/0" "0/0"
## HiC_scaffold_77_16889448 "0/0" "0/0" "0/1"
## HiC_scaffold_77_39784685 "0/0" "1|1" "0/0"
## HiC_scaffold_77_44375866 "0/0" "0/0" NA
## HiC_scaffold_77_45385370 "1/1" "0/1" "1/1"
## HiC_scaffold_78_5719919 "1/1" "0/0" "1/1"
## HiC_scaffold_78_11353297 "0|1" "0/0" "0/0"
## HiC_scaffold_78_27316392 "0/0" "1/1" NA
## HiC_scaffold_78_48124809 "2/2" "0/2" "0/0"
## HiC_scaffold_78_48124826 "1/1" "0/1" "1/1"
## HiC_scaffold_78_48126176 "1/1" "0/1" "1/1"
## HiC_scaffold_78_48279096 "0/0" "0/0" "0/0"
## HiC_scaffold_78_48434558 "0/1" "0/0" "1|1"
## HiC_scaffold_78_49759181 "1|1" "0|1" "0|1"
## HiC_scaffold_78_49759192 "1|1" "0|1" "0/0"
## HiC_scaffold_78_49759215 "0/1" "1/1" "0/1"
## HiC_scaffold_78_51364025 "0/0" "0/1" "1/1"
## HiC_scaffold_78_55395445 "0|1" "0/1" "1/1"
## HiC_scaffold_78_59610866 NA "0/0" "0/1"
## HiC_scaffold_78_62136661 "0/0" "1/1" NA
## HiC_scaffold_79_1643780 "0/0" "0|1" "0|1"
## HiC_scaffold_79_2519178 "1/1" "1/1" "1/1"
## HiC_scaffold_79_2858100 "1/1" "1/1" "0/0"
## HiC_scaffold_79_3922454 NA "0/0" "0/1"
## HiC_scaffold_79_4127878 "0/0" "1|1" "1|1"
## HiC_scaffold_79_4543693 NA "0/1" "0/1"
## HiC_scaffold_79_11507678 "0/0" "0/1" "1/1"
## HiC_scaffold_79_12618812 "0/0" "0/0" "1/1"
## HiC_scaffold_79_14185404 "1|1" "1|1" NA
## HiC_scaffold_79_17120237 "0/1" "1/1" "0/0"
## HiC_scaffold_79_17120254 "0/1" "1/1" "0/1"
## HiC_scaffold_79_35551507 "1|1" "0/0" "1/1"
## HiC_scaffold_79_35551543 "1/1" "0/0" "1/1"
## HiC_scaffold_79_38927423 "0/0" "0|1" "0/0"
## HiC_scaffold_79_42623307 "1|1" "0|1" "1|1"
## HiC_scaffold_79_43179786 "1/1" "1/1" "0/0"
## HiC_scaffold_79_43180099 "0/1" "0/1" "0/0"
## HiC_scaffold_79_43828078 "0|1" "0|1" NA
## HiC_scaffold_79_43872513 "0/0" "0/0" "0/1"
## HiC_scaffold_79_44627215 "1/1" "1/1" "1/1"
## HiC_scaffold_79_50772769 NA "0/0" "1|1"
## HiC_scaffold_79_55468575 "0/0" "0/1" "1/1"
## HiC_scaffold_79_55816114 "0/0" "0/1" "0/0"
## HiC_scaffold_79_59915784 "0/0" "1/1" NA
## HiC_scaffold_79_60165298 "1|1" "0/0" "0|1"
## HiC_scaffold_79_60165305 "1|1" "0/0" "0/0"
## HiC_scaffold_79_69145556 "0/0" "0/0" NA
## HiC_scaffold_79_70208305 "0|1" "0|1" "0|1"
## HiC_scaffold_79_73412292 "1/1" "0/0" "0/0"
## HiC_scaffold_79_73416663 "1|1" "0/0" "0|1"
## HiC_scaffold_79_73416688 "1|1" "0/0" "0/0"
## HiC_scaffold_79_76863102 "0/0" "0/1" NA
## HiC_scaffold_79_81279649 "0|1" "0/0" "0/0"
## HiC_scaffold_79_81499990 "1/1" "0/0" NA
## HiC_scaffold_79_82319836 "1|1" "0/0" "0/1"
## HiC_scaffold_79_82319849 "1|1" "1/1" "0/0"
## HiC_scaffold_79_83163707 "0/1" "0/0" "0/0"
## HiC_scaffold_79_86283512 "0/0" "1/1" "0/0"
## HiC_scaffold_79_87123758 "0/0" "1|1" "1|1"
## HiC_scaffold_79_88362889 "0/0" NA "0/1"
## HiC_scaffold_79_88599431 "0/1" "0/0" "1/1"
## HiC_scaffold_79_89322919 "0|1" "0/1" "1/1"
## HiC_scaffold_79_89331918 "0/0" "0/0" NA
## HiC_scaffold_79_91340958 "0/0" NA "0|1"
## HiC_scaffold_8_13649836 "0/0" NA "0/0"
## HiC_scaffold_8_13650752 "0|1" "1|1" "0|1"
## HiC_scaffold_8_23818233 "1/1" "1/1" "1/1"
## HiC_scaffold_8_24123972 "1|1" "1|1" "1|1"
## HiC_scaffold_8_24230791 "0/0" "1|1" "1|1"
## HiC_scaffold_8_24588423 NA "0/0" "0/0"
## HiC_scaffold_8_25348483 NA "0/0" "0/1"
## HiC_scaffold_8_25421933 "0/1" "0/1" "0/0"
## HiC_scaffold_8_25772942 "0/0" "0/1" "0/1"
## HiC_scaffold_8_26289589 "0/0" "1|1" "0/0"
## HiC_scaffold_8_27602740 "0/0" "1|1" "0/0"
## HiC_scaffold_8_28159063 "0/1" "1/1" "1/1"
## HiC_scaffold_8_30829320 "0/0" "0/0" "0/0"
## HiC_scaffold_8_31044084 "0/1" "0/1" "0/0"
## HiC_scaffold_8_31415507 "0/0" "0/0" "1|1"
## HiC_scaffold_8_32594682 "0/0" "1|1" "0/0"
## HiC_scaffold_80_3617847 "1/1" "0/1" "1/1"
## HiC_scaffold_80_5758183 "1|1" NA "1|1"
## HiC_scaffold_80_6760006 "1|1" "0|1" NA
## HiC_scaffold_80_6760037 "1/1" "0/0" "0/0"
## HiC_scaffold_80_7772622 NA "1/1" NA
## HiC_scaffold_80_7919533 NA "0/1" "0|2"
## HiC_scaffold_80_8110052 "0/0" "0/0" "0/1"
## HiC_scaffold_80_8193366 "1/1" "0/0" "1/1"
## HiC_scaffold_80_8625784 "1/1" "0/1" "0/0"
## HiC_scaffold_80_8912846 "1/1" "0/0" "0/0"
## HiC_scaffold_80_9544102 "0/1" "0/0" "0/0"
## HiC_scaffold_80_10770701 "0/0" "0/0" "0/1"
## HiC_scaffold_80_11590146 "0/0" "0/0" "0/0"
## HiC_scaffold_80_16953653 "0/1" "0/1" "0/1"
## HiC_scaffold_80_18938832 NA "1|1" "0/0"
## HiC_scaffold_80_19015946 "1/1" "1/1" "0/1"
## HiC_scaffold_80_19404001 "0/1" "1/1" "1/1"
## HiC_scaffold_80_25346708 "1|1" NA "1|1"
## HiC_scaffold_80_37479851 NA "0|1" "0/0"
## HiC_scaffold_80_37507516 "0/0" "0/1" "1/1"
## HiC_scaffold_81_1187192 "0/0" "0/0" "0/0"
## HiC_scaffold_81_2689826 "1|1" "1|1" "0/0"
## HiC_scaffold_81_2690751 "0/0" "1|1" "0/0"
## HiC_scaffold_81_6614123 "1/1" "1/1" "0/0"
## HiC_scaffold_81_7836855 "0/0" "0/1" "0/0"
## HiC_scaffold_81_10334868 "0/1" "0/1" "0/0"
## HiC_scaffold_81_10458752 "0/0" "1/1" NA
## HiC_scaffold_81_17515538 "0/1" "1/1" "1|1"
## HiC_scaffold_81_40271282 "0/0" "0|1" "0/0"
## HiC_scaffold_81_40271294 "1/1" "0|1" "1/1"
## HiC_scaffold_81_41096427 "0/0" "0|1" "1|1"
## HiC_scaffold_81_41096444 "0/1" "0|1" "1|1"
## HiC_scaffold_81_43820595 "0/1" "1/1" "0/0"
## HiC_scaffold_81_43820732 "0/0" "1/1" "0/0"
## HiC_scaffold_81_43854278 "0/0" "0/1" "0/1"
## HiC_scaffold_81_44804862 "0/0" "1/1" "1/1"
## HiC_scaffold_81_45063428 "1|1" "1|1" "0/0"
## HiC_scaffold_81_45950590 NA "0/1" "0/0"
## HiC_scaffold_81_46714752 "0|1" "1|1" "1|1"
## HiC_scaffold_81_46714759 "0|1" "1|1" "0/1"
## HiC_scaffold_81_47170397 "1|1" "1|1" "1|1"
## HiC_scaffold_81_47628201 "0|1" "0/0" "0/0"
## HiC_scaffold_81_48105216 "0/0" NA "0/0"
## HiC_scaffold_81_48932070 "1/1" "0/0" "0/0"
## HiC_scaffold_81_54050146 "1/1" "1/1" "1/1"
## HiC_scaffold_82_5672063 "1/1" "0/0" "1/1"
## HiC_scaffold_82_8796823 "1|1" "0/1" "0/0"
## HiC_scaffold_82_13450959 "1/1" NA "0/0"
## HiC_scaffold_82_26144442 "0/1" NA "0/0"
## HiC_scaffold_82_26147011 "1|1" "1|1" "1|1"
## HiC_scaffold_82_28907834 NA "0/1" "1/1"
## HiC_scaffold_82_34413793 "0/1" "0|1" "1|1"
## HiC_scaffold_82_34413800 "0/0" "0|1" "0/0"
## HiC_scaffold_82_36173035 "0/1" "0/1" "0/0"
## HiC_scaffold_82_40539273 "1/1" "0/0" "0/1"
## HiC_scaffold_82_41470256 NA "0/1" "0/1"
## HiC_scaffold_83_23993605 "0/1" "0/1" "0/1"
## HiC_scaffold_83_35035961 "0/0" "0/1" "0/0"
## HiC_scaffold_83_43423618 "1|1" "0/0" "0/0"
## HiC_scaffold_83_46920654 NA "0/1" "0/0"
## HiC_scaffold_83_46934197 "0/0" "1|1" "0/1"
## HiC_scaffold_84_356301 "0/1" "0/0" "0/0"
## HiC_scaffold_84_5761817 "0/0" "0/1" "0/1"
## HiC_scaffold_84_5769022 "1|1" "0/1" "0/0"
## HiC_scaffold_84_6288130 "0/1" "1|1" "0/0"
## HiC_scaffold_84_6288141 "1|1" "1|1" "1/1"
## HiC_scaffold_84_6288147 "1|1" "1|1" "0/0"
## HiC_scaffold_84_7069238 NA NA "1|1"
## HiC_scaffold_84_9131309 "1/1" "0/1" "0/0"
## HiC_scaffold_84_10148442 "0/1" "0/1" "0/1"
## HiC_scaffold_84_14659391 "0/1" "1/1" "1/1"
## HiC_scaffold_84_16302752 "0/1" "1/1" "2|2"
## HiC_scaffold_84_18463244 "1/1" "1/1" "1/1"
## HiC_scaffold_84_22909575 "1|1" "0/0" "0/0"
## HiC_scaffold_84_29275266 "0/0" NA "0/0"
## HiC_scaffold_84_31184610 "1/1" "1/1" "1/1"
## HiC_scaffold_84_33093169 "0/0" "0|1" "0/0"
## HiC_scaffold_84_37675180 "0/0" "0/1" "1/1"
## HiC_scaffold_84_39501814 "0/0" "0/0" "1|1"
## HiC_scaffold_84_50169438 "0/0" "0|1" "0|1"
## HiC_scaffold_84_50169445 "0/0" "0|1" "0|1"
## HiC_scaffold_84_51231025 "0/0" "0/1" "1/1"
## HiC_scaffold_85_9792207 "1|1" "0/0" "0/0"
## HiC_scaffold_85_11784233 "0/0" "1|1" "0/1"
## HiC_scaffold_85_11911022 "0/0" "0/1" "0/1"
## HiC_scaffold_85_11911142 NA "0/1" "0/1"
## HiC_scaffold_85_11913828 "0/1" "1|1" "0|1"
## HiC_scaffold_85_11913831 "0/1" "0/0" "0|1"
## HiC_scaffold_85_12353081 NA "1/1" "1/1"
## HiC_scaffold_85_12414551 "0/0" "0/0" "0/1"
## HiC_scaffold_85_13043967 "1|1" "1|1" "0|1"
## HiC_scaffold_85_13221888 "1/1" "1/1" "1/1"
## HiC_scaffold_85_27008863 "0/1" "1/1" "1/1"
## HiC_scaffold_85_28992264 "1|1" "0|1" "0|1"
## HiC_scaffold_85_28992268 "1|1" "1/1" "0|1"
## HiC_scaffold_85_64310850 "1|1" "1|1" "1|1"
## HiC_scaffold_85_65135112 "0|2" "0/0" "0/0"
## HiC_scaffold_85_65563529 "0/1" "0/0" "0/0"
## HiC_scaffold_86_1949664 "0/1" "0/0" "0/0"
## HiC_scaffold_86_5340423 "1/1" "0/0" "0/1"
## HiC_scaffold_86_5483991 "1|1" "0/0" "0/0"
## HiC_scaffold_86_8928469 "1|1" "1|1" "1|1"
## HiC_scaffold_86_23727924 NA "0/1" "0/0"
## HiC_scaffold_86_24825818 "1|1" "1|1" "1|1"
## HiC_scaffold_86_25333718 "0/1" "0/1" "0/1"
## HiC_scaffold_86_29668168 "0/0" "0/0" "0/0"
## HiC_scaffold_86_30914243 "1|1" "0/0" "0/0"
## HiC_scaffold_86_32040320 "1|1" "0|1" "0|1"
## HiC_scaffold_86_32040329 "1|1" "0|1" "0|1"
## HiC_scaffold_86_32125061 "0/1" "0/1" "0/0"
## HiC_scaffold_86_32144758 "0/0" "1/1" "1/1"
## HiC_scaffold_86_32153692 "0/0" "1/1" "0/0"
## HiC_scaffold_86_32534129 NA "0/0" "0/0"
## HiC_scaffold_86_32605768 "0/0" "1|1" "0/0"
## HiC_scaffold_86_36355399 "1/1" "0/0" "1/1"
## HiC_scaffold_86_36357265 "1|1" "0/0" "1/1"
## HiC_scaffold_87_1253643 "0/0" "0/1" "1/1"
## HiC_scaffold_87_2137958 "0/0" "0/1" "0/1"
## HiC_scaffold_87_3980100 "0/0" "1/1" "1/1"
## HiC_scaffold_87_4395923 "0|1" "0/1" "1/1"
## HiC_scaffold_87_5489328 "0/0" "0/0" "1|1"
## HiC_scaffold_87_6300441 "0/1" "0/1" "1/1"
## HiC_scaffold_87_16306904 "1/1" "0/1" "1/1"
## HiC_scaffold_87_44780945 "0/0" "0/0" "1|1"
## HiC_scaffold_88_5584327 "0/1" "0/1" "1/1"
## HiC_scaffold_88_7104630 "0/0" "1|1" "0/0"
## HiC_scaffold_88_7104631 "0/0" "1|1" "0/0"
## HiC_scaffold_88_7104638 "1|1" "1|1" "1|1"
## HiC_scaffold_88_7104639 "0/1" "1|1" "0/0"
## HiC_scaffold_88_7104640 "0/1" "1|1" "1|1"
## HiC_scaffold_88_7479340 "0/0" "0/0" "0/0"
## HiC_scaffold_88_8773607 "1|1" "1|1" "1|1"
## HiC_scaffold_88_9883678 "0/0" "1|1" "1|1"
## HiC_scaffold_88_10878718 "0/1" "0/0" "0/0"
## HiC_scaffold_88_19365116 "1/1" "1/1" "1/1"
## HiC_scaffold_88_20477349 "1/1" "0/0" "1/1"
## HiC_scaffold_88_20557885 "0/1" "0/0" "1|1"
## HiC_scaffold_89_675045 "0/0" "0/0" "0/1"
## HiC_scaffold_89_2815845 NA "0/0" NA
## HiC_scaffold_89_2843940 "0/1" "0/1" "0/0"
## HiC_scaffold_89_3018830 "1|1" "1/1" "1/1"
## HiC_scaffold_89_13745506 "1/1" "0/0" "0/1"
## HiC_scaffold_89_30006907 "1/1" "1/1" "1/1"
## HiC_scaffold_89_36509388 "1|1" "0/0" "1|1"
## HiC_scaffold_89_38703735 "0/0" "0/1" "0/1"
## HiC_scaffold_89_38764895 "1/1" "1/1" "0/0"
## HiC_scaffold_89_42052609 "1/1" "0/1" "0/1"
## HiC_scaffold_89_42054991 "1/1" "1/1" "0/1"
## HiC_scaffold_89_44306958 "1/1" "0/1" "0|1"
## HiC_scaffold_89_44338206 "1/1" "0/0" "0/0"
## HiC_scaffold_89_45298973 "1/1" "1/1" "0/0"
## HiC_scaffold_9_3529921 NA "1/1" "0/0"
## HiC_scaffold_9_5660454 "1|1" "0/0" "0/0"
## HiC_scaffold_9_5660461 "1|1" "1/1" "1/1"
## HiC_scaffold_9_5854070 "1/1" "0/0" "1/1"
## HiC_scaffold_9_6142415 NA "0|1" "1|1"
## HiC_scaffold_9_6142436 NA "0|1" "1|1"
## HiC_scaffold_9_6143781 "1/1" "0/1" NA
## HiC_scaffold_9_6654825 "1/1" NA "0/1"
## HiC_scaffold_9_7094545 "0/1" "1|1" "1|1"
## HiC_scaffold_9_7100208 "0/0" "1|1" NA
## HiC_scaffold_9_7109988 "0/0" "0/1" "0/0"
## HiC_scaffold_9_7111922 "0/0" "1|1" "0/1"
## HiC_scaffold_9_8235781 "1/1" "0/1" "0/1"
## HiC_scaffold_9_8279558 "1/1" "1/1" "1/1"
## HiC_scaffold_9_15679481 "1|1" "0/0" "1|1"
## HiC_scaffold_9_18082611 NA "0/0" "0/0"
## HiC_scaffold_9_18090830 "1/1" "0/0" "0/1"
## HiC_scaffold_9_30240531 "1/1" "1|1" "1/1"
## HiC_scaffold_90_10418696 "0/1" "0/0" "0/0"
## HiC_scaffold_90_11470224 "0/0" "1/1" "1/1"
## HiC_scaffold_90_13593319 "0/1" "1/1" "0/0"
## HiC_scaffold_90_16260161 "0|1" "1|1" "0/0"
## HiC_scaffold_90_22325499 "0/1" "0/1" "0/0"
## HiC_scaffold_90_23574204 "0/0" "1/1" "0/1"
## HiC_scaffold_90_23609908 "0/1" "0/0" "0/0"
## HiC_scaffold_90_23623078 "1|1" "1|1" "1|1"
## HiC_scaffold_90_23626883 "0/0" "1/1" "0/1"
## HiC_scaffold_90_23812663 "1/1" NA "1/1"
## HiC_scaffold_90_25939283 "0/1" "0/0" "1/1"
## HiC_scaffold_90_25985714 "0/1" "1/1" "0/0"
## HiC_scaffold_90_30751272 NA "0/0" "0/1"
## HiC_scaffold_90_31232025 "1|1" "1|1" "1|1"
## HiC_scaffold_90_31245699 "0/0" "0/0" "0/1"
## HiC_scaffold_90_31527975 "0/0" "0/1" "0/0"
## HiC_scaffold_90_31546172 "0/0" "0/1" "0/0"
## HiC_scaffold_90_38511996 "0/0" "0|1" "0|1"
## HiC_scaffold_90_38511999 "0/0" "0|1" "0|1"
## HiC_scaffold_90_38517279 "0/1" "1/1" "1/1"
## HiC_scaffold_90_40624104 "1/1" "0/0" "0/0"
## HiC_scaffold_91_5644765 "1|1" "0/0" "1|1"
## HiC_scaffold_91_5867214 "0|1" "0|1" NA
## HiC_scaffold_91_5867226 "0|1" "0|1" NA
## HiC_scaffold_91_7704263 "0/0" "1|1" "0/0"
## HiC_scaffold_91_7871360 "1/1" "0/1" "0/1"
## HiC_scaffold_91_8538014 "1/1" "1/1" "1/1"
## HiC_scaffold_91_13230485 "0|1" "1|1" "1|1"
## HiC_scaffold_91_28696118 "1/1" "0/1" "1/1"
## HiC_scaffold_91_28696625 "0/0" "1|1" "1|1"
## HiC_scaffold_91_42177482 "1|1" "1|1" "0/0"
## HiC_scaffold_91_46813640 NA "0|1" "2|2"
## HiC_scaffold_92_23783035 "0/1" "0/0" "0/0"
## HiC_scaffold_92_23783036 "0/1" "0/0" "0/0"
## HiC_scaffold_92_24712793 "0/0" "0/0" NA
## HiC_scaffold_92_28698258 "0/0" "0/0" "0/0"
## HiC_scaffold_92_40691582 "0/0" "0/0" NA
## HiC_scaffold_92_43967712 "0/0" "0/0" "1/1"
## HiC_scaffold_92_47147572 "1|1" "1|1" "0/0"
## HiC_scaffold_92_49042714 "1|1" "0|1" "0|1"
## HiC_scaffold_92_49042715 "1|1" "0|1" "0|1"
## HiC_scaffold_92_53634002 "0/1" NA "1/1"
## HiC_scaffold_92_58211868 "0/0" "1|1" "1|1"
## HiC_scaffold_92_60114155 NA NA "0/0"
## HiC_scaffold_92_63603483 "0/0" "1|1" "1|1"
## HiC_scaffold_92_64797225 "0/0" "0/2" "0/0"
## HiC_scaffold_92_68367476 "0/0" "0|2" "0/0"
## HiC_scaffold_93_1912167 "0/1" "0/1" "0/0"
## HiC_scaffold_93_2485978 "0/0" "1/1" "0/0"
## HiC_scaffold_93_3227638 "0/0" "0/1" "0/0"
## HiC_scaffold_93_3227641 "1|1" "0|1" "1|1"
## HiC_scaffold_93_13971208 "1/1" "0/0" "1/1"
## HiC_scaffold_93_13987080 "0/0" "0/1" "0/0"
## HiC_scaffold_93_21125468 "0/1" "0/0" "1/1"
## HiC_scaffold_93_21845293 "0/0" "0/1" "0/0"
## HiC_scaffold_93_21845310 "1|1" "0/0" "0|1"
## HiC_scaffold_93_21846342 "0/0" "0/0" "0/0"
## HiC_scaffold_93_21846356 "0/0" "0/0" NA
## HiC_scaffold_93_22589723 "0/1" "1/1" "1/1"
## HiC_scaffold_93_22619278 "1/1" "1/1" "1/1"
## HiC_scaffold_93_22631258 "1|1" "1|1" "0|1"
## HiC_scaffold_93_22631266 "1|1" "1|1" "0|1"
## HiC_scaffold_94_3110102 "0/1" "0/0" NA
## HiC_scaffold_94_3205919 "1|1" "1/1" "0/1"
## HiC_scaffold_94_9023846 "0/1" "0/1" "0/1"
## HiC_scaffold_94_11572820 "1/1" "1/1" "1/1"
## HiC_scaffold_94_12368532 "0/0" "0/0" "0/0"
## HiC_scaffold_94_42179418 "1/1" "0/0" "0/0"
## HiC_scaffold_94_42179519 "0/0" "1/1" "0/0"
## HiC_scaffold_94_51646206 "0/0" "0/2" "0/0"
## HiC_scaffold_94_52781289 "1/1" "0/0" NA
## HiC_scaffold_94_53790035 "0/0" "0/0" "0/1"
## HiC_scaffold_94_53792738 "0/0" "0/0" "1/1"
## HiC_scaffold_94_56768905 "0/0" "0|1" "1|1"
## HiC_scaffold_946_81276 "1/1" "1/1" NA
## HiC_scaffold_95_3189690 "0/0" "0/0" "1/1"
## HiC_scaffold_95_4397298 "1/1" "1|1" "1|1"
## HiC_scaffold_95_9469157 "0|1" "0|1" "1|1"
## HiC_scaffold_95_10641411 "0/1" NA "0/0"
## HiC_scaffold_95_10949821 "0/1" NA "1/1"
## HiC_scaffold_95_12993394 "1|1" "0|1" "1|1"
## HiC_scaffold_95_15515793 "1|1" "1|1" "0/0"
## HiC_scaffold_95_15608785 "0/0" "1|1" "0|1"
## HiC_scaffold_95_15609137 "0/0" "1/1" "0/1"
## HiC_scaffold_95_16295316 "0/0" "0/0" "0/0"
## HiC_scaffold_95_22656165 "0/0" "1|1" "0|1"
## HiC_scaffold_95_25885727 "1/1" "1/1" NA
## HiC_scaffold_96_10460019 "0/0" "0/0" "0/0"
## HiC_scaffold_96_27155785 "1/1" "1/1" NA
## HiC_scaffold_96_37939434 "0|1" "0|1" "0/1"
## HiC_scaffold_96_51115048 NA "0/0" "1/1"
## HiC_scaffold_96_51116511 "0/0" NA "0/1"
## HiC_scaffold_96_51915040 "1|1" "0/0" "1|1"
## HiC_scaffold_96_52681287 "0/0" "0/0" NA
## HiC_scaffold_96_53276519 "1/1" "0/1" "0/0"
## HiC_scaffold_97_1736926 "0|1" "0/0" "1|1"
## HiC_scaffold_97_1736994 "1|1" "0/0" "1|1"
## HiC_scaffold_97_3863543 "1/1" "1/1" "1/1"
## HiC_scaffold_97_4200445 "1/1" "0/0" "1/1"
## HiC_scaffold_97_4799162 NA "0/1" "1/1"
## HiC_scaffold_97_5027892 "1/1" "0/1" "1/1"
## HiC_scaffold_97_8007933 "0/0" "0|1" "1|1"
## HiC_scaffold_97_17997210 "0/0" "1|1" "0/0"
## HiC_scaffold_97_18604647 "1/1" "1/1" "1/1"
## HiC_scaffold_97_20239636 NA "1/1" "0/0"
## HiC_scaffold_98_15154096 "0/1" "0|1" "0/0"
## HiC_scaffold_98_22342667 "0|1" "1/1" "0/0"
## HiC_scaffold_98_22634293 NA "1|1" "1|1"
## HiC_scaffold_98_22634294 NA "1|1" "1|1"
## HiC_scaffold_98_22721138 "1|1" "1|1" "1/1"
## HiC_scaffold_98_22869378 "1/1" "1/1" "0/0"
## HiC_scaffold_98_24108405 "1|1" "1|1" "0/0"
## HiC_scaffold_98_27359592 "1|1" "0/1" "1|1"
## HiC_scaffold_98_28549834 NA "0/0" "0/0"
## HiC_scaffold_98_28867520 "1/1" NA "1|1"
## HiC_scaffold_98_28867524 "0|2" NA "1|1"
## HiC_scaffold_98_29431717 "0/1" "0/0" "1|1"
## HiC_scaffold_98_29675109 "0/1" NA "0/1"
## HiC_scaffold_99_1163244 "1/1" "0/0" "0/0"
## HiC_scaffold_99_1451611 "0/0" "0/0" "1/1"
## HiC_scaffold_99_2021961 "1|1" "0/0" "0/0"
## HiC_scaffold_99_5134392 NA "0/1" "0/0"
## HiC_scaffold_99_5239109 "0/1" "1/1" "1/1"
## HiC_scaffold_99_6917738 "1|1" "1|1" "1|1"
## HiC_scaffold_99_11221970 "0/0" "0/0" "0/0"
## HiC_scaffold_99_25982503 "0/1" "1/1" "1/1"
## Tank_15_Crab_1 Tank_15_Crab_2 Tank_15_Crab_3
## HiC_scaffold_1_2523394 "1/1" "0/1" "0/0"
## HiC_scaffold_1_2542157 "0/1" NA "0/0"
## HiC_scaffold_1_2647806 "1/1" "1/1" "0/0"
## HiC_scaffold_1_2970226 "0/0" "1|1" "0/0"
## HiC_scaffold_1_3329447 "0/0" "0/0" "0/0"
## HiC_scaffold_1_3795100 "0|1" "0/0" "1|1"
## HiC_scaffold_10_2221345 "0/0" "1/1" "0/0"
## HiC_scaffold_10_2299490 "1|1" NA "0/0"
## HiC_scaffold_10_2565301 "0/0" NA "0/0"
## HiC_scaffold_10_3864355 "0/1" "1/1" "0/1"
## HiC_scaffold_10_4319900 "1|1" "0|1" "0/0"
## HiC_scaffold_10_4319907 "1|1" "0|1" "0/0"
## HiC_scaffold_10_5404579 "1/1" "0/0" "1/1"
## HiC_scaffold_10_5843373 NA "0/0" "0/0"
## HiC_scaffold_100_854947 "0/0" NA "0/0"
## HiC_scaffold_100_1070817 "0/0" "0/0" "1/1"
## HiC_scaffold_100_2002094 "0|1" "0/0" NA
## HiC_scaffold_100_2002097 "0|1" "0/0" NA
## HiC_scaffold_100_2010331 "1|1" "1|1" "1|1"
## HiC_scaffold_100_5186498 NA "1/1" "1/1"
## HiC_scaffold_100_5828477 "0/0" "1/1" "0/0"
## HiC_scaffold_100_6470419 "0/0" "1|1" "0|1"
## HiC_scaffold_100_6739225 NA "0/0" "0/0"
## HiC_scaffold_100_6739258 "1|1" "0/0" "0/0"
## HiC_scaffold_100_6739264 "1|1" "0/0" "0/0"
## HiC_scaffold_100_6907177 "0/0" "1/1" "1|1"
## HiC_scaffold_100_8384481 "0|1" "0/0" "1|1"
## HiC_scaffold_100_8384495 "0|1" "0/0" "1|1"
## HiC_scaffold_100_9451470 "1/1" NA "0/2"
## HiC_scaffold_100_10464574 "0/0" "1/1" "0/0"
## HiC_scaffold_100_11934792 "0/0" "0/0" "1/1"
## HiC_scaffold_100_11980177 "1|1" "1/1" "1/1"
## HiC_scaffold_100_18465760 "0|1" "0/0" "0/0"
## HiC_scaffold_100_18465762 "0|1" "0/0" "0/0"
## HiC_scaffold_100_18466205 "2/2" "0/0" "0/0"
## HiC_scaffold_100_31738115 "0/0" "1/1" "1/1"
## HiC_scaffold_100_44227362 "1/1" "0/0" "0/0"
## HiC_scaffold_101_12808961 "0/0" "1|1" "0/0"
## HiC_scaffold_101_13897149 "0/0" "0/1" "1/1"
## HiC_scaffold_101_18337279 "1/1" "0/0" "1/1"
## HiC_scaffold_101_20800167 NA "0/1" "1/1"
## HiC_scaffold_102_2260041 "0/0" "1/1" "0/0"
## HiC_scaffold_102_8734519 "0/1" NA "1|1"
## HiC_scaffold_102_10233999 "1|1" NA NA
## HiC_scaffold_102_11446042 "0/0" "0/0" "0/1"
## HiC_scaffold_102_15918694 NA "0/1" "0/0"
## HiC_scaffold_102_15935667 "1|1" "0/0" "0/1"
## HiC_scaffold_102_17442643 "1/1" NA NA
## HiC_scaffold_102_17608969 NA "0/0" "0/0"
## HiC_scaffold_102_20180185 "0/1" "0/0" "0/1"
## HiC_scaffold_102_24788723 "0/0" NA "0/0"
## HiC_scaffold_102_25423729 "1|1" NA "1|1"
## HiC_scaffold_102_39755142 "1/1" NA "1/1"
## HiC_scaffold_102_52046978 "0/0" "1/1" NA
## HiC_scaffold_1027_34152 "1/1" "0/0" "0/1"
## HiC_scaffold_103_601715 "0/0" "1/1" "0/1"
## HiC_scaffold_103_2891384 "0/0" "0/0" "0/0"
## HiC_scaffold_103_8191270 "0/0" "0/0" "0/0"
## HiC_scaffold_103_9521272 "1/1" "1/1" "1/1"
## HiC_scaffold_103_14768909 "1|1" NA "1|1"
## HiC_scaffold_103_19312119 "0|1" "1|1" "1|1"
## HiC_scaffold_103_21284866 "0/0" "0/0" "0/0"
## HiC_scaffold_103_31428453 "0/0" NA "0/0"
## HiC_scaffold_103_42567396 "0/1" "0/0" "0/1"
## HiC_scaffold_103_45921571 NA "0|1" "0|1"
## HiC_scaffold_103_45921573 NA "0|1" "0|1"
## HiC_scaffold_103_49592022 "0/1" "0/1" NA
## HiC_scaffold_103_49620132 "1|1" "0/0" "0/1"
## HiC_scaffold_103_50440915 "0/0" "0/1" "0/0"
## HiC_scaffold_103_51944137 "1/1" "0/1" "1/1"
## HiC_scaffold_103_54308582 "0/1" NA "0/0"
## HiC_scaffold_103_54424067 "1|1" "0/0" "1|1"
## HiC_scaffold_103_56932900 "1/1" "1/1" NA
## HiC_scaffold_103_57470264 NA "1|1" "1|1"
## HiC_scaffold_104_7771140 "1/1" "1/1" "1/1"
## HiC_scaffold_104_9103028 "0/0" "0|1" "0/0"
## HiC_scaffold_104_10633168 NA "0/0" "0/0"
## HiC_scaffold_104_18917031 "0/0" NA "0/0"
## HiC_scaffold_104_20851902 "0/0" "1/1" "0/0"
## HiC_scaffold_104_24451803 "0/1" "0/1" "0/0"
## HiC_scaffold_104_28597688 "1/1" NA "0/1"
## HiC_scaffold_104_40927999 "1/1" "0/0" "0/0"
## HiC_scaffold_104_46490074 "0/0" NA "1/1"
## HiC_scaffold_104_49759053 "0/0" "1/1" "1/1"
## HiC_scaffold_104_57267896 "1/1" "0/0" "0/1"
## HiC_scaffold_104_62570010 "0/0" "1/1" "0/1"
## HiC_scaffold_11_32804173 "0/0" NA "1/1"
## HiC_scaffold_11_34516508 "0/0" "1/1" NA
## HiC_scaffold_11_35332996 "1/1" "1/1" "1/1"
## HiC_scaffold_11_35904027 "0/1" "1/1" "1/1"
## HiC_scaffold_11_41539793 "1|1" "1|1" "1/1"
## HiC_scaffold_11_41604080 "1|1" "1/1" "1|1"
## HiC_scaffold_11_42855323 "0/0" "0/0" "1/1"
## HiC_scaffold_11_45339409 "0/0" "1|1" "0/1"
## HiC_scaffold_11_45339410 "0/0" "1|1" "0/1"
## HiC_scaffold_11_47544035 "1/1" "1/1" "1/1"
## HiC_scaffold_12_7515164 "0/0" "0/1" "0/1"
## HiC_scaffold_12_12640100 "0/1" NA "1/1"
## HiC_scaffold_12_12826705 "1|1" "0/0" "0/0"
## HiC_scaffold_12_14899285 NA "0/0" "0/1"
## HiC_scaffold_12_17465672 "1|1" "0/0" "1|1"
## HiC_scaffold_12_22770710 "0/1" "0/0" "1|1"
## HiC_scaffold_12_32318964 NA "1|1" "1|1"
## HiC_scaffold_12_35136373 "0/0" "0/0" "0/0"
## HiC_scaffold_12_40687860 "0/0" "0/0" "0/0"
## HiC_scaffold_13_2938168 "1/1" "1/1" "1/1"
## HiC_scaffold_13_20350974 "1/1" "1/1" "0/0"
## HiC_scaffold_13_27759554 "1/1" "0/0" "0/0"
## HiC_scaffold_13_28146828 "0/0" "0/0" NA
## HiC_scaffold_13_28146830 "0/0" "0/0" NA
## HiC_scaffold_13_28925343 NA NA "1/1"
## HiC_scaffold_13_31913129 "1/1" "0/0" NA
## HiC_scaffold_13_32078924 "0/0" "1|1" "1|1"
## HiC_scaffold_13_33864805 "1/1" "0/0" "1/1"
## HiC_scaffold_13_34892542 "1/1" NA "1/1"
## HiC_scaffold_13_34893103 "0/0" "0/1" "0/0"
## HiC_scaffold_13_35762551 "0|1" "0/0" "0|1"
## HiC_scaffold_13_35881745 "1/1" NA "0/1"
## HiC_scaffold_13_35881749 "0/0" NA "0/1"
## HiC_scaffold_14_3843214 NA "0/0" "1/1"
## HiC_scaffold_14_25884262 "2|2" "0/0" "0/2"
## HiC_scaffold_14_27050415 "1/1" "1/1" "0/1"
## HiC_scaffold_14_27118495 "1/1" "1/1" "1/1"
## HiC_scaffold_14_27277222 "0|2" "0/0" "0/0"
## HiC_scaffold_14_29215814 "0/0" "0/1" "1|1"
## HiC_scaffold_15_2460398 "0/0" "0/0" "0|1"
## HiC_scaffold_15_2462980 "0/0" "0/0" "0/1"
## HiC_scaffold_15_2467289 "1/1" "1/1" "1/1"
## HiC_scaffold_15_5669141 "1/1" "1/1" "1|1"
## HiC_scaffold_15_13700694 "0/0" "0/0" "0/0"
## HiC_scaffold_15_17825275 "1|1" "0|1" "0|1"
## HiC_scaffold_15_19938475 NA "0/0" "1/1"
## HiC_scaffold_15_23865956 "1|1" "1|1" "1|1"
## HiC_scaffold_15_28837774 "0/0" "0/0" "0|1"
## HiC_scaffold_15_28837810 "1/1" "1/1" "0/0"
## HiC_scaffold_15_28837823 "0/1" "1/1" "0/0"
## HiC_scaffold_15_28837835 "1/1" "1|1" "0|1"
## HiC_scaffold_15_28837841 "0/0" "1|1" "0|1"
## HiC_scaffold_15_28837854 "1/1" "1/1" "0/1"
## HiC_scaffold_15_34827832 "0/0" NA "0/0"
## HiC_scaffold_15_34893807 "0/0" "1/1" NA
## HiC_scaffold_15_35327348 "1/1" "0/0" "1/1"
## HiC_scaffold_15_42161112 "1|1" "0/0" "0/0"
## HiC_scaffold_15_42164926 "1|1" "1|1" "0|1"
## HiC_scaffold_15_42164946 "1/1" "1/1" "1/1"
## HiC_scaffold_15_46289572 "0/0" "1/1" "1/1"
## HiC_scaffold_15_50591576 "0/0" "1|1" "1|1"
## HiC_scaffold_15_50759128 "0/1" "0/0" "1/1"
## HiC_scaffold_15_51188336 "0/0" "1|1" "1|1"
## HiC_scaffold_15_54726640 "1/1" "1/1" "0/0"
## HiC_scaffold_15_54788235 "1/1" "1/1" "0/0"
## HiC_scaffold_15_56162375 "1|1" "0/0" "1|1"
## HiC_scaffold_15_61091106 "0/0" "1/1" "0/0"
## HiC_scaffold_15_61464359 "1|1" NA "1/1"
## HiC_scaffold_15_61510386 "1/1" "1/1" "0/1"
## HiC_scaffold_15_62309788 "0/0" "0/0" "0/0"
## HiC_scaffold_15_62309793 "0/0" "0/0" "0/0"
## HiC_scaffold_15_62771254 "0/0" "0/0" "1/1"
## HiC_scaffold_15_63493927 "1/1" "1/1" "1/1"
## HiC_scaffold_15_64997502 "0/0" "1/1" "0/0"
## HiC_scaffold_15_65007865 "1/1" "0|1" "1|1"
## HiC_scaffold_15_65007879 "0/0" "0/0" "1|1"
## HiC_scaffold_15_66038529 "0/0" NA "0/1"
## HiC_scaffold_15_69811281 "0/1" NA NA
## HiC_scaffold_16_14205925 "1/1" "0/0" "0/0"
## HiC_scaffold_16_30404047 "0/0" "0/1" NA
## HiC_scaffold_16_57413288 "0/0" NA "0/0"
## HiC_scaffold_16_63687578 "0/0" "0/0" "0/0"
## HiC_scaffold_16_74138787 "1/1" NA "0/0"
## HiC_scaffold_16_74140106 NA "1/1" "0/0"
## HiC_scaffold_16_76276015 NA "0/0" "0/0"
## HiC_scaffold_17_11390873 "0/1" "1/1" "0/0"
## HiC_scaffold_17_12551128 "1/1" NA "1/1"
## HiC_scaffold_17_16615612 "1/1" "0/0" "0/0"
## HiC_scaffold_17_18838093 NA "0/0" "0/0"
## HiC_scaffold_17_22801072 "1/1" NA "0/1"
## HiC_scaffold_17_23788599 "0/0" "0/0" "0/0"
## HiC_scaffold_17_29383895 "0/1" "0/0" "0/0"
## HiC_scaffold_17_29618771 "0/1" "0/0" "0/1"
## HiC_scaffold_17_29976139 NA "0/0" NA
## HiC_scaffold_17_31107213 "1/1" "1/1" NA
## HiC_scaffold_17_32493792 NA "0/0" "0/0"
## HiC_scaffold_17_33732050 "0/0" "0/0" "0/1"
## HiC_scaffold_17_33801314 "0/0" "0/0" "1|1"
## HiC_scaffold_17_34081889 "1/1" "1/1" "0/1"
## HiC_scaffold_18_227565 "0/0" "1/1" "0/1"
## HiC_scaffold_18_1213486 "1/1" "1/1" "1/1"
## HiC_scaffold_18_1701312 "0/0" "0/0" NA
## HiC_scaffold_18_3506437 "0/0" "1/1" "0/1"
## HiC_scaffold_18_6304978 "0/1" "0/0" "1/1"
## HiC_scaffold_18_6351493 "0/0" "1/1" "1/1"
## HiC_scaffold_18_6358009 "0|1" "0/0" "1/1"
## HiC_scaffold_18_10770701 "0/0" NA "0/1"
## HiC_scaffold_18_13342858 "1/1" "1/1" "1/1"
## HiC_scaffold_18_20045832 "1|1" "0/0" "0/0"
## HiC_scaffold_18_22682683 NA NA "0/0"
## HiC_scaffold_18_26337790 "0/1" "0/0" "0/0"
## HiC_scaffold_18_48929148 NA "0/0" "1|1"
## HiC_scaffold_18_51490626 "1/1" "1/1" "1/1"
## HiC_scaffold_18_53723137 "0/0" "1|1" "0/1"
## HiC_scaffold_18_54496637 "0/0" "0/0" "0/0"
## HiC_scaffold_18_55294388 NA "0|1" "0|1"
## HiC_scaffold_19_279726 "0/1" "1/1" "0/0"
## HiC_scaffold_19_6426572 "1/1" NA "0/0"
## HiC_scaffold_19_6575887 NA "1|1" "1|1"
## HiC_scaffold_19_7755254 NA "0/0" "1/1"
## HiC_scaffold_19_9301421 "0/0" NA "1/1"
## HiC_scaffold_19_9357388 "0/0" NA "0/0"
## HiC_scaffold_19_9778841 "1/1" "1/1" "1/1"
## HiC_scaffold_19_10928976 NA "0/0" "0|1"
## HiC_scaffold_19_10928980 NA "0/0" "0|1"
## HiC_scaffold_19_10928982 NA "1|1" "0|1"
## HiC_scaffold_19_11106347 "1|1" NA "1|1"
## HiC_scaffold_19_11590139 "1/1" "0/0" NA
## HiC_scaffold_19_11665300 "0/1" "1/1" "1/1"
## HiC_scaffold_19_14793640 "1/1" "0/0" "0/0"
## HiC_scaffold_19_22112743 "0/1" NA "0/1"
## HiC_scaffold_19_25473671 "0/1" "1/1" "1/1"
## HiC_scaffold_19_25473692 "1/1" "1/1" "0/1"
## HiC_scaffold_19_28110829 "0/1" "1|1" "1|1"
## HiC_scaffold_19_28465002 "1|1" "1/1" "1/1"
## HiC_scaffold_19_28465167 "0/0" "0/1" "0/0"
## HiC_scaffold_19_30106869 "0/0" "1|1" "0/0"
## HiC_scaffold_19_52538858 "1|1" "1/1" "0/0"
## HiC_scaffold_19_52596196 "1|1" "0/0" "1|1"
## HiC_scaffold_19_53482993 NA "0/1" "0/1"
## HiC_scaffold_19_54312637 "1/1" "0/1" "0/0"
## HiC_scaffold_19_59345841 "0/0" "0/0" "1|1"
## HiC_scaffold_2_3296144 "1|1" "1|1" "1|1"
## HiC_scaffold_2_3418589 "0/0" "1/1" "1/1"
## HiC_scaffold_2_3864060 "1|1" "1/1" "0/1"
## HiC_scaffold_2_4104755 "0/0" "0/0" "0|2"
## HiC_scaffold_2_4104758 "0/0" "0/0" "0|2"
## HiC_scaffold_2_8316721 "0/1" "0/0" "0/0"
## HiC_scaffold_2_9098999 "0/1" "0/0" "0/0"
## HiC_scaffold_2_10457537 NA "0/0" "0/0"
## HiC_scaffold_2_19048125 "0/0" "0/0" "1/1"
## HiC_scaffold_2_21748201 "1/1" "1/1" "1/1"
## HiC_scaffold_2_33187764 "0|1" "0/0" "0/0"
## HiC_scaffold_2_33187770 "0|1" "0/0" "0/0"
## HiC_scaffold_2_33187959 "0/1" "0/0" "0/0"
## HiC_scaffold_2_41603929 "0/0" "0/1" "1/1"
## HiC_scaffold_2_52233191 "0|1" NA "0/1"
## HiC_scaffold_2_52400748 "0|1" "1/1" "1/1"
## HiC_scaffold_2_52403793 "1|1" "1|1" "1|1"
## HiC_scaffold_2_52799130 "0/1" "1/1" "0/1"
## HiC_scaffold_20_10332897 "0/1" "0|0" "0/1"
## HiC_scaffold_20_17198418 "1|1" NA "0/0"
## HiC_scaffold_20_17915398 "1|1" "0/0" "1|1"
## HiC_scaffold_20_18872955 "0/1" "0/1" "0/0"
## HiC_scaffold_20_19055301 "1/1" NA "1/1"
## HiC_scaffold_20_19150094 "1/1" "1/1" "0/0"
## HiC_scaffold_20_20651022 "1|1" "0/1" "1|1"
## HiC_scaffold_20_22651296 "0/0" NA "1/1"
## HiC_scaffold_21_2009156 "0/0" "1|1" "0/0"
## HiC_scaffold_21_2435648 "0/0" "0/1" "1/1"
## HiC_scaffold_21_7164210 "0/0" "0/0" "0/0"
## HiC_scaffold_21_9786512 "0/1" "0/0" "1/1"
## HiC_scaffold_21_12424922 "0|1" "1/1" "1/1"
## HiC_scaffold_21_17966833 "1/1" "1/1" NA
## HiC_scaffold_21_19025429 "0/1" "0/0" "0/0"
## HiC_scaffold_21_20058318 "0/0" NA "1/1"
## HiC_scaffold_21_20562855 NA "0/0" NA
## HiC_scaffold_21_20661860 NA NA "0/0"
## HiC_scaffold_21_20895395 "0/0" "0|1" "0|1"
## HiC_scaffold_21_21158811 "1|1" "2|2" "1|1"
## HiC_scaffold_21_22250857 "1/1" "1/1" "0|1"
## HiC_scaffold_21_22250866 NA "1/1" "0|1"
## HiC_scaffold_21_22257737 "1/1" "1/1" "1/1"
## HiC_scaffold_21_22644667 "0/0" NA "1|1"
## HiC_scaffold_21_22644673 "0/0" NA "1|1"
## HiC_scaffold_21_22666888 NA "0/0" NA
## HiC_scaffold_21_23905416 NA "0/0" "1|1"
## HiC_scaffold_21_23981651 "0/0" NA "1|1"
## HiC_scaffold_21_24287068 "0/0" "1|1" "0/0"
## HiC_scaffold_21_30798434 "1|1" "1|1" "0/0"
## HiC_scaffold_21_35006232 "0/1" "1/1" "1/1"
## HiC_scaffold_21_35779294 "1/1" "0/1" "0/1"
## HiC_scaffold_22_124910 "0/0" NA NA
## HiC_scaffold_22_751023 NA "1|1" "0/1"
## HiC_scaffold_22_1042644 "1|1" "0/1" "1|1"
## HiC_scaffold_22_1044708 "1/1" "0/0" "1/1"
## HiC_scaffold_22_2174911 "1|1" "0/0" "1/1"
## HiC_scaffold_22_3431122 "0/1" "0/0" "1|1"
## HiC_scaffold_22_3446787 "0/0" "0/0" "1|1"
## HiC_scaffold_22_3451756 "0/0" "0/1" "1/1"
## HiC_scaffold_22_3720435 "1/1" NA "1/1"
## HiC_scaffold_22_4065466 "0/0" NA "0/0"
## HiC_scaffold_22_4739889 "1|1" NA "1|1"
## HiC_scaffold_22_4918263 "0/0" "1|1" "1|1"
## HiC_scaffold_22_5750008 "1/1" "1/1" "1/1"
## HiC_scaffold_22_5769942 "0/0" "0/0" NA
## HiC_scaffold_22_28264522 "1|1" "1|1" NA
## HiC_scaffold_22_28265115 "0/0" "1/1" "0/0"
## HiC_scaffold_22_29205851 "1/1" "1/1" "1/1"
## HiC_scaffold_22_29822340 "0/1" "1/1" "1/1"
## HiC_scaffold_22_30797357 "1/1" "1/1" "1/1"
## HiC_scaffold_22_32042610 "0/0" "1|1" "1|1"
## HiC_scaffold_23_11215327 "0/0" "1/1" "1/1"
## HiC_scaffold_23_27081333 "0/0" "0/0" "0/1"
## HiC_scaffold_23_28672255 "1/1" "0/0" "0/1"
## HiC_scaffold_23_29218828 "1|1" "0|1" "1/1"
## HiC_scaffold_23_32528768 "1|1" "0/0" NA
## HiC_scaffold_23_32669383 "1/1" NA NA
## HiC_scaffold_23_33199663 "0/0" "1/1" "0/0"
## HiC_scaffold_23_33245843 "0/0" "0/0" NA
## HiC_scaffold_23_40824545 NA "0/0" "1|1"
## HiC_scaffold_23_41504669 "0/0" "0/0" "0/1"
## HiC_scaffold_24_16622654 "1|1" NA "0/1"
## HiC_scaffold_24_16622681 "1|1" NA "0/1"
## HiC_scaffold_24_19851560 NA "1/1" NA
## HiC_scaffold_24_20590563 "1/1" NA "1/1"
## HiC_scaffold_24_27745754 "0/1" "0/1" NA
## HiC_scaffold_24_28763699 "1|1" "1|1" "0/1"
## HiC_scaffold_24_28763703 "1|1" "0/1" "1|1"
## HiC_scaffold_25_4135969 "0/0" "0/0" "0/0"
## HiC_scaffold_25_4201677 NA "0/1" "0/1"
## HiC_scaffold_25_5872831 "0/0" NA "0/1"
## HiC_scaffold_25_6879627 "1/1" "0/1" "0/0"
## HiC_scaffold_25_8172813 "1/1" "1/1" "1/1"
## HiC_scaffold_25_9969507 "0/0" "1|1" "0/0"
## HiC_scaffold_25_10691336 "1/1" "1/1" "0/0"
## HiC_scaffold_25_21286462 "1|1" "0/0" "0/0"
## HiC_scaffold_26_4086662 "0/0" "0/0" "0/0"
## HiC_scaffold_26_7539671 "0/1" NA "1|1"
## HiC_scaffold_26_8348511 "0/0" "0/0" "1/1"
## HiC_scaffold_26_9043748 "0/0" NA "0/0"
## HiC_scaffold_26_9045655 "0/0" NA "0/0"
## HiC_scaffold_26_11253181 "0/0" "0/0" "0/0"
## HiC_scaffold_26_17828344 "1/1" "0/0" "1/1"
## HiC_scaffold_26_17932520 NA NA "1/1"
## HiC_scaffold_26_17941459 "1/1" "0/0" "0/0"
## HiC_scaffold_26_17960877 "1/1" "0/1" "1/1"
## HiC_scaffold_26_18284041 "1|1" "0/0" "0/1"
## HiC_scaffold_26_18288701 "1|1" NA "1|1"
## HiC_scaffold_26_18294422 NA "1|1" "1/1"
## HiC_scaffold_26_21307365 "0/0" "0/0" "1/1"
## HiC_scaffold_26_22159924 NA NA "1/1"
## HiC_scaffold_26_22161535 NA "0/0" "1/1"
## HiC_scaffold_26_24794176 "1/1" "1/1" "1/1"
## HiC_scaffold_26_28538113 "1|1" "1|1" "0/0"
## HiC_scaffold_26_29031357 "1/1" "1|1" "1/1"
## HiC_scaffold_26_29163462 "0/1" "1/1" "0/0"
## HiC_scaffold_26_42631018 "1|1" "0/0" "0/0"
## HiC_scaffold_26_42634814 "0/0" "0/1" "1/1"
## HiC_scaffold_26_43483190 NA NA "0/1"
## HiC_scaffold_26_49955889 "1/1" "1/1" "0/1"
## HiC_scaffold_26_58342510 NA "0|1" "1|1"
## HiC_scaffold_27_1496120 "1|1" "0/0" "0/0"
## HiC_scaffold_27_1947057 "0/0" "0/0" "0/0"
## HiC_scaffold_27_2359058 "1|1" "0/0" "0/0"
## HiC_scaffold_27_2699645 "1/1" "0/1" "0/0"
## HiC_scaffold_27_4425475 "0/0" "0/0" "0|1"
## HiC_scaffold_27_7539469 "0/0" "2|2" "1|1"
## HiC_scaffold_27_7777122 "0/1" "0/0" "0/0"
## HiC_scaffold_27_16657070 "0/0" "0/0" "1/1"
## HiC_scaffold_27_24539255 "0|1" "0/0" "1|1"
## HiC_scaffold_27_34642359 "1|1" "1|1" "1|1"
## HiC_scaffold_27_34647277 "0/0" "0/0" "0|1"
## HiC_scaffold_27_35380535 "1/1" "1/1" "1/1"
## HiC_scaffold_27_35383230 "1|1" NA "0/0"
## HiC_scaffold_28_21261390 "0/0" "0/0" "0/0"
## HiC_scaffold_28_24490442 "0/0" "0/0" "0/0"
## HiC_scaffold_28_25601927 "1/1" NA "0/0"
## HiC_scaffold_28_31793968 "0/0" "0/0" "0|1"
## HiC_scaffold_28_32126687 "0/0" "0/0" "1|1"
## HiC_scaffold_28_34779518 "1/1" "1/1" "1/1"
## HiC_scaffold_28_36042491 "1/1" "1/1" "0/0"
## HiC_scaffold_28_36692361 "0/1" NA "0/0"
## HiC_scaffold_28_38672993 "0/1" "0/1" "0/0"
## HiC_scaffold_28_39640526 NA "1/1" "0/1"
## HiC_scaffold_28_40169242 "1/1" "0/1" "1/1"
## HiC_scaffold_28_41059640 "1|1" "1|1" "1|1"
## HiC_scaffold_28_42514830 "1/1" "1/1" "1/1"
## HiC_scaffold_28_42601570 "0/1" "0/0" "0/0"
## HiC_scaffold_28_42601585 "0/0" "0/1" NA
## HiC_scaffold_28_43018803 "0/1" "1/1" "1/1"
## HiC_scaffold_28_43036165 "0/0" "0/1" "1/1"
## HiC_scaffold_29_344317 "1/1" "1/1" "1/1"
## HiC_scaffold_29_3811176 "0/1" "0/1" "0/0"
## HiC_scaffold_29_6073993 "1/1" "0|1" "0/0"
## HiC_scaffold_29_6415222 "0/0" "0/0" "0/2"
## HiC_scaffold_29_8224424 NA NA "0/0"
## HiC_scaffold_29_11153624 "0/0" "1/1" "0/1"
## HiC_scaffold_29_11153712 "0/0" "1/1" "0/0"
## HiC_scaffold_29_11167966 "0/1" "0/0" NA
## HiC_scaffold_29_11491468 "0/1" "0/0" "0/0"
## HiC_scaffold_29_12103558 NA NA "1/1"
## HiC_scaffold_29_14279322 "0/0" "0/0" "0/1"
## HiC_scaffold_29_14913907 "0|1" "0/0" "0|1"
## HiC_scaffold_29_16378276 "1/1" "1/1" "1/1"
## HiC_scaffold_29_20635937 "0/1" "0/1" "1/1"
## HiC_scaffold_29_20636787 "1/1" NA "0/1"
## HiC_scaffold_29_22560215 "1|1" "0/0" "1/1"
## HiC_scaffold_29_22561144 "0/1" NA "0/0"
## HiC_scaffold_29_24017849 "0/0" NA "1/1"
## HiC_scaffold_29_31603590 "0/1" "0/0" "1/1"
## HiC_scaffold_3_21670751 "0/1" "0/0" "0/0"
## HiC_scaffold_3_24747014 "0/0" NA "0/1"
## HiC_scaffold_3_27861792 "0/0" "0/0" "1/1"
## HiC_scaffold_3_28057869 "1/1" "0/0" "0/1"
## HiC_scaffold_3_28441436 "1/1" "1/1" "0/1"
## HiC_scaffold_3_28694380 "0/0" "1|1" "1|1"
## HiC_scaffold_3_31361023 "0/0" "1/1" "0/1"
## HiC_scaffold_3_31960572 "0/0" "1|1" "1|1"
## HiC_scaffold_3_32157169 NA "0/0" "0/0"
## HiC_scaffold_3_32159152 "0/1" "0/1" "0/1"
## HiC_scaffold_3_34124237 "1/1" "0/0" "0/0"
## HiC_scaffold_30_14199802 "1/1" "0/0" "1/1"
## HiC_scaffold_30_16052331 "1|1" "1/1" "1/1"
## HiC_scaffold_30_19914075 "0/1" "1/1" "1/1"
## HiC_scaffold_30_20688783 "1/1" "1/1" "0/1"
## HiC_scaffold_30_21446076 "0/0" "0/0" "0/2"
## HiC_scaffold_30_21598563 "0/0" "0/0" "0/0"
## HiC_scaffold_30_22155728 "0/1" "0/0" "0/1"
## HiC_scaffold_31_687411 "0/0" "0/1" "1/1"
## HiC_scaffold_31_3224722 "0/1" "0/0" "0/0"
## HiC_scaffold_31_3574854 "0/0" NA NA
## HiC_scaffold_31_5899551 "1/1" "1|1" "0/0"
## HiC_scaffold_31_5911491 "0/0" NA "0/1"
## HiC_scaffold_31_6297680 "0/1" "0/1" "0/0"
## HiC_scaffold_31_12394016 "0|1" "0/0" "1|1"
## HiC_scaffold_31_12394040 "0/1" "1|1" "0/0"
## HiC_scaffold_31_18612650 "1/1" NA "0/0"
## HiC_scaffold_32_4446859 "1/1" "0/0" NA
## HiC_scaffold_32_5274796 "1/1" "0/0" "0/0"
## HiC_scaffold_32_5275108 "0/1" "1/1" "1/1"
## HiC_scaffold_32_5282358 "0/0" "0/1" "0/1"
## HiC_scaffold_32_5450203 "1|1" "1|1" "1|1"
## HiC_scaffold_32_44200178 "0/1" NA "1/1"
## HiC_scaffold_33_638523 "0/1" "0/1" "1/1"
## HiC_scaffold_33_44489563 "0/1" "0/0" "0/0"
## HiC_scaffold_33_44489988 "1/1" "0/0" "1/1"
## HiC_scaffold_33_47080180 "1/1" "0/0" "0/0"
## HiC_scaffold_33_47495907 NA NA "0/0"
## HiC_scaffold_33_51865876 "0/0" "0/0" "0/0"
## HiC_scaffold_34_1096982 "0/0" "0/0" "0/1"
## HiC_scaffold_34_6091943 "1|1" "1|1" "1|1"
## HiC_scaffold_34_6100160 "1|1" NA NA
## HiC_scaffold_34_24368584 "1/1" "1/1" NA
## HiC_scaffold_35_3233120 "0/0" "1/1" "0/1"
## HiC_scaffold_35_3253574 "0/0" "0/0" "0/1"
## HiC_scaffold_35_5512296 "0/0" "0/0" "0/1"
## HiC_scaffold_35_15114788 "0/0" "0/0" NA
## HiC_scaffold_35_21214090 "0/0" NA "1/1"
## HiC_scaffold_35_21462564 NA "1/1" "1/1"
## HiC_scaffold_35_22746783 "0/1" "1/1" "1/1"
## HiC_scaffold_35_22747085 "0/0" "1|1" "1|1"
## HiC_scaffold_35_23059580 "1/1" "0/1" "0/0"
## HiC_scaffold_35_23158882 "0/1" "1/1" "1|1"
## HiC_scaffold_35_23261143 "1/1" "0/0" "1/1"
## HiC_scaffold_35_24403602 NA "1/1" "0/0"
## HiC_scaffold_35_24403620 "0/0" "1|1" "1/1"
## HiC_scaffold_35_24993986 "0|1" "1/1" "1/1"
## HiC_scaffold_35_24993998 "0/0" "0/0" "1|1"
## HiC_scaffold_36_1538038 "1/1" "1/1" NA
## HiC_scaffold_36_2464728 "0|1" "0|1" "0/1"
## HiC_scaffold_36_5489050 "0/1" "0/1" "0/0"
## HiC_scaffold_36_9673981 "1/1" "1/1" "0/0"
## HiC_scaffold_36_9674127 "1/1" "1/1" "1/1"
## HiC_scaffold_36_9674756 "1/1" "1/1" "1/1"
## HiC_scaffold_36_9676329 "1/1" NA "1/1"
## HiC_scaffold_36_12304516 "0/0" "0/0" "0/0"
## HiC_scaffold_36_12515555 "0/0" "0/0" "1|1"
## HiC_scaffold_36_13092647 "0/1" NA "0/0"
## HiC_scaffold_36_13766994 "1/1" "1/1" NA
## HiC_scaffold_36_14567741 "1/1" NA "1/1"
## HiC_scaffold_36_15530578 "1|1" "1|1" "0/1"
## HiC_scaffold_37_679894 "1/1" "1/1" "1/1"
## HiC_scaffold_37_916693 "0/0" NA "0/0"
## HiC_scaffold_37_928146 "0/1" "0/0" "0/0"
## HiC_scaffold_37_1256768 "0/0" "0|1" "0/0"
## HiC_scaffold_37_1270034 "1/1" "0/0" NA
## HiC_scaffold_37_1770997 "0/0" "0/0" "1|1"
## HiC_scaffold_37_1798298 NA NA "0/0"
## HiC_scaffold_37_2010342 "1|1" "1|1" NA
## HiC_scaffold_37_2141526 "0/0" "0/0" "1/1"
## HiC_scaffold_37_3952190 "0/0" NA "0/0"
## HiC_scaffold_37_3952215 "0/0" NA NA
## HiC_scaffold_37_9915037 NA "0/0" "0/0"
## HiC_scaffold_38_5383430 "0/0" "0/0" "0/0"
## HiC_scaffold_38_5668363 NA NA "0/1"
## HiC_scaffold_38_5879849 "0/1" "0/0" "0/0"
## HiC_scaffold_38_5880155 NA "0/0" "1/1"
## HiC_scaffold_38_10612790 "0/0" "1/1" "0/1"
## HiC_scaffold_38_11940240 "0/1" "0|2" "0|1"
## HiC_scaffold_38_12878826 "1|1" "0/0" "0/0"
## HiC_scaffold_38_12959698 "1|1" "0/0" "0/0"
## HiC_scaffold_38_13087368 "1/1" "1/1" "1/1"
## HiC_scaffold_38_13480648 "1|1" NA "0|1"
## HiC_scaffold_38_13965243 "1/1" "1/1" "1/1"
## HiC_scaffold_38_14089955 "1/1" "1/1" "0/0"
## HiC_scaffold_38_14408072 "0|1" "0/0" "0/0"
## HiC_scaffold_38_14931216 NA "1/1" "0/0"
## HiC_scaffold_38_14978356 "1|1" "0/0" "0/0"
## HiC_scaffold_38_14978367 "1|1" "0/0" "0/0"
## HiC_scaffold_38_15292863 "0/1" "0/0" "1/1"
## HiC_scaffold_38_15306135 "0/0" "0/0" "0/0"
## HiC_scaffold_38_16077506 "1|1" "0/0" "0/0"
## HiC_scaffold_38_16138965 "1/1" NA "0/0"
## HiC_scaffold_38_16226040 "1/1" "1/1" "1/1"
## HiC_scaffold_39_1393769 NA "0/0" "0/0"
## HiC_scaffold_39_2014970 "0/0" "1|1" "0/1"
## HiC_scaffold_39_2014982 "0/0" "1|1" "0|1"
## HiC_scaffold_39_2014985 "0/0" "1|1" "0|1"
## HiC_scaffold_39_2426443 "1/1" "0/0" "0|1"
## HiC_scaffold_39_2485330 "1/1" "1/1" "1/1"
## HiC_scaffold_39_3350506 "1|1" "0/0" "0/1"
## HiC_scaffold_39_5897388 NA NA "0|1"
## HiC_scaffold_39_17631133 "0/1" "1/1" "0/0"
## HiC_scaffold_4_12107187 "1/1" "0/0" "0/1"
## HiC_scaffold_4_18241670 "0/0" "1|1" "1|1"
## HiC_scaffold_4_18241723 NA "1|1" "1|1"
## HiC_scaffold_4_22418566 "1|1" "0/0" "0/0"
## HiC_scaffold_4_27899990 "0/0" "1/1" "0/1"
## HiC_scaffold_4_35575118 "1/1" "1/1" "0/1"
## HiC_scaffold_4_38000967 "1/1" "1/1" "0/1"
## HiC_scaffold_4_50654021 "0/0" "0/0" "1|1"
## HiC_scaffold_40_2243415 "1/1" NA "0/0"
## HiC_scaffold_40_3000572 "0/0" "0/0" "0/0"
## HiC_scaffold_40_3014177 "0/1" "1/1" "1|1"
## HiC_scaffold_40_3027900 NA "0/0" "1/1"
## HiC_scaffold_40_3143834 NA "0/0" "1/1"
## HiC_scaffold_40_3843942 "2|2" "0/0" "0/0"
## HiC_scaffold_40_3847620 NA "0/0" NA
## HiC_scaffold_40_3891007 NA "0/0" "0/0"
## HiC_scaffold_40_3920667 "2/2" "2/2" NA
## HiC_scaffold_40_4177963 "1/1" "0/1" "0/0"
## HiC_scaffold_40_4819107 "0/1" "0/1" "1/1"
## HiC_scaffold_40_4819834 "1|1" "0/0" "1|1"
## HiC_scaffold_40_5788271 "0/0" "1/1" "1/1"
## HiC_scaffold_40_5965269 "1|1" "1|1" "1|1"
## HiC_scaffold_40_6204154 NA "1/1" "0/0"
## HiC_scaffold_40_8387917 "0/1" "0/0" "1/1"
## HiC_scaffold_41_3235384 "0/0" NA "0/0"
## HiC_scaffold_41_3583000 "0/1" "0/0" "0/0"
## HiC_scaffold_41_5334504 "1/1" "1/1" "1/1"
## HiC_scaffold_41_5387631 "1|1" "1|1" "0/1"
## HiC_scaffold_41_6423426 "0/0" "1/1" "0/0"
## HiC_scaffold_41_14359947 "0/0" NA "0/0"
## HiC_scaffold_41_24007593 "1|1" "0/0" "1|1"
## HiC_scaffold_41_26225447 NA "0/0" NA
## HiC_scaffold_41_28626484 "1/1" "1/1" "0/1"
## HiC_scaffold_41_28660620 "0/0" "0/0" "0/1"
## HiC_scaffold_41_31007688 "1/1" "0/0" "0/1"
## HiC_scaffold_42_1131084 "1/1" "1/1" "0/1"
## HiC_scaffold_42_1818523 "0/0" NA "0/0"
## HiC_scaffold_42_2165002 NA NA "0/0"
## HiC_scaffold_42_2711332 "0/0" "0/0" "0/0"
## HiC_scaffold_42_6142699 "0/1" "0/0" "1/1"
## HiC_scaffold_42_6744976 NA "0/0" "0/0"
## HiC_scaffold_42_8066919 "0/0" "0/0" "0/0"
## HiC_scaffold_42_8068292 "0/1" "0|1" NA
## HiC_scaffold_42_12487888 NA "1|1" "1|1"
## HiC_scaffold_42_41366687 "0/0" "1/1" "1/1"
## HiC_scaffold_42_47313337 "0/0" "0/0" "1|1"
## HiC_scaffold_42_47313338 "0/0" "0/0" "1|1"
## HiC_scaffold_42_50784971 "0/0" "1|1" "0|1"
## HiC_scaffold_42_50784977 "0/0" "1|1" "0|1"
## HiC_scaffold_42_50784981 "1/1" "0/0" "0/1"
## HiC_scaffold_42_51916989 "1/1" NA "1/1"
## HiC_scaffold_43_3842003 "1/1" NA "1/1"
## HiC_scaffold_43_14140861 "1|1" "1|1" "0/0"
## HiC_scaffold_43_15053605 "1/1" "1/1" NA
## HiC_scaffold_43_17289945 "0/1" "1|1" "1|1"
## HiC_scaffold_43_29967704 "0|1" "0/1" "0|1"
## HiC_scaffold_43_35745831 "0/0" "0/0" "0/0"
## HiC_scaffold_43_37627949 "0|1" "1|1" "1|1"
## HiC_scaffold_43_37628126 "0/1" "0/0" "0/1"
## HiC_scaffold_43_44017118 "0/0" "0/1" NA
## HiC_scaffold_43_55124138 "0/0" "0/0" "1|1"
## HiC_scaffold_43_60107326 "0|1" "0/0" "0/1"
## HiC_scaffold_43_61359386 "1/1" "1/1" "0/1"
## HiC_scaffold_43_61702593 "0/0" "0/0" "1|1"
## HiC_scaffold_43_61702606 "0/0" "0/0" "1|1"
## HiC_scaffold_43_61702721 "1|1" NA "0/0"
## HiC_scaffold_43_61702738 "0/0" NA "1/1"
## HiC_scaffold_43_62511703 NA "0/0" "1|1"
## HiC_scaffold_43_64069457 "1/1" "1/1" "0/0"
## HiC_scaffold_43_64577269 NA "0/0" "1/1"
## HiC_scaffold_44_1920144 "0/0" "1|1" "1|1"
## HiC_scaffold_44_2148035 "0/0" "1/1" "0/0"
## HiC_scaffold_44_2568167 "0/1" "0/1" "1/1"
## HiC_scaffold_45_4180070 "0/1" "1/1" "1/1"
## HiC_scaffold_45_4797754 NA "2/2" "1/1"
## HiC_scaffold_45_5911123 "0/0" "1|1" NA
## HiC_scaffold_45_6958990 "0/0" "1/1" "0/0"
## HiC_scaffold_45_8516216 NA "1|1" "1/1"
## HiC_scaffold_45_10191213 "0/0" "1/1" "0|1"
## HiC_scaffold_45_12005885 "1/1" "0/1" "0/1"
## HiC_scaffold_45_12006766 "0/0" "0|1" "1|1"
## HiC_scaffold_45_24736172 "1/1" "0/0" "1/1"
## HiC_scaffold_45_24739830 "1|1" "0/0" "1|1"
## HiC_scaffold_46_9691567 NA "1/1" "0|1"
## HiC_scaffold_46_17380257 "1|1" "0/0" "0/0"
## HiC_scaffold_46_18387147 "0/0" "0/0" "0/1"
## HiC_scaffold_46_37092355 "1|1" "0/0" "0/0"
## HiC_scaffold_46_39183624 NA "0/0" "1/1"
## HiC_scaffold_46_39390547 "1/1" "0/1" "0/0"
## HiC_scaffold_46_42964941 "0/0" "0/0" "1|1"
## HiC_scaffold_46_42986653 "0/0" "0/0" NA
## HiC_scaffold_46_52074364 "1|1" "1|1" "0/1"
## HiC_scaffold_46_54255667 "0/1" "1/1" "1|1"
## HiC_scaffold_47_3750532 "1/1" "0/0" "0/0"
## HiC_scaffold_47_3751345 "0|1" NA "1/1"
## HiC_scaffold_47_15400639 "0|1" "1|1" "1|1"
## HiC_scaffold_47_24072414 NA "1|1" "0/0"
## HiC_scaffold_47_25273825 "1|1" "0|1" "1|1"
## HiC_scaffold_48_8752752 "2/2" "0/0" "0/0"
## HiC_scaffold_48_10765920 NA "0/0" "0/1"
## HiC_scaffold_48_16077918 "1|1" "0/0" "0/0"
## HiC_scaffold_48_16077940 "1|1" "1/1" "1/1"
## HiC_scaffold_48_16411609 "1/1" "0/1" "1/1"
## HiC_scaffold_48_19972580 "0/1" "0/1" "1/1"
## HiC_scaffold_48_23493079 "0|1" "0/0" "1|1"
## HiC_scaffold_48_23597210 "0/1" "1|1" "1|1"
## HiC_scaffold_48_24478493 "0/0" "0/0" "1/1"
## HiC_scaffold_48_24881148 "1/1" "0/0" "0/1"
## HiC_scaffold_48_25865723 "1/1" NA "1/1"
## HiC_scaffold_48_25984068 "0|1" "0/0" "1|1"
## HiC_scaffold_48_25989079 "1/1" "0/0" NA
## HiC_scaffold_48_30601375 "0/0" "0/0" "1|1"
## HiC_scaffold_48_31662115 "0/0" "1/1" "1/1"
## HiC_scaffold_48_41971562 NA "1/1" "0/1"
## HiC_scaffold_49_3392801 "0/0" "1|1" "0/0"
## HiC_scaffold_49_6101692 NA NA "1/1"
## HiC_scaffold_49_7996315 "0/1" "1/1" NA
## HiC_scaffold_49_9470474 NA "0/0" "0/1"
## HiC_scaffold_49_9886007 "0/0" "1/1" "1/1"
## HiC_scaffold_49_12592113 "0/1" NA "0/1"
## HiC_scaffold_49_12741575 NA "0/1" "0/0"
## HiC_scaffold_49_15135019 "1/1" "1/1" "1/1"
## HiC_scaffold_49_25906219 "0/1" "0/0" "0/0"
## HiC_scaffold_49_26614199 "0/0" "0/1" "1/1"
## HiC_scaffold_49_26655554 "0/0" NA "1|1"
## HiC_scaffold_49_37568341 "0/1" NA "0/0"
## HiC_scaffold_49_37568353 "0/1" NA "0/0"
## HiC_scaffold_49_40002255 "0/0" "0/0" "1|1"
## HiC_scaffold_49_40003229 "0/0" "1|1" "0/0"
## HiC_scaffold_49_42966376 "1|1" "0/0" "0/0"
## HiC_scaffold_5_801252 "0/1" "0/0" "0/0"
## HiC_scaffold_5_1446603 "0/0" "0/0" "0/0"
## HiC_scaffold_5_1446611 "0/0" "0/0" "0/0"
## HiC_scaffold_5_1530759 "0|1" "0/0" "1/1"
## HiC_scaffold_5_1539275 "0/0" NA "0/0"
## HiC_scaffold_5_1789576 "1|1" "0/0" "0/0"
## HiC_scaffold_5_1808197 "0/0" "1/1" "1/1"
## HiC_scaffold_5_1808204 "1/1" "0/0" "0/0"
## HiC_scaffold_5_1943895 "1|1" NA "1|1"
## HiC_scaffold_5_1944469 "1/1" "1/1" NA
## HiC_scaffold_5_2857283 "1/1" "1/1" "1|1"
## HiC_scaffold_5_4061378 "1/1" NA "0/1"
## HiC_scaffold_5_4340647 NA "1|1" "1|1"
## HiC_scaffold_5_4435246 "1/1" NA "1/1"
## HiC_scaffold_5_8868783 "0/1" "0/0" "1/1"
## HiC_scaffold_50_4315969 NA "0/0" "0/1"
## HiC_scaffold_50_11652296 NA "1/1" "1|1"
## HiC_scaffold_50_11657309 "1/1" "0/1" "1/1"
## HiC_scaffold_50_15521027 "0/0" "0/1" "0|1"
## HiC_scaffold_50_21050962 NA "1/1" "0/0"
## HiC_scaffold_50_23686202 "1|1" "0|0" "1|1"
## HiC_scaffold_50_27393462 "0/0" "0/0" "1|1"
## HiC_scaffold_50_42586883 "1/1" "0/0" "1|1"
## HiC_scaffold_50_45087211 "1/1" "0/0" "1/1"
## HiC_scaffold_50_49796550 "1/1" "1/1" "1/1"
## HiC_scaffold_50_54383367 "0/1" "0/1" "0|1"
## HiC_scaffold_50_63318678 "0/1" "1/1" "1/1"
## HiC_scaffold_51_3521000 "0/0" "0/0" "0/1"
## HiC_scaffold_51_4681905 "0/1" NA "0/1"
## HiC_scaffold_51_6305599 "2|2" "0|2" "0/0"
## HiC_scaffold_51_8530818 "0/0" "0/0" "0/0"
## HiC_scaffold_51_11653312 "0/0" "0/0" "1/1"
## HiC_scaffold_51_13138547 "1/1" "1/1" "1/1"
## HiC_scaffold_51_14457091 "0/0" "1|1" "0/1"
## HiC_scaffold_51_15512668 "1/1" "0/1" "0/1"
## HiC_scaffold_51_17816346 "0/1" "0/0" "0/1"
## HiC_scaffold_51_19997934 "0/0" "0/0" "1|1"
## HiC_scaffold_51_19997936 "0/0" "0/0" "1|1"
## HiC_scaffold_51_20870773 NA NA "0/0"
## HiC_scaffold_51_26660104 "1|1" "0/0" "0/0"
## HiC_scaffold_51_40727521 "1|1" "0/0" "0/0"
## HiC_scaffold_51_40892841 "0/0" NA "0/1"
## HiC_scaffold_51_41717519 "0/0" "0/1" "0/0"
## HiC_scaffold_51_42547638 "1/1" "1/1" "1/1"
## HiC_scaffold_52_3335804 "0/0" NA NA
## HiC_scaffold_52_4149130 "0/0" "0/0" "0/1"
## HiC_scaffold_52_6893679 "1|1" "1|1" "1|1"
## HiC_scaffold_52_13155416 "1/1" "1/1" "1/1"
## HiC_scaffold_52_13155437 "1|1" "1|1" "1|1"
## HiC_scaffold_52_13155442 "1|1" "1|1" "1|1"
## HiC_scaffold_52_14885688 "0/0" NA NA
## HiC_scaffold_52_14895078 "0/0" "1/1" "0/0"
## HiC_scaffold_52_15141791 "1/1" "1/1" "0/0"
## HiC_scaffold_52_15743051 "0/0" "0/0" "1|1"
## HiC_scaffold_52_15760201 "0/0" "0/0" NA
## HiC_scaffold_52_15834589 "0/0" "0/0" "0/1"
## HiC_scaffold_52_15841769 "0/0" "1/1" "0/0"
## HiC_scaffold_52_15862421 "1|1" "1|1" NA
## HiC_scaffold_52_15970970 "0/0" NA "1/2"
## HiC_scaffold_52_16275237 "0/0" "1/1" "0/1"
## HiC_scaffold_52_16275240 "1|1" "0/0" "0|1"
## HiC_scaffold_52_16275290 "1|1" "0/0" "0/1"
## HiC_scaffold_52_16524164 "1|1" "0/0" "0/0"
## HiC_scaffold_52_16524572 "1/1" "1/1" "0/1"
## HiC_scaffold_52_16525647 "1/1" "0/1" "0/1"
## HiC_scaffold_52_16637047 "1/1" "1/1" "0/1"
## HiC_scaffold_52_17202127 "0/0" "0/0" "0/0"
## HiC_scaffold_52_17207724 "1/1" "0/0" NA
## HiC_scaffold_52_17508820 "1|1" "1|1" "1|1"
## HiC_scaffold_52_17547593 "0/1" "0/0" NA
## HiC_scaffold_52_17551239 "0/0" "0/0" "0/1"
## HiC_scaffold_52_17560696 "1|1" "0/0" "1|1"
## HiC_scaffold_52_17560699 "1|1" "0/0" "1|1"
## HiC_scaffold_52_17741250 "1/1" "0/0" "0/1"
## HiC_scaffold_52_17742260 "0/0" NA "0/1"
## HiC_scaffold_52_18340578 "0|1" "1/1" "1/1"
## HiC_scaffold_52_18415911 "1/1" "0/0" "0/0"
## HiC_scaffold_52_22189517 "1/1" NA "1/1"
## HiC_scaffold_52_22526592 "0/1" "0/0" "0|1"
## HiC_scaffold_52_26393471 "0/0" NA "0/0"
## HiC_scaffold_52_26799380 "1|1" "0/0" "0/1"
## HiC_scaffold_52_31871931 "1/1" "0/0" "1/1"
## HiC_scaffold_52_31874283 "1|1" "1/1" "1|1"
## HiC_scaffold_52_31874287 "0|1" "0/0" "0/0"
## HiC_scaffold_52_32161053 "1|1" "1|1" "0|1"
## HiC_scaffold_52_33165557 "1/1" "1/1" "1/1"
## HiC_scaffold_52_33897620 "1/1" "0/0" "0/0"
## HiC_scaffold_52_34763156 "1/1" "0/1" NA
## HiC_scaffold_52_34763171 "1|1" "0/1" NA
## HiC_scaffold_52_35174755 "0|1" NA "0/0"
## HiC_scaffold_52_35608453 "1/1" "0/0" "1/1"
## HiC_scaffold_52_35608470 "1|1" "0/0" "0|1"
## HiC_scaffold_52_39464728 NA "0/0" "0/0"
## HiC_scaffold_52_42141354 "0/0" "1|1" "0/1"
## HiC_scaffold_52_44675725 "0/1" "1/1" "1|1"
## HiC_scaffold_52_49935920 "1/1" "1/1" NA
## HiC_scaffold_53_21789524 "0/0" "0/0" "1|1"
## HiC_scaffold_53_25168042 "0/0" "1/1" "0/0"
## HiC_scaffold_53_26398989 "0/0" "0|1" "0|1"
## HiC_scaffold_53_26398992 "0/0" "0|1" "0|1"
## HiC_scaffold_53_26398994 "0/0" "0|1" "0|1"
## HiC_scaffold_53_26549665 "0/0" NA "0|1"
## HiC_scaffold_53_29227676 "0/0" "0|1" "0/0"
## HiC_scaffold_53_31250349 "1/1" "1/1" "0/1"
## HiC_scaffold_54_530581 "0/0" "1|1" "0/1"
## HiC_scaffold_54_794095 NA "1|1" "1|1"
## HiC_scaffold_54_1171109 "0/0" "0|1" "1|1"
## HiC_scaffold_54_1378956 "0/0" "0/0" NA
## HiC_scaffold_54_1380539 NA "1|1" "1/1"
## HiC_scaffold_54_3045015 "1/1" "1/1" "0/1"
## HiC_scaffold_54_3185987 "1/1" NA "0/0"
## HiC_scaffold_54_4401098 "0/1" "1|1" "0/0"
## HiC_scaffold_54_5595903 "1/1" "0/0" "0/0"
## HiC_scaffold_54_5595921 "0/0" NA "0/1"
## HiC_scaffold_54_5595928 "0/0" "0/1" "1|1"
## HiC_scaffold_54_5595949 "0/0" "0/0" "0/0"
## HiC_scaffold_54_6649662 NA NA "1/1"
## HiC_scaffold_54_8036734 "1|1" "1|1" "1|1"
## HiC_scaffold_54_9206614 "0/1" "0/1" "1/1"
## HiC_scaffold_54_35913192 "0/0" "0/0" "1/1"
## HiC_scaffold_54_35913282 "0/0" "0|1" "0/1"
## HiC_scaffold_54_35913283 "0/0" "0|1" "0/1"
## HiC_scaffold_55_1260491 "1/1" "0/0" "1/1"
## HiC_scaffold_55_3254027 "1/1" "0/0" "0/1"
## HiC_scaffold_55_3281985 "0/1" "1|1" "0/0"
## HiC_scaffold_55_5409544 "1/1" "0/0" "1/1"
## HiC_scaffold_55_5411094 "1|1" "1|1" "0|1"
## HiC_scaffold_55_5411115 "1/1" "0/1" "0|1"
## HiC_scaffold_55_18121799 "1/1" "1/1" NA
## HiC_scaffold_55_19605809 NA "0|1" "1|1"
## HiC_scaffold_55_19605817 NA "0/1" "1|1"
## HiC_scaffold_55_19605821 NA "0|1" "1|1"
## HiC_scaffold_55_20195204 NA "0/1" "0/1"
## HiC_scaffold_55_20886967 NA "1/1" "0/0"
## HiC_scaffold_55_23222937 NA "1/1" "1/1"
## HiC_scaffold_55_23626331 "0/1" "1/1" "0/0"
## HiC_scaffold_55_24539590 NA "1/1" "0/0"
## HiC_scaffold_55_24585939 NA "1/1" NA
## HiC_scaffold_55_34174151 "1/1" "0/0" NA
## HiC_scaffold_56_17874332 "0/1" NA "0/0"
## HiC_scaffold_56_18635259 "0/0" "1|1" "0/0"
## HiC_scaffold_56_23654344 "0/0" "1/1" "0/0"
## HiC_scaffold_56_35850533 "0/0" "0/0" "0/1"
## HiC_scaffold_56_35850539 "0/0" "0/0" "0/1"
## HiC_scaffold_56_40813556 "0/0" "0/1" "1/1"
## HiC_scaffold_56_53211633 NA "0/0" NA
## HiC_scaffold_56_60070829 "0/1" "1/1" "1/1"
## HiC_scaffold_56_73286017 "0/1" "0/0" "0/1"
## HiC_scaffold_56_73829442 NA "0/0" "0/0"
## HiC_scaffold_56_73829443 "0/0" "0/0" "0/0"
## HiC_scaffold_56_76060304 "0/0" NA "1|1"
## HiC_scaffold_57_25306408 NA "0/0" "1/1"
## HiC_scaffold_57_29222385 NA "0/0" "1/1"
## HiC_scaffold_57_29592432 "0/0" "0/0" "0/1"
## HiC_scaffold_57_31472698 "0|1" "0/0" "0/1"
## HiC_scaffold_57_32371742 "0/1" "0/0" "0/0"
## HiC_scaffold_57_36495072 NA "0/1" NA
## HiC_scaffold_57_37286264 "0/0" "0/0" "0/0"
## HiC_scaffold_57_38537415 "0/1" "0/0" "0/0"
## HiC_scaffold_57_45438854 "1|1" "2|2" "2|2"
## HiC_scaffold_57_52856874 NA "0/0" "0/0"
## HiC_scaffold_57_53575355 "1/1" "0/0" "1/1"
## HiC_scaffold_57_55856783 "1/1" "0/0" "0/0"
## HiC_scaffold_58_1362614 "1/1" "0/0" "1/1"
## HiC_scaffold_58_1432845 "1|1" "0/1" "1/1"
## HiC_scaffold_58_1541720 "0/0" "0/0" "0|2"
## HiC_scaffold_58_2777120 "0/0" NA "1/1"
## HiC_scaffold_58_2973169 "1/1" "1/1" "1/1"
## HiC_scaffold_58_3243043 NA "1/1" "0/1"
## HiC_scaffold_58_4035282 "1/1" "1/1" "0/1"
## HiC_scaffold_58_5442157 "1|1" "0/0" "0/1"
## HiC_scaffold_58_8004631 "1/1" "0/0" "0/0"
## HiC_scaffold_58_8058998 "0/0" "0/1" "1/1"
## HiC_scaffold_58_8932837 "0/0" "1/1" "1/1"
## HiC_scaffold_58_14814944 "1/1" "0/0" NA
## HiC_scaffold_58_15639988 NA NA "1/1"
## HiC_scaffold_58_15707198 "1/1" "1/1" "1/1"
## HiC_scaffold_58_15707258 "1/1" "1/1" "1/1"
## HiC_scaffold_58_15710623 "0/0" "0/0" "0/1"
## HiC_scaffold_58_19155063 "0/0" "0/0" NA
## HiC_scaffold_58_20224050 "0/0" NA "0/0"
## HiC_scaffold_58_38475355 "1/1" "1/1" "1/1"
## HiC_scaffold_59_3979055 "0/0" NA "0/1"
## HiC_scaffold_59_5071810 "1|1" NA "1|1"
## HiC_scaffold_59_5349936 "1/1" NA "0/1"
## HiC_scaffold_59_5350114 "1/1" "0/0" "0/1"
## HiC_scaffold_59_7738302 "0/1" "1/1" "0/0"
## HiC_scaffold_59_7738351 "1/1" NA "0/0"
## HiC_scaffold_59_7958561 "0/0" "1|1" "0/0"
## HiC_scaffold_59_9273798 NA "0/0" "0/0"
## HiC_scaffold_59_50928099 "0/0" "1/1" "0/1"
## HiC_scaffold_59_52960060 "0/0" "1|1" "0/0"
## HiC_scaffold_6_10569023 "0/1" NA "1/1"
## HiC_scaffold_6_10711445 "0/0" "1/1" "1/1"
## HiC_scaffold_6_13209200 "1|1" "0/1" "1|1"
## HiC_scaffold_6_13213107 "0/0" NA "0/0"
## HiC_scaffold_6_13311684 "1|1" "1/1" "0/0"
## HiC_scaffold_6_15670783 "1|1" "0/0" "1|1"
## HiC_scaffold_6_19111232 "1/1" NA "1/1"
## HiC_scaffold_6_32805498 "1/1" "1/1" "1|1"
## HiC_scaffold_6_38793174 "0/1" "0/1" "0/0"
## HiC_scaffold_6_41092101 "1|1" "1|1" "1|1"
## HiC_scaffold_6_41342933 "0/0" "0/1" "0/0"
## HiC_scaffold_6_47594508 "0/0" "0/0" "0/1"
## HiC_scaffold_60_70878 "0|1" "0/0" "1|1"
## HiC_scaffold_60_99549 "0|1" "0/0" "0/1"
## HiC_scaffold_60_201823 "0/1" "1/1" "1/1"
## HiC_scaffold_60_712969 "1|1" "0/0" "1|1"
## HiC_scaffold_60_744783 NA "0/1" "0/1"
## HiC_scaffold_60_744788 NA "0/1" "0|1"
## HiC_scaffold_60_22142128 "0/1" "0/0" "0/1"
## HiC_scaffold_60_27599770 "1/1" "1/1" "1/1"
## HiC_scaffold_60_30608878 "1|1" "1|1" "1|1"
## HiC_scaffold_60_32657324 "0/1" "0/0" "1/1"
## HiC_scaffold_60_32672580 "1/1" "1/1" "1/1"
## HiC_scaffold_60_38856893 "0/0" NA "0/1"
## HiC_scaffold_60_39028335 "1/1" "1/1" "1/1"
## HiC_scaffold_60_40296869 NA "0/0" "0/0"
## HiC_scaffold_60_42775723 "1|1" "0/0" "1/1"
## HiC_scaffold_60_44687906 "0/0" "0/0" "1/1"
## HiC_scaffold_60_44804601 "0/1" "0/0" "1/1"
## HiC_scaffold_60_53696867 "1|1" "0/0" "0/0"
## HiC_scaffold_60_53696868 "1|1" "0/0" "0/0"
## HiC_scaffold_60_60651515 "0|1" "0/0" "1/1"
## HiC_scaffold_60_70678462 "1/1" "1/1" "1/1"
## HiC_scaffold_61_2205328 "0/0" "0/0" "1|1"
## HiC_scaffold_61_2491706 "1|1" NA "1|1"
## HiC_scaffold_61_4009916 "0/0" "0/0" "0/0"
## HiC_scaffold_61_4062917 NA "1/1" "0/0"
## HiC_scaffold_61_4122763 "1|1" NA "1|1"
## HiC_scaffold_61_4216461 "1/1" NA "1/1"
## HiC_scaffold_61_4325053 NA "0/0" "0/0"
## HiC_scaffold_61_9004838 "0/1" "1/1" "1|1"
## HiC_scaffold_61_14635083 "0/1" "0/0" "0/0"
## HiC_scaffold_62_1128608 "1/1" "1/1" "1/1"
## HiC_scaffold_62_11335200 NA "0/0" "0/0"
## HiC_scaffold_62_18828476 "0/0" "1/1" "1/1"
## HiC_scaffold_62_21548870 "0|1" "1|1" "1|1"
## HiC_scaffold_62_23103274 "1/1" "0/1" "0/0"
## HiC_scaffold_62_25793456 NA "0/0" "0/0"
## HiC_scaffold_62_25887474 "1/1" "0/0" "1/1"
## HiC_scaffold_62_28516096 "1|1" "0/0" "1|1"
## HiC_scaffold_62_28516099 "1|1" "0/0" "1|1"
## HiC_scaffold_62_28818725 "0|1" "1|1" "1|1"
## HiC_scaffold_62_28818729 "0/0" "0/0" "0/0"
## HiC_scaffold_62_45207353 "1/1" "1/1" "0/0"
## HiC_scaffold_63_3092269 "1/1" "1/1" "0/0"
## HiC_scaffold_63_3977940 NA NA "1/1"
## HiC_scaffold_63_4084937 "0/1" NA "0/0"
## HiC_scaffold_63_4196326 "1/1" "1/1" "1/1"
## HiC_scaffold_63_6262453 "0/1" NA "0/1"
## HiC_scaffold_63_6350204 "0/0" "1/1" "1/1"
## HiC_scaffold_63_6458794 "0/0" "0/0" "0/0"
## HiC_scaffold_64_9162978 NA "0/0" "0/0"
## HiC_scaffold_64_16876561 "0/0" "0/0" NA
## HiC_scaffold_64_17543009 "0/1" "0/0" NA
## HiC_scaffold_64_18925356 "1/1" "1/1" "1/1"
## HiC_scaffold_64_19133050 "0/0" "0/0" "0|1"
## HiC_scaffold_64_19627769 "1|1" "1|1" "1|1"
## HiC_scaffold_64_20477250 "0/0" "1/1" "1/1"
## HiC_scaffold_64_22816677 "0/0" "1/1" "1/1"
## HiC_scaffold_64_22954654 "0|1" NA "1|1"
## HiC_scaffold_64_22954658 "0|1" NA "1|1"
## HiC_scaffold_64_22954682 "1/1" NA "1/1"
## HiC_scaffold_65_6829971 "0/0" "0/0" "0/0"
## HiC_scaffold_65_8071102 "0/0" NA "0/0"
## HiC_scaffold_65_9023979 "0/0" "0/0" NA
## HiC_scaffold_65_9839671 "0/0" "0/0" "1/1"
## HiC_scaffold_65_10404778 "0/0" "1/1" "1/1"
## HiC_scaffold_65_11327791 "0/0" "1/1" "1/1"
## HiC_scaffold_65_11332104 "0/0" "0/0" "0/1"
## HiC_scaffold_65_34823822 "0/0" "0/0" "0/0"
## HiC_scaffold_65_51418017 "1/1" "1/1" "1/1"
## HiC_scaffold_65_54053979 "0/0" "1|1" "0/0"
## HiC_scaffold_65_57110875 "0/0" "0/0" NA
## HiC_scaffold_66_15615363 "0/0" "0/1" "0/0"
## HiC_scaffold_66_15672090 "0/0" "0/0" "0/0"
## HiC_scaffold_66_17903445 "1/1" "0/0" "1|1"
## HiC_scaffold_66_18298629 "0|1" "1|1" "1|1"
## HiC_scaffold_66_19730676 NA "0/0" "1|1"
## HiC_scaffold_66_23688768 "0/0" NA "0/0"
## HiC_scaffold_66_26614535 "0/0" "0/0" "0/1"
## HiC_scaffold_66_27445665 "1|1" "0/1" "1|1"
## HiC_scaffold_66_29457165 "0/0" "0/0" "1|1"
## HiC_scaffold_66_29457180 NA "1/1" "0/0"
## HiC_scaffold_66_30116287 "2|2" "1|1" "0|0"
## HiC_scaffold_66_31603503 "0/1" NA "0/0"
## HiC_scaffold_66_33261460 "0/1" "0/0" "0/0"
## HiC_scaffold_66_34138981 "0/0" "1/1" NA
## HiC_scaffold_66_34139020 "1/1" "0/0" "1/1"
## HiC_scaffold_66_34142862 NA "0/0" NA
## HiC_scaffold_67_1404390 "0/1" NA NA
## HiC_scaffold_67_28493665 "1/1" NA "1/1"
## HiC_scaffold_67_30243885 "0/0" "0/0" "1|1"
## HiC_scaffold_67_31511806 "1|1" "0/0" "0|1"
## HiC_scaffold_67_34638092 "0/0" "0/0" "0/0"
## HiC_scaffold_67_37534720 NA "0/1" "0/0"
## HiC_scaffold_67_39679546 NA "1/1" "0/1"
## HiC_scaffold_67_39854918 "0/1" NA "0/0"
## HiC_scaffold_67_39860738 "1/1" NA "1/1"
## HiC_scaffold_67_40331656 "0/0" "0/0" "1/1"
## HiC_scaffold_67_40824747 "1|1" "0/0" "1|1"
## HiC_scaffold_68_3438132 "1|1" "1|1" NA
## HiC_scaffold_68_3438133 "1|1" "1|1" NA
## HiC_scaffold_68_11206902 "0/0" NA "1/1"
## HiC_scaffold_68_32770607 NA "0/1" "1|1"
## HiC_scaffold_68_34016823 "0/2" "0/0" "0|0"
## HiC_scaffold_68_34020019 NA "0/1" "0/0"
## HiC_scaffold_68_40296057 NA NA "0|1"
## HiC_scaffold_68_40296059 NA NA "0|1"
## HiC_scaffold_68_65001879 "0/1" "1/1" "0/0"
## HiC_scaffold_69_23311147 "0/0" "0/0" "0|2"
## HiC_scaffold_69_27351303 NA NA "1/1"
## HiC_scaffold_69_29437208 "1|1" "1|1" "1|1"
## HiC_scaffold_69_33699381 "1|1" "1|1" "1|1"
## HiC_scaffold_69_40194698 "0/1" "0/1" "0/1"
## HiC_scaffold_69_48273575 "1/1" "1/1" "1/1"
## HiC_scaffold_69_48348026 "0/0" "1/1" "0|1"
## HiC_scaffold_69_48348034 "0/0" NA "0|1"
## HiC_scaffold_69_49563252 "1/1" "0/0" "1/1"
## HiC_scaffold_69_49593952 "0/0" NA "0/1"
## HiC_scaffold_69_49859037 "1|1" "0/0" "0|1"
## HiC_scaffold_69_51271238 "0/0" "0/1" "1/1"
## HiC_scaffold_69_51529836 "0/0" "0/0" "1/1"
## HiC_scaffold_69_57313650 "1/1" "1/1" "1/1"
## HiC_scaffold_69_57359194 "0/0" "0/1" "1/1"
## HiC_scaffold_6951_523650 "1/1" "0/0" "0/0"
## HiC_scaffold_6951_897126 NA "0/0" "0/1"
## HiC_scaffold_6951_1134482 "1|1" "0/0" "0/1"
## HiC_scaffold_6951_2484960 "0/0" NA "1/1"
## HiC_scaffold_6951_3301273 "0/0" "1|1" "0/0"
## HiC_scaffold_6951_3314609 "0/0" "0/0" "0/0"
## HiC_scaffold_6951_3945993 NA "0/0" "0/0"
## HiC_scaffold_6958_218293 "0/2" "0/0" "0/0"
## HiC_scaffold_6958_449143 "1/1" NA "0/1"
## HiC_scaffold_7_351023 "1/1" "0/0" "0/0"
## HiC_scaffold_7_488024 "1|1" "0/0" NA
## HiC_scaffold_7_492663 "1/1" "1/1" "0/1"
## HiC_scaffold_7_693567 "1|1" "0/0" "0/0"
## HiC_scaffold_7_2379128 "0/0" "0/0" "1/1"
## HiC_scaffold_7_3087721 "1/1" "0/1" "0/1"
## HiC_scaffold_7_3394880 "0/1" "0/0" "1/1"
## HiC_scaffold_7_22247106 "0/0" "0/0" "1|1"
## HiC_scaffold_70_4632611 "0/1" "0/0" "0/0"
## HiC_scaffold_70_14042778 NA NA "0/0"
## HiC_scaffold_71_410844 "0/0" "0/0" "1|1"
## HiC_scaffold_71_1753451 "0/0" "0/1" "0/0"
## HiC_scaffold_71_2283682 "0/1" "0|1" "0/0"
## HiC_scaffold_71_3439685 "0/0" "0/0" "0/0"
## HiC_scaffold_71_17850462 NA "1/1" "0/0"
## HiC_scaffold_71_20588314 "0/0" "0/0" "1/1"
## HiC_scaffold_71_25465351 "0|1" "0|1" "1|1"
## HiC_scaffold_71_25465352 "0|1" "0|1" "1|1"
## HiC_scaffold_71_26356062 "0/1" "0/0" "0/0"
## HiC_scaffold_72_11785096 "1/1" "0/0" "0/0"
## HiC_scaffold_72_17285854 "1/1" "1/1" "0/1"
## HiC_scaffold_72_23704999 "0/0" "0/0" "1/1"
## HiC_scaffold_72_24465318 "1/1" "1/1" "0|1"
## HiC_scaffold_72_30457277 "1/1" "0/1" "0/0"
## HiC_scaffold_72_32068649 "0/0" "0/0" NA
## HiC_scaffold_72_35058295 "1/1" "0/0" "0/1"
## HiC_scaffold_72_36024997 NA "0/0" "0/1"
## HiC_scaffold_72_37135067 "0/0" NA "1|1"
## HiC_scaffold_72_38410141 "0/1" "0/1" "1/1"
## HiC_scaffold_72_38448056 "1|1" "1|1" "0/0"
## HiC_scaffold_72_41412511 "0/1" "0/0" "0/1"
## HiC_scaffold_73_2192629 "1|1" "0/0" "1|1"
## HiC_scaffold_73_2920208 NA "0|1" "0/0"
## HiC_scaffold_73_4522493 "1|1" NA "1|1"
## HiC_scaffold_73_4748625 "1/1" "1|1" "1/1"
## HiC_scaffold_73_5839336 "1/1" "1/1" "1/1"
## HiC_scaffold_73_9338582 "0/1" "0/1" "0/1"
## HiC_scaffold_73_27393859 "0/1" "0/0" NA
## HiC_scaffold_74_14235619 "0/0" "0/0" NA
## HiC_scaffold_74_14515598 "1/1" "1/1" "1/1"
## HiC_scaffold_74_15116121 NA "0/0" "1|1"
## HiC_scaffold_74_17233613 "0/1" "0/0" "0/1"
## HiC_scaffold_74_17725340 "0/0" "0/0" "0|1"
## HiC_scaffold_74_18418135 "0/0" "0/0" "1|1"
## HiC_scaffold_74_18418138 "0/0" "0/0" "1|1"
## HiC_scaffold_74_21254425 "0/1" "1/1" "1/1"
## HiC_scaffold_74_22261065 "1/1" "0/0" NA
## HiC_scaffold_74_47132519 "0/0" "0/1" "0/0"
## HiC_scaffold_74_50979096 "0/0" "0/1" "1/1"
## HiC_scaffold_74_51060549 "0/0" NA "1/1"
## HiC_scaffold_74_53256803 "0/0" "1/1" "1/1"
## HiC_scaffold_74_55464169 "0/1" "0/0" "0/1"
## HiC_scaffold_74_55515512 "0/1" "1/1" "1/1"
## HiC_scaffold_74_55999260 "0/0" "1|1" NA
## HiC_scaffold_74_57404902 "1|1" "0/0" "0/0"
## HiC_scaffold_74_58181927 "1|1" "0/0" "0/0"
## HiC_scaffold_74_58198600 "0/0" NA "1/1"
## HiC_scaffold_74_63060195 NA "0/1" "0/1"
## HiC_scaffold_75_5345466 "0/0" "0/0" "0/0"
## HiC_scaffold_75_5346522 "1/1" NA "0/1"
## HiC_scaffold_75_5346535 "1/1" NA "0/1"
## HiC_scaffold_75_9850973 "1/1" "1|1" "0/0"
## HiC_scaffold_76_27149820 "0|1" "1/1" "0/0"
## HiC_scaffold_76_31582908 "0/1" "0/0" "1/1"
## HiC_scaffold_76_31792815 "0/0" "0/1" "0/0"
## HiC_scaffold_76_35352820 "1/1" "1/1" "1|1"
## HiC_scaffold_76_57782171 "1/1" "1/1" "1/1"
## HiC_scaffold_76_59862401 "1/1" "1|1" "0/0"
## HiC_scaffold_76_61095594 "1|1" "0/0" "0/0"
## HiC_scaffold_76_65496128 "0/1" "0/0" "0/0"
## HiC_scaffold_76_68965847 "0/1" "1/1" "0/0"
## HiC_scaffold_76_68966411 "1/1" "1/1" "0/0"
## HiC_scaffold_76_69823482 "1|1" "0/0" "1|1"
## HiC_scaffold_76_73343841 "1/1" NA NA
## HiC_scaffold_77_3598274 "1/1" "0/0" "0/0"
## HiC_scaffold_77_6982137 "1/1" "0/0" "1/1"
## HiC_scaffold_77_11021994 "1/1" NA "0|1"
## HiC_scaffold_77_13608165 "1/1" "0/0" "0/0"
## HiC_scaffold_77_16888594 "0|1" NA "0/1"
## HiC_scaffold_77_16888623 "0/1" "0/1" "0/1"
## HiC_scaffold_77_16889448 "0/0" "0/0" "0/0"
## HiC_scaffold_77_39784685 "1|1" "1|1" "0/0"
## HiC_scaffold_77_44375866 "0/0" NA "1/1"
## HiC_scaffold_77_45385370 "0/0" "0/0" "0/0"
## HiC_scaffold_78_5719919 "0/0" "1/1" "0/1"
## HiC_scaffold_78_11353297 "0|1" "0/0" "0/1"
## HiC_scaffold_78_27316392 "0/0" NA "0/0"
## HiC_scaffold_78_48124809 "0/0" "0/0" "0/0"
## HiC_scaffold_78_48124826 "0/1" "1/1" "1/1"
## HiC_scaffold_78_48126176 NA "0/0" "1/1"
## HiC_scaffold_78_48279096 "0/0" "0/1" "1/1"
## HiC_scaffold_78_48434558 "0/1" NA "1|1"
## HiC_scaffold_78_49759181 "0/0" "0/0" "0|1"
## HiC_scaffold_78_49759192 "0/1" "0/0" "0/0"
## HiC_scaffold_78_49759215 "1/1" "1/1" "1/1"
## HiC_scaffold_78_51364025 "1/1" "1/1" "1/1"
## HiC_scaffold_78_55395445 "0/1" "0/1" "0/0"
## HiC_scaffold_78_59610866 "1/1" NA "1/1"
## HiC_scaffold_78_62136661 "0/1" NA "1/1"
## HiC_scaffold_79_1643780 "0/0" "0/0" "0/0"
## HiC_scaffold_79_2519178 "1/1" "1/1" "1/1"
## HiC_scaffold_79_2858100 NA NA "0/0"
## HiC_scaffold_79_3922454 NA "0/0" "1/1"
## HiC_scaffold_79_4127878 "1|1" "1|1" "1|1"
## HiC_scaffold_79_4543693 "1/1" "0/0" "0/1"
## HiC_scaffold_79_11507678 "1/1" "0/0" "1/1"
## HiC_scaffold_79_12618812 "0/0" "0/1" "1/1"
## HiC_scaffold_79_14185404 NA "1|1" "1|1"
## HiC_scaffold_79_17120237 "0/1" "0/0" "1/1"
## HiC_scaffold_79_17120254 "0/1" "0/0" "1/1"
## HiC_scaffold_79_35551507 "0|1" "0/0" "0/0"
## HiC_scaffold_79_35551543 "0/1" "0/0" "0/0"
## HiC_scaffold_79_38927423 "0/0" "0/0" "0/0"
## HiC_scaffold_79_42623307 "1|1" "1|1" "1|1"
## HiC_scaffold_79_43179786 "1/1" "0/0" "0|1"
## HiC_scaffold_79_43180099 "1/1" "0/0" "1/1"
## HiC_scaffold_79_43828078 NA "0/0" "1|1"
## HiC_scaffold_79_43872513 "0/1" "1/1" "0/0"
## HiC_scaffold_79_44627215 "1/1" "1/1" "1/1"
## HiC_scaffold_79_50772769 "0/1" "0|0" "0/1"
## HiC_scaffold_79_55468575 "1/1" "0/0" "0/0"
## HiC_scaffold_79_55816114 "0/1" "0/0" "0/0"
## HiC_scaffold_79_59915784 "0/0" "1|1" "0/0"
## HiC_scaffold_79_60165298 "0/0" "0/0" "0|1"
## HiC_scaffold_79_60165305 "0/0" "0/1" "0/1"
## HiC_scaffold_79_69145556 "0/0" "0/0" NA
## HiC_scaffold_79_70208305 "1|1" "0|1" "0|1"
## HiC_scaffold_79_73412292 NA "2/2" "0/0"
## HiC_scaffold_79_73416663 "0|1" "0/0" "0|1"
## HiC_scaffold_79_73416688 "0/1" "0/0" "0/0"
## HiC_scaffold_79_76863102 "0/1" "0/0" "0/0"
## HiC_scaffold_79_81279649 "0/0" NA "0/0"
## HiC_scaffold_79_81499990 NA "1/1" "1/1"
## HiC_scaffold_79_82319836 "1|1" "1|1" "0/0"
## HiC_scaffold_79_82319849 "1|1" "1|1" "0/0"
## HiC_scaffold_79_83163707 "0/0" "0/0" NA
## HiC_scaffold_79_86283512 NA "0/0" "0/0"
## HiC_scaffold_79_87123758 "1|1" "1|1" "1|1"
## HiC_scaffold_79_88362889 "0/0" "1/1" "1/1"
## HiC_scaffold_79_88599431 "0/0" "0/0" "0/0"
## HiC_scaffold_79_89322919 "0/0" "0/0" "1/1"
## HiC_scaffold_79_89331918 "0/0" "0/0" "0/0"
## HiC_scaffold_79_91340958 "1|1" "1|1" "0/0"
## HiC_scaffold_8_13649836 "1/1" "1|1" "1|1"
## HiC_scaffold_8_13650752 NA "1|1" "1|1"
## HiC_scaffold_8_23818233 "1/1" "1/1" "1/1"
## HiC_scaffold_8_24123972 "1|1" "1|1" "1|1"
## HiC_scaffold_8_24230791 "0/0" "0/0" "0/0"
## HiC_scaffold_8_24588423 NA "1|1" "0/0"
## HiC_scaffold_8_25348483 "0/0" "0/0" "0/1"
## HiC_scaffold_8_25421933 "0/0" "0/0" "0/0"
## HiC_scaffold_8_25772942 "1/1" "1/1" "0/1"
## HiC_scaffold_8_26289589 "0/0" "0/0" "1|1"
## HiC_scaffold_8_27602740 "0/1" "0/0" "0/0"
## HiC_scaffold_8_28159063 "0/0" "1/1" "0/1"
## HiC_scaffold_8_30829320 "0/0" "0/0" NA
## HiC_scaffold_8_31044084 "0/0" "1|1" "0/0"
## HiC_scaffold_8_31415507 "1|1" "0/0" "0/0"
## HiC_scaffold_8_32594682 "0|1" "0/0" "0/0"
## HiC_scaffold_80_3617847 "0|1" "0/1" "1|1"
## HiC_scaffold_80_5758183 "0/0" "0/0" "1|1"
## HiC_scaffold_80_6760006 "0/0" "0/0" "0|1"
## HiC_scaffold_80_6760037 NA "0/0" "0/1"
## HiC_scaffold_80_7772622 "1/1" "1/1" "1/1"
## HiC_scaffold_80_7919533 "1/1" "0/1" "0|2"
## HiC_scaffold_80_8110052 "0/0" "0/0" "0/0"
## HiC_scaffold_80_8193366 "1/1" NA "1/1"
## HiC_scaffold_80_8625784 "1/1" "1/1" "0/1"
## HiC_scaffold_80_8912846 NA "0/1" "0/1"
## HiC_scaffold_80_9544102 "0/1" "1/1" "0/0"
## HiC_scaffold_80_10770701 "1/1" "0/0" "0/1"
## HiC_scaffold_80_11590146 "0/0" NA "0/0"
## HiC_scaffold_80_16953653 "0/1" NA "0/1"
## HiC_scaffold_80_18938832 "0/0" NA "0/0"
## HiC_scaffold_80_19015946 "1/1" NA "1/1"
## HiC_scaffold_80_19404001 "1/1" "0/0" "1/1"
## HiC_scaffold_80_25346708 "1|1" NA "0/1"
## HiC_scaffold_80_37479851 "0/0" "1/1" "0/0"
## HiC_scaffold_80_37507516 "0/0" NA "1/1"
## HiC_scaffold_81_1187192 "0/0" "0/1" "0/0"
## HiC_scaffold_81_2689826 NA "1|1" "0|1"
## HiC_scaffold_81_2690751 "1|1" NA "0/0"
## HiC_scaffold_81_6614123 "0/1" NA "0/1"
## HiC_scaffold_81_7836855 "0/1" "0/0" "0/0"
## HiC_scaffold_81_10334868 "0/0" "0/0" "0/0"
## HiC_scaffold_81_10458752 NA "1/1" "1/1"
## HiC_scaffold_81_17515538 NA "1/1" "0/1"
## HiC_scaffold_81_40271282 NA "0/0" "0/0"
## HiC_scaffold_81_40271294 NA "1/1" "1/1"
## HiC_scaffold_81_41096427 "0/0" "1|1" "0/0"
## HiC_scaffold_81_41096444 "0/0" "1|1" "0/0"
## HiC_scaffold_81_43820595 "0/0" "0/0" "0/0"
## HiC_scaffold_81_43820732 "0/0" "0/0" "0/1"
## HiC_scaffold_81_43854278 "0/0" "1/1" NA
## HiC_scaffold_81_44804862 "0|1" "0/0" "1/1"
## HiC_scaffold_81_45063428 "0/0" NA "0|1"
## HiC_scaffold_81_45950590 "0/0" "0/0" "1/1"
## HiC_scaffold_81_46714752 "1|1" "1|1" "1|1"
## HiC_scaffold_81_46714759 "1|1" "1|1" "0/1"
## HiC_scaffold_81_47170397 "1|1" "1|1" "1|1"
## HiC_scaffold_81_47628201 "0/0" "0/0" "0/0"
## HiC_scaffold_81_48105216 "0/0" "0/0" "0/0"
## HiC_scaffold_81_48932070 "0/0" "0/0" "0/1"
## HiC_scaffold_81_54050146 "1/1" "1/1" "1/1"
## HiC_scaffold_82_5672063 "0/0" "0|1" "1/1"
## HiC_scaffold_82_8796823 "0/0" "1|1" "0/0"
## HiC_scaffold_82_13450959 "1/1" "1/1" "1/1"
## HiC_scaffold_82_26144442 "1/1" "0/0" NA
## HiC_scaffold_82_26147011 "0/0" "1|1" "1|1"
## HiC_scaffold_82_28907834 "0/0" "0/0" "1/1"
## HiC_scaffold_82_34413793 "0/1" "1|1" "0/0"
## HiC_scaffold_82_34413800 "0/1" "1|1" "0/0"
## HiC_scaffold_82_36173035 "0/0" "0/0" "1|1"
## HiC_scaffold_82_40539273 NA "0/0" "0/1"
## HiC_scaffold_82_41470256 "1/1" "0/0" "1/1"
## HiC_scaffold_83_23993605 "0/1" "0/0" "0/0"
## HiC_scaffold_83_35035961 "0/0" "0/1" "0/0"
## HiC_scaffold_83_43423618 NA "1|1" "0/0"
## HiC_scaffold_83_46920654 "1/1" "1/1" "0/0"
## HiC_scaffold_83_46934197 "1|1" "1|1" "0/0"
## HiC_scaffold_84_356301 "0/1" "1|1" "0/0"
## HiC_scaffold_84_5761817 "0/0" "1/1" NA
## HiC_scaffold_84_5769022 "1|1" "0/0" "0/0"
## HiC_scaffold_84_6288130 "1|1" "0/0" "0|1"
## HiC_scaffold_84_6288141 "1|1" "1|1" "1|1"
## HiC_scaffold_84_6288147 "0/0" "1|1" "0/0"
## HiC_scaffold_84_7069238 "1|1" "0/0" "1|1"
## HiC_scaffold_84_9131309 "0/0" "1/1" "0/0"
## HiC_scaffold_84_10148442 "0|1" "1/1" "0/1"
## HiC_scaffold_84_14659391 "1/1" "1/1" "1/1"
## HiC_scaffold_84_16302752 "2|2" "1/1" "1/1"
## HiC_scaffold_84_18463244 "0/0" "1/1" "1/1"
## HiC_scaffold_84_22909575 "1|1" "1|1" "1|1"
## HiC_scaffold_84_29275266 "0/0" NA "0/1"
## HiC_scaffold_84_31184610 "1/1" NA "1/1"
## HiC_scaffold_84_33093169 "0/0" "0/0" NA
## HiC_scaffold_84_37675180 "0/0" "0/0" "1/1"
## HiC_scaffold_84_39501814 "0/1" "0/0" "0/1"
## HiC_scaffold_84_50169438 "0|0" "0|1" "0|0"
## HiC_scaffold_84_50169445 "0|0" "0|1" "0|0"
## HiC_scaffold_84_51231025 "0/0" "1/1" "1/1"
## HiC_scaffold_85_9792207 "0/0" NA "0/0"
## HiC_scaffold_85_11784233 "1/1" "1|1" "0|1"
## HiC_scaffold_85_11911022 "1|1" NA "0/0"
## HiC_scaffold_85_11911142 "0/0" "1/1" "1/1"
## HiC_scaffold_85_11913828 NA "0/0" "0/0"
## HiC_scaffold_85_11913831 "0/0" "0/1" "1/1"
## HiC_scaffold_85_12353081 "0/1" "0/1" "0/1"
## HiC_scaffold_85_12414551 "1/1" NA "0/0"
## HiC_scaffold_85_13043967 "0/0" "0/0" "0/0"
## HiC_scaffold_85_13221888 "1/1" "0/0" "1/1"
## HiC_scaffold_85_27008863 "0/1" "0/1" "0/1"
## HiC_scaffold_85_28992264 "0/1" "1|1" "0|1"
## HiC_scaffold_85_28992268 "0|1" "1|1" "0/1"
## HiC_scaffold_85_64310850 "1|1" "0/0" "1|1"
## HiC_scaffold_85_65135112 "0/0" "0/0" "0/0"
## HiC_scaffold_85_65563529 "0/0" "0/0" "0/0"
## HiC_scaffold_86_1949664 "0/0" "0/0" "0/0"
## HiC_scaffold_86_5340423 NA "0|1" "1/1"
## HiC_scaffold_86_5483991 "0/1" "1|1" "0/0"
## HiC_scaffold_86_8928469 "0/0" "0/0" "1/1"
## HiC_scaffold_86_23727924 "1|1" "0|1" "1|1"
## HiC_scaffold_86_24825818 "1|1" "1|1" "0|0"
## HiC_scaffold_86_25333718 "1/1" "1/1" "1/1"
## HiC_scaffold_86_29668168 NA "0/0" "1|1"
## HiC_scaffold_86_30914243 "1|1" "0/0" "0/0"
## HiC_scaffold_86_32040320 "0/0" "0/0" "0/0"
## HiC_scaffold_86_32040329 "0/0" "0/0" "0/0"
## HiC_scaffold_86_32125061 NA "0/0" "0/0"
## HiC_scaffold_86_32144758 NA "0/1" "0/0"
## HiC_scaffold_86_32153692 "1/1" NA "0/1"
## HiC_scaffold_86_32534129 "1/1" "1/1" "1/1"
## HiC_scaffold_86_32605768 NA "0/0" "0/0"
## HiC_scaffold_86_36355399 NA "0/0" "0/1"
## HiC_scaffold_86_36357265 "1/1" "1/1" "1/1"
## HiC_scaffold_87_1253643 "0/0" NA "1/1"
## HiC_scaffold_87_2137958 "1/1" "0/0" "0/0"
## HiC_scaffold_87_3980100 "1/1" "1/1" "1/1"
## HiC_scaffold_87_4395923 "1/1" "1/1" "1/1"
## HiC_scaffold_87_5489328 "1|1" "1|1" "1|1"
## HiC_scaffold_87_6300441 "1/1" "0/0" "0/0"
## HiC_scaffold_87_16306904 "1/1" "0/0" "1/1"
## HiC_scaffold_87_44780945 "0/0" "0/0" "0/0"
## HiC_scaffold_88_5584327 "0/0" NA "0/0"
## HiC_scaffold_88_7104630 "1|1" "0/0" NA
## HiC_scaffold_88_7104631 "1|1" "1/1" NA
## HiC_scaffold_88_7104638 "1|1" "1|1" NA
## HiC_scaffold_88_7104639 "1|1" "0/0" NA
## HiC_scaffold_88_7104640 "0/0" "1|1" NA
## HiC_scaffold_88_7479340 "1/1" "1/1" "0/1"
## HiC_scaffold_88_8773607 "0/0" "1|1" NA
## HiC_scaffold_88_9883678 "1|1" "1|1" "1|1"
## HiC_scaffold_88_10878718 "1/1" "0/0" "0/0"
## HiC_scaffold_88_19365116 "0/1" "1/1" "1/1"
## HiC_scaffold_88_20477349 "1/1" NA "1/1"
## HiC_scaffold_88_20557885 "1/1" "0/0" "1/1"
## HiC_scaffold_89_675045 "1/1" "0/0" "0/0"
## HiC_scaffold_89_2815845 "0/0" "1|2" "0|2"
## HiC_scaffold_89_2843940 "0|1" "0/0" "0/0"
## HiC_scaffold_89_3018830 "1/1" "0/1" "1/1"
## HiC_scaffold_89_13745506 "0/0" "0/0" "0/0"
## HiC_scaffold_89_30006907 "0/0" "0/1" "1/1"
## HiC_scaffold_89_36509388 "0/0" "0|1" "1|1"
## HiC_scaffold_89_38703735 "1/1" "0/0" "1/1"
## HiC_scaffold_89_38764895 "1/1" "1/1" "1/1"
## HiC_scaffold_89_42052609 "0/0" "1/1" "0/0"
## HiC_scaffold_89_42054991 "0/0" "1/1" NA
## HiC_scaffold_89_44306958 "0/0" "1/1" "0/1"
## HiC_scaffold_89_44338206 "0/1" "0/0" "0/1"
## HiC_scaffold_89_45298973 "1/1" "1/1" "0/1"
## HiC_scaffold_9_3529921 "1/1" "0/1" "0/0"
## HiC_scaffold_9_5660454 NA "1|1" "0/0"
## HiC_scaffold_9_5660461 NA "1|1" "1|1"
## HiC_scaffold_9_5854070 "0/0" "1/1" "0/0"
## HiC_scaffold_9_6142415 NA NA "0|1"
## HiC_scaffold_9_6142436 NA NA "0|1"
## HiC_scaffold_9_6143781 "0/0" "0/0" "0/0"
## HiC_scaffold_9_6654825 "0/0" "0/0" "1/1"
## HiC_scaffold_9_7094545 "0/0" "1|1" "1|1"
## HiC_scaffold_9_7100208 "0/0" "1|1" "0|1"
## HiC_scaffold_9_7109988 "1/1" "0/0" "0/0"
## HiC_scaffold_9_7111922 "1|1" "1|1" "0/0"
## HiC_scaffold_9_8235781 "1/1" NA "0/0"
## HiC_scaffold_9_8279558 "1/1" "1/1" "0/0"
## HiC_scaffold_9_15679481 "0|1" "0/0" "0/1"
## HiC_scaffold_9_18082611 "0/0" "0/0" "0/0"
## HiC_scaffold_9_18090830 NA "0/0" "1/1"
## HiC_scaffold_9_30240531 "0/1" NA "1/1"
## HiC_scaffold_90_10418696 "1/1" "0/0" "0/0"
## HiC_scaffold_90_11470224 "0/0" "0/0" "0/0"
## HiC_scaffold_90_13593319 NA "0/0" "0/0"
## HiC_scaffold_90_16260161 "0/0" "1|1" "0/0"
## HiC_scaffold_90_22325499 "1/1" "1/1" "1/1"
## HiC_scaffold_90_23574204 "1|1" "0/1" "0/0"
## HiC_scaffold_90_23609908 "1|1" NA NA
## HiC_scaffold_90_23623078 NA "0/0" "0/0"
## HiC_scaffold_90_23626883 "1/1" NA "0/0"
## HiC_scaffold_90_23812663 NA "1/1" "1/1"
## HiC_scaffold_90_25939283 "0/1" "0/1" "0/0"
## HiC_scaffold_90_25985714 NA "0/1" NA
## HiC_scaffold_90_30751272 "0/1" "0/0" "0/0"
## HiC_scaffold_90_31232025 "0/0" NA "1|1"
## HiC_scaffold_90_31245699 "0/1" "0/0" "0|1"
## HiC_scaffold_90_31527975 "0/0" "0/0" "0/0"
## HiC_scaffold_90_31546172 NA "0/1" "0/1"
## HiC_scaffold_90_38511996 "0|1" NA "1|1"
## HiC_scaffold_90_38511999 "0|1" NA "1|1"
## HiC_scaffold_90_38517279 "0/0" "1/1" "1/1"
## HiC_scaffold_90_40624104 "0/1" "0/1" "0/1"
## HiC_scaffold_91_5644765 "1|1" "0/0" "0/0"
## HiC_scaffold_91_5867214 "0/0" "1|1" "1|1"
## HiC_scaffold_91_5867226 "0/0" "1|1" "1|1"
## HiC_scaffold_91_7704263 NA "1|1" "0|1"
## HiC_scaffold_91_7871360 "0/1" NA "1/1"
## HiC_scaffold_91_8538014 "1/1" "1/1" "1/1"
## HiC_scaffold_91_13230485 "1|1" "1|1" "1|1"
## HiC_scaffold_91_28696118 "1/1" "0/0" "0/0"
## HiC_scaffold_91_28696625 "0/0" "0/0" "1|1"
## HiC_scaffold_91_42177482 "0/0" "0|1" "0/0"
## HiC_scaffold_91_46813640 "2|2" "0/0" "0|2"
## HiC_scaffold_92_23783035 "0/0" "1/1" "0/0"
## HiC_scaffold_92_23783036 "0/0" "1/1" "0/0"
## HiC_scaffold_92_24712793 "0/0" "0/0" "0/0"
## HiC_scaffold_92_28698258 NA "1/1" "0/0"
## HiC_scaffold_92_40691582 "0/0" "0/0" "0/0"
## HiC_scaffold_92_43967712 "1/1" "1/1" "1/1"
## HiC_scaffold_92_47147572 "0/0" "0/0" "0|1"
## HiC_scaffold_92_49042714 "1|1" "1|1" "0|0"
## HiC_scaffold_92_49042715 "1|1" "1|1" "0|0"
## HiC_scaffold_92_53634002 "1/1" "1/1" NA
## HiC_scaffold_92_58211868 "0/0" NA "1|1"
## HiC_scaffold_92_60114155 "1|1" "0/0" "0/0"
## HiC_scaffold_92_63603483 NA "0/0" "1|1"
## HiC_scaffold_92_64797225 "0/2" "0/0" "0/0"
## HiC_scaffold_92_68367476 "0/0" "0/0" "0/0"
## HiC_scaffold_93_1912167 "0/1" "0/0" "0/0"
## HiC_scaffold_93_2485978 "0/0" "0/0" "0/0"
## HiC_scaffold_93_3227638 "0/0" "0/0" "0/0"
## HiC_scaffold_93_3227641 "1|1" "1|1" "1|1"
## HiC_scaffold_93_13971208 "1/1" NA "1/1"
## HiC_scaffold_93_13987080 "0/1" "0/0" "0/0"
## HiC_scaffold_93_21125468 "1/1" "0/0" "1/1"
## HiC_scaffold_93_21845293 "1/1" "1/1" "0/0"
## HiC_scaffold_93_21845310 "0/0" "0/0" "0|1"
## HiC_scaffold_93_21846342 "1/1" NA "0/0"
## HiC_scaffold_93_21846356 "0/0" "0/0" "0/0"
## HiC_scaffold_93_22589723 "0/0" "0/0" "1/1"
## HiC_scaffold_93_22619278 NA "0/0" "1/1"
## HiC_scaffold_93_22631258 "0/0" "1|1" "1|1"
## HiC_scaffold_93_22631266 "0/0" "1|1" "1|1"
## HiC_scaffold_94_3110102 "1/1" NA "0/1"
## HiC_scaffold_94_3205919 "1/1" "0/0" "1/1"
## HiC_scaffold_94_9023846 "0/0" "1/1" "0/1"
## HiC_scaffold_94_11572820 "1/1" "0/0" "1/1"
## HiC_scaffold_94_12368532 "0/1" "0/0" "1/1"
## HiC_scaffold_94_42179418 "1/1" "0/1" "1/1"
## HiC_scaffold_94_42179519 "1/1" NA "0/0"
## HiC_scaffold_94_51646206 "0/0" NA "0/0"
## HiC_scaffold_94_52781289 "1/1" "0/0" "0/0"
## HiC_scaffold_94_53790035 "0/0" NA "0/1"
## HiC_scaffold_94_53792738 "1/1" "1/1" "1/1"
## HiC_scaffold_94_56768905 "1|1" "1|1" "1|1"
## HiC_scaffold_946_81276 "0/0" "1/1" NA
## HiC_scaffold_95_3189690 "1/1" "0/0" "1/1"
## HiC_scaffold_95_4397298 "1/1" "1|1" "0/1"
## HiC_scaffold_95_9469157 "0|1" "0/0" "0/0"
## HiC_scaffold_95_10641411 "0/0" "0/1" "1/1"
## HiC_scaffold_95_10949821 "0/0" "0/0" "1/1"
## HiC_scaffold_95_12993394 "0|1" "1|1" NA
## HiC_scaffold_95_15515793 "1|1" "1|1" "1|1"
## HiC_scaffold_95_15608785 "1|1" "0|1" "0/0"
## HiC_scaffold_95_15609137 "1/1" "0/0" NA
## HiC_scaffold_95_16295316 "0/0" NA "1/1"
## HiC_scaffold_95_22656165 "0/0" "0/0" "0|1"
## HiC_scaffold_95_25885727 "0/0" "0/0" "0/1"
## HiC_scaffold_96_10460019 "1/1" "1/1" "0/0"
## HiC_scaffold_96_27155785 "1/1" "1/1" "1/1"
## HiC_scaffold_96_37939434 "0|1" "0/0" "1/1"
## HiC_scaffold_96_51115048 "0/1" "1/1" "1/1"
## HiC_scaffold_96_51116511 "0/1" "1|1" "1/1"
## HiC_scaffold_96_51915040 "0/0" "0/0" "1|1"
## HiC_scaffold_96_52681287 "0/0" "0/0" "0/0"
## HiC_scaffold_96_53276519 "1/1" NA "1/1"
## HiC_scaffold_97_1736926 "0/0" "1|1" NA
## HiC_scaffold_97_1736994 "0/0" "1|1" "1|1"
## HiC_scaffold_97_3863543 NA NA "1/1"
## HiC_scaffold_97_4200445 "0/1" "0/0" "1/1"
## HiC_scaffold_97_4799162 "0/0" "0/1" "1/1"
## HiC_scaffold_97_5027892 "1/1" "0/0" "1/1"
## HiC_scaffold_97_8007933 "0/1" "1|1" "1/1"
## HiC_scaffold_97_17997210 "0|1" "0/0" "0/0"
## HiC_scaffold_97_18604647 "1|1" "1/1" "1/1"
## HiC_scaffold_97_20239636 NA NA "0/0"
## HiC_scaffold_98_15154096 "1|1" "0/0" "0|1"
## HiC_scaffold_98_22342667 "1/1" "0|1" "0|1"
## HiC_scaffold_98_22634293 "1|1" "0/0" "1|1"
## HiC_scaffold_98_22634294 "1|1" "0/0" "1|1"
## HiC_scaffold_98_22721138 "1/1" NA "1/1"
## HiC_scaffold_98_22869378 "0/0" "0/0" "0/0"
## HiC_scaffold_98_24108405 "0/0" "1/1" "0/0"
## HiC_scaffold_98_27359592 "1|1" "0/0" "0/0"
## HiC_scaffold_98_28549834 NA "1/1" "0/1"
## HiC_scaffold_98_28867520 "1|1" "0|1" "1|1"
## HiC_scaffold_98_28867524 "2|2" "0|2" "1|1"
## HiC_scaffold_98_29431717 "1|1" "1|1" "0/1"
## HiC_scaffold_98_29675109 "0/0" "1/1" "0/1"
## HiC_scaffold_99_1163244 "0/1" "0/0" "0/0"
## HiC_scaffold_99_1451611 "1/1" "1/1" "0/0"
## HiC_scaffold_99_2021961 "0/0" "0/0" "0/0"
## HiC_scaffold_99_5134392 "0/0" "0/0" NA
## HiC_scaffold_99_5239109 "1/1" "1/1" "1/1"
## HiC_scaffold_99_6917738 "1|1" "0/0" "1|1"
## HiC_scaffold_99_11221970 "0/0" "0/0" "1|1"
## HiC_scaffold_99_25982503 NA "1/1" "1/1"
## Tank_16_Crab_1 Tank_16_Crab_2 Tank_16_Crab_4
## HiC_scaffold_1_2523394 "1/1" "0/0" "0/1"
## HiC_scaffold_1_2542157 "0/0" "0/1" NA
## HiC_scaffold_1_2647806 "1/1" "1/1" "0/0"
## HiC_scaffold_1_2970226 "0/0" "1|1" "1|1"
## HiC_scaffold_1_3329447 NA "1/1" "0/0"
## HiC_scaffold_1_3795100 "0|1" "0|1" "1|1"
## HiC_scaffold_10_2221345 "0/0" "1|1" NA
## HiC_scaffold_10_2299490 "0|1" "0|1" "0/0"
## HiC_scaffold_10_2565301 "1/1" "0/0" "0/0"
## HiC_scaffold_10_3864355 "0/0" NA "1/1"
## HiC_scaffold_10_4319900 "0/0" "1|1" "0/0"
## HiC_scaffold_10_4319907 "0/0" "1|1" "0/0"
## HiC_scaffold_10_5404579 "0/0" "0/0" "0/0"
## HiC_scaffold_10_5843373 "0/0" "0/0" "0/0"
## HiC_scaffold_100_854947 "1|1" "0/0" "0/0"
## HiC_scaffold_100_1070817 "0|1" "0/0" "1/1"
## HiC_scaffold_100_2002094 "0/0" "0|1" "1|1"
## HiC_scaffold_100_2002097 "0/0" "0|1" "1|1"
## HiC_scaffold_100_2010331 "1|1" "1|1" NA
## HiC_scaffold_100_5186498 "0/0" "1/1" "1/1"
## HiC_scaffold_100_5828477 "0/0" "1/1" "0/0"
## HiC_scaffold_100_6470419 "0|1" "1|1" "0/0"
## HiC_scaffold_100_6739225 "0/0" "0/0" "0/0"
## HiC_scaffold_100_6739258 "0/0" "0/0" NA
## HiC_scaffold_100_6739264 "0/0" "0/0" NA
## HiC_scaffold_100_6907177 "1/1" "0/0" "1/1"
## HiC_scaffold_100_8384481 "0/0" "0/0" "1|1"
## HiC_scaffold_100_8384495 "0/0" "0/0" "1|1"
## HiC_scaffold_100_9451470 "0/0" "0/0" "0/2"
## HiC_scaffold_100_10464574 "1/1" "0/1" "0/0"
## HiC_scaffold_100_11934792 NA "1|1" "1|1"
## HiC_scaffold_100_11980177 "1|1" "1/1" "1/1"
## HiC_scaffold_100_18465760 "0/0" "0/0" "0/0"
## HiC_scaffold_100_18465762 "0/0" "0/0" "0/0"
## HiC_scaffold_100_18466205 "0/0" NA "0/0"
## HiC_scaffold_100_31738115 "1/1" "0|1" "1/1"
## HiC_scaffold_100_44227362 "0/0" "1|1" "0/0"
## HiC_scaffold_101_12808961 "0/0" NA "0/0"
## HiC_scaffold_101_13897149 "0/1" "1/1" "0/0"
## HiC_scaffold_101_18337279 "1/1" NA "0/0"
## HiC_scaffold_101_20800167 "1/1" "1/1" "1/1"
## HiC_scaffold_102_2260041 "0/0" "0/1" "0/1"
## HiC_scaffold_102_8734519 "1|1" "0/0" NA
## HiC_scaffold_102_10233999 "1|1" NA "1|1"
## HiC_scaffold_102_11446042 "0/0" "0/0" "0/0"
## HiC_scaffold_102_15918694 "0/0" "1|1" "0/0"
## HiC_scaffold_102_15935667 "0/0" "0/0" "0/0"
## HiC_scaffold_102_17442643 "1/1" "0/0" "1/1"
## HiC_scaffold_102_17608969 "0/1" NA "1/1"
## HiC_scaffold_102_20180185 "1/1" "0/0" "1/1"
## HiC_scaffold_102_24788723 "0/1" NA "1/1"
## HiC_scaffold_102_25423729 "1|1" "1|1" "1|1"
## HiC_scaffold_102_39755142 "1/1" NA "0/1"
## HiC_scaffold_102_52046978 "1/1" "0/1" "0/0"
## HiC_scaffold_1027_34152 "1/1" "0/1" "1/1"
## HiC_scaffold_103_601715 "0/0" "0/0" NA
## HiC_scaffold_103_2891384 "0/1" NA "1/1"
## HiC_scaffold_103_8191270 "1|1" "0/0" "0/0"
## HiC_scaffold_103_9521272 "1/1" "1/1" "1/1"
## HiC_scaffold_103_14768909 "0/0" "0/0" NA
## HiC_scaffold_103_19312119 "1|1" "1|1" "1/1"
## HiC_scaffold_103_21284866 NA "1/1" "1|1"
## HiC_scaffold_103_31428453 "1|1" "0|1" NA
## HiC_scaffold_103_42567396 "0/1" "0/1" "0/1"
## HiC_scaffold_103_45921571 "0|1" "1|1" "0/0"
## HiC_scaffold_103_45921573 "0|1" "1|1" "0/0"
## HiC_scaffold_103_49592022 NA "1|1" "1|1"
## HiC_scaffold_103_49620132 "0|1" "1|1" "1|1"
## HiC_scaffold_103_50440915 "1|1" "0/0" NA
## HiC_scaffold_103_51944137 NA "1/1" "0/1"
## HiC_scaffold_103_54308582 "0/0" "0/0" "1|1"
## HiC_scaffold_103_54424067 "0/0" "1|1" "1|1"
## HiC_scaffold_103_56932900 "1/1" "1/1" "1/1"
## HiC_scaffold_103_57470264 "1|1" "1|1" "1|1"
## HiC_scaffold_104_7771140 "1/1" "1/1" "0/0"
## HiC_scaffold_104_9103028 "0/1" "1/1" "1/1"
## HiC_scaffold_104_10633168 "0/0" "0/0" "0/1"
## HiC_scaffold_104_18917031 NA "1/1" "0/1"
## HiC_scaffold_104_20851902 "0/1" "1/1" "1/1"
## HiC_scaffold_104_24451803 NA "0/1" "0/0"
## HiC_scaffold_104_28597688 "0/0" "0/0" NA
## HiC_scaffold_104_40927999 "0/0" "0/1" "0/0"
## HiC_scaffold_104_46490074 "1/1" "0/0" "0/1"
## HiC_scaffold_104_49759053 "1/1" "0/0" "1/1"
## HiC_scaffold_104_57267896 "0/1" "0/1" "0/0"
## HiC_scaffold_104_62570010 "1/1" NA "0/0"
## HiC_scaffold_11_32804173 "0/0" NA "1/1"
## HiC_scaffold_11_34516508 "1/1" "1/1" NA
## HiC_scaffold_11_35332996 "0/0" NA "0/0"
## HiC_scaffold_11_35904027 NA "1|1" "1/1"
## HiC_scaffold_11_41539793 "0/1" "1/1" "1|1"
## HiC_scaffold_11_41604080 "1|1" "1|1" "1|1"
## HiC_scaffold_11_42855323 "0/1" "1/1" NA
## HiC_scaffold_11_45339409 "0/1" "0/0" "0/0"
## HiC_scaffold_11_45339410 "0/1" "1|1" "0/1"
## HiC_scaffold_11_47544035 "0/0" "0/1" "0/0"
## HiC_scaffold_12_7515164 "0/1" "0/1" "1/1"
## HiC_scaffold_12_12640100 "1/1" NA "0/1"
## HiC_scaffold_12_12826705 "0/0" NA "0|1"
## HiC_scaffold_12_14899285 "0/0" "1/1" "0/0"
## HiC_scaffold_12_17465672 "0/0" "0/0" NA
## HiC_scaffold_12_22770710 "0/0" "1|1" "1|1"
## HiC_scaffold_12_32318964 "1|1" "1|1" "0|1"
## HiC_scaffold_12_35136373 "0/0" "0/0" "0/0"
## HiC_scaffold_12_40687860 "0/0" NA "0/0"
## HiC_scaffold_13_2938168 "1/1" "0/0" "1/1"
## HiC_scaffold_13_20350974 "1/1" "1/1" "1/1"
## HiC_scaffold_13_27759554 "0/0" "0/0" NA
## HiC_scaffold_13_28146828 "0/0" NA "0/0"
## HiC_scaffold_13_28146830 "0/0" NA "0/0"
## HiC_scaffold_13_28925343 "1/1" NA NA
## HiC_scaffold_13_31913129 "0/0" "1/1" "0/0"
## HiC_scaffold_13_32078924 "0/0" "0/0" NA
## HiC_scaffold_13_33864805 "1/1" "1/1" "1/1"
## HiC_scaffold_13_34892542 "0/0" "0/0" "1/1"
## HiC_scaffold_13_34893103 "1/1" "0/1" "0/0"
## HiC_scaffold_13_35762551 NA "0/0" "1|1"
## HiC_scaffold_13_35881745 NA "1|1" "1/1"
## HiC_scaffold_13_35881749 NA "1|1" "0/1"
## HiC_scaffold_14_3843214 NA "1/1" "1/1"
## HiC_scaffold_14_25884262 "0/2" "0/0" "2|2"
## HiC_scaffold_14_27050415 "1/1" "1/1" "0/1"
## HiC_scaffold_14_27118495 "1/1" NA "1/1"
## HiC_scaffold_14_27277222 "1/1" "0/1" "0/0"
## HiC_scaffold_14_29215814 "0/0" "0/0" "1|1"
## HiC_scaffold_15_2460398 "1|1" "0/0" NA
## HiC_scaffold_15_2462980 "0/0" "1/1" "0/0"
## HiC_scaffold_15_2467289 "1/1" "0/1" "1/1"
## HiC_scaffold_15_5669141 "1/1" "1/1" "1/1"
## HiC_scaffold_15_13700694 "0/2" NA "0/0"
## HiC_scaffold_15_17825275 "1|1" "1|1" NA
## HiC_scaffold_15_19938475 "0/1" "0/0" "0/0"
## HiC_scaffold_15_23865956 "0/0" "1|1" "1|1"
## HiC_scaffold_15_28837774 "0/0" "0/1" "1/1"
## HiC_scaffold_15_28837810 "0/0" "0/1" "0/0"
## HiC_scaffold_15_28837823 "0/0" "1|1" "0|1"
## HiC_scaffold_15_28837835 "0/0" "1|1" "1|1"
## HiC_scaffold_15_28837841 "0/0" "0/0" "0/0"
## HiC_scaffold_15_28837854 "0/1" "0/1" "1/1"
## HiC_scaffold_15_34827832 "0/1" NA "0/0"
## HiC_scaffold_15_34893807 "0/1" NA "0/0"
## HiC_scaffold_15_35327348 "0/1" "0/0" "1/1"
## HiC_scaffold_15_42161112 "1|1" "0/0" "0/0"
## HiC_scaffold_15_42164926 "1|1" "0|1" "0|1"
## HiC_scaffold_15_42164946 "1/1" "1/1" "1/1"
## HiC_scaffold_15_46289572 "0/0" "0/1" "1/1"
## HiC_scaffold_15_50591576 "0/0" "1|1" NA
## HiC_scaffold_15_50759128 "0/1" "1/1" "1/1"
## HiC_scaffold_15_51188336 "1|1" "0/1" "0/0"
## HiC_scaffold_15_54726640 "1/1" "1/1" "1/1"
## HiC_scaffold_15_54788235 "1/1" "0/0" "0/0"
## HiC_scaffold_15_56162375 "0/0" "0/0" "1|1"
## HiC_scaffold_15_61091106 "1/1" "1/1" NA
## HiC_scaffold_15_61464359 "1/1" "1/1" NA
## HiC_scaffold_15_61510386 "0/1" "0/1" "0/0"
## HiC_scaffold_15_62309788 "1|1" "0/0" "0/0"
## HiC_scaffold_15_62309793 "1|1" "0/0" "0/0"
## HiC_scaffold_15_62771254 "1/1" "1/1" "0/1"
## HiC_scaffold_15_63493927 "0/1" "1/1" "1/1"
## HiC_scaffold_15_64997502 "0/0" "1/1" "0/0"
## HiC_scaffold_15_65007865 "1|1" "1|1" "1/1"
## HiC_scaffold_15_65007879 "0/0" "1|1" "0/0"
## HiC_scaffold_15_66038529 "0/1" "1/1" "0/1"
## HiC_scaffold_15_69811281 "1/1" NA "1/1"
## HiC_scaffold_16_14205925 "0/0" "0/1" "0/0"
## HiC_scaffold_16_30404047 "0/1" "0/1" "0/0"
## HiC_scaffold_16_57413288 "1|1" "1|1" NA
## HiC_scaffold_16_63687578 "0/0" "1|1" NA
## HiC_scaffold_16_74138787 "0/0" "0/1" "0/0"
## HiC_scaffold_16_74140106 "1/1" "0|1" "0/0"
## HiC_scaffold_16_76276015 "1/1" "0/0" "0/0"
## HiC_scaffold_17_11390873 "0|1" "0|1" NA
## HiC_scaffold_17_12551128 "0/1" "0/0" NA
## HiC_scaffold_17_16615612 "0/1" "0/1" "0/1"
## HiC_scaffold_17_18838093 "0/1" NA NA
## HiC_scaffold_17_22801072 NA "1/1" "0/1"
## HiC_scaffold_17_23788599 "0/0" "0/1" "0/0"
## HiC_scaffold_17_29383895 "1/1" "0/0" "0/0"
## HiC_scaffold_17_29618771 NA "1/1" "1/1"
## HiC_scaffold_17_29976139 "1/1" NA "0/0"
## HiC_scaffold_17_31107213 "0/1" "0/1" NA
## HiC_scaffold_17_32493792 "1/1" "0/0" "0/0"
## HiC_scaffold_17_33732050 "1/1" NA "0/0"
## HiC_scaffold_17_33801314 "1|1" "0/0" "1|1"
## HiC_scaffold_17_34081889 NA "1/1" "1/1"
## HiC_scaffold_18_227565 "0/0" "1/1" NA
## HiC_scaffold_18_1213486 "1/1" "0/0" NA
## HiC_scaffold_18_1701312 "1/1" "2/2" "0/0"
## HiC_scaffold_18_3506437 "1/1" "0/0" "0/0"
## HiC_scaffold_18_6304978 "1/1" "1/1" "1/1"
## HiC_scaffold_18_6351493 "1/1" "1/1" "1/1"
## HiC_scaffold_18_6358009 "0/0" "1/1" "1/1"
## HiC_scaffold_18_10770701 "0/0" "0/0" "1/1"
## HiC_scaffold_18_13342858 "0/0" "1/1" "1/1"
## HiC_scaffold_18_20045832 "0/0" NA "0/0"
## HiC_scaffold_18_22682683 "0/0" "0/0" "0/0"
## HiC_scaffold_18_26337790 "0/0" "0/0" "0/0"
## HiC_scaffold_18_48929148 "1|1" NA "0/0"
## HiC_scaffold_18_51490626 "0/1" "0/0" "0/0"
## HiC_scaffold_18_53723137 "0/0" "0/1" NA
## HiC_scaffold_18_54496637 "1|1" "0/0" "1|1"
## HiC_scaffold_18_55294388 "0/1" NA "1/1"
## HiC_scaffold_19_279726 "1/1" "0/0" "1/1"
## HiC_scaffold_19_6426572 "0/0" "0/0" "1|1"
## HiC_scaffold_19_6575887 "0/0" "0/0" "0/0"
## HiC_scaffold_19_7755254 "0/1" "0/1" NA
## HiC_scaffold_19_9301421 "1|1" "0/0" "1|1"
## HiC_scaffold_19_9357388 NA "1|1" "1|1"
## HiC_scaffold_19_9778841 "1/1" "0/0" "1/1"
## HiC_scaffold_19_10928976 "0/0" "1|1" "0/0"
## HiC_scaffold_19_10928980 "0/0" "1|1" "0/0"
## HiC_scaffold_19_10928982 "1|1" "0/0" "1|1"
## HiC_scaffold_19_11106347 "0/0" NA "0/1"
## HiC_scaffold_19_11590139 "0/0" "0/0" NA
## HiC_scaffold_19_11665300 "1/1" NA "0/1"
## HiC_scaffold_19_14793640 "0/0" NA NA
## HiC_scaffold_19_22112743 "0|0" NA "0/0"
## HiC_scaffold_19_25473671 "1/1" "1/1" "1/1"
## HiC_scaffold_19_25473692 "0/0" "0/1" "0/0"
## HiC_scaffold_19_28110829 "1|1" "1|1" "1|1"
## HiC_scaffold_19_28465002 "0/0" "0|1" "1/1"
## HiC_scaffold_19_28465167 "0|1" "0/0" "1|1"
## HiC_scaffold_19_30106869 "0/0" "0|1" "1|1"
## HiC_scaffold_19_52538858 "1/1" "1/1" "1/1"
## HiC_scaffold_19_52596196 "0/0" "0/0" "0|1"
## HiC_scaffold_19_53482993 "0/0" "0/0" "1/1"
## HiC_scaffold_19_54312637 "1/1" NA NA
## HiC_scaffold_19_59345841 "0/0" "1|1" "1|1"
## HiC_scaffold_2_3296144 NA "1|1" "1|1"
## HiC_scaffold_2_3418589 "0/1" "1/1" "0/0"
## HiC_scaffold_2_3864060 "1/1" NA "0/0"
## HiC_scaffold_2_4104755 "0/0" "0/0" "2|2"
## HiC_scaffold_2_4104758 "0/0" "0/0" "2|2"
## HiC_scaffold_2_8316721 "0|1" "0|1" NA
## HiC_scaffold_2_9098999 "0/1" "0/1" "0/0"
## HiC_scaffold_2_10457537 "0/0" "0/0" "0/0"
## HiC_scaffold_2_19048125 "1/1" NA "0/0"
## HiC_scaffold_2_21748201 "1/1" "0/0" "1/1"
## HiC_scaffold_2_33187764 "1|1" "1|1" "0/0"
## HiC_scaffold_2_33187770 "1|1" "1|1" "0/0"
## HiC_scaffold_2_33187959 "1/1" "0/0" "0/0"
## HiC_scaffold_2_41603929 "1/1" "0/0" NA
## HiC_scaffold_2_52233191 "0/0" "1/1" "0/0"
## HiC_scaffold_2_52400748 "1/1" "1|1" "1/1"
## HiC_scaffold_2_52403793 "1|1" "1|1" "1|1"
## HiC_scaffold_2_52799130 "1/1" NA "1/1"
## HiC_scaffold_20_10332897 "0/1" "0/0" "1/1"
## HiC_scaffold_20_17198418 "0/1" "0/1" "0/0"
## HiC_scaffold_20_17915398 "0/0" "1|1" NA
## HiC_scaffold_20_18872955 "0/0" "0/0" "0/0"
## HiC_scaffold_20_19055301 "1/1" "1/1" "1/1"
## HiC_scaffold_20_19150094 "1/1" "0/1" NA
## HiC_scaffold_20_20651022 "1|1" "0/0" "0/1"
## HiC_scaffold_20_22651296 "1/1" "1/1" "1/1"
## HiC_scaffold_21_2009156 "0|1" "0|0" "0|1"
## HiC_scaffold_21_2435648 "0/1" "1/1" "1/1"
## HiC_scaffold_21_7164210 "1|1" "0/0" "0/0"
## HiC_scaffold_21_9786512 "0/1" "1/1" "0/0"
## HiC_scaffold_21_12424922 "1|1" "1/1" "1/1"
## HiC_scaffold_21_17966833 "1/1" "1/1" "1/1"
## HiC_scaffold_21_19025429 "1/1" NA "1/1"
## HiC_scaffold_21_20058318 "1/1" "0/0" "0/0"
## HiC_scaffold_21_20562855 "0|1" "0/0" "0/0"
## HiC_scaffold_21_20661860 "0/0" "0/1" "1|1"
## HiC_scaffold_21_20895395 "0/0" "0|1" "1|1"
## HiC_scaffold_21_21158811 "1|1" "2|2" "1|1"
## HiC_scaffold_21_22250857 "0/1" "0/1" "0|1"
## HiC_scaffold_21_22250866 "1|1" "1|1" "1|1"
## HiC_scaffold_21_22257737 "1/1" "0/0" "1/1"
## HiC_scaffold_21_22644667 "1|1" "1|1" NA
## HiC_scaffold_21_22644673 "1|1" "1|1" NA
## HiC_scaffold_21_22666888 "0/0" NA "0/0"
## HiC_scaffold_21_23905416 "1|1" "0/1" "1|1"
## HiC_scaffold_21_23981651 "1|1" "0/0" "1|1"
## HiC_scaffold_21_24287068 "0/0" "1|1" "0/0"
## HiC_scaffold_21_30798434 "1|1" "1|1" "0/0"
## HiC_scaffold_21_35006232 "0/0" NA "1/1"
## HiC_scaffold_21_35779294 "1/1" "0/0" "1|1"
## HiC_scaffold_22_124910 "0/0" "0/1" "0/0"
## HiC_scaffold_22_751023 "0/0" "1|1" "1/1"
## HiC_scaffold_22_1042644 NA NA "0/0"
## HiC_scaffold_22_1044708 "0/0" "1/1" "0/0"
## HiC_scaffold_22_2174911 "0/0" "1/1" "0/0"
## HiC_scaffold_22_3431122 NA "0/0" "0|1"
## HiC_scaffold_22_3446787 "0/0" "0|1" "1|1"
## HiC_scaffold_22_3451756 NA "0/0" NA
## HiC_scaffold_22_3720435 "1/1" "0/0" "0/1"
## HiC_scaffold_22_4065466 "1|1" "1|1" "0/0"
## HiC_scaffold_22_4739889 "0/0" NA "1|1"
## HiC_scaffold_22_4918263 "0|1" "0/0" "0/0"
## HiC_scaffold_22_5750008 "1/1" "1/1" NA
## HiC_scaffold_22_5769942 "0/0" "1|1" NA
## HiC_scaffold_22_28264522 "0/0" "0/0" NA
## HiC_scaffold_22_28265115 "0/1" "1/1" "0/0"
## HiC_scaffold_22_29205851 NA "2/2" NA
## HiC_scaffold_22_29822340 "1/1" "1/1" "0/0"
## HiC_scaffold_22_30797357 "0|1" "1/1" "0/0"
## HiC_scaffold_22_32042610 "1|1" "1|1" "1|1"
## HiC_scaffold_23_11215327 "0/0" NA "0/0"
## HiC_scaffold_23_27081333 "1/1" "0|1" "0|1"
## HiC_scaffold_23_28672255 "1/1" "0/1" "0/1"
## HiC_scaffold_23_29218828 "0/1" "0|1" NA
## HiC_scaffold_23_32528768 "1|1" "1|1" "1|1"
## HiC_scaffold_23_32669383 "0/0" "0/1" "0/1"
## HiC_scaffold_23_33199663 NA "1/1" "0/1"
## HiC_scaffold_23_33245843 NA "0/0" "0/1"
## HiC_scaffold_23_40824545 "0/0" NA NA
## HiC_scaffold_23_41504669 "1/1" "1/1" "0/0"
## HiC_scaffold_24_16622654 "1/1" "0/0" "1/1"
## HiC_scaffold_24_16622681 "0/1" "0/0" "1/1"
## HiC_scaffold_24_19851560 "1|1" NA "1|1"
## HiC_scaffold_24_20590563 "1/1" "0/0" "1/1"
## HiC_scaffold_24_27745754 "1/1" "1/1" "0/1"
## HiC_scaffold_24_28763699 "1|1" "1|1" "1|1"
## HiC_scaffold_24_28763703 "1|1" "1|1" "1|1"
## HiC_scaffold_25_4135969 "1/1" "0/0" "0/0"
## HiC_scaffold_25_4201677 "0/1" NA NA
## HiC_scaffold_25_5872831 "0/0" "0/1" "0/1"
## HiC_scaffold_25_6879627 NA "1/1" "0/0"
## HiC_scaffold_25_8172813 "1/1" "1/1" "0/0"
## HiC_scaffold_25_9969507 NA "1|1" "0/1"
## HiC_scaffold_25_10691336 "0/1" "0/0" "0/0"
## HiC_scaffold_25_21286462 "1/1" NA "0/0"
## HiC_scaffold_26_4086662 "1|1" "1|1" "0/0"
## HiC_scaffold_26_7539671 "1|1" "0/0" "0/1"
## HiC_scaffold_26_8348511 "0/0" "1/1" "0/0"
## HiC_scaffold_26_9043748 "1|1" "1|1" NA
## HiC_scaffold_26_9045655 "1|1" "0/0" "1/1"
## HiC_scaffold_26_11253181 "0/0" "0/0" "0/0"
## HiC_scaffold_26_17828344 "1/1" "1/1" "1|1"
## HiC_scaffold_26_17932520 "1/1" "0/0" "1/1"
## HiC_scaffold_26_17941459 "1/1" "0/0" "0/0"
## HiC_scaffold_26_17960877 "1|1" "1/1" "1/1"
## HiC_scaffold_26_18284041 "0/0" "0/1" "0/0"
## HiC_scaffold_26_18288701 "1|1" "1|1" "1|1"
## HiC_scaffold_26_18294422 "0/0" "1/1" "0|0"
## HiC_scaffold_26_21307365 "0/0" NA "1/1"
## HiC_scaffold_26_22159924 "1/1" "0/1" "1/1"
## HiC_scaffold_26_22161535 "1/1" "1/1" "1|1"
## HiC_scaffold_26_24794176 "0/0" "1/1" "0/1"
## HiC_scaffold_26_28538113 "1|1" "1|1" "1|1"
## HiC_scaffold_26_29031357 "1/1" "1|1" "1/1"
## HiC_scaffold_26_29163462 "0/0" "0/0" "0/1"
## HiC_scaffold_26_42631018 "1|1" "0/0" "0/0"
## HiC_scaffold_26_42634814 "1/1" "1/1" NA
## HiC_scaffold_26_43483190 "0/0" NA "0/0"
## HiC_scaffold_26_49955889 "0/1" "0/0" "1/1"
## HiC_scaffold_26_58342510 "0/0" "0/0" "0/0"
## HiC_scaffold_27_1496120 "0/0" NA "0/0"
## HiC_scaffold_27_1947057 NA "0/0" "0/0"
## HiC_scaffold_27_2359058 "0|1" "1|1" "1|1"
## HiC_scaffold_27_2699645 "1/1" "0/0" "0/0"
## HiC_scaffold_27_4425475 "1|1" NA "1|1"
## HiC_scaffold_27_7539469 NA "0/0" NA
## HiC_scaffold_27_7777122 "1|1" "0/1" "0/1"
## HiC_scaffold_27_16657070 "0/1" "0/0" "1/1"
## HiC_scaffold_27_24539255 "0/0" "0/1" "0/0"
## HiC_scaffold_27_34642359 "1|1" "0/0" "1|1"
## HiC_scaffold_27_34647277 "0/0" "0/0" "2|2"
## HiC_scaffold_27_35380535 "1/1" "1/1" "1/1"
## HiC_scaffold_27_35383230 NA "0/0" "0/0"
## HiC_scaffold_28_21261390 "0/0" "0/0" "1|1"
## HiC_scaffold_28_24490442 "1/1" "0/0" "0/0"
## HiC_scaffold_28_25601927 "1/1" "1/1" "0/0"
## HiC_scaffold_28_31793968 "0/0" "0/1" "0/0"
## HiC_scaffold_28_32126687 "0/0" "1/1" "0/0"
## HiC_scaffold_28_34779518 "0/0" NA "1/1"
## HiC_scaffold_28_36042491 "1/1" "1/1" "0/0"
## HiC_scaffold_28_36692361 "0/0" "0/1" "0/0"
## HiC_scaffold_28_38672993 "0/1" "0/1" "0/0"
## HiC_scaffold_28_39640526 "0/0" "1/1" "1/1"
## HiC_scaffold_28_40169242 "1/1" NA "1/1"
## HiC_scaffold_28_41059640 "1|1" "1|1" "1|1"
## HiC_scaffold_28_42514830 "0/1" "0/0" "1|1"
## HiC_scaffold_28_42601570 "0/1" "0/0" "0/0"
## HiC_scaffold_28_42601585 "0/1" "1/1" NA
## HiC_scaffold_28_43018803 "1/1" "1/1" NA
## HiC_scaffold_28_43036165 "0/1" "0/1" "0/1"
## HiC_scaffold_29_344317 "0/0" "0/0" "1/1"
## HiC_scaffold_29_3811176 NA "1/1" "1/1"
## HiC_scaffold_29_6073993 "0/0" "0/0" "0/0"
## HiC_scaffold_29_6415222 "0/0" "0/0" NA
## HiC_scaffold_29_8224424 "1/1" "0/0" "0/0"
## HiC_scaffold_29_11153624 "1/1" "1/1" "0/1"
## HiC_scaffold_29_11153712 "1/1" "0/0" "0/1"
## HiC_scaffold_29_11167966 "0/0" "1/1" "0/0"
## HiC_scaffold_29_11491468 "1/1" "0/0" "0/0"
## HiC_scaffold_29_12103558 "1|1" "1|1" "0/0"
## HiC_scaffold_29_14279322 "0/0" "0/0" "0/0"
## HiC_scaffold_29_14913907 "0/0" "0/0" "1/1"
## HiC_scaffold_29_16378276 "1/1" NA "1/1"
## HiC_scaffold_29_20635937 "0/0" "0/0" "0/1"
## HiC_scaffold_29_20636787 NA "0/0" "0/1"
## HiC_scaffold_29_22560215 "1/1" "0/0" "1/1"
## HiC_scaffold_29_22561144 "1/1" "0|1" "0/0"
## HiC_scaffold_29_24017849 "0/0" "2|2" NA
## HiC_scaffold_29_31603590 "0/1" "0/0" "0/0"
## HiC_scaffold_3_21670751 NA "1/1" "1/1"
## HiC_scaffold_3_24747014 "0/1" "0/1" "0/0"
## HiC_scaffold_3_27861792 "0/1" NA "0/0"
## HiC_scaffold_3_28057869 "1/1" "0/0" "0/0"
## HiC_scaffold_3_28441436 "0/0" "1/1" NA
## HiC_scaffold_3_28694380 "0/0" "0/0" NA
## HiC_scaffold_3_31361023 "0/1" "0/0" "0|1"
## HiC_scaffold_3_31960572 "0/1" "1|1" "1|1"
## HiC_scaffold_3_32157169 "0/0" "1/1" "0/0"
## HiC_scaffold_3_32159152 "1/1" "0/1" "0/0"
## HiC_scaffold_3_34124237 "0/0" "1/1" "1|1"
## HiC_scaffold_30_14199802 "0/1" NA "1/1"
## HiC_scaffold_30_16052331 "1/1" "1/1" "1/1"
## HiC_scaffold_30_19914075 "1/1" "1/1" "1/1"
## HiC_scaffold_30_20688783 "1/1" "0/0" NA
## HiC_scaffold_30_21446076 "0/0" "0/2" "0/0"
## HiC_scaffold_30_21598563 "1/1" "0/0" "0/0"
## HiC_scaffold_30_22155728 "0/0" "1|1" NA
## HiC_scaffold_31_687411 "0/0" "0/0" NA
## HiC_scaffold_31_3224722 "0/1" "1/1" "0/0"
## HiC_scaffold_31_3574854 "0/1" "0/0" "1/1"
## HiC_scaffold_31_5899551 "1/1" "1/1" "1|1"
## HiC_scaffold_31_5911491 "1|1" "0|0" "0/0"
## HiC_scaffold_31_6297680 NA "0/0" "0/0"
## HiC_scaffold_31_12394016 "1|1" "1/1" "1/1"
## HiC_scaffold_31_12394040 "0/0" "0/0" "0/0"
## HiC_scaffold_31_18612650 "0/0" "0/0" NA
## HiC_scaffold_32_4446859 NA "0/0" "1/1"
## HiC_scaffold_32_5274796 NA "0/1" "1/1"
## HiC_scaffold_32_5275108 "0/0" "0/1" "0/0"
## HiC_scaffold_32_5282358 "1/1" NA "0/0"
## HiC_scaffold_32_5450203 "1|1" "1|1" "1|1"
## HiC_scaffold_32_44200178 "1/1" "0/0" "1/1"
## HiC_scaffold_33_638523 "0/0" "0/0" "0/0"
## HiC_scaffold_33_44489563 "0/1" "0/1" NA
## HiC_scaffold_33_44489988 "1/1" NA NA
## HiC_scaffold_33_47080180 "0/0" "0/1" "0/0"
## HiC_scaffold_33_47495907 "0/1" "1|1" "0/0"
## HiC_scaffold_33_51865876 "1/1" "0/0" NA
## HiC_scaffold_34_1096982 "0/0" "0/0" "1/1"
## HiC_scaffold_34_6091943 "1|1" "0/0" "0|1"
## HiC_scaffold_34_6100160 "1|1" "0/0" NA
## HiC_scaffold_34_24368584 "0/0" "1/1" "0/1"
## HiC_scaffold_35_3233120 NA "0/1" NA
## HiC_scaffold_35_3253574 "0/1" "0/0" "0|1"
## HiC_scaffold_35_5512296 "0/0" "0/0" "0/0"
## HiC_scaffold_35_15114788 "1|1" "1/1" NA
## HiC_scaffold_35_21214090 "0/0" "0/1" "0/1"
## HiC_scaffold_35_21462564 "0/0" "0/0" "0/1"
## HiC_scaffold_35_22746783 "0/0" "0/0" "1/1"
## HiC_scaffold_35_22747085 "0/0" "0/1" NA
## HiC_scaffold_35_23059580 NA NA "0/0"
## HiC_scaffold_35_23158882 "1/1" "0/1" "1/1"
## HiC_scaffold_35_23261143 "1/1" "1/1" "1/1"
## HiC_scaffold_35_24403602 NA "1|1" NA
## HiC_scaffold_35_24403620 NA "1|1" NA
## HiC_scaffold_35_24993986 "0/1" "0/1" "1/1"
## HiC_scaffold_35_24993998 "0/0" "0|1" "0/0"
## HiC_scaffold_36_1538038 "0/1" "0/1" "0/0"
## HiC_scaffold_36_2464728 "0/1" "0|1" "0/1"
## HiC_scaffold_36_5489050 "0/0" "0/0" "0/1"
## HiC_scaffold_36_9673981 "0|1" "0/0" "0/0"
## HiC_scaffold_36_9674127 "1/1" "1/1" "1/1"
## HiC_scaffold_36_9674756 "1/1" "1/1" "1/1"
## HiC_scaffold_36_9676329 "0/1" "1/1" "1/1"
## HiC_scaffold_36_12304516 "0/0" NA "0/0"
## HiC_scaffold_36_12515555 "0/0" "0/0" "1|1"
## HiC_scaffold_36_13092647 "0/0" "0/0" "0/0"
## HiC_scaffold_36_13766994 "0/0" "0/0" "1/1"
## HiC_scaffold_36_14567741 "1/1" "1/1" NA
## HiC_scaffold_36_15530578 "0/1" "1|1" "1|1"
## HiC_scaffold_37_679894 NA "1/1" "1/1"
## HiC_scaffold_37_916693 "1|1" NA "0/0"
## HiC_scaffold_37_928146 "0/0" "0/1" "1/1"
## HiC_scaffold_37_1256768 "0/0" "1/1" "0/0"
## HiC_scaffold_37_1270034 "1/1" "1/1" "1/1"
## HiC_scaffold_37_1770997 "0/0" "0/0" "0/0"
## HiC_scaffold_37_1798298 "1/1" "1|1" "0/1"
## HiC_scaffold_37_2010342 "1|1" NA "1|1"
## HiC_scaffold_37_2141526 "1/1" "0/0" "0/1"
## HiC_scaffold_37_3952190 NA "0/0" "0/1"
## HiC_scaffold_37_3952215 NA "0/0" NA
## HiC_scaffold_37_9915037 "0/0" "1|1" "0/0"
## HiC_scaffold_38_5383430 "1/1" "0/1" "0/1"
## HiC_scaffold_38_5668363 "1/1" "1/1" "0/1"
## HiC_scaffold_38_5879849 "0/1" "1/1" "1/1"
## HiC_scaffold_38_5880155 "0/0" NA "0/0"
## HiC_scaffold_38_10612790 "1/1" "1/1" NA
## HiC_scaffold_38_11940240 "0|1" "2|2" "0|1"
## HiC_scaffold_38_12878826 NA "0|1" "0/0"
## HiC_scaffold_38_12959698 "0/0" "1/1" "1/1"
## HiC_scaffold_38_13087368 "1/1" "1/1" "1/1"
## HiC_scaffold_38_13480648 "1/1" "0|1" "0/0"
## HiC_scaffold_38_13965243 "1/1" "1/1" "1|1"
## HiC_scaffold_38_14089955 "0/0" "0/0" NA
## HiC_scaffold_38_14408072 NA NA NA
## HiC_scaffold_38_14931216 "0/1" "1/1" "0/0"
## HiC_scaffold_38_14978356 "0/0" NA "0|1"
## HiC_scaffold_38_14978367 "0/0" NA "0|1"
## HiC_scaffold_38_15292863 "0/0" "0/0" "0/0"
## HiC_scaffold_38_15306135 "0/1" "0/0" "1|1"
## HiC_scaffold_38_16077506 "0/0" "0/0" NA
## HiC_scaffold_38_16138965 "1/1" "1/1" NA
## HiC_scaffold_38_16226040 "0/0" "0/0" "0/0"
## HiC_scaffold_39_1393769 "0/0" "0/0" "0/0"
## HiC_scaffold_39_2014970 "0/0" "1|1" "0|1"
## HiC_scaffold_39_2014982 "0/0" "1|1" "1|1"
## HiC_scaffold_39_2014985 "0/0" "1|1" "1|1"
## HiC_scaffold_39_2426443 "0/0" "0/0" "1/1"
## HiC_scaffold_39_2485330 "1/1" "0/0" "1/1"
## HiC_scaffold_39_3350506 "1|1" "0/0" NA
## HiC_scaffold_39_5897388 "0/0" "0|1" "0/0"
## HiC_scaffold_39_17631133 "0/0" "1/1" "0/0"
## HiC_scaffold_4_12107187 NA NA "0/1"
## HiC_scaffold_4_18241670 "1|1" "1|1" NA
## HiC_scaffold_4_18241723 "1/1" "1|1" "1|1"
## HiC_scaffold_4_22418566 "1|1" "1|1" "0/0"
## HiC_scaffold_4_27899990 "0/0" "0/0" "0/0"
## HiC_scaffold_4_35575118 "0|1" "0/0" "0|1"
## HiC_scaffold_4_38000967 "1/1" "1/1" "0/1"
## HiC_scaffold_4_50654021 "0/0" "1|1" "1|1"
## HiC_scaffold_40_2243415 "1/1" "0/0" "0/0"
## HiC_scaffold_40_3000572 "0/0" "0/0" "1/1"
## HiC_scaffold_40_3014177 "1|1" NA "1|1"
## HiC_scaffold_40_3027900 "0/1" "0/0" "0/0"
## HiC_scaffold_40_3143834 "0/0" "0/0" NA
## HiC_scaffold_40_3843942 "1|1" "0/0" "0/0"
## HiC_scaffold_40_3847620 "0/0" "0/1" NA
## HiC_scaffold_40_3891007 "0/1" "0/0" "0/0"
## HiC_scaffold_40_3920667 "2/2" "1|1" "2/2"
## HiC_scaffold_40_4177963 "0/1" "0/0" "1/1"
## HiC_scaffold_40_4819107 "0/1" "1/1" "0/1"
## HiC_scaffold_40_4819834 "0|1" "0|1" NA
## HiC_scaffold_40_5788271 "0/0" "1/1" "1/1"
## HiC_scaffold_40_5965269 "0/0" "1|1" "1/1"
## HiC_scaffold_40_6204154 "0/0" "1/1" NA
## HiC_scaffold_40_8387917 "0/0" "0/1" "0/1"
## HiC_scaffold_41_3235384 "0/0" "0/0" "0/0"
## HiC_scaffold_41_3583000 NA "0/0" "0/0"
## HiC_scaffold_41_5334504 "1/1" "0/1" "1/1"
## HiC_scaffold_41_5387631 "1|1" "1|1" NA
## HiC_scaffold_41_6423426 "0/0" NA NA
## HiC_scaffold_41_14359947 "1/1" NA NA
## HiC_scaffold_41_24007593 "0/0" "0|1" "0/0"
## HiC_scaffold_41_26225447 "0/0" "0/1" "1|1"
## HiC_scaffold_41_28626484 "0/1" "0/0" "1/1"
## HiC_scaffold_41_28660620 NA "0/0" "0/0"
## HiC_scaffold_41_31007688 NA "0/0" NA
## HiC_scaffold_42_1131084 "0/0" "0/0" "0/1"
## HiC_scaffold_42_1818523 "0/1" "0/0" "0/1"
## HiC_scaffold_42_2165002 "0/0" "0/0" "0/0"
## HiC_scaffold_42_2711332 "1|1" "0/0" NA
## HiC_scaffold_42_6142699 "1/1" "0/0" "1/1"
## HiC_scaffold_42_6744976 "0/0" "1/1" "0/0"
## HiC_scaffold_42_8066919 "1|1" "0|1" NA
## HiC_scaffold_42_8068292 "1|1" "0/0" "0/0"
## HiC_scaffold_42_12487888 NA "0|1" "1|1"
## HiC_scaffold_42_41366687 "1/1" "1/1" NA
## HiC_scaffold_42_47313337 "0/0" "0/0" "0/0"
## HiC_scaffold_42_47313338 "0/0" "0/0" "0/0"
## HiC_scaffold_42_50784971 "0/0" "0/0" "0/0"
## HiC_scaffold_42_50784977 "0/0" "0/0" "0/0"
## HiC_scaffold_42_50784981 "1/1" "1/1" NA
## HiC_scaffold_42_51916989 "1/1" "1/1" NA
## HiC_scaffold_43_3842003 "1/1" "1/1" "1/1"
## HiC_scaffold_43_14140861 "1|1" "0/0" "1|1"
## HiC_scaffold_43_15053605 "1/1" "1/1" "1/1"
## HiC_scaffold_43_17289945 "0/0" "0/0" "1|1"
## HiC_scaffold_43_29967704 "0/1" "0/0" NA
## HiC_scaffold_43_35745831 "0/1" "1|1" "1|1"
## HiC_scaffold_43_37627949 "0|1" "0/1" "0/1"
## HiC_scaffold_43_37628126 NA "1/1" "0/1"
## HiC_scaffold_43_44017118 "0/0" "1/1" "0/1"
## HiC_scaffold_43_55124138 "0/1" "0/1" "0/0"
## HiC_scaffold_43_60107326 "0|1" "0|1" "0/0"
## HiC_scaffold_43_61359386 "0/1" NA "1|1"
## HiC_scaffold_43_61702593 "0|1" "0|1" "0|1"
## HiC_scaffold_43_61702606 "0|1" "0|1" "0|1"
## HiC_scaffold_43_61702721 "0/0" "0/0" "0/0"
## HiC_scaffold_43_61702738 "1/1" "1/1" NA
## HiC_scaffold_43_62511703 "1|1" "1|1" NA
## HiC_scaffold_43_64069457 "0/0" "0/0" "0/0"
## HiC_scaffold_43_64577269 "1/1" "0/0" "1/1"
## HiC_scaffold_44_1920144 "0/0" "0/0" "0/1"
## HiC_scaffold_44_2148035 "1/1" "0/0" "0/0"
## HiC_scaffold_44_2568167 "0/0" "0/1" "1/1"
## HiC_scaffold_45_4180070 "0/0" NA "1/1"
## HiC_scaffold_45_4797754 "1/1" "0/1" NA
## HiC_scaffold_45_5911123 "0|1" "1|1" "0|0"
## HiC_scaffold_45_6958990 "1/1" "1/1" "1/1"
## HiC_scaffold_45_8516216 "1|1" NA "1|1"
## HiC_scaffold_45_10191213 "1/1" "0/1" "0/0"
## HiC_scaffold_45_12005885 "1/1" "0/0" "0/0"
## HiC_scaffold_45_12006766 "1/1" NA "1/1"
## HiC_scaffold_45_24736172 "0/0" "0/0" "1/1"
## HiC_scaffold_45_24739830 NA "0/0" "0/0"
## HiC_scaffold_46_9691567 "0/0" "0|1" "1|1"
## HiC_scaffold_46_17380257 "0/0" "0/0" "0/0"
## HiC_scaffold_46_18387147 "0/0" "0/0" "0|1"
## HiC_scaffold_46_37092355 "0/1" "0/0" "0/0"
## HiC_scaffold_46_39183624 NA "0/0" "0/0"
## HiC_scaffold_46_39390547 "1/1" NA "1/1"
## HiC_scaffold_46_42964941 "0/0" "0/0" "0/0"
## HiC_scaffold_46_42986653 "1/1" "0/0" "0/1"
## HiC_scaffold_46_52074364 "1|1" "1|1" "1|1"
## HiC_scaffold_46_54255667 "1/1" "1/1" NA
## HiC_scaffold_47_3750532 "0/0" "0/0" "0/0"
## HiC_scaffold_47_3751345 "1/1" "1/1" "1/1"
## HiC_scaffold_47_15400639 "1|1" "1|1" "1|1"
## HiC_scaffold_47_24072414 "1/1" "1/1" "0/0"
## HiC_scaffold_47_25273825 NA "0|1" "1|1"
## HiC_scaffold_48_8752752 "0/0" "1/2" "0/1"
## HiC_scaffold_48_10765920 "0/0" "0/0" "0/0"
## HiC_scaffold_48_16077918 "0/0" "1|1" "0/0"
## HiC_scaffold_48_16077940 "0/0" "1|1" "1/1"
## HiC_scaffold_48_16411609 "0/0" "0/0" "1/1"
## HiC_scaffold_48_19972580 NA "0/1" NA
## HiC_scaffold_48_23493079 "1|1" "0/0" "0/0"
## HiC_scaffold_48_23597210 "0/1" NA "0/0"
## HiC_scaffold_48_24478493 "0/0" "0/0" "1/1"
## HiC_scaffold_48_24881148 "1/1" NA NA
## HiC_scaffold_48_25865723 "1/1" "1/1" "1/1"
## HiC_scaffold_48_25984068 "0|1" "1|1" NA
## HiC_scaffold_48_25989079 "1/1" "0/1" NA
## HiC_scaffold_48_30601375 "1|1" NA NA
## HiC_scaffold_48_31662115 "1/1" "0/0" "1/1"
## HiC_scaffold_48_41971562 "0/0" "1/1" "1/1"
## HiC_scaffold_49_3392801 "1|1" "0/1" "0/0"
## HiC_scaffold_49_6101692 "1/1" "1/1" "1/1"
## HiC_scaffold_49_7996315 "0/0" "0/0" NA
## HiC_scaffold_49_9470474 "0/1" "0/1" "1/1"
## HiC_scaffold_49_9886007 NA "1|1" NA
## HiC_scaffold_49_12592113 "0/0" NA "1/1"
## HiC_scaffold_49_12741575 NA "1/1" NA
## HiC_scaffold_49_15135019 "1/1" NA "1/1"
## HiC_scaffold_49_25906219 NA "0/0" "0/0"
## HiC_scaffold_49_26614199 "0/1" "0/0" "1/1"
## HiC_scaffold_49_26655554 "0/1" "0/0" NA
## HiC_scaffold_49_37568341 "1|1" NA "0/0"
## HiC_scaffold_49_37568353 "1|1" NA "0/0"
## HiC_scaffold_49_40002255 NA "0/1" "1|1"
## HiC_scaffold_49_40003229 "0/1" "0|1" "0/0"
## HiC_scaffold_49_42966376 "0/0" "0/1" "1/1"
## HiC_scaffold_5_801252 "0/0" "0/0" NA
## HiC_scaffold_5_1446603 "0|1" "1|1" "0|1"
## HiC_scaffold_5_1446611 "0|1" "1|1" "0|1"
## HiC_scaffold_5_1530759 "0/0" "1/1" "0/0"
## HiC_scaffold_5_1539275 "0/0" "0/0" "0/0"
## HiC_scaffold_5_1789576 "0/0" "0/0" "0|1"
## HiC_scaffold_5_1808197 "0/1" "1/1" "1/1"
## HiC_scaffold_5_1808204 "0/1" "0/0" "0/0"
## HiC_scaffold_5_1943895 NA "1|1" "0/0"
## HiC_scaffold_5_1944469 "0/0" "1/1" NA
## HiC_scaffold_5_2857283 "0/0" "1/1" NA
## HiC_scaffold_5_4061378 "0/1" "0/0" "1|1"
## HiC_scaffold_5_4340647 "1|1" "0/0" "0/0"
## HiC_scaffold_5_4435246 "1/1" "0/0" NA
## HiC_scaffold_5_8868783 "1/1" "0/0" "1/1"
## HiC_scaffold_50_4315969 "0/1" "0/1" NA
## HiC_scaffold_50_11652296 "1/1" "1|1" "1/1"
## HiC_scaffold_50_11657309 "1/1" "0/1" "1/1"
## HiC_scaffold_50_15521027 "0/0" "0/1" "0/0"
## HiC_scaffold_50_21050962 "0/1" "1/1" NA
## HiC_scaffold_50_23686202 "0|1" "0|1" "1/1"
## HiC_scaffold_50_27393462 "0/0" "0/0" NA
## HiC_scaffold_50_42586883 "1|1" "0/1" NA
## HiC_scaffold_50_45087211 "1/1" "0/0" "0/0"
## HiC_scaffold_50_49796550 "1/1" NA "1/1"
## HiC_scaffold_50_54383367 "0/0" "0/0" "1/1"
## HiC_scaffold_50_63318678 "1/1" "1/1" "1/1"
## HiC_scaffold_51_3521000 "0/0" "0/1" "0/1"
## HiC_scaffold_51_4681905 NA "0/1" "1/1"
## HiC_scaffold_51_6305599 "0/1" "1|1" "2|2"
## HiC_scaffold_51_8530818 "0/0" "0/0" "1|1"
## HiC_scaffold_51_11653312 "0/0" "0/1" "0/1"
## HiC_scaffold_51_13138547 "1/1" "1/1" "1|1"
## HiC_scaffold_51_14457091 "0/0" "0/0" "1|1"
## HiC_scaffold_51_15512668 "0/1" "1/1" "0/0"
## HiC_scaffold_51_17816346 "1/1" "1/1" "1/1"
## HiC_scaffold_51_19997934 "1|1" "0/0" "1|1"
## HiC_scaffold_51_19997936 "1|1" "0/0" "1|1"
## HiC_scaffold_51_20870773 NA "1/1" "0/0"
## HiC_scaffold_51_26660104 "0|1" "1|1" "0/0"
## HiC_scaffold_51_40727521 "0/0" "1|1" "0/0"
## HiC_scaffold_51_40892841 "0/1" "0/0" "0/1"
## HiC_scaffold_51_41717519 "0/1" "1/1" "0/1"
## HiC_scaffold_51_42547638 "1/1" "1/1" NA
## HiC_scaffold_52_3335804 "1/1" "1/1" "0/0"
## HiC_scaffold_52_4149130 "1/1" NA "0/0"
## HiC_scaffold_52_6893679 "1|1" "1/1" "1|1"
## HiC_scaffold_52_13155416 "0/1" "1/1" NA
## HiC_scaffold_52_13155437 "0|1" "1|1" NA
## HiC_scaffold_52_13155442 "0|1" "1|1" NA
## HiC_scaffold_52_14885688 "1/1" "1/1" "0/0"
## HiC_scaffold_52_14895078 "0/0" "1/1" "1/1"
## HiC_scaffold_52_15141791 "0/0" "0/1" "0/0"
## HiC_scaffold_52_15743051 "1|1" "0/0" "1|1"
## HiC_scaffold_52_15760201 "1/1" "0/1" "1/1"
## HiC_scaffold_52_15834589 "1|1" NA NA
## HiC_scaffold_52_15841769 "0/0" "1/1" NA
## HiC_scaffold_52_15862421 "1|1" "0/0" NA
## HiC_scaffold_52_15970970 "0/0" "0/2" "0/1"
## HiC_scaffold_52_16275237 "1/1" "1/1" "0/0"
## HiC_scaffold_52_16275240 "0/0" "0/0" "1|1"
## HiC_scaffold_52_16275290 "0/0" "0/0" "1|1"
## HiC_scaffold_52_16524164 "0|1" "1|1" "0/1"
## HiC_scaffold_52_16524572 "1/1" "1/1" "0/1"
## HiC_scaffold_52_16525647 "0/1" "0/1" "0/0"
## HiC_scaffold_52_16637047 "0/1" "1/1" "1/1"
## HiC_scaffold_52_17202127 "1|1" "0/0" "0/0"
## HiC_scaffold_52_17207724 "1/1" "1/1" "0/1"
## HiC_scaffold_52_17508820 "0/0" "1|1" "1|1"
## HiC_scaffold_52_17547593 "1/1" "0/0" NA
## HiC_scaffold_52_17551239 "1/1" "0/0" "0/0"
## HiC_scaffold_52_17560696 "0|1" "0|1" NA
## HiC_scaffold_52_17560699 "0|1" "0|1" NA
## HiC_scaffold_52_17741250 "0/0" "0/0" "0/0"
## HiC_scaffold_52_17742260 "1|1" "1|1" "1|1"
## HiC_scaffold_52_18340578 "1/1" "0/0" NA
## HiC_scaffold_52_18415911 "0/0" "0/0" "0/0"
## HiC_scaffold_52_22189517 "1/1" "0/0" "0/0"
## HiC_scaffold_52_22526592 "0/1" "0/1" NA
## HiC_scaffold_52_26393471 "0/0" "0/0" "0/0"
## HiC_scaffold_52_26799380 "1/1" "0/1" "1/1"
## HiC_scaffold_52_31871931 "0/0" "0/0" "0/0"
## HiC_scaffold_52_31874283 "0|1" "1|1" "1|1"
## HiC_scaffold_52_31874287 "0|1" "1|1" "1|1"
## HiC_scaffold_52_32161053 "1|1" "1|1" "1|1"
## HiC_scaffold_52_33165557 "0/1" "0/1" NA
## HiC_scaffold_52_33897620 "1/1" "0/0" "0/0"
## HiC_scaffold_52_34763156 "0|1" "0/0" "1|1"
## HiC_scaffold_52_34763171 "0/1" "0/0" NA
## HiC_scaffold_52_35174755 "0/0" "0/0" "0/0"
## HiC_scaffold_52_35608453 "1/1" "0/0" "0/1"
## HiC_scaffold_52_35608470 "1|1" "0/0" "1|1"
## HiC_scaffold_52_39464728 "1|1" "0|1" "0/0"
## HiC_scaffold_52_42141354 "0/0" "0/0" "1|1"
## HiC_scaffold_52_44675725 "1/1" "1/1" "0|1"
## HiC_scaffold_52_49935920 "0/0" "0/0" "1/1"
## HiC_scaffold_53_21789524 "0/0" "0/0" "1/1"
## HiC_scaffold_53_25168042 "0|1" "1/1" "0/0"
## HiC_scaffold_53_26398989 "0/0" NA "0/0"
## HiC_scaffold_53_26398992 "0/0" NA "0/0"
## HiC_scaffold_53_26398994 "0/0" NA "0/0"
## HiC_scaffold_53_26549665 "0/0" "0/0" NA
## HiC_scaffold_53_29227676 "1|1" "0/0" "0|1"
## HiC_scaffold_53_31250349 "1/1" NA "1/1"
## HiC_scaffold_54_530581 NA "1|1" "0/0"
## HiC_scaffold_54_794095 "0/0" NA "1|1"
## HiC_scaffold_54_1171109 "0|1" "1|1" "1|1"
## HiC_scaffold_54_1378956 "1/1" "0|1" "1/1"
## HiC_scaffold_54_1380539 NA "0/1" "1/1"
## HiC_scaffold_54_3045015 "0/1" "1/1" "0/0"
## HiC_scaffold_54_3185987 "0/0" "0/0" "0/0"
## HiC_scaffold_54_4401098 "0/0" "0/0" "0/0"
## HiC_scaffold_54_5595903 "0/1" "0/0" NA
## HiC_scaffold_54_5595921 "0/1" NA NA
## HiC_scaffold_54_5595928 "0/0" "0/0" NA
## HiC_scaffold_54_5595949 "1/1" "0/0" "0/0"
## HiC_scaffold_54_6649662 "0/1" "1/1" "1/1"
## HiC_scaffold_54_8036734 "0|1" "0/0" "0|1"
## HiC_scaffold_54_9206614 "0/1" "0/0" NA
## HiC_scaffold_54_35913192 "0/1" "0/0" "0/0"
## HiC_scaffold_54_35913282 "0|1" "0/1" "0|1"
## HiC_scaffold_54_35913283 "1/1" "0|1" "0|1"
## HiC_scaffold_55_1260491 "0/1" NA "1/1"
## HiC_scaffold_55_3254027 "1/1" "0/1" "0/0"
## HiC_scaffold_55_3281985 "1|1" "1|1" NA
## HiC_scaffold_55_5409544 NA "0/0" "0/0"
## HiC_scaffold_55_5411094 "1|1" "1|1" NA
## HiC_scaffold_55_5411115 "1/1" "1/1" "0/0"
## HiC_scaffold_55_18121799 "0/1" "1/1" "0/1"
## HiC_scaffold_55_19605809 "0/0" "0|1" NA
## HiC_scaffold_55_19605817 "1|1" "0|1" "0/0"
## HiC_scaffold_55_19605821 "1|1" "1/1" "1/1"
## HiC_scaffold_55_20195204 "0/0" "0/0" "0/1"
## HiC_scaffold_55_20886967 "0/0" "0/1" NA
## HiC_scaffold_55_23222937 "0/1" "1/1" "1/1"
## HiC_scaffold_55_23626331 "0/0" "1/1" "0/0"
## HiC_scaffold_55_24539590 "1/1" "1/1" "1/1"
## HiC_scaffold_55_24585939 "0/0" "0/0" "1/1"
## HiC_scaffold_55_34174151 "0/0" "0/0" "1/1"
## HiC_scaffold_56_17874332 "0/0" NA "0/1"
## HiC_scaffold_56_18635259 "1|1" "0/0" "0/0"
## HiC_scaffold_56_23654344 NA "0/1" "0/0"
## HiC_scaffold_56_35850533 "0/1" "0/0" "0/0"
## HiC_scaffold_56_35850539 "0/0" "0/1" "1/1"
## HiC_scaffold_56_40813556 "0/0" "1/1" NA
## HiC_scaffold_56_53211633 "0/1" NA "0/0"
## HiC_scaffold_56_60070829 "1/1" "1/1" "1/1"
## HiC_scaffold_56_73286017 "1|1" NA "0/0"
## HiC_scaffold_56_73829442 "0/0" "0/0" "0/0"
## HiC_scaffold_56_73829443 "0/0" "0/0" "0/0"
## HiC_scaffold_56_76060304 "1|1" "0/0" "0/0"
## HiC_scaffold_57_25306408 NA "0/0" "1/1"
## HiC_scaffold_57_29222385 "0/0" "0|1" "0/0"
## HiC_scaffold_57_29592432 NA "0/0" "0/0"
## HiC_scaffold_57_31472698 "0/0" NA "0/0"
## HiC_scaffold_57_32371742 "1/1" "1/1" "0/0"
## HiC_scaffold_57_36495072 "0/0" "0/0" "0/0"
## HiC_scaffold_57_37286264 "1/1" "0/0" NA
## HiC_scaffold_57_38537415 "0/0" NA "0/1"
## HiC_scaffold_57_45438854 "1|1" "1|1" "2|2"
## HiC_scaffold_57_52856874 "0/0" "0/0" "0/0"
## HiC_scaffold_57_53575355 "1/1" "0/0" "1/1"
## HiC_scaffold_57_55856783 "0/0" "0/1" "0/0"
## HiC_scaffold_58_1362614 "0/1" "0/0" "1/1"
## HiC_scaffold_58_1432845 "1/1" "1|1" "1/1"
## HiC_scaffold_58_1541720 "0/0" "0/0" "0/0"
## HiC_scaffold_58_2777120 "1/1" "0/0" "0/0"
## HiC_scaffold_58_2973169 NA NA "1/1"
## HiC_scaffold_58_3243043 "1/1" "1/1" "0/0"
## HiC_scaffold_58_4035282 "0/0" "1/1" "0/1"
## HiC_scaffold_58_5442157 "0/0" "0/0" "0/1"
## HiC_scaffold_58_8004631 "0/0" "1/1" "0/1"
## HiC_scaffold_58_8058998 "1/1" "0/0" "0/0"
## HiC_scaffold_58_8932837 "1/1" "0/1" "0/0"
## HiC_scaffold_58_14814944 "1/1" "0/0" NA
## HiC_scaffold_58_15639988 "0/0" "1/1" "0/0"
## HiC_scaffold_58_15707198 NA "0/0" "1/1"
## HiC_scaffold_58_15707258 "1/1" "0/0" "1/1"
## HiC_scaffold_58_15710623 "1/1" "0/1" "0/0"
## HiC_scaffold_58_19155063 "0/0" NA NA
## HiC_scaffold_58_20224050 "0/0" "0/0" "1/1"
## HiC_scaffold_58_38475355 NA "1/1" "1/1"
## HiC_scaffold_59_3979055 "1/1" "0/1" "0/1"
## HiC_scaffold_59_5071810 "0/0" "0/0" "0/0"
## HiC_scaffold_59_5349936 "1/1" "1/1" NA
## HiC_scaffold_59_5350114 "0/1" NA "0/1"
## HiC_scaffold_59_7738302 "0/0" "0/0" "0/0"
## HiC_scaffold_59_7738351 "0/0" "0/0" "0/0"
## HiC_scaffold_59_7958561 NA "0/0" "0/0"
## HiC_scaffold_59_9273798 "0/0" "0/1" "0/0"
## HiC_scaffold_59_50928099 "0/0" "1/1" "0/0"
## HiC_scaffold_59_52960060 "0/0" "0/0" "0/0"
## HiC_scaffold_6_10569023 NA "0/0" "0/0"
## HiC_scaffold_6_10711445 "0/0" "0/0" "1/1"
## HiC_scaffold_6_13209200 "1|1" "1|1" "0/0"
## HiC_scaffold_6_13213107 "1/1" "0/0" "0/0"
## HiC_scaffold_6_13311684 "0/0" "0/0" "0/0"
## HiC_scaffold_6_15670783 "0/0" NA "1|1"
## HiC_scaffold_6_19111232 "0/0" "0/0" "0/0"
## HiC_scaffold_6_32805498 "1/1" "0/0" "1/1"
## HiC_scaffold_6_38793174 "0/0" "1|1" "0/0"
## HiC_scaffold_6_41092101 "0/0" "0/0" "1|1"
## HiC_scaffold_6_41342933 "1/1" NA "0/1"
## HiC_scaffold_6_47594508 "1/1" "0/0" "0/0"
## HiC_scaffold_60_70878 "1|1" "1|1" "0/0"
## HiC_scaffold_60_99549 "0/0" NA NA
## HiC_scaffold_60_201823 "1/1" "1/1" "1/1"
## HiC_scaffold_60_712969 NA "1|1" "1|1"
## HiC_scaffold_60_744783 NA "1/1" NA
## HiC_scaffold_60_744788 NA "1/1" "0/0"
## HiC_scaffold_60_22142128 NA "1/1" "1|1"
## HiC_scaffold_60_27599770 NA "1/1" "1/1"
## HiC_scaffold_60_30608878 "1|1" "1|1" "1|1"
## HiC_scaffold_60_32657324 "0/1" "0/0" "1/1"
## HiC_scaffold_60_32672580 "1/1" "1/1" "1/1"
## HiC_scaffold_60_38856893 "0/0" "1/1" "1/1"
## HiC_scaffold_60_39028335 "1/1" "0/0" NA
## HiC_scaffold_60_40296869 "0/0" "0/1" NA
## HiC_scaffold_60_42775723 "0/0" "0/1" "1/1"
## HiC_scaffold_60_44687906 "0/1" "1/1" NA
## HiC_scaffold_60_44804601 NA "0/0" "0/0"
## HiC_scaffold_60_53696867 "0|1" "1|1" "0/0"
## HiC_scaffold_60_53696868 "0|1" "1|1" "0/0"
## HiC_scaffold_60_60651515 "0|1" "0/0" "0/0"
## HiC_scaffold_60_70678462 "1/1" "1/1" "1/1"
## HiC_scaffold_61_2205328 "0/0" "0/0" "0/1"
## HiC_scaffold_61_2491706 "1/1" "1|1" "1|1"
## HiC_scaffold_61_4009916 "0/0" NA "0/0"
## HiC_scaffold_61_4062917 "0/0" "0/0" "2/2"
## HiC_scaffold_61_4122763 "1|1" "1|1" "0/0"
## HiC_scaffold_61_4216461 "1/1" "0/0" "1/1"
## HiC_scaffold_61_4325053 "1/1" "0/1" "0/0"
## HiC_scaffold_61_9004838 "1|1" "1|1" NA
## HiC_scaffold_61_14635083 "0/0" "1|1" "1/1"
## HiC_scaffold_62_1128608 "1/1" "1/1" "1/1"
## HiC_scaffold_62_11335200 "0/0" "0|0" "0|1"
## HiC_scaffold_62_18828476 "1/1" "1/1" "1/1"
## HiC_scaffold_62_21548870 "1|1" "1|1" "1|1"
## HiC_scaffold_62_23103274 "0/1" "0/0" "0/0"
## HiC_scaffold_62_25793456 "1/1" "0/0" "1/1"
## HiC_scaffold_62_25887474 "0/1" NA "0/0"
## HiC_scaffold_62_28516096 "0|1" "1|1" "0/0"
## HiC_scaffold_62_28516099 "0|1" "1|1" "0/0"
## HiC_scaffold_62_28818725 "1|1" NA "0|1"
## HiC_scaffold_62_28818729 "0/0" NA "0/0"
## HiC_scaffold_62_45207353 "0/1" "0/0" "0/0"
## HiC_scaffold_63_3092269 "1/1" "1/1" NA
## HiC_scaffold_63_3977940 "0/0" "0/0" NA
## HiC_scaffold_63_4084937 "1/1" NA "0/1"
## HiC_scaffold_63_4196326 "1|1" NA "0|1"
## HiC_scaffold_63_6262453 "0/1" "0/1" "0/0"
## HiC_scaffold_63_6350204 "1/1" "0/1" "1/1"
## HiC_scaffold_63_6458794 "0|1" "0/1" "0|1"
## HiC_scaffold_64_9162978 "0/0" "0/0" "0/0"
## HiC_scaffold_64_16876561 "0/0" NA "0/0"
## HiC_scaffold_64_17543009 "1/1" "0/0" "0/0"
## HiC_scaffold_64_18925356 "1/1" "0/0" NA
## HiC_scaffold_64_19133050 "1|1" "0/0" NA
## HiC_scaffold_64_19627769 "1|1" NA "1|1"
## HiC_scaffold_64_20477250 "0/1" "0/0" "1/1"
## HiC_scaffold_64_22816677 "1/1" "0/0" "0/0"
## HiC_scaffold_64_22954654 "1|1" NA NA
## HiC_scaffold_64_22954658 "1|1" NA NA
## HiC_scaffold_64_22954682 "1/1" NA NA
## HiC_scaffold_65_6829971 "1/1" "0/0" NA
## HiC_scaffold_65_8071102 "1/1" "0/0" "0/0"
## HiC_scaffold_65_9023979 "0/0" "1/1" "0/0"
## HiC_scaffold_65_9839671 "0/0" "0/0" NA
## HiC_scaffold_65_10404778 "0/0" "0/0" NA
## HiC_scaffold_65_11327791 "1/1" "1/1" "1/1"
## HiC_scaffold_65_11332104 "1/1" "0/0" NA
## HiC_scaffold_65_34823822 "1|1" NA NA
## HiC_scaffold_65_51418017 "1/1" "0/1" "1|1"
## HiC_scaffold_65_54053979 "1|1" NA "1|1"
## HiC_scaffold_65_57110875 "0/0" "1|1" NA
## HiC_scaffold_66_15615363 "1|1" "0/0" "1/1"
## HiC_scaffold_66_15672090 "0/1" "0/0" "0/0"
## HiC_scaffold_66_17903445 "1|1" NA "0/0"
## HiC_scaffold_66_18298629 "1|1" NA "0/0"
## HiC_scaffold_66_19730676 "1|1" "0/0" "1|1"
## HiC_scaffold_66_23688768 "0/0" "0/0" "1/1"
## HiC_scaffold_66_26614535 NA "0/0" "0/0"
## HiC_scaffold_66_27445665 "1/1" "1/1" "1/1"
## HiC_scaffold_66_29457165 "1|1" "1|1" "1|1"
## HiC_scaffold_66_29457180 "1|1" "1|1" "1/1"
## HiC_scaffold_66_30116287 "1/1" "1|1" "1/1"
## HiC_scaffold_66_31603503 NA "0/0" "0/0"
## HiC_scaffold_66_33261460 "0|1" "1/1" "0/0"
## HiC_scaffold_66_34138981 "1/1" "0/0" "1/1"
## HiC_scaffold_66_34139020 "0/1" NA "0|1"
## HiC_scaffold_66_34142862 "0/0" "0/0" "1/1"
## HiC_scaffold_67_1404390 "1/1" "0/0" "1/1"
## HiC_scaffold_67_28493665 "0/0" NA "0/0"
## HiC_scaffold_67_30243885 "0/0" NA "0/1"
## HiC_scaffold_67_31511806 "0/0" "0/0" NA
## HiC_scaffold_67_34638092 "0/0" "1/1" "0/1"
## HiC_scaffold_67_37534720 "0/1" "0/1" "1/1"
## HiC_scaffold_67_39679546 "0/1" NA "0/0"
## HiC_scaffold_67_39854918 "0/1" "0/1" "1|1"
## HiC_scaffold_67_39860738 "0/0" "0/1" "1/1"
## HiC_scaffold_67_40331656 "0/0" "0/0" NA
## HiC_scaffold_67_40824747 "1|1" "1|1" "1|1"
## HiC_scaffold_68_3438132 "1|1" "1|1" "1|1"
## HiC_scaffold_68_3438133 "1|1" "1|1" "1|1"
## HiC_scaffold_68_11206902 "0/0" "0/0" NA
## HiC_scaffold_68_32770607 "1|1" "1|1" NA
## HiC_scaffold_68_34016823 "0/0" "0/0" "0/0"
## HiC_scaffold_68_34020019 "1/1" "1/1" "0/0"
## HiC_scaffold_68_40296057 "0|1" "0/0" "1|1"
## HiC_scaffold_68_40296059 "0|1" "0/0" "1|1"
## HiC_scaffold_68_65001879 "0/0" "1/1" "0/0"
## HiC_scaffold_69_23311147 "1/1" "0/0" NA
## HiC_scaffold_69_27351303 "0/0" "0/0" "1/1"
## HiC_scaffold_69_29437208 "1/1" "0|1" "0/0"
## HiC_scaffold_69_33699381 "1|1" "1|1" "1|1"
## HiC_scaffold_69_40194698 "0/0" "1/1" "1/1"
## HiC_scaffold_69_48273575 "1/1" "1/1" NA
## HiC_scaffold_69_48348026 "0/0" "0/0" "0/1"
## HiC_scaffold_69_48348034 "0/0" "0|1" "0/0"
## HiC_scaffold_69_49563252 "1/1" "1/1" "0/0"
## HiC_scaffold_69_49593952 "1/1" "0/0" "1/1"
## HiC_scaffold_69_49859037 "1|1" "1|1" "0|1"
## HiC_scaffold_69_51271238 "0/0" "0/0" "1/1"
## HiC_scaffold_69_51529836 "1/1" "0/0" "0/0"
## HiC_scaffold_69_57313650 "1/1" "0/1" "1/1"
## HiC_scaffold_69_57359194 "0/1" "0/0" "0/0"
## HiC_scaffold_6951_523650 "1/1" NA "1/1"
## HiC_scaffold_6951_897126 "0|1" "0/0" "0/0"
## HiC_scaffold_6951_1134482 NA "0/0" "1|1"
## HiC_scaffold_6951_2484960 "0/0" "0/0" "1/1"
## HiC_scaffold_6951_3301273 "0/0" "1|1" "1/1"
## HiC_scaffold_6951_3314609 "1/1" NA "1/1"
## HiC_scaffold_6951_3945993 "0/0" "1|1" "0/0"
## HiC_scaffold_6958_218293 "0/2" "0/0" "0|1"
## HiC_scaffold_6958_449143 "1/1" "0/1" "0/0"
## HiC_scaffold_7_351023 "1/1" "0/0" NA
## HiC_scaffold_7_488024 "0/0" "0/0" "1|1"
## HiC_scaffold_7_492663 "0/1" "0/1" "0/0"
## HiC_scaffold_7_693567 "0/0" "0/0" "0/0"
## HiC_scaffold_7_2379128 "0/0" "0/0" "1/1"
## HiC_scaffold_7_3087721 "1/1" "0/1" "1|1"
## HiC_scaffold_7_3394880 "0/1" "1/1" "1/1"
## HiC_scaffold_7_22247106 "0/0" "0/1" "0/0"
## HiC_scaffold_70_4632611 "0/0" "1|1" "1|1"
## HiC_scaffold_70_14042778 "1/1" NA "0/0"
## HiC_scaffold_71_410844 "0/0" "0|1" "0/0"
## HiC_scaffold_71_1753451 "1/1" "1/1" "0/0"
## HiC_scaffold_71_2283682 "0/0" "1|1" "1|1"
## HiC_scaffold_71_3439685 "0|2" NA "0/1"
## HiC_scaffold_71_17850462 "1/1" "1|1" "0/1"
## HiC_scaffold_71_20588314 "0/0" "1/1" "0/1"
## HiC_scaffold_71_25465351 "1|1" "0|1" NA
## HiC_scaffold_71_25465352 "1|1" "0|1" NA
## HiC_scaffold_71_26356062 "0/0" "0/1" "0/0"
## HiC_scaffold_72_11785096 "0/1" "0/1" "1/1"
## HiC_scaffold_72_17285854 "1/1" "1/1" "1/1"
## HiC_scaffold_72_23704999 NA NA "0/1"
## HiC_scaffold_72_24465318 "0|1" "0/0" "0|1"
## HiC_scaffold_72_30457277 NA "1/1" "0/0"
## HiC_scaffold_72_32068649 NA "0/0" "0|1"
## HiC_scaffold_72_35058295 "0/1" "0/0" "0/0"
## HiC_scaffold_72_36024997 "0|1" "0/0" "1|1"
## HiC_scaffold_72_37135067 "0|1" NA "1|1"
## HiC_scaffold_72_38410141 "1/1" "1/1" "1/1"
## HiC_scaffold_72_38448056 "0/0" "0/0" "0/0"
## HiC_scaffold_72_41412511 NA "0/1" "0/0"
## HiC_scaffold_73_2192629 "1|1" "0/0" NA
## HiC_scaffold_73_2920208 "0|1" "0/0" "0|1"
## HiC_scaffold_73_4522493 NA "1/1" "1/1"
## HiC_scaffold_73_4748625 "1/1" "0/1" "0/0"
## HiC_scaffold_73_5839336 "1/1" "1/1" "1/1"
## HiC_scaffold_73_9338582 "1/1" "0/0" "1/1"
## HiC_scaffold_73_27393859 "0|1" "0/0" "0/1"
## HiC_scaffold_74_14235619 "0/0" "1/1" NA
## HiC_scaffold_74_14515598 "1/1" "1/1" "1/1"
## HiC_scaffold_74_15116121 "0|1" "0/0" "1|1"
## HiC_scaffold_74_17233613 "1/1" "1/1" "1/1"
## HiC_scaffold_74_17725340 "1|1" "1|1" "1|1"
## HiC_scaffold_74_18418135 "1|1" "0/0" "0/0"
## HiC_scaffold_74_18418138 "1|1" "0/0" "0/0"
## HiC_scaffold_74_21254425 "1/1" NA "0/1"
## HiC_scaffold_74_22261065 "0/0" "0/0" NA
## HiC_scaffold_74_47132519 "1|1" "0/0" "0/0"
## HiC_scaffold_74_50979096 "0/0" "0/1" "0/1"
## HiC_scaffold_74_51060549 "1/1" "1/1" "1/1"
## HiC_scaffold_74_53256803 "1/1" "1/1" NA
## HiC_scaffold_74_55464169 "0/1" "0/0" "1/1"
## HiC_scaffold_74_55515512 "1/1" "0/0" "1/1"
## HiC_scaffold_74_55999260 "1|1" "0/0" "1|1"
## HiC_scaffold_74_57404902 "0/1" "0/1" "0/0"
## HiC_scaffold_74_58181927 "1|1" "1|1" "0/0"
## HiC_scaffold_74_58198600 "1/1" "0/0" "1/1"
## HiC_scaffold_74_63060195 "1/1" "0/1" "1/1"
## HiC_scaffold_75_5345466 NA "0/1" "0/0"
## HiC_scaffold_75_5346522 "0/0" "1/1" NA
## HiC_scaffold_75_5346535 "0/0" "1/1" NA
## HiC_scaffold_75_9850973 "0/0" "0/0" "0/1"
## HiC_scaffold_76_27149820 "0/0" "0/0" "1/1"
## HiC_scaffold_76_31582908 "0/0" "0/0" "0/0"
## HiC_scaffold_76_31792815 "0/0" "0/0" "0/1"
## HiC_scaffold_76_35352820 NA "1|1" "0|1"
## HiC_scaffold_76_57782171 "1/1" "0/0" "0/0"
## HiC_scaffold_76_59862401 "1|1" "0/0" "0/0"
## HiC_scaffold_76_61095594 "0/1" "0/0" NA
## HiC_scaffold_76_65496128 "1/1" "0/1" NA
## HiC_scaffold_76_68965847 "1/1" "0/1" "0/0"
## HiC_scaffold_76_68966411 "1/1" "0/0" "0/0"
## HiC_scaffold_76_69823482 "0/0" "1|1" "0/0"
## HiC_scaffold_76_73343841 "1/1" "1/1" "1/1"
## HiC_scaffold_77_3598274 "1|1" NA "0/0"
## HiC_scaffold_77_6982137 "0/0" "0/0" "0/0"
## HiC_scaffold_77_11021994 "1/1" "0/0" "0/1"
## HiC_scaffold_77_13608165 NA "0/0" NA
## HiC_scaffold_77_16888594 "0/1" "0/0" "0/0"
## HiC_scaffold_77_16888623 "0/0" "0/0" NA
## HiC_scaffold_77_16889448 "1/1" "0/1" "0/1"
## HiC_scaffold_77_39784685 "1|1" "1|1" "0/0"
## HiC_scaffold_77_44375866 "0/0" "0/0" NA
## HiC_scaffold_77_45385370 "0/0" "0/0" "1/1"
## HiC_scaffold_78_5719919 "1/1" "1/1" "1/1"
## HiC_scaffold_78_11353297 "0/0" "0/0" "0/0"
## HiC_scaffold_78_27316392 "0/1" "0/0" "0/0"
## HiC_scaffold_78_48124809 "2/2" "1/1" "0/0"
## HiC_scaffold_78_48124826 "1/1" "1/1" "0/0"
## HiC_scaffold_78_48126176 "1/1" "1/1" "0/0"
## HiC_scaffold_78_48279096 "1/1" "0/1" "0/0"
## HiC_scaffold_78_48434558 "0/0" "1|1" NA
## HiC_scaffold_78_49759181 "0/0" "0/0" "0|1"
## HiC_scaffold_78_49759192 "0/0" "0/0" "0/1"
## HiC_scaffold_78_49759215 "1/1" "1/1" "1/1"
## HiC_scaffold_78_51364025 "1/1" NA "1/1"
## HiC_scaffold_78_55395445 "1/1" "1/1" "0/1"
## HiC_scaffold_78_59610866 "0/1" "0/0" "0/0"
## HiC_scaffold_78_62136661 "1/1" "1/1" "1/1"
## HiC_scaffold_79_1643780 "0|1" "0/0" NA
## HiC_scaffold_79_2519178 "0/0" "1/1" "1/1"
## HiC_scaffold_79_2858100 "0/0" "0/0" "0/0"
## HiC_scaffold_79_3922454 "0/0" "0/0" "1/1"
## HiC_scaffold_79_4127878 "1|1" "1|1" "1|1"
## HiC_scaffold_79_4543693 "0/0" "0/0" NA
## HiC_scaffold_79_11507678 "0/1" "0/1" "0/0"
## HiC_scaffold_79_12618812 "0/0" NA "1/1"
## HiC_scaffold_79_14185404 "1|1" "0/1" "1|1"
## HiC_scaffold_79_17120237 "0/0" "0/1" "0/1"
## HiC_scaffold_79_17120254 "0/1" "0/1" "0/1"
## HiC_scaffold_79_35551507 "1|1" "0/0" "0/0"
## HiC_scaffold_79_35551543 "1/1" "0/0" "0/0"
## HiC_scaffold_79_38927423 "1|1" "1|1" "1|1"
## HiC_scaffold_79_42623307 "0|1" NA "1|1"
## HiC_scaffold_79_43179786 "1/1" "0/0" "1/1"
## HiC_scaffold_79_43180099 "0/0" "0/0" "0/0"
## HiC_scaffold_79_43828078 "0/0" "1|1" "1|1"
## HiC_scaffold_79_43872513 "0/1" "1/1" "0/0"
## HiC_scaffold_79_44627215 "0/1" "1/1" "1/1"
## HiC_scaffold_79_50772769 "0/0" "1|1" "0/0"
## HiC_scaffold_79_55468575 "0/1" NA NA
## HiC_scaffold_79_55816114 "1/1" NA NA
## HiC_scaffold_79_59915784 "1|1" "0/0" "0/1"
## HiC_scaffold_79_60165298 "0|1" "0/0" "0/0"
## HiC_scaffold_79_60165305 "0|1" "0/0" NA
## HiC_scaffold_79_69145556 "0/0" "0/0" "0/1"
## HiC_scaffold_79_70208305 "0|1" NA "0|1"
## HiC_scaffold_79_73412292 "0/0" "0/0" "0/0"
## HiC_scaffold_79_73416663 "0/0" "1|1" "1|1"
## HiC_scaffold_79_73416688 "0/0" "0/0" "0/0"
## HiC_scaffold_79_76863102 "0/1" "0/1" "0/1"
## HiC_scaffold_79_81279649 "0/0" "0|1" "0/0"
## HiC_scaffold_79_81499990 "1/1" "1/1" "1/1"
## HiC_scaffold_79_82319836 "1|1" "0/0" "1|1"
## HiC_scaffold_79_82319849 "1|1" "0/1" "1|1"
## HiC_scaffold_79_83163707 "0/1" "0/1" "1/1"
## HiC_scaffold_79_86283512 "1/1" "0/0" "0/1"
## HiC_scaffold_79_87123758 "1|1" "1|1" "1|1"
## HiC_scaffold_79_88362889 "0/1" "0/0" "0/1"
## HiC_scaffold_79_88599431 "0/0" "1/1" NA
## HiC_scaffold_79_89322919 "0/0" "0/0" "1/1"
## HiC_scaffold_79_89331918 "0/0" "0/0" "1|1"
## HiC_scaffold_79_91340958 "1|1" "0/0" "0/0"
## HiC_scaffold_8_13649836 "0|1" "1|1" "1/1"
## HiC_scaffold_8_13650752 "1|1" "1|1" "1|1"
## HiC_scaffold_8_23818233 "1/1" "1/1" "1/1"
## HiC_scaffold_8_24123972 "1|1" "0/0" NA
## HiC_scaffold_8_24230791 "0/1" "0/0" "0|1"
## HiC_scaffold_8_24588423 "1|1" "0/0" "0/0"
## HiC_scaffold_8_25348483 "0/0" "1/1" NA
## HiC_scaffold_8_25421933 "1/1" "1/1" "0/1"
## HiC_scaffold_8_25772942 "1/1" "0/1" "0/0"
## HiC_scaffold_8_26289589 "1|1" "0/0" "0/0"
## HiC_scaffold_8_27602740 "0/0" "0/0" "0|1"
## HiC_scaffold_8_28159063 "1/1" "1/1" "1/1"
## HiC_scaffold_8_30829320 "0/1" "0/0" "0/0"
## HiC_scaffold_8_31044084 "0/0" NA "0/0"
## HiC_scaffold_8_31415507 "0/0" "0/0" "1|1"
## HiC_scaffold_8_32594682 "1|1" "1|1" "0/0"
## HiC_scaffold_80_3617847 "1/1" "0|1" NA
## HiC_scaffold_80_5758183 "0/0" "1|1" "1|1"
## HiC_scaffold_80_6760006 "0/0" "0/0" "0/0"
## HiC_scaffold_80_6760037 "0/0" "0/0" "0/0"
## HiC_scaffold_80_7772622 "1/1" "1/1" "1/1"
## HiC_scaffold_80_7919533 "0/0" "2|2" "0/0"
## HiC_scaffold_80_8110052 "0/0" "0/0" "0/0"
## HiC_scaffold_80_8193366 NA "1/1" "1/1"
## HiC_scaffold_80_8625784 "1/1" "1/1" "1/1"
## HiC_scaffold_80_8912846 "0/0" "0/1" "0/0"
## HiC_scaffold_80_9544102 "0/0" "1/1" "0/0"
## HiC_scaffold_80_10770701 "0/0" "0/1" "1/1"
## HiC_scaffold_80_11590146 "0/0" "0/0" "0/1"
## HiC_scaffold_80_16953653 "0/1" "0/1" "0/1"
## HiC_scaffold_80_18938832 "1|1" "1|1" "1|1"
## HiC_scaffold_80_19015946 "1/1" "1/1" "1/1"
## HiC_scaffold_80_19404001 "1/1" "1/1" "1/1"
## HiC_scaffold_80_25346708 "0/1" "0/1" "1|1"
## HiC_scaffold_80_37479851 "0/1" "0/0" "0/0"
## HiC_scaffold_80_37507516 "1/1" "0/1" "0/1"
## HiC_scaffold_81_1187192 "0/0" "1/1" "0/1"
## HiC_scaffold_81_2689826 "0|1" "0|1" "1|1"
## HiC_scaffold_81_2690751 "1|1" "0/0" "0/0"
## HiC_scaffold_81_6614123 "0/1" "0/1" "0/1"
## HiC_scaffold_81_7836855 "0/1" "0/0" "0/1"
## HiC_scaffold_81_10334868 "0/0" "0/1" "1/1"
## HiC_scaffold_81_10458752 "0/1" NA "1/1"
## HiC_scaffold_81_17515538 "1|1" "1/1" NA
## HiC_scaffold_81_40271282 NA "0/0" "0/0"
## HiC_scaffold_81_40271294 "0/0" "1/1" "1/1"
## HiC_scaffold_81_41096427 "0|1" "0/0" "0|1"
## HiC_scaffold_81_41096444 "0|1" "0/0" "0|1"
## HiC_scaffold_81_43820595 "0/1" "0/0" "0/0"
## HiC_scaffold_81_43820732 "1|1" "0/0" "0/0"
## HiC_scaffold_81_43854278 "0/0" NA "0/1"
## HiC_scaffold_81_44804862 "1/1" "0/0" "1/1"
## HiC_scaffold_81_45063428 "0/1" "0/0" "0/0"
## HiC_scaffold_81_45950590 "0/1" "1/1" "0/0"
## HiC_scaffold_81_46714752 "1|1" "0/0" "1|1"
## HiC_scaffold_81_46714759 "1|1" "0/0" "1|1"
## HiC_scaffold_81_47170397 "1|1" "1|1" "1|1"
## HiC_scaffold_81_47628201 "0|1" NA "1|1"
## HiC_scaffold_81_48105216 "1|1" NA "0/0"
## HiC_scaffold_81_48932070 "0/0" "0/0" NA
## HiC_scaffold_81_54050146 "1/1" "1/1" "1/1"
## HiC_scaffold_82_5672063 "0/0" "1/1" "1/1"
## HiC_scaffold_82_8796823 "0/0" "0/1" NA
## HiC_scaffold_82_13450959 "0/1" "0/1" "0/0"
## HiC_scaffold_82_26144442 "0/0" "1/1" NA
## HiC_scaffold_82_26147011 "0/0" "1|1" "1|1"
## HiC_scaffold_82_28907834 "0/1" "1/1" "1/1"
## HiC_scaffold_82_34413793 "0|1" "1/1" "1|1"
## HiC_scaffold_82_34413800 "0/0" "1/1" "1|1"
## HiC_scaffold_82_36173035 "0/0" "0/1" "0/0"
## HiC_scaffold_82_40539273 "1/1" "0/0" "0/1"
## HiC_scaffold_82_41470256 "1/1" "1/1" "1/1"
## HiC_scaffold_83_23993605 "0/0" "0/1" "0/0"
## HiC_scaffold_83_35035961 "1/1" "0/0" "0/1"
## HiC_scaffold_83_43423618 "0/0" "0/0" NA
## HiC_scaffold_83_46920654 "0/0" "0/0" "1/1"
## HiC_scaffold_83_46934197 "1|1" "0/1" "1/1"
## HiC_scaffold_84_356301 "1|1" "1|1" "0/0"
## HiC_scaffold_84_5761817 NA "0/0" "0/1"
## HiC_scaffold_84_5769022 "0/0" NA "0/0"
## HiC_scaffold_84_6288130 "0|1" "0/0" "0/0"
## HiC_scaffold_84_6288141 "1/1" "1|1" "1/1"
## HiC_scaffold_84_6288147 "0/1" "0/0" "0/0"
## HiC_scaffold_84_7069238 "0|1" "0/0" NA
## HiC_scaffold_84_9131309 "1/1" "1/1" "0/1"
## HiC_scaffold_84_10148442 NA "0/1" "0/1"
## HiC_scaffold_84_14659391 "0|1" "0|1" "1/1"
## HiC_scaffold_84_16302752 "2|2" NA "1/1"
## HiC_scaffold_84_18463244 "1/1" "1/1" "1/1"
## HiC_scaffold_84_22909575 "0/0" "0/0" "1|1"
## HiC_scaffold_84_29275266 "0/0" "0/1" "0/0"
## HiC_scaffold_84_31184610 "1/1" "1/1" "0/1"
## HiC_scaffold_84_33093169 "1|1" "0/0" "1|1"
## HiC_scaffold_84_37675180 "0/1" "0/0" NA
## HiC_scaffold_84_39501814 "0/1" "0/0" "0/1"
## HiC_scaffold_84_50169438 "1|1" "0/0" "0/0"
## HiC_scaffold_84_50169445 "1|1" NA "0/0"
## HiC_scaffold_84_51231025 "0|1" "0|1" "0/0"
## HiC_scaffold_85_9792207 "0/0" "0/0" "1|1"
## HiC_scaffold_85_11784233 "1|1" "1/1" "0/1"
## HiC_scaffold_85_11911022 "0/1" "0/1" "1|1"
## HiC_scaffold_85_11911142 "0/1" "0/0" "0/0"
## HiC_scaffold_85_11913828 NA "0/0" "0/0"
## HiC_scaffold_85_11913831 "0/0" "1/1" "1/1"
## HiC_scaffold_85_12353081 "1/1" "0/0" "1/1"
## HiC_scaffold_85_12414551 "0/0" "0/0" "0/0"
## HiC_scaffold_85_13043967 "1|1" "0|1" NA
## HiC_scaffold_85_13221888 "0/1" NA "1/1"
## HiC_scaffold_85_27008863 "0/0" "0/0" "1/1"
## HiC_scaffold_85_28992264 "0|1" "0/1" "0/0"
## HiC_scaffold_85_28992268 "0/1" "0|1" "0/1"
## HiC_scaffold_85_64310850 "1|1" "0/1" "1|1"
## HiC_scaffold_85_65135112 "0/0" "0/0" "0/0"
## HiC_scaffold_85_65563529 "0/0" "1/1" "0/0"
## HiC_scaffold_86_1949664 "1|1" "1|1" "1|1"
## HiC_scaffold_86_5340423 "0/1" "0/1" "1/1"
## HiC_scaffold_86_5483991 "0/0" "1|1" "0/1"
## HiC_scaffold_86_8928469 "0|1" "1/1" "0/0"
## HiC_scaffold_86_23727924 "0/0" "0/0" "0/0"
## HiC_scaffold_86_24825818 "1|1" "0/1" NA
## HiC_scaffold_86_25333718 "0/1" NA "0/0"
## HiC_scaffold_86_29668168 "2/2" "0/0" NA
## HiC_scaffold_86_30914243 "1|1" "0/0" NA
## HiC_scaffold_86_32040320 "1|1" "0|1" "1|1"
## HiC_scaffold_86_32040329 "1|1" "0|1" "1|1"
## HiC_scaffold_86_32125061 "1/1" "0/0" "0/0"
## HiC_scaffold_86_32144758 "0/0" "0/1" "0/1"
## HiC_scaffold_86_32153692 "1/1" "1/1" "1/1"
## HiC_scaffold_86_32534129 "0/1" "1/1" "0/0"
## HiC_scaffold_86_32605768 "1|1" "0/0" NA
## HiC_scaffold_86_36355399 "0/0" NA NA
## HiC_scaffold_86_36357265 "1/1" "1|1" "1/1"
## HiC_scaffold_87_1253643 "0/0" "1/1" "0/1"
## HiC_scaffold_87_2137958 "0/0" "0/1" NA
## HiC_scaffold_87_3980100 "1/1" "0/1" "1/1"
## HiC_scaffold_87_4395923 "0/1" "0/0" "0/1"
## HiC_scaffold_87_5489328 "0/1" "1|1" NA
## HiC_scaffold_87_6300441 "1/1" "0/0" "1/1"
## HiC_scaffold_87_16306904 "0/1" "1/1" "0/1"
## HiC_scaffold_87_44780945 "1|1" "1|1" "0/0"
## HiC_scaffold_88_5584327 "1/1" "0|1" "1/1"
## HiC_scaffold_88_7104630 "0/0" "0|1" "1|1"
## HiC_scaffold_88_7104631 "0/0" "0|1" "1|1"
## HiC_scaffold_88_7104638 "1|1" "1/1" "1|1"
## HiC_scaffold_88_7104639 "0/0" "0/1" "1|1"
## HiC_scaffold_88_7104640 "1|1" "0|1" "1|1"
## HiC_scaffold_88_7479340 "0|1" "0/0" "0/1"
## HiC_scaffold_88_8773607 "0/0" "1|1" "1|1"
## HiC_scaffold_88_9883678 "1|1" "1|1" NA
## HiC_scaffold_88_10878718 "0/0" "0/1" "0/0"
## HiC_scaffold_88_19365116 "0/1" "1/1" "0/1"
## HiC_scaffold_88_20477349 "0/0" "1/1" "1/1"
## HiC_scaffold_88_20557885 "1/1" "0|1" "1/1"
## HiC_scaffold_89_675045 "0/0" "1/1" "0/1"
## HiC_scaffold_89_2815845 "0/0" "2|2" "0/0"
## HiC_scaffold_89_2843940 "1/1" "0/0" "0/0"
## HiC_scaffold_89_3018830 "1/1" "1/1" "1/1"
## HiC_scaffold_89_13745506 "0/0" "1/1" "1/1"
## HiC_scaffold_89_30006907 "0/0" NA NA
## HiC_scaffold_89_36509388 "1|1" "1|1" NA
## HiC_scaffold_89_38703735 NA "0/0" "1/1"
## HiC_scaffold_89_38764895 NA NA "1/1"
## HiC_scaffold_89_42052609 "0/1" "1/1" "0/0"
## HiC_scaffold_89_42054991 "1/1" "0/1" "0/0"
## HiC_scaffold_89_44306958 "0/1" "0/1" "1/1"
## HiC_scaffold_89_44338206 "0/0" "0/1" "0/0"
## HiC_scaffold_89_45298973 "1/1" "1/1" "1/1"
## HiC_scaffold_9_3529921 "1|1" "0/0" "0/0"
## HiC_scaffold_9_5660454 "0/0" "1|1" "1|1"
## HiC_scaffold_9_5660461 "1/1" "1|1" "1|1"
## HiC_scaffold_9_5854070 "1/1" "1/1" "1/1"
## HiC_scaffold_9_6142415 "0|1" "0/0" "1|1"
## HiC_scaffold_9_6142436 "0|1" "0/0" "1|1"
## HiC_scaffold_9_6143781 "0/1" "0/0" "1/1"
## HiC_scaffold_9_6654825 "1/1" "0/0" "0/1"
## HiC_scaffold_9_7094545 "1|1" "1|1" "1|1"
## HiC_scaffold_9_7100208 "0/0" "1|1" "1|1"
## HiC_scaffold_9_7109988 "1/1" "0/1" "0/0"
## HiC_scaffold_9_7111922 "1|1" "0/1" NA
## HiC_scaffold_9_8235781 NA "0/1" "0/0"
## HiC_scaffold_9_8279558 "0/1" "1/1" "1/1"
## HiC_scaffold_9_15679481 "1|1" "0/0" "0|1"
## HiC_scaffold_9_18082611 "0/0" "0/0" "0/0"
## HiC_scaffold_9_18090830 "0/0" NA "1/1"
## HiC_scaffold_9_30240531 "1/1" "1/1" "1/1"
## HiC_scaffold_90_10418696 "0/0" "0/0" "0/0"
## HiC_scaffold_90_11470224 "0/0" "0/0" NA
## HiC_scaffold_90_13593319 "0/1" "0/0" "0/0"
## HiC_scaffold_90_16260161 "0/0" "0/1" NA
## HiC_scaffold_90_22325499 "0/1" "1/1" NA
## HiC_scaffold_90_23574204 "0/0" "0/0" "0/0"
## HiC_scaffold_90_23609908 "0/1" "0/0" "1|1"
## HiC_scaffold_90_23623078 "0/1" "1|1" "0/0"
## HiC_scaffold_90_23626883 NA "0/0" "0/0"
## HiC_scaffold_90_23812663 NA "1/1" "1/1"
## HiC_scaffold_90_25939283 "0/0" "1/1" "1/1"
## HiC_scaffold_90_25985714 "1/1" "0/0" "0/0"
## HiC_scaffold_90_30751272 "0/0" NA NA
## HiC_scaffold_90_31232025 "1|1" "1|1" "1|1"
## HiC_scaffold_90_31245699 "1/1" "0/0" NA
## HiC_scaffold_90_31527975 NA "1/1" "0/0"
## HiC_scaffold_90_31546172 "0/0" "0/1" "0/0"
## HiC_scaffold_90_38511996 NA "1|1" "0/0"
## HiC_scaffold_90_38511999 NA "1|1" "0/0"
## HiC_scaffold_90_38517279 "0/0" "0/0" "1/1"
## HiC_scaffold_90_40624104 NA "0/0" NA
## HiC_scaffold_91_5644765 "1|1" "1|1" "0/0"
## HiC_scaffold_91_5867214 "0/0" "0|1" NA
## HiC_scaffold_91_5867226 "0/0" "0|1" NA
## HiC_scaffold_91_7704263 "1|1" "0/0" "1|1"
## HiC_scaffold_91_7871360 "0/0" NA "0/1"
## HiC_scaffold_91_8538014 "1/1" NA NA
## HiC_scaffold_91_13230485 "0/0" "0/0" NA
## HiC_scaffold_91_28696118 "0/1" "0/0" "0/1"
## HiC_scaffold_91_28696625 "0/0" "1|1" "1|1"
## HiC_scaffold_91_42177482 "1|1" "1|1" "0/0"
## HiC_scaffold_91_46813640 NA "1|2" "0/0"
## HiC_scaffold_92_23783035 "0/1" "0/0" "2|2"
## HiC_scaffold_92_23783036 "0/1" "0/0" "2|2"
## HiC_scaffold_92_24712793 "0/1" "1/1" "0/1"
## HiC_scaffold_92_28698258 "0/0" "0/0" "1/1"
## HiC_scaffold_92_40691582 "0/0" NA "0/0"
## HiC_scaffold_92_43967712 "1/1" "1/1" NA
## HiC_scaffold_92_47147572 "0/0" "1|1" "0/0"
## HiC_scaffold_92_49042714 "0/0" "1|1" "1|1"
## HiC_scaffold_92_49042715 "0/0" "1|1" "1|1"
## HiC_scaffold_92_53634002 "0/1" "0/0" "1/1"
## HiC_scaffold_92_58211868 "0/1" "0/1" NA
## HiC_scaffold_92_60114155 "0/0" "1|1" "0/0"
## HiC_scaffold_92_63603483 "0/0" "1|1" "0/0"
## HiC_scaffold_92_64797225 "0/0" "0/0" "0/0"
## HiC_scaffold_92_68367476 "0|2" "0/0" "0/1"
## HiC_scaffold_93_1912167 "1|1" NA NA
## HiC_scaffold_93_2485978 "0/0" "0/0" "1/1"
## HiC_scaffold_93_3227638 "0/0" "0/0" "0/1"
## HiC_scaffold_93_3227641 "0/0" NA "0|1"
## HiC_scaffold_93_13971208 "0/0" "0/0" "1/1"
## HiC_scaffold_93_13987080 "1/1" "0/1" NA
## HiC_scaffold_93_21125468 "0/1" "0/0" "1/1"
## HiC_scaffold_93_21845293 "0/0" "0/0" "0/0"
## HiC_scaffold_93_21845310 "0/0" "0/0" "0/0"
## HiC_scaffold_93_21846342 "0/0" "1/1" "0/0"
## HiC_scaffold_93_21846356 "0/0" "0/0" "1/1"
## HiC_scaffold_93_22589723 "0/0" NA "1/1"
## HiC_scaffold_93_22619278 "1/1" "1/1" "1/1"
## HiC_scaffold_93_22631258 "1|1" "1|1" "1|1"
## HiC_scaffold_93_22631266 "1|1" "1|1" "1|1"
## HiC_scaffold_94_3110102 "0/0" "1/1" "0/0"
## HiC_scaffold_94_3205919 "1/1" "0/0" NA
## HiC_scaffold_94_9023846 "0/1" "0/0" "0/0"
## HiC_scaffold_94_11572820 NA "1/1" "1/1"
## HiC_scaffold_94_12368532 "0/0" "0/0" "0/0"
## HiC_scaffold_94_42179418 "1/1" NA "1/1"
## HiC_scaffold_94_42179519 "0/0" "0/1" "0/0"
## HiC_scaffold_94_51646206 "0/0" "0/0" "0/0"
## HiC_scaffold_94_52781289 "1/1" "0/0" "1/1"
## HiC_scaffold_94_53790035 "0/0" "0/1" "0/0"
## HiC_scaffold_94_53792738 "0/1" NA "0/0"
## HiC_scaffold_94_56768905 "1|1" "1|1" "0/0"
## HiC_scaffold_946_81276 "0/1" "1/1" "1/1"
## HiC_scaffold_95_3189690 "0/1" "0/0" NA
## HiC_scaffold_95_4397298 "1|1" "1/1" "1|1"
## HiC_scaffold_95_9469157 "1|1" "0|1" "0/0"
## HiC_scaffold_95_10641411 "1/1" NA NA
## HiC_scaffold_95_10949821 "1/1" "1/1" "1/1"
## HiC_scaffold_95_12993394 "0|1" "0|1" "0/0"
## HiC_scaffold_95_15515793 NA "0|1" "0/0"
## HiC_scaffold_95_15608785 "1|1" "1|1" "0/0"
## HiC_scaffold_95_15609137 "1/1" "0/1" "0/0"
## HiC_scaffold_95_16295316 "1/1" "0/0" "0/1"
## HiC_scaffold_95_22656165 "0|1" "0|1" "1|1"
## HiC_scaffold_95_25885727 "0/0" "0/0" "1/1"
## HiC_scaffold_96_10460019 "0/0" NA "1/1"
## HiC_scaffold_96_27155785 NA "0/1" "0/1"
## HiC_scaffold_96_37939434 "1/1" "0|1" "0/0"
## HiC_scaffold_96_51115048 "1/1" "1/1" "1/1"
## HiC_scaffold_96_51116511 "0/1" "1/1" "0/1"
## HiC_scaffold_96_51915040 "1|1" NA "1|1"
## HiC_scaffold_96_52681287 "0/1" "0/1" "0/0"
## HiC_scaffold_96_53276519 "0/1" "0/0" NA
## HiC_scaffold_97_1736926 "0/0" "0/0" "0/0"
## HiC_scaffold_97_1736994 "0/0" "0/0" "0/0"
## HiC_scaffold_97_3863543 "1/1" "1/1" "0/0"
## HiC_scaffold_97_4200445 "0/0" "0/1" "1/1"
## HiC_scaffold_97_4799162 "0/1" "0/0" "0/1"
## HiC_scaffold_97_5027892 "0/1" "0/1" "1/1"
## HiC_scaffold_97_8007933 "0/0" "0/0" "0/1"
## HiC_scaffold_97_17997210 "0/0" "0|1" "0/0"
## HiC_scaffold_97_18604647 "1/1" "1/1" "1/1"
## HiC_scaffold_97_20239636 "0/0" "0/1" "0|1"
## HiC_scaffold_98_15154096 "0/0" "0/0" "0|1"
## HiC_scaffold_98_22342667 "0/1" "1/1" "0/0"
## HiC_scaffold_98_22634293 NA NA "1|1"
## HiC_scaffold_98_22634294 NA NA "1|1"
## HiC_scaffold_98_22721138 NA "0/1" "1/1"
## HiC_scaffold_98_22869378 "0/0" "0/1" "0/0"
## HiC_scaffold_98_24108405 "0/0" "0/0" "0/0"
## HiC_scaffold_98_27359592 "0|1" NA "0|1"
## HiC_scaffold_98_28549834 "0/0" "0/0" "0/1"
## HiC_scaffold_98_28867520 "1|1" "1|1" "1/1"
## HiC_scaffold_98_28867524 "1|1" "1|1" "1/2"
## HiC_scaffold_98_29431717 "0/1" "1|1" "0/1"
## HiC_scaffold_98_29675109 "0/1" "1/1" "0/0"
## HiC_scaffold_99_1163244 "0/0" "1|1" "0/0"
## HiC_scaffold_99_1451611 "0/0" "0/1" "0/1"
## HiC_scaffold_99_2021961 "0/0" "0/0" "0/0"
## HiC_scaffold_99_5134392 "0/1" "0/0" "0/0"
## HiC_scaffold_99_5239109 "1/1" "1/1" "1/1"
## HiC_scaffold_99_6917738 "1|1" "1|1" "1|1"
## HiC_scaffold_99_11221970 "0/0" "0/0" NA
## HiC_scaffold_99_25982503 "1/1" "1/1" "1/1"
## Tank_18_Crab_1 Tank_18_Crab_2 Tank_18_Crab_3
## HiC_scaffold_1_2523394 "0/0" NA "0/0"
## HiC_scaffold_1_2542157 "1/1" NA "0/0"
## HiC_scaffold_1_2647806 "1/1" "1/1" "1/1"
## HiC_scaffold_1_2970226 "0/0" "0/0" "0/1"
## HiC_scaffold_1_3329447 "1|2" "0/0" "0/0"
## HiC_scaffold_1_3795100 "1|1" "0/0" "1|1"
## HiC_scaffold_10_2221345 "0/0" "0/0" "1/1"
## HiC_scaffold_10_2299490 "1/1" "0/0" "0/1"
## HiC_scaffold_10_2565301 "0/0" "1/1" "1/1"
## HiC_scaffold_10_3864355 NA "0/1" NA
## HiC_scaffold_10_4319900 "1|1" "1|1" "0/0"
## HiC_scaffold_10_4319907 "1|1" "1|1" "0/0"
## HiC_scaffold_10_5404579 "0/0" "1/1" "0/0"
## HiC_scaffold_10_5843373 "0/0" "0/1" "1/1"
## HiC_scaffold_100_854947 "0/0" "0/0" "1|1"
## HiC_scaffold_100_1070817 "1/1" NA "1/1"
## HiC_scaffold_100_2002094 "0/0" "1|1" "1|1"
## HiC_scaffold_100_2002097 "0/0" "1|1" "1|1"
## HiC_scaffold_100_2010331 "1|1" "0/0" "0/0"
## HiC_scaffold_100_5186498 "1/1" "1/1" "1/1"
## HiC_scaffold_100_5828477 "1/1" NA "0/1"
## HiC_scaffold_100_6470419 "0/0" "0/0" "0/0"
## HiC_scaffold_100_6739225 "1/1" "1/1" "0/0"
## HiC_scaffold_100_6739258 "1|1" "1|1" "0|1"
## HiC_scaffold_100_6739264 "1|1" "1|1" "0|1"
## HiC_scaffold_100_6907177 "0/0" "0/0" "0/0"
## HiC_scaffold_100_8384481 "0/0" "1/1" "1|1"
## HiC_scaffold_100_8384495 "0/0" "1/1" "1|1"
## HiC_scaffold_100_9451470 "0/1" NA "0/0"
## HiC_scaffold_100_10464574 "1/1" "0/0" "1/1"
## HiC_scaffold_100_11934792 "0|1" "0/0" "0/0"
## HiC_scaffold_100_11980177 "1/1" "0|1" "1|1"
## HiC_scaffold_100_18465760 "0|1" "0|1" "1|1"
## HiC_scaffold_100_18465762 "0|1" "0|1" "1|1"
## HiC_scaffold_100_18466205 NA "0/0" "2/2"
## HiC_scaffold_100_31738115 "1/1" NA "0/1"
## HiC_scaffold_100_44227362 "1/1" "1/1" "1/1"
## HiC_scaffold_101_12808961 "0/0" "0/0" "0|1"
## HiC_scaffold_101_13897149 NA "0/0" "1/1"
## HiC_scaffold_101_18337279 "0/0" "0/0" "0/0"
## HiC_scaffold_101_20800167 "1/1" NA "1/1"
## HiC_scaffold_102_2260041 "0/0" "0/0" "0/0"
## HiC_scaffold_102_8734519 NA NA "0/1"
## HiC_scaffold_102_10233999 "1|1" "0/0" "1|1"
## HiC_scaffold_102_11446042 "1/1" "0/0" "1/1"
## HiC_scaffold_102_15918694 "1/1" NA "0/1"
## HiC_scaffold_102_15935667 NA NA "0/0"
## HiC_scaffold_102_17442643 "1/1" "1/1" NA
## HiC_scaffold_102_17608969 "0/0" "1/1" NA
## HiC_scaffold_102_20180185 "1/1" NA "1/1"
## HiC_scaffold_102_24788723 "0/1" "0/0" "1/1"
## HiC_scaffold_102_25423729 "1|1" "0/0" "1|1"
## HiC_scaffold_102_39755142 "0/1" "1/1" NA
## HiC_scaffold_102_52046978 "1/1" "0/0" "1/1"
## HiC_scaffold_1027_34152 "0/0" "0/0" "0/1"
## HiC_scaffold_103_601715 "0/0" "0/0" "0/0"
## HiC_scaffold_103_2891384 "0/0" NA "1/1"
## HiC_scaffold_103_8191270 "0/0" "0/0" "0|2"
## HiC_scaffold_103_9521272 "1/1" "1/1" "0/0"
## HiC_scaffold_103_14768909 NA "1|1" "1|1"
## HiC_scaffold_103_19312119 "1/1" "1|1" "0/0"
## HiC_scaffold_103_21284866 "0/0" "0/0" "1/1"
## HiC_scaffold_103_31428453 "0/0" "0|1" "0/0"
## HiC_scaffold_103_42567396 "0/1" "0/0" "0/1"
## HiC_scaffold_103_45921571 "0/0" "0/0" "1|1"
## HiC_scaffold_103_45921573 "0/0" "0/0" "1|1"
## HiC_scaffold_103_49592022 "0/0" NA "0/1"
## HiC_scaffold_103_49620132 NA NA "0/1"
## HiC_scaffold_103_50440915 "1|1" "0/0" "0/0"
## HiC_scaffold_103_51944137 "1/1" NA "0/0"
## HiC_scaffold_103_54308582 "1|1" "0/0" "0/0"
## HiC_scaffold_103_54424067 "0/1" NA "1|1"
## HiC_scaffold_103_56932900 NA "1/1" "0/1"
## HiC_scaffold_103_57470264 "0/0" "1|1" "1/1"
## HiC_scaffold_104_7771140 "1/1" "1/1" "1/1"
## HiC_scaffold_104_9103028 NA NA "0/0"
## HiC_scaffold_104_10633168 "0/0" "0/0" "0/0"
## HiC_scaffold_104_18917031 "1/1" "0|1" "1|1"
## HiC_scaffold_104_20851902 "1/1" NA "1/1"
## HiC_scaffold_104_24451803 "1/1" "0/0" "0/0"
## HiC_scaffold_104_28597688 "0|1" NA "0/1"
## HiC_scaffold_104_40927999 "0/0" "1/1" "0/0"
## HiC_scaffold_104_46490074 NA "0/0" "1/1"
## HiC_scaffold_104_49759053 "1/1" "0/0" "0/0"
## HiC_scaffold_104_57267896 "1/1" NA NA
## HiC_scaffold_104_62570010 "0/0" "1/1" "0/1"
## HiC_scaffold_11_32804173 "0/0" "0/0" "0/0"
## HiC_scaffold_11_34516508 NA "1/1" "1|1"
## HiC_scaffold_11_35332996 "1/1" NA "0/1"
## HiC_scaffold_11_35904027 "1/1" "0/0" "0/0"
## HiC_scaffold_11_41539793 "0/0" "1|1" "0/1"
## HiC_scaffold_11_41604080 "1|1" NA "1/1"
## HiC_scaffold_11_42855323 "1/1" "0/0" NA
## HiC_scaffold_11_45339409 "0/0" NA "1/1"
## HiC_scaffold_11_45339410 "1|1" NA "0/0"
## HiC_scaffold_11_47544035 NA NA "1/1"
## HiC_scaffold_12_7515164 "0/0" NA "0/0"
## HiC_scaffold_12_12640100 "0/0" "0/0" "0/0"
## HiC_scaffold_12_12826705 "1|1" NA "0/0"
## HiC_scaffold_12_14899285 "0/0" NA "0/1"
## HiC_scaffold_12_17465672 "1/1" NA "1/1"
## HiC_scaffold_12_22770710 "1|1" "0/0" NA
## HiC_scaffold_12_32318964 "1|1" "0/0" "1|1"
## HiC_scaffold_12_35136373 "1|1" NA "0/0"
## HiC_scaffold_12_40687860 "1|1" "1|1" NA
## HiC_scaffold_13_2938168 "1/1" "1/1" "1/1"
## HiC_scaffold_13_20350974 "0/0" "1/1" "0/0"
## HiC_scaffold_13_27759554 "0/0" "1/1" "1/1"
## HiC_scaffold_13_28146828 "0/0" "0/0" "0|2"
## HiC_scaffold_13_28146830 "0/0" "0/0" "0|2"
## HiC_scaffold_13_28925343 "1/1" "1/1" "1/1"
## HiC_scaffold_13_31913129 "0/1" NA NA
## HiC_scaffold_13_32078924 "0/0" NA "0/0"
## HiC_scaffold_13_33864805 "1/1" "1/1" "1/1"
## HiC_scaffold_13_34892542 NA NA "0/1"
## HiC_scaffold_13_34893103 "1/1" "0/0" "1/1"
## HiC_scaffold_13_35762551 "0|1" "0|1" "0|1"
## HiC_scaffold_13_35881745 "1/1" "1/1" "0/1"
## HiC_scaffold_13_35881749 "0/0" "0/0" "0/0"
## HiC_scaffold_14_3843214 "0/0" NA "1/1"
## HiC_scaffold_14_25884262 "0/2" "0/0" "0/2"
## HiC_scaffold_14_27050415 "1/1" "1/1" "1/1"
## HiC_scaffold_14_27118495 "1/1" "1/1" "1/1"
## HiC_scaffold_14_27277222 "1/1" "0/0" "0/0"
## HiC_scaffold_14_29215814 "1|1" NA "1|1"
## HiC_scaffold_15_2460398 "1|1" "1|1" "1|1"
## HiC_scaffold_15_2462980 "1/1" "1/1" "0/0"
## HiC_scaffold_15_2467289 "1/1" "1/1" "1/1"
## HiC_scaffold_15_5669141 "1/1" "0/1" "1/1"
## HiC_scaffold_15_13700694 NA "0/0" "0/0"
## HiC_scaffold_15_17825275 "0/0" NA "1|1"
## HiC_scaffold_15_19938475 "0/1" "1/1" "0/1"
## HiC_scaffold_15_23865956 "0/0" "0/0" "1|1"
## HiC_scaffold_15_28837774 "1|1" NA NA
## HiC_scaffold_15_28837810 "0/0" "0/0" "0/1"
## HiC_scaffold_15_28837823 NA "1|1" "0/1"
## HiC_scaffold_15_28837835 "0/0" "1|1" "0/0"
## HiC_scaffold_15_28837841 NA "0/0" "0/0"
## HiC_scaffold_15_28837854 "0/0" "1/1" "1/1"
## HiC_scaffold_15_34827832 "0/0" "0/1" "0/0"
## HiC_scaffold_15_34893807 "0/1" "1/1" "0/1"
## HiC_scaffold_15_35327348 "0/0" "1/1" "0/0"
## HiC_scaffold_15_42161112 "0/0" "1|1" "0/0"
## HiC_scaffold_15_42164926 "0/0" "1|1" "1|1"
## HiC_scaffold_15_42164946 "0/0" "1/1" "1/1"
## HiC_scaffold_15_46289572 "0/0" "1/1" "1|1"
## HiC_scaffold_15_50591576 "1|1" "0/0" "1|1"
## HiC_scaffold_15_50759128 "0/1" "1/1" "0/1"
## HiC_scaffold_15_51188336 "0/1" "0/0" "1|1"
## HiC_scaffold_15_54726640 "1/1" NA "1/1"
## HiC_scaffold_15_54788235 "1/1" "1/1" "0/0"
## HiC_scaffold_15_56162375 NA NA "0/0"
## HiC_scaffold_15_61091106 "0/0" NA "1/1"
## HiC_scaffold_15_61464359 NA NA "1/1"
## HiC_scaffold_15_61510386 "1/1" "1/1" "1/1"
## HiC_scaffold_15_62309788 "1|1" NA "0/0"
## HiC_scaffold_15_62309793 "1|1" NA "0/0"
## HiC_scaffold_15_62771254 "0/0" "0/0" "1/1"
## HiC_scaffold_15_63493927 NA "1/1" "1/1"
## HiC_scaffold_15_64997502 "0/1" "0/0" "0/0"
## HiC_scaffold_15_65007865 "1|1" "1|1" NA
## HiC_scaffold_15_65007879 "0/0" "1|1" NA
## HiC_scaffold_15_66038529 "0/0" NA "1/1"
## HiC_scaffold_15_69811281 "1/1" "0/1" "1/1"
## HiC_scaffold_16_14205925 NA NA "0/1"
## HiC_scaffold_16_30404047 "0/0" "1/1" "0/1"
## HiC_scaffold_16_57413288 "0|1" "1|1" "1|1"
## HiC_scaffold_16_63687578 "0/0" "0/0" "0|1"
## HiC_scaffold_16_74138787 "0/0" "0/1" "1/1"
## HiC_scaffold_16_74140106 "0/0" NA "0/0"
## HiC_scaffold_16_76276015 "0/0" "0/0" "0/0"
## HiC_scaffold_17_11390873 "0/0" "0/0" "0|1"
## HiC_scaffold_17_12551128 "0/1" "1/1" NA
## HiC_scaffold_17_16615612 "1/1" "0/0" "0/1"
## HiC_scaffold_17_18838093 "0/0" "0/1" "1|1"
## HiC_scaffold_17_22801072 "1/1" "1/1" "0/1"
## HiC_scaffold_17_23788599 "0/1" "0/0" "1/1"
## HiC_scaffold_17_29383895 NA NA NA
## HiC_scaffold_17_29618771 "1/1" "0/0" "0/0"
## HiC_scaffold_17_29976139 "1/1" NA "1/1"
## HiC_scaffold_17_31107213 "1/1" NA "0/1"
## HiC_scaffold_17_32493792 "1/1" NA "0/0"
## HiC_scaffold_17_33732050 "0/1" "0/0" "0/1"
## HiC_scaffold_17_33801314 "0/0" NA "0/1"
## HiC_scaffold_17_34081889 "1/1" NA "1/1"
## HiC_scaffold_18_227565 "1/1" "0/0" NA
## HiC_scaffold_18_1213486 "0/1" "1/1" "1/1"
## HiC_scaffold_18_1701312 "1|1" "0/0" "0/0"
## HiC_scaffold_18_3506437 "1/1" NA "1/1"
## HiC_scaffold_18_6304978 NA "0/0" "1/1"
## HiC_scaffold_18_6351493 "1/1" "0/1" "1/1"
## HiC_scaffold_18_6358009 "1/1" NA "0/0"
## HiC_scaffold_18_10770701 "0/0" "0/0" "0/0"
## HiC_scaffold_18_13342858 "1/1" "0/0" "1/1"
## HiC_scaffold_18_20045832 NA NA "0/0"
## HiC_scaffold_18_22682683 "1/1" "0/1" "0/0"
## HiC_scaffold_18_26337790 "0/0" "1|1" "0/0"
## HiC_scaffold_18_48929148 "1|1" "0/0" "0/1"
## HiC_scaffold_18_51490626 "0/0" NA "0/0"
## HiC_scaffold_18_53723137 NA NA "0|1"
## HiC_scaffold_18_54496637 "0/0" "0/0" "0/0"
## HiC_scaffold_18_55294388 "0/1" "0/0" NA
## HiC_scaffold_19_279726 "1/1" "0/0" "0/0"
## HiC_scaffold_19_6426572 NA NA "1/1"
## HiC_scaffold_19_6575887 "1|1" NA "1|1"
## HiC_scaffold_19_7755254 "0/0" NA "0/0"
## HiC_scaffold_19_9301421 "0/1" "0/0" "0/0"
## HiC_scaffold_19_9357388 NA "1|1" "0|1"
## HiC_scaffold_19_9778841 "1/1" NA "1/1"
## HiC_scaffold_19_10928976 NA "1|1" "1/1"
## HiC_scaffold_19_10928980 NA "1|1" "0/1"
## HiC_scaffold_19_10928982 NA "0/0" "0/0"
## HiC_scaffold_19_11106347 "0/1" NA "0/0"
## HiC_scaffold_19_11590139 "0/1" "0/0" "0/0"
## HiC_scaffold_19_11665300 NA NA "1/1"
## HiC_scaffold_19_14793640 "1/1" "1/1" "0/0"
## HiC_scaffold_19_22112743 NA "1|1" "1|1"
## HiC_scaffold_19_25473671 NA "1/1" "1/1"
## HiC_scaffold_19_25473692 "0/0" "1/1" "0/1"
## HiC_scaffold_19_28110829 "1|1" "0/0" "0/0"
## HiC_scaffold_19_28465002 "1/1" "0/0" "0/1"
## HiC_scaffold_19_28465167 "1/1" NA "0/0"
## HiC_scaffold_19_30106869 "1|1" "1|1" "1|1"
## HiC_scaffold_19_52538858 "1/1" NA "1/1"
## HiC_scaffold_19_52596196 "0/0" NA "0/0"
## HiC_scaffold_19_53482993 "1/1" "1/1" "1/1"
## HiC_scaffold_19_54312637 "1/1" NA "1|1"
## HiC_scaffold_19_59345841 "0/0" "0/0" "0/0"
## HiC_scaffold_2_3296144 "0/0" NA "1|1"
## HiC_scaffold_2_3418589 "0/0" "0/0" "1/1"
## HiC_scaffold_2_3864060 "1/1" "1/1" "1/1"
## HiC_scaffold_2_4104755 "0/0" "0|1" "0/0"
## HiC_scaffold_2_4104758 "0/0" "0|1" "0/0"
## HiC_scaffold_2_8316721 "0/0" "0/0" "0/0"
## HiC_scaffold_2_9098999 "1/1" NA "0/0"
## HiC_scaffold_2_10457537 NA "0/1" "1/1"
## HiC_scaffold_2_19048125 "0/1" "0/0" "1/1"
## HiC_scaffold_2_21748201 "1/1" NA "1/1"
## HiC_scaffold_2_33187764 "1/1" "0/0" "0/0"
## HiC_scaffold_2_33187770 "1|1" "0/0" "0/0"
## HiC_scaffold_2_33187959 "0/1" "0/0" "0/0"
## HiC_scaffold_2_41603929 "0/1" "0/0" "0/1"
## HiC_scaffold_2_52233191 "1/1" "0/1" "0/0"
## HiC_scaffold_2_52400748 "1/1" "0/1" "1/1"
## HiC_scaffold_2_52403793 "1|1" "1|1" "1/1"
## HiC_scaffold_2_52799130 NA "1/1" "1/1"
## HiC_scaffold_20_10332897 "0/1" NA "0/0"
## HiC_scaffold_20_17198418 "1|1" "0/0" "0/0"
## HiC_scaffold_20_17915398 NA NA "0/0"
## HiC_scaffold_20_18872955 "1/1" "1/1" "0/0"
## HiC_scaffold_20_19055301 "1/1" "1/1" "1/1"
## HiC_scaffold_20_19150094 "0/0" "1/1" NA
## HiC_scaffold_20_20651022 NA "0/0" "1|1"
## HiC_scaffold_20_22651296 "0/1" NA "0/1"
## HiC_scaffold_21_2009156 "0|1" "1|1" NA
## HiC_scaffold_21_2435648 "0/0" "0/0" "0/0"
## HiC_scaffold_21_7164210 "0/0" "1|1" "0/0"
## HiC_scaffold_21_9786512 "0/1" NA NA
## HiC_scaffold_21_12424922 "1/1" NA "1/1"
## HiC_scaffold_21_17966833 "1/1" NA NA
## HiC_scaffold_21_19025429 NA "1/1" "1/1"
## HiC_scaffold_21_20058318 "0/1" "0/0" "0/0"
## HiC_scaffold_21_20562855 "1/1" "0/0" "0/0"
## HiC_scaffold_21_20661860 "1|1" NA "0/1"
## HiC_scaffold_21_20895395 "0/0" NA "0/0"
## HiC_scaffold_21_21158811 "2|2" "0/0" NA
## HiC_scaffold_21_22250857 "0/1" "1/1" NA
## HiC_scaffold_21_22250866 "0/0" "0/0" "0/0"
## HiC_scaffold_21_22257737 "0|1" "1/1" "1/1"
## HiC_scaffold_21_22644667 "1|1" "0/0" "0/0"
## HiC_scaffold_21_22644673 "1|1" "0/0" "0/0"
## HiC_scaffold_21_22666888 "0/0" "1/1" "1/1"
## HiC_scaffold_21_23905416 "0/1" "0/0" "0/1"
## HiC_scaffold_21_23981651 NA "0/0" "0/0"
## HiC_scaffold_21_24287068 "1|1" "0/0" "0/0"
## HiC_scaffold_21_30798434 "0/0" "0/0" "1|1"
## HiC_scaffold_21_35006232 "1/1" NA "1/1"
## HiC_scaffold_21_35779294 "0/1" "1|1" "0/0"
## HiC_scaffold_22_124910 "0/0" "0/0" "0/0"
## HiC_scaffold_22_751023 "1/1" NA "1|1"
## HiC_scaffold_22_1042644 "0|1" "0/0" "0/0"
## HiC_scaffold_22_1044708 "0/0" NA NA
## HiC_scaffold_22_2174911 "0/0" "0/0" NA
## HiC_scaffold_22_3431122 "0/0" NA "0/0"
## HiC_scaffold_22_3446787 "0|1" "0/0" "0|1"
## HiC_scaffold_22_3451756 "1/1" NA "1/1"
## HiC_scaffold_22_3720435 "0/0" "1/1" "0/1"
## HiC_scaffold_22_4065466 NA "0/0" NA
## HiC_scaffold_22_4739889 "0/0" "0/0" NA
## HiC_scaffold_22_4918263 "0/0" "0/0" "0/0"
## HiC_scaffold_22_5750008 "1/1" "1/1" "1/1"
## HiC_scaffold_22_5769942 "1|1" NA "0|1"
## HiC_scaffold_22_28264522 "1|1" "1|1" "0/1"
## HiC_scaffold_22_28265115 "0/0" "0/0" "1/1"
## HiC_scaffold_22_29205851 NA "1/2" "1/1"
## HiC_scaffold_22_29822340 "1/1" "0/0" "1/1"
## HiC_scaffold_22_30797357 "0/1" "0|1" "0/0"
## HiC_scaffold_22_32042610 "1|1" "1|1" "0/0"
## HiC_scaffold_23_11215327 "0/0" "1/1" "0/0"
## HiC_scaffold_23_27081333 NA "0/0" "0/0"
## HiC_scaffold_23_28672255 "0/0" NA "0/0"
## HiC_scaffold_23_29218828 "1/1" "0/1" "0/1"
## HiC_scaffold_23_32528768 "0/0" "1|1" "0/0"
## HiC_scaffold_23_32669383 "0/0" NA "0/1"
## HiC_scaffold_23_33199663 "1/1" "0/0" "0/0"
## HiC_scaffold_23_33245843 "0/1" "0/0" "0/1"
## HiC_scaffold_23_40824545 "0/0" NA "1|1"
## HiC_scaffold_23_41504669 "1/1" "1/1" "0/0"
## HiC_scaffold_24_16622654 "1/1" NA "1/1"
## HiC_scaffold_24_16622681 NA "1/1" "1/1"
## HiC_scaffold_24_19851560 "1/1" "0/1" "1/1"
## HiC_scaffold_24_20590563 "1/1" "0/0" "1/1"
## HiC_scaffold_24_27745754 "0/0" "0/1" "0/1"
## HiC_scaffold_24_28763699 "1|1" "0/1" "1|1"
## HiC_scaffold_24_28763703 "1|1" "1/1" "1|1"
## HiC_scaffold_25_4135969 "1/1" "0/0" "0/0"
## HiC_scaffold_25_4201677 "0/1" "0/0" "0/0"
## HiC_scaffold_25_5872831 "0/1" NA "1/1"
## HiC_scaffold_25_6879627 "0/0" NA "1/1"
## HiC_scaffold_25_8172813 "1|1" NA "1/1"
## HiC_scaffold_25_9969507 "1|1" "0|1" "1|1"
## HiC_scaffold_25_10691336 "0/1" NA "0/0"
## HiC_scaffold_25_21286462 "0/0" "1/1" "1|1"
## HiC_scaffold_26_4086662 "0/0" NA NA
## HiC_scaffold_26_7539671 NA "1|1" "0/0"
## HiC_scaffold_26_8348511 "1/1" "0/0" "0/1"
## HiC_scaffold_26_9043748 "1|1" "0/0" "1|1"
## HiC_scaffold_26_9045655 "0/0" NA "0/0"
## HiC_scaffold_26_11253181 "0/0" "0|1" NA
## HiC_scaffold_26_17828344 "1/1" "0/0" NA
## HiC_scaffold_26_17932520 "1/1" "1/1" "0/0"
## HiC_scaffold_26_17941459 "1/1" "0/0" "0/0"
## HiC_scaffold_26_17960877 NA "1/1" "1/1"
## HiC_scaffold_26_18284041 "0/0" "0/0" "0/1"
## HiC_scaffold_26_18288701 "1|1" NA "1|1"
## HiC_scaffold_26_18294422 "0/1" "1/1" "0|0"
## HiC_scaffold_26_21307365 "1|1" "1/1" "1/1"
## HiC_scaffold_26_22159924 "0/0" "1/1" "1/1"
## HiC_scaffold_26_22161535 "1/1" NA "0/0"
## HiC_scaffold_26_24794176 "0|1" "1/1" "1/1"
## HiC_scaffold_26_28538113 "0/0" "0/1" "1|1"
## HiC_scaffold_26_29031357 "1/1" NA "1/1"
## HiC_scaffold_26_29163462 NA "0/0" "0/0"
## HiC_scaffold_26_42631018 "0/0" "1|1" "1/1"
## HiC_scaffold_26_42634814 "0/0" "1/1" NA
## HiC_scaffold_26_43483190 "0/0" "0/0" "0/0"
## HiC_scaffold_26_49955889 "0/0" "1/1" "1/1"
## HiC_scaffold_26_58342510 "0/0" "0/0" "0/0"
## HiC_scaffold_27_1496120 "0/0" "1|1" "0/0"
## HiC_scaffold_27_1947057 "0/0" "0/0" "0/0"
## HiC_scaffold_27_2359058 "0|1" "1|1" "0/0"
## HiC_scaffold_27_2699645 "0/0" "1/1" "0/1"
## HiC_scaffold_27_4425475 "0/0" "0/0" "0/0"
## HiC_scaffold_27_7539469 "1|1" NA NA
## HiC_scaffold_27_7777122 "0/0" NA "0/1"
## HiC_scaffold_27_16657070 "1/1" NA "0/0"
## HiC_scaffold_27_24539255 NA NA NA
## HiC_scaffold_27_34642359 "0/0" "1|1" NA
## HiC_scaffold_27_34647277 "0|1" "0/0" "1|1"
## HiC_scaffold_27_35380535 "0/1" "1/1" "1/1"
## HiC_scaffold_27_35383230 "0/0" "0/0" "0/0"
## HiC_scaffold_28_21261390 "0/0" NA "0|1"
## HiC_scaffold_28_24490442 "0/0" NA "1/1"
## HiC_scaffold_28_25601927 "0/0" "0/1" "1/1"
## HiC_scaffold_28_31793968 "0/1" "0/0" "0/0"
## HiC_scaffold_28_32126687 "2/2" "0/0" "0/0"
## HiC_scaffold_28_34779518 NA "1/1" "1/1"
## HiC_scaffold_28_36042491 "0|1" "1/1" "1/1"
## HiC_scaffold_28_36692361 "0/0" "0/0" "1/1"
## HiC_scaffold_28_38672993 "0/0" NA "0|1"
## HiC_scaffold_28_39640526 "1/1" "0/0" "1/1"
## HiC_scaffold_28_40169242 "0/1" "1/1" "0/0"
## HiC_scaffold_28_41059640 NA "1|1" "1|1"
## HiC_scaffold_28_42514830 "0/0" "1/1" "0/0"
## HiC_scaffold_28_42601570 "0/0" NA "0/0"
## HiC_scaffold_28_42601585 "0/0" "0/0" "1/1"
## HiC_scaffold_28_43018803 "0/0" NA "1/1"
## HiC_scaffold_28_43036165 "0/0" NA "0/0"
## HiC_scaffold_29_344317 "0/0" "1/1" "0/0"
## HiC_scaffold_29_3811176 "0/1" NA "0/1"
## HiC_scaffold_29_6073993 "1/1" NA "0/0"
## HiC_scaffold_29_6415222 "0/0" "0/0" "0/0"
## HiC_scaffold_29_8224424 NA NA "0/1"
## HiC_scaffold_29_11153624 "1/1" "0/0" "0/1"
## HiC_scaffold_29_11153712 "1/1" NA "0/0"
## HiC_scaffold_29_11167966 "0/0" "0/1" "0/1"
## HiC_scaffold_29_11491468 "0/1" NA "1/1"
## HiC_scaffold_29_12103558 "1|1" NA "1|1"
## HiC_scaffold_29_14279322 "1/1" "0/0" "0/0"
## HiC_scaffold_29_14913907 "0/0" "1|1" "1|1"
## HiC_scaffold_29_16378276 "1/1" NA NA
## HiC_scaffold_29_20635937 NA "0/0" NA
## HiC_scaffold_29_20636787 "1/1" "0/0" "0/0"
## HiC_scaffold_29_22560215 NA "0/1" "0/1"
## HiC_scaffold_29_22561144 "0/1" "1/1" "1/1"
## HiC_scaffold_29_24017849 "0/0" "0/0" "0/0"
## HiC_scaffold_29_31603590 NA "0/1" "0/0"
## HiC_scaffold_3_21670751 "0/0" "1/1" "0/0"
## HiC_scaffold_3_24747014 "0/1" "0/1" "0/1"
## HiC_scaffold_3_27861792 NA "0/0" "0/1"
## HiC_scaffold_3_28057869 NA "1/1" "0/0"
## HiC_scaffold_3_28441436 "0/1" "0/1" "0/1"
## HiC_scaffold_3_28694380 "0/0" "0/0" "1|1"
## HiC_scaffold_3_31361023 "1|1" "0/0" "0|1"
## HiC_scaffold_3_31960572 "0/0" "0/0" "1|1"
## HiC_scaffold_3_32157169 "1/1" "0/1" NA
## HiC_scaffold_3_32159152 "1/1" "0/0" "1|1"
## HiC_scaffold_3_34124237 "0/0" "1/1" "0/0"
## HiC_scaffold_30_14199802 NA "0/0" "0/0"
## HiC_scaffold_30_16052331 "0/0" "1/1" "0/0"
## HiC_scaffold_30_19914075 NA NA "1/1"
## HiC_scaffold_30_20688783 "1/1" "0/0" "0/0"
## HiC_scaffold_30_21446076 "0/0" "0/0" "0/0"
## HiC_scaffold_30_21598563 "1/1" "0/0" "1/1"
## HiC_scaffold_30_22155728 "1|1" "0/0" "0/0"
## HiC_scaffold_31_687411 "0/0" "0/0" "1/1"
## HiC_scaffold_31_3224722 "0/1" NA "0/1"
## HiC_scaffold_31_3574854 "0/0" "0/0" "1/1"
## HiC_scaffold_31_5899551 "1/1" "0/0" NA
## HiC_scaffold_31_5911491 "0/1" NA "0|1"
## HiC_scaffold_31_6297680 "0/1" "1/1" "0/0"
## HiC_scaffold_31_12394016 "1|1" NA NA
## HiC_scaffold_31_12394040 "0/0" NA "0/0"
## HiC_scaffold_31_18612650 "1/1" "0/1" "1/1"
## HiC_scaffold_32_4446859 "1/1" "1/1" "0/0"
## HiC_scaffold_32_5274796 "0/0" NA "0/0"
## HiC_scaffold_32_5275108 "0/0" "1/1" "0/0"
## HiC_scaffold_32_5282358 "1/1" "0/0" "0/1"
## HiC_scaffold_32_5450203 "1|1" NA "1|1"
## HiC_scaffold_32_44200178 "1/1" "0/0" "1/1"
## HiC_scaffold_33_638523 "0/0" "0/0" "1|1"
## HiC_scaffold_33_44489563 "0/0" "0/1" "0/0"
## HiC_scaffold_33_44489988 "0/0" NA "0/0"
## HiC_scaffold_33_47080180 "0/1" "0/0" "0/0"
## HiC_scaffold_33_47495907 "1|1" "0/0" "1/1"
## HiC_scaffold_33_51865876 "0/0" "0/1" "0/0"
## HiC_scaffold_34_1096982 "0/1" "1/1" "0/0"
## HiC_scaffold_34_6091943 "1|1" NA "0|1"
## HiC_scaffold_34_6100160 "0/0" NA "1|1"
## HiC_scaffold_34_24368584 "0/1" NA "0/0"
## HiC_scaffold_35_3233120 "1/1" NA NA
## HiC_scaffold_35_3253574 "0/0" "1/1" NA
## HiC_scaffold_35_5512296 "0/0" "0/1" "0/0"
## HiC_scaffold_35_15114788 "1/1" "0/1" "0/1"
## HiC_scaffold_35_21214090 "0/0" NA "1/1"
## HiC_scaffold_35_21462564 "0/0" "0/1" "0/0"
## HiC_scaffold_35_22746783 "0/0" "0/0" "0/1"
## HiC_scaffold_35_22747085 "0/1" "0/0" "1|1"
## HiC_scaffold_35_23059580 "0/0" "0/0" "0/0"
## HiC_scaffold_35_23158882 "1/1" NA "1/1"
## HiC_scaffold_35_23261143 "0/1" "1/1" "1/1"
## HiC_scaffold_35_24403602 "0/0" "0/0" "0/0"
## HiC_scaffold_35_24403620 "0/1" "1/1" "0/0"
## HiC_scaffold_35_24993986 "1/1" "0/0" "0/1"
## HiC_scaffold_35_24993998 NA "1|1" "0|1"
## HiC_scaffold_36_1538038 "1/1" NA "0/1"
## HiC_scaffold_36_2464728 "1/1" NA NA
## HiC_scaffold_36_5489050 "1/1" "0/0" NA
## HiC_scaffold_36_9673981 "0/1" "0/0" NA
## HiC_scaffold_36_9674127 "1/1" "1/1" "1/1"
## HiC_scaffold_36_9674756 "1/1" "1/1" "1/1"
## HiC_scaffold_36_9676329 "1/1" "1/1" "0|1"
## HiC_scaffold_36_12304516 "0/0" "0/0" "0/0"
## HiC_scaffold_36_12515555 "1|1" NA "0|1"
## HiC_scaffold_36_13092647 NA "0/0" NA
## HiC_scaffold_36_13766994 "1/1" NA NA
## HiC_scaffold_36_14567741 "0/0" "1/1" "1/1"
## HiC_scaffold_36_15530578 "1|1" NA "1|1"
## HiC_scaffold_37_679894 "1/1" "0/0" "1/1"
## HiC_scaffold_37_916693 "1|1" NA NA
## HiC_scaffold_37_928146 "0/0" "1/1" NA
## HiC_scaffold_37_1256768 NA "1|1" "1|1"
## HiC_scaffold_37_1270034 "0/0" "1/1" "1/1"
## HiC_scaffold_37_1770997 "0/0" NA "2/2"
## HiC_scaffold_37_1798298 NA "1/1" "1/1"
## HiC_scaffold_37_2010342 "1|1" "0/1" "0/0"
## HiC_scaffold_37_2141526 "0/1" NA "0/0"
## HiC_scaffold_37_3952190 "0/0" "0/0" "0|1"
## HiC_scaffold_37_3952215 "0/0" "0/0" "0|1"
## HiC_scaffold_37_9915037 "0/1" "0/0" "1/1"
## HiC_scaffold_38_5383430 "0/0" "0/1" "0/1"
## HiC_scaffold_38_5668363 "0/0" "0/0" "0/0"
## HiC_scaffold_38_5879849 "0/0" "0/0" "0/0"
## HiC_scaffold_38_5880155 "1/1" "1/1" "1/1"
## HiC_scaffold_38_10612790 "0/0" "1/1" "1/1"
## HiC_scaffold_38_11940240 "0/0" "0|1" "0/0"
## HiC_scaffold_38_12878826 "0/0" "0/0" "0/1"
## HiC_scaffold_38_12959698 "1/1" NA "1|1"
## HiC_scaffold_38_13087368 "1/1" "1/1" NA
## HiC_scaffold_38_13480648 NA "0|1" "0/0"
## HiC_scaffold_38_13965243 "1/1" NA "1/1"
## HiC_scaffold_38_14089955 "0/0" "0/1" "1/1"
## HiC_scaffold_38_14408072 "1|1" "1|1" NA
## HiC_scaffold_38_14931216 NA "1/1" "0/0"
## HiC_scaffold_38_14978356 "1|1" NA "1|1"
## HiC_scaffold_38_14978367 "1|1" NA "1|1"
## HiC_scaffold_38_15292863 "0/0" "0/0" "0/0"
## HiC_scaffold_38_15306135 "1|1" "0/0" "0/0"
## HiC_scaffold_38_16077506 "0/0" "0/0" "0/0"
## HiC_scaffold_38_16138965 "1/1" "0/1" "1/1"
## HiC_scaffold_38_16226040 "1/1" "1/1" "0/1"
## HiC_scaffold_39_1393769 "1|1" "1|1" "0/0"
## HiC_scaffold_39_2014970 "0/0" "0/1" "0/1"
## HiC_scaffold_39_2014982 "0/0" "0|1" "0|1"
## HiC_scaffold_39_2014985 "0/0" "0|1" "0|1"
## HiC_scaffold_39_2426443 NA "0/0" "0/0"
## HiC_scaffold_39_2485330 "1/1" "1/1" "0/0"
## HiC_scaffold_39_3350506 "0/0" "1|1" "1|1"
## HiC_scaffold_39_5897388 "0/0" "1|1" "0/0"
## HiC_scaffold_39_17631133 "1/1" "0/0" "1/1"
## HiC_scaffold_4_12107187 "1/1" NA "0/0"
## HiC_scaffold_4_18241670 "1|1" "0/0" "1|1"
## HiC_scaffold_4_18241723 "1|1" "1|1" "1/1"
## HiC_scaffold_4_22418566 "1|1" "1|1" "0/0"
## HiC_scaffold_4_27899990 "0/1" "0/1" "0/1"
## HiC_scaffold_4_35575118 "0/0" "0|1" "0|1"
## HiC_scaffold_4_38000967 "1/1" NA "0/1"
## HiC_scaffold_4_50654021 "0/0" "0/0" "0/0"
## HiC_scaffold_40_2243415 "1/1" "1/1" "0/0"
## HiC_scaffold_40_3000572 "0/0" "0/0" "0/1"
## HiC_scaffold_40_3014177 "1|1" "1/1" "1/1"
## HiC_scaffold_40_3027900 "1/1" NA "0/1"
## HiC_scaffold_40_3143834 "0/0" "1/1" "0/0"
## HiC_scaffold_40_3843942 "0/0" "0/0" "0/0"
## HiC_scaffold_40_3847620 "1|1" "0/0" "1|1"
## HiC_scaffold_40_3891007 "0/0" NA "0/0"
## HiC_scaffold_40_3920667 "1|1" NA "1/1"
## HiC_scaffold_40_4177963 "0/0" NA "0/0"
## HiC_scaffold_40_4819107 "0/0" NA "1/1"
## HiC_scaffold_40_4819834 "1/1" "1|1" "0|1"
## HiC_scaffold_40_5788271 "0/0" NA "0/0"
## HiC_scaffold_40_5965269 "0/0" "1|1" "0/0"
## HiC_scaffold_40_6204154 "0/1" NA "0/1"
## HiC_scaffold_40_8387917 "0/1" "1/1" "1/1"
## HiC_scaffold_41_3235384 "0/0" NA "0/1"
## HiC_scaffold_41_3583000 "0/0" "0/0" "0/1"
## HiC_scaffold_41_5334504 NA "1/1" "1|1"
## HiC_scaffold_41_5387631 "1|1" "1|1" "0/1"
## HiC_scaffold_41_6423426 NA "0/0" "0/0"
## HiC_scaffold_41_14359947 NA NA "0/1"
## HiC_scaffold_41_24007593 "0/1" "0/0" "0|1"
## HiC_scaffold_41_26225447 "0/0" "1|1" "0/0"
## HiC_scaffold_41_28626484 "0/0" "1/1" "0/0"
## HiC_scaffold_41_28660620 "0|1" "1|1" "1|1"
## HiC_scaffold_41_31007688 "1/1" "1/1" "0/0"
## HiC_scaffold_42_1131084 "1/1" NA "1/1"
## HiC_scaffold_42_1818523 "1/1" "0/0" "0/0"
## HiC_scaffold_42_2165002 "0/0" "0/0" "0/0"
## HiC_scaffold_42_2711332 "0/0" NA "1|1"
## HiC_scaffold_42_6142699 "1/1" NA "0/0"
## HiC_scaffold_42_6744976 "1/1" "1/1" "1/1"
## HiC_scaffold_42_8066919 "1|1" NA "0/0"
## HiC_scaffold_42_8068292 "1|1" "0/0" NA
## HiC_scaffold_42_12487888 "0/0" "1|1" "1|1"
## HiC_scaffold_42_41366687 "1/1" NA "1/1"
## HiC_scaffold_42_47313337 "0/0" "0/0" "0/0"
## HiC_scaffold_42_47313338 "0/0" "0/0" "0/0"
## HiC_scaffold_42_50784971 "1|1" NA "0/0"
## HiC_scaffold_42_50784977 "1|1" NA "0/0"
## HiC_scaffold_42_50784981 "0/0" "0/0" "1/1"
## HiC_scaffold_42_51916989 "1/1" "1/1" "1/1"
## HiC_scaffold_43_3842003 "0/1" NA "1/1"
## HiC_scaffold_43_14140861 "0/0" NA "0/1"
## HiC_scaffold_43_15053605 "1/1" "1/1" "1/1"
## HiC_scaffold_43_17289945 "1|1" "0/0" "0/0"
## HiC_scaffold_43_29967704 "1/1" NA NA
## HiC_scaffold_43_35745831 "0/0" "0/1" "1|1"
## HiC_scaffold_43_37627949 "0/1" "0/0" "0/0"
## HiC_scaffold_43_37628126 "1/1" "0/0" "0/0"
## HiC_scaffold_43_44017118 NA "0/0" "0/0"
## HiC_scaffold_43_55124138 "0/0" "0/0" "0/1"
## HiC_scaffold_43_60107326 "1|1" NA "1|1"
## HiC_scaffold_43_61359386 "1/1" NA "1/1"
## HiC_scaffold_43_61702593 "0/0" "0/0" "0|1"
## HiC_scaffold_43_61702606 "0/0" "0/0" "0|1"
## HiC_scaffold_43_61702721 "1|1" "1|1" "0/0"
## HiC_scaffold_43_61702738 "0/0" "0/0" "0/1"
## HiC_scaffold_43_62511703 "0/0" "1|1" "1|1"
## HiC_scaffold_43_64069457 "1/1" "1/1" "1/1"
## HiC_scaffold_43_64577269 "1/1" "1/1" "1/1"
## HiC_scaffold_44_1920144 "0/0" "1|1" "0/0"
## HiC_scaffold_44_2148035 "0/0" NA "0/0"
## HiC_scaffold_44_2568167 NA NA "0/0"
## HiC_scaffold_45_4180070 "1/1" "1/1" "1/1"
## HiC_scaffold_45_4797754 "0/0" "0/2" NA
## HiC_scaffold_45_5911123 NA NA "0/0"
## HiC_scaffold_45_6958990 "1/1" "0/0" "0/0"
## HiC_scaffold_45_8516216 "1|1" "1|1" "0/0"
## HiC_scaffold_45_10191213 "1/1" "1/1" "1/1"
## HiC_scaffold_45_12005885 "0/1" "0/1" NA
## HiC_scaffold_45_12006766 "0/0" "0/0" "0/0"
## HiC_scaffold_45_24736172 "0/0" NA "0/0"
## HiC_scaffold_45_24739830 NA "1|1" "0/0"
## HiC_scaffold_46_9691567 NA "0/0" "0/1"
## HiC_scaffold_46_17380257 "1/1" NA "0/0"
## HiC_scaffold_46_18387147 "0|1" NA "0/0"
## HiC_scaffold_46_37092355 "0/0" "0|1" "0/0"
## HiC_scaffold_46_39183624 "1/1" "1/1" "0|1"
## HiC_scaffold_46_39390547 "0|1" "1|1" "0/1"
## HiC_scaffold_46_42964941 "1|1" "1|1" "1|1"
## HiC_scaffold_46_42986653 "0/0" "0/0" "1/1"
## HiC_scaffold_46_52074364 "1|1" NA "1|1"
## HiC_scaffold_46_54255667 "1/1" NA "1/1"
## HiC_scaffold_47_3750532 "0/0" NA "0/0"
## HiC_scaffold_47_3751345 "0/0" "1/1" NA
## HiC_scaffold_47_15400639 "1|1" "0/0" "0/0"
## HiC_scaffold_47_24072414 NA NA "1/1"
## HiC_scaffold_47_25273825 "0/0" NA "0|1"
## HiC_scaffold_48_8752752 "0/0" "0/0" "0/0"
## HiC_scaffold_48_10765920 "0/0" "0/1" "0/0"
## HiC_scaffold_48_16077918 "0|1" NA "0/0"
## HiC_scaffold_48_16077940 "1/1" "0/0" "0/1"
## HiC_scaffold_48_16411609 "1/1" "1/1" "0/1"
## HiC_scaffold_48_19972580 NA "0/0" "0/1"
## HiC_scaffold_48_23493079 "0/0" "0/0" "0/0"
## HiC_scaffold_48_23597210 "1|1" "0/0" "1|1"
## HiC_scaffold_48_24478493 "0/1" "0/0" "0/0"
## HiC_scaffold_48_24881148 "0/1" NA "0/1"
## HiC_scaffold_48_25865723 "0/1" "1/1" NA
## HiC_scaffold_48_25984068 "0/0" "0|1" "0/0"
## HiC_scaffold_48_25989079 "0/0" NA "1|1"
## HiC_scaffold_48_30601375 "1|1" "0/0" "1|1"
## HiC_scaffold_48_31662115 "1/1" "1/1" "1/1"
## HiC_scaffold_48_41971562 NA "1/1" "1/1"
## HiC_scaffold_49_3392801 NA "0/0" NA
## HiC_scaffold_49_6101692 "1/1" "1/1" "1/1"
## HiC_scaffold_49_7996315 "0/0" "0/0" "0/0"
## HiC_scaffold_49_9470474 "1/1" NA "1/1"
## HiC_scaffold_49_9886007 "1/1" NA "0/0"
## HiC_scaffold_49_12592113 "0/0" "0/1" "0/0"
## HiC_scaffold_49_12741575 "0/0" "0/0" "1/1"
## HiC_scaffold_49_15135019 "1/1" "1/1" "1/1"
## HiC_scaffold_49_25906219 "0/1" "0/0" NA
## HiC_scaffold_49_26614199 "0/1" "0/0" "1/1"
## HiC_scaffold_49_26655554 "0/1" "0|1" "0/0"
## HiC_scaffold_49_37568341 "1/1" "0/0" "1/1"
## HiC_scaffold_49_37568353 "1/1" "0/0" "1/1"
## HiC_scaffold_49_40002255 "1|1" "0/0" NA
## HiC_scaffold_49_40003229 "0/0" "1|1" "0/0"
## HiC_scaffold_49_42966376 "0/0" "0/0" "1/1"
## HiC_scaffold_5_801252 NA "1/1" "0/0"
## HiC_scaffold_5_1446603 "1|1" "0/0" "0/0"
## HiC_scaffold_5_1446611 "1|1" "0/0" "0/0"
## HiC_scaffold_5_1530759 "1/1" NA "1/1"
## HiC_scaffold_5_1539275 "0/0" "0/0" "0/0"
## HiC_scaffold_5_1789576 "0/0" "1|1" "0/0"
## HiC_scaffold_5_1808197 "0/1" NA "1/1"
## HiC_scaffold_5_1808204 "0/0" NA "0/0"
## HiC_scaffold_5_1943895 "1|1" "1|1" "1|1"
## HiC_scaffold_5_1944469 NA "1/1" "0/1"
## HiC_scaffold_5_2857283 "0/0" NA "0/0"
## HiC_scaffold_5_4061378 "1|1" "1/1" "1|1"
## HiC_scaffold_5_4340647 "0/0" "0/0" "0/0"
## HiC_scaffold_5_4435246 "1/1" "1/1" "1/1"
## HiC_scaffold_5_8868783 "0/0" "0/0" "1/1"
## HiC_scaffold_50_4315969 "1/1" "0/0" "0/1"
## HiC_scaffold_50_11652296 "1/1" "1/1" "0/1"
## HiC_scaffold_50_11657309 "1/1" NA "0/0"
## HiC_scaffold_50_15521027 "0/1" "0/0" "0/1"
## HiC_scaffold_50_21050962 "0/0" "0/0" NA
## HiC_scaffold_50_23686202 "0|1" NA "0|1"
## HiC_scaffold_50_27393462 "0/0" NA "1|1"
## HiC_scaffold_50_42586883 "0/0" "0/0" "0/0"
## HiC_scaffold_50_45087211 "0/0" "1/1" "1/1"
## HiC_scaffold_50_49796550 "1/1" NA "1/1"
## HiC_scaffold_50_54383367 "0/0" "0/1" "0/0"
## HiC_scaffold_50_63318678 "0/0" "1/1" "1/1"
## HiC_scaffold_51_3521000 "0/0" "0/0" "0/0"
## HiC_scaffold_51_4681905 "0/0" "1/1" "1/1"
## HiC_scaffold_51_6305599 "0/0" "0/0" "0/1"
## HiC_scaffold_51_8530818 "1|1" "1|1" "0/0"
## HiC_scaffold_51_11653312 "0/0" "1/1" NA
## HiC_scaffold_51_13138547 "0/0" "1/1" "0/1"
## HiC_scaffold_51_14457091 "0/0" "0/0" "0/0"
## HiC_scaffold_51_15512668 "0/1" NA "0/0"
## HiC_scaffold_51_17816346 NA NA "1/1"
## HiC_scaffold_51_19997934 "0/0" NA "1|1"
## HiC_scaffold_51_19997936 "0/0" NA "1|1"
## HiC_scaffold_51_20870773 NA "0/0" "0/1"
## HiC_scaffold_51_26660104 "0/0" "1|1" "0/0"
## HiC_scaffold_51_40727521 "1|1" "0/0" "1|1"
## HiC_scaffold_51_40892841 "0/0" "0/1" "0/0"
## HiC_scaffold_51_41717519 NA "1/1" "1/1"
## HiC_scaffold_51_42547638 NA "1/1" "1/1"
## HiC_scaffold_52_3335804 NA NA "1/1"
## HiC_scaffold_52_4149130 "0/0" "1/1" "0/0"
## HiC_scaffold_52_6893679 "1|1" NA "1|1"
## HiC_scaffold_52_13155416 "1/1" "1/1" "1/1"
## HiC_scaffold_52_13155437 "1|1" "1|1" "1|1"
## HiC_scaffold_52_13155442 "1|1" "1|1" "1|1"
## HiC_scaffold_52_14885688 "0/1" "0/0" "0/0"
## HiC_scaffold_52_14895078 "1/1" NA "0/0"
## HiC_scaffold_52_15141791 "1/1" NA "1/1"
## HiC_scaffold_52_15743051 "0/0" "0/0" "1|1"
## HiC_scaffold_52_15760201 NA NA "0/0"
## HiC_scaffold_52_15834589 "0/1" "0/0" "0/0"
## HiC_scaffold_52_15841769 "0/0" "1/1" "0/0"
## HiC_scaffold_52_15862421 NA "0/0" "0/0"
## HiC_scaffold_52_15970970 "0/0" "0/0" "0/0"
## HiC_scaffold_52_16275237 "1/1" "0/0" "1/1"
## HiC_scaffold_52_16275240 "0/0" "1|1" "0/0"
## HiC_scaffold_52_16275290 "0/0" NA "0/0"
## HiC_scaffold_52_16524164 "0/0" "1|1" "0/0"
## HiC_scaffold_52_16524572 "1/1" NA "1/1"
## HiC_scaffold_52_16525647 "0/0" NA "0/0"
## HiC_scaffold_52_16637047 "1/1" NA "0/0"
## HiC_scaffold_52_17202127 "0/0" "0/0" "1|1"
## HiC_scaffold_52_17207724 "0/0" "1/1" NA
## HiC_scaffold_52_17508820 "0/1" NA "0/0"
## HiC_scaffold_52_17547593 "0/1" "0/0" "0/0"
## HiC_scaffold_52_17551239 "0/0" "0/0" "0/1"
## HiC_scaffold_52_17560696 "0/0" "1|1" "1|1"
## HiC_scaffold_52_17560699 "0/0" "1|1" "1|1"
## HiC_scaffold_52_17741250 "0/1" NA "1/1"
## HiC_scaffold_52_17742260 "1|1" NA "0/0"
## HiC_scaffold_52_18340578 "0/1" "0/1" "0/0"
## HiC_scaffold_52_18415911 NA "1/1" "1/1"
## HiC_scaffold_52_22189517 NA "1/1" "0/0"
## HiC_scaffold_52_22526592 "0/1" "0/0" NA
## HiC_scaffold_52_26393471 "1/1" "0/0" "0/0"
## HiC_scaffold_52_26799380 NA "1/1" "0/1"
## HiC_scaffold_52_31871931 NA "0/0" "0/0"
## HiC_scaffold_52_31874283 "1|1" "1|1" "0|1"
## HiC_scaffold_52_31874287 "1|1" "1|1" "0|1"
## HiC_scaffold_52_32161053 "1|1" "1|1" "1|1"
## HiC_scaffold_52_33165557 "0/0" "1/1" "0/0"
## HiC_scaffold_52_33897620 NA NA "1/1"
## HiC_scaffold_52_34763156 NA "0/0" "0/0"
## HiC_scaffold_52_34763171 "0/0" NA "1/1"
## HiC_scaffold_52_35174755 "0/0" "0/0" "0/1"
## HiC_scaffold_52_35608453 "1/1" NA NA
## HiC_scaffold_52_35608470 "1|1" NA NA
## HiC_scaffold_52_39464728 "0/0" NA "1|1"
## HiC_scaffold_52_42141354 "0/0" NA "1|1"
## HiC_scaffold_52_44675725 NA NA "1/1"
## HiC_scaffold_52_49935920 "1/1" NA "0/1"
## HiC_scaffold_53_21789524 "0/1" "0/0" "1/1"
## HiC_scaffold_53_25168042 "0|1" "0/0" "0/0"
## HiC_scaffold_53_26398989 "0/0" "0/0" "0/0"
## HiC_scaffold_53_26398992 "0/0" "0/0" "0/0"
## HiC_scaffold_53_26398994 "0/0" "0/0" "0/0"
## HiC_scaffold_53_26549665 "1/1" NA "1/1"
## HiC_scaffold_53_29227676 NA "0|1" "1|1"
## HiC_scaffold_53_31250349 "1/1" NA NA
## HiC_scaffold_54_530581 "1|1" NA NA
## HiC_scaffold_54_794095 "1|1" "1|1" "1|1"
## HiC_scaffold_54_1171109 "0|1" "0/0" "0/0"
## HiC_scaffold_54_1378956 "0/0" "0/0" "1/1"
## HiC_scaffold_54_1380539 "1|1" "1/1" "1/1"
## HiC_scaffold_54_3045015 NA "1/1" "1/1"
## HiC_scaffold_54_3185987 "1/1" "0/1" "1/1"
## HiC_scaffold_54_4401098 "1|1" "0/0" "0/0"
## HiC_scaffold_54_5595903 "0/0" "0/1" "0/0"
## HiC_scaffold_54_5595921 "0/0" "1/1" "0/0"
## HiC_scaffold_54_5595928 "1|1" "0/0" "1|1"
## HiC_scaffold_54_5595949 "0/0" "0/0" "0/0"
## HiC_scaffold_54_6649662 "0/1" NA "1/1"
## HiC_scaffold_54_8036734 "0|1" NA NA
## HiC_scaffold_54_9206614 "0/0" "0/0" "0/0"
## HiC_scaffold_54_35913192 "0/1" "0/0" NA
## HiC_scaffold_54_35913282 "0/0" "0/1" "0/0"
## HiC_scaffold_54_35913283 "0/0" "0/1" "1|1"
## HiC_scaffold_55_1260491 "1/1" "1/1" "1/1"
## HiC_scaffold_55_3254027 "0/0" "1/1" "0/1"
## HiC_scaffold_55_3281985 NA "0/0" "1|1"
## HiC_scaffold_55_5409544 "0/1" NA NA
## HiC_scaffold_55_5411094 "1|1" "1|1" "0/0"
## HiC_scaffold_55_5411115 "1|1" "1|1" "0/1"
## HiC_scaffold_55_18121799 "1/1" "1/1" NA
## HiC_scaffold_55_19605809 "0|1" "0/0" "1|1"
## HiC_scaffold_55_19605817 "0|1" "1|1" "1|1"
## HiC_scaffold_55_19605821 "1/1" "1|1" "1|1"
## HiC_scaffold_55_20195204 NA "1/1" "1/1"
## HiC_scaffold_55_20886967 "0/1" "1/1" "0/0"
## HiC_scaffold_55_23222937 "1/1" "1/1" NA
## HiC_scaffold_55_23626331 NA "0/0" "0/0"
## HiC_scaffold_55_24539590 "0/0" "1/1" "1/1"
## HiC_scaffold_55_24585939 "0/0" "0/0" "0/1"
## HiC_scaffold_55_34174151 NA "1/1" "0/0"
## HiC_scaffold_56_17874332 "1/1" "0/1" "1/1"
## HiC_scaffold_56_18635259 "0/0" "0/0" "1|1"
## HiC_scaffold_56_23654344 "0/0" "0/0" "1/1"
## HiC_scaffold_56_35850533 "0/0" "0/1" "0/0"
## HiC_scaffold_56_35850539 "0/0" "0/0" "1/1"
## HiC_scaffold_56_40813556 "0/0" NA "0/0"
## HiC_scaffold_56_53211633 "1/1" "0|1" NA
## HiC_scaffold_56_60070829 "1/1" "1/1" "1/1"
## HiC_scaffold_56_73286017 "0/1" NA "0|1"
## HiC_scaffold_56_73829442 "0/0" "0/0" "0|1"
## HiC_scaffold_56_73829443 "0/0" "0/0" "0|1"
## HiC_scaffold_56_76060304 "0/0" NA "0/0"
## HiC_scaffold_57_25306408 "0/0" "0/0" NA
## HiC_scaffold_57_29222385 "0/0" "0/0" "0/0"
## HiC_scaffold_57_29592432 "1/1" "0/0" "0/0"
## HiC_scaffold_57_31472698 NA "1|1" "1|1"
## HiC_scaffold_57_32371742 "0/0" "0/0" "0/0"
## HiC_scaffold_57_36495072 "0/0" "0/0" "1/1"
## HiC_scaffold_57_37286264 "0/1" "0/0" "0/0"
## HiC_scaffold_57_38537415 NA "1|1" NA
## HiC_scaffold_57_45438854 "1/1" "1/2" "1|1"
## HiC_scaffold_57_52856874 NA "0/0" "0/0"
## HiC_scaffold_57_53575355 "0/0" "0/0" "1/1"
## HiC_scaffold_57_55856783 "0/0" "1/1" "0/0"
## HiC_scaffold_58_1362614 NA "0/0" NA
## HiC_scaffold_58_1432845 "1/1" "1/1" "1/1"
## HiC_scaffold_58_1541720 NA NA "0/0"
## HiC_scaffold_58_2777120 "0/0" "0/1" "0/0"
## HiC_scaffold_58_2973169 NA NA "1/1"
## HiC_scaffold_58_3243043 "0/0" "0/0" "0/0"
## HiC_scaffold_58_4035282 "0/1" "1/1" "0/0"
## HiC_scaffold_58_5442157 "1|1" "0/0" "0/0"
## HiC_scaffold_58_8004631 "0/0" "1/1" "0/0"
## HiC_scaffold_58_8058998 "0|1" "0/0" "0/1"
## HiC_scaffold_58_8932837 "1/1" NA NA
## HiC_scaffold_58_14814944 "0/0" "0/0" "0/0"
## HiC_scaffold_58_15639988 NA "0/0" "1/1"
## HiC_scaffold_58_15707198 "1/1" NA "0/0"
## HiC_scaffold_58_15707258 "1/1" "0/0" "0/0"
## HiC_scaffold_58_15710623 "0/0" "0/0" "0/1"
## HiC_scaffold_58_19155063 "1|1" "0/0" "0/0"
## HiC_scaffold_58_20224050 "0/0" "1/1" "0/0"
## HiC_scaffold_58_38475355 "1/1" "1/1" "1/1"
## HiC_scaffold_59_3979055 "0/0" "0/0" "0/1"
## HiC_scaffold_59_5071810 "0/0" "1|1" "1|1"
## HiC_scaffold_59_5349936 "0/1" "0/0" NA
## HiC_scaffold_59_5350114 "0/1" "0/0" "1/1"
## HiC_scaffold_59_7738302 NA "1/1" "1/1"
## HiC_scaffold_59_7738351 "0/1" "1/1" "1/1"
## HiC_scaffold_59_7958561 "0/0" "1|1" "0/0"
## HiC_scaffold_59_9273798 "1/1" NA "1/1"
## HiC_scaffold_59_50928099 "0/0" NA NA
## HiC_scaffold_59_52960060 "0/0" NA "0/1"
## HiC_scaffold_6_10569023 "1/1" NA "0/1"
## HiC_scaffold_6_10711445 "0/1" "0/0" "0/0"
## HiC_scaffold_6_13209200 "0/0" "0|1" "0/1"
## HiC_scaffold_6_13213107 "0/0" "0/0" "0/1"
## HiC_scaffold_6_13311684 "0/0" "1/1" "1|1"
## HiC_scaffold_6_15670783 "1|1" NA "1|1"
## HiC_scaffold_6_19111232 "0/0" "0/0" NA
## HiC_scaffold_6_32805498 "0/0" NA "0/0"
## HiC_scaffold_6_38793174 NA "1|1" "0/1"
## HiC_scaffold_6_41092101 "0/0" "1/1" "1|1"
## HiC_scaffold_6_41342933 "1/1" "1/1" "0/1"
## HiC_scaffold_6_47594508 "0/0" "0/0" "0/0"
## HiC_scaffold_60_70878 NA "1|1" "1|1"
## HiC_scaffold_60_99549 NA "0/0" "0/0"
## HiC_scaffold_60_201823 "1/1" "0/1" "1/1"
## HiC_scaffold_60_712969 "1|1" "1|1" "1|1"
## HiC_scaffold_60_744783 "1/1" NA "1|1"
## HiC_scaffold_60_744788 "0/0" NA "0/0"
## HiC_scaffold_60_22142128 "0/0" "0|1" NA
## HiC_scaffold_60_27599770 NA "0/1" "0/0"
## HiC_scaffold_60_30608878 "1|1" NA NA
## HiC_scaffold_60_32657324 NA NA "0/0"
## HiC_scaffold_60_32672580 "0|1" NA "1/1"
## HiC_scaffold_60_38856893 "0/0" "0/0" "0/1"
## HiC_scaffold_60_39028335 "1/1" "1/1" "1/1"
## HiC_scaffold_60_40296869 "0/0" "0/0" "0/1"
## HiC_scaffold_60_42775723 "1/1" "0/0" "0/0"
## HiC_scaffold_60_44687906 "0/0" "0/1" "0/0"
## HiC_scaffold_60_44804601 "0/0" NA "0/0"
## HiC_scaffold_60_53696867 NA "0|1" "1|1"
## HiC_scaffold_60_53696868 NA "0|1" "1|1"
## HiC_scaffold_60_60651515 "0/0" "0/0" "0/1"
## HiC_scaffold_60_70678462 NA NA "1/1"
## HiC_scaffold_61_2205328 "1/1" NA "1/1"
## HiC_scaffold_61_2491706 NA NA NA
## HiC_scaffold_61_4009916 "0/0" NA "0/0"
## HiC_scaffold_61_4062917 "0/0" "0/0" "0/0"
## HiC_scaffold_61_4122763 "1|1" "1|1" NA
## HiC_scaffold_61_4216461 "1/1" NA "1/1"
## HiC_scaffold_61_4325053 NA NA "1/1"
## HiC_scaffold_61_9004838 "1|1" NA "1|1"
## HiC_scaffold_61_14635083 "0|1" "0/1" "0|1"
## HiC_scaffold_62_1128608 "1/1" "1/1" NA
## HiC_scaffold_62_11335200 "0/0" "0|1" "0|0"
## HiC_scaffold_62_18828476 NA "1/1" "1/1"
## HiC_scaffold_62_21548870 "1|1" NA "1|1"
## HiC_scaffold_62_23103274 "0/0" "1/1" "1/1"
## HiC_scaffold_62_25793456 "1/1" "0/0" "1/1"
## HiC_scaffold_62_25887474 "0/0" "0/0" "0/0"
## HiC_scaffold_62_28516096 "0/0" NA "0/0"
## HiC_scaffold_62_28516099 "0/0" NA "0/0"
## HiC_scaffold_62_28818725 "1|1" "1|1" "0|1"
## HiC_scaffold_62_28818729 "0/0" "0/0" "0/1"
## HiC_scaffold_62_45207353 "0/0" NA "1/1"
## HiC_scaffold_63_3092269 "1/1" "1/1" "1/1"
## HiC_scaffold_63_3977940 "0/0" "0/0" "0/0"
## HiC_scaffold_63_4084937 "1/1" NA "0/0"
## HiC_scaffold_63_4196326 "1|1" "0/0" "0/1"
## HiC_scaffold_63_6262453 "0/0" NA "0/1"
## HiC_scaffold_63_6350204 "1|1" NA "1/1"
## HiC_scaffold_63_6458794 "0|1" NA "0|1"
## HiC_scaffold_64_9162978 "0/0" "0/0" "1/1"
## HiC_scaffold_64_16876561 "1|1" "0|1" "0|1"
## HiC_scaffold_64_17543009 "1/1" "0/0" "0/0"
## HiC_scaffold_64_18925356 "1/1" NA "1/1"
## HiC_scaffold_64_19133050 "1|1" "0/0" "0/0"
## HiC_scaffold_64_19627769 "1|1" "1|1" "0/0"
## HiC_scaffold_64_20477250 "1/1" "0/0" "1/1"
## HiC_scaffold_64_22816677 "0/0" NA "0/1"
## HiC_scaffold_64_22954654 "1|1" "1|1" NA
## HiC_scaffold_64_22954658 "1|1" "1|1" NA
## HiC_scaffold_64_22954682 "1/1" "1/1" "0/1"
## HiC_scaffold_65_6829971 "0/0" "0/0" "0/0"
## HiC_scaffold_65_8071102 "0/0" "0/0" "0/0"
## HiC_scaffold_65_9023979 "0/0" NA "0/0"
## HiC_scaffold_65_9839671 "0/0" "0/1" "0/0"
## HiC_scaffold_65_10404778 "0/0" NA "0|1"
## HiC_scaffold_65_11327791 "0/0" "1/1" "1/1"
## HiC_scaffold_65_11332104 "1/1" "0/0" NA
## HiC_scaffold_65_34823822 "0/0" "0/0" "0/0"
## HiC_scaffold_65_51418017 "1/1" "1|1" "1/1"
## HiC_scaffold_65_54053979 NA "1|1" "1|1"
## HiC_scaffold_65_57110875 "1|1" "0/0" "1|1"
## HiC_scaffold_66_15615363 "0/1" "0/0" "1|1"
## HiC_scaffold_66_15672090 NA "0/0" "0/0"
## HiC_scaffold_66_17903445 "0/0" NA "1|1"
## HiC_scaffold_66_18298629 "0/0" "1|1" "0/0"
## HiC_scaffold_66_19730676 NA NA "0/0"
## HiC_scaffold_66_23688768 NA "0/0" "0/0"
## HiC_scaffold_66_26614535 NA "0/0" "0/0"
## HiC_scaffold_66_27445665 "0/0" "1|1" "1/1"
## HiC_scaffold_66_29457165 NA "0/0" "1/1"
## HiC_scaffold_66_29457180 "0/0" NA "1/1"
## HiC_scaffold_66_30116287 "1|1" NA "1|1"
## HiC_scaffold_66_31603503 "0/0" "0/0" "0/0"
## HiC_scaffold_66_33261460 "0/1" "0/0" "0/0"
## HiC_scaffold_66_34138981 "1/1" "0/1" NA
## HiC_scaffold_66_34139020 "0/0" "0/0" NA
## HiC_scaffold_66_34142862 "1/1" "0/0" "0/0"
## HiC_scaffold_67_1404390 NA "0/0" "0/1"
## HiC_scaffold_67_28493665 "0/0" "1|1" "0/0"
## HiC_scaffold_67_30243885 "0/0" "0/0" "1|1"
## HiC_scaffold_67_31511806 "0/0" "0/0" "0|1"
## HiC_scaffold_67_34638092 "0/1" NA "1/1"
## HiC_scaffold_67_37534720 "0/0" "0/0" "0/0"
## HiC_scaffold_67_39679546 "1/1" NA "1/1"
## HiC_scaffold_67_39854918 "0/0" "1|1" "0/0"
## HiC_scaffold_67_39860738 "1/1" "0/1" "0/1"
## HiC_scaffold_67_40331656 "0/0" "0/0" "1/1"
## HiC_scaffold_67_40824747 "1|1" NA NA
## HiC_scaffold_68_3438132 "0/0" "1|1" "0/0"
## HiC_scaffold_68_3438133 "0/0" "1|1" "0/0"
## HiC_scaffold_68_11206902 NA "0/1" "1/1"
## HiC_scaffold_68_32770607 "1|1" "1|1" "1|1"
## HiC_scaffold_68_34016823 "2|2" NA "0/0"
## HiC_scaffold_68_34020019 "0/0" NA "1/1"
## HiC_scaffold_68_40296057 "0/0" NA "0/0"
## HiC_scaffold_68_40296059 "0/0" NA "0/0"
## HiC_scaffold_68_65001879 "1/1" NA "1/1"
## HiC_scaffold_69_23311147 "0/0" NA "0|2"
## HiC_scaffold_69_27351303 "0/0" "0/0" NA
## HiC_scaffold_69_29437208 "1/1" NA "1|1"
## HiC_scaffold_69_33699381 "1|1" NA NA
## HiC_scaffold_69_40194698 "1/1" NA NA
## HiC_scaffold_69_48273575 "1/1" "1/1" "0/1"
## HiC_scaffold_69_48348026 "0|1" "1/1" "0|1"
## HiC_scaffold_69_48348034 "0|1" "0/0" "0/1"
## HiC_scaffold_69_49563252 "0/0" "1/1" "0/0"
## HiC_scaffold_69_49593952 "0/0" NA "1/1"
## HiC_scaffold_69_49859037 "1|1" NA "0/0"
## HiC_scaffold_69_51271238 "0/0" "0/1" "0/0"
## HiC_scaffold_69_51529836 "0/0" "0/1" "0/0"
## HiC_scaffold_69_57313650 "0/0" "1|1" "1/1"
## HiC_scaffold_69_57359194 "0/0" "1/1" "1/1"
## HiC_scaffold_6951_523650 "1/1" "1/1" "1/1"
## HiC_scaffold_6951_897126 "0/0" "0/0" "1|1"
## HiC_scaffold_6951_1134482 "0/0" "1|1" "1|1"
## HiC_scaffold_6951_2484960 "0/0" NA "0/0"
## HiC_scaffold_6951_3301273 "0/0" "0/0" "1|1"
## HiC_scaffold_6951_3314609 "1/1" "1/1" "1/1"
## HiC_scaffold_6951_3945993 "1|1" "1|1" "0/0"
## HiC_scaffold_6958_218293 "0/0" "0/0" "0/0"
## HiC_scaffold_6958_449143 NA "0/0" "1/1"
## HiC_scaffold_7_351023 "0/0" NA "0/0"
## HiC_scaffold_7_488024 "0/0" "0/0" "1|1"
## HiC_scaffold_7_492663 "0/0" "0/1" NA
## HiC_scaffold_7_693567 "1|1" "1|1" "0/0"
## HiC_scaffold_7_2379128 NA NA "0/1"
## HiC_scaffold_7_3087721 "0/1" "0/1" "1/1"
## HiC_scaffold_7_3394880 "0/0" "0/0" "1/1"
## HiC_scaffold_7_22247106 "1|1" "0/0" "0/1"
## HiC_scaffold_70_4632611 "0/0" "1|1" "1|1"
## HiC_scaffold_70_14042778 "1/1" "0/0" "0/0"
## HiC_scaffold_71_410844 NA "0/0" "0/0"
## HiC_scaffold_71_1753451 "0/0" "1/1" NA
## HiC_scaffold_71_2283682 "0/0" "0/0" NA
## HiC_scaffold_71_3439685 "0/0" "0/0" "0/0"
## HiC_scaffold_71_17850462 "1/1" NA "0/0"
## HiC_scaffold_71_20588314 "0/0" "1/1" "0/1"
## HiC_scaffold_71_25465351 "1|1" NA "0/0"
## HiC_scaffold_71_25465352 "1|1" NA "0/0"
## HiC_scaffold_71_26356062 NA NA "0/1"
## HiC_scaffold_72_11785096 NA NA "1/1"
## HiC_scaffold_72_17285854 "0/0" "1/1" "0/1"
## HiC_scaffold_72_23704999 "0/0" "0/0" "0/0"
## HiC_scaffold_72_24465318 "0/0" "0|1" "0|1"
## HiC_scaffold_72_30457277 "0/0" "0/0" NA
## HiC_scaffold_72_32068649 "0/0" NA "1/1"
## HiC_scaffold_72_35058295 "0/0" "0/0" "0/0"
## HiC_scaffold_72_36024997 "0/1" "1|1" "0/0"
## HiC_scaffold_72_37135067 NA "0/0" "0|1"
## HiC_scaffold_72_38410141 "0/0" NA "0/0"
## HiC_scaffold_72_38448056 "1|1" "1|1" "1|1"
## HiC_scaffold_72_41412511 "0/1" "0/0" NA
## HiC_scaffold_73_2192629 "0/0" "1|1" "0/0"
## HiC_scaffold_73_2920208 "0/0" "0/0" "1|1"
## HiC_scaffold_73_4522493 NA "1|1" NA
## HiC_scaffold_73_4748625 "0/0" NA "0/0"
## HiC_scaffold_73_5839336 "1/1" "1/1" "1/1"
## HiC_scaffold_73_9338582 "1/1" "0/0" NA
## HiC_scaffold_73_27393859 "0/0" NA "0/0"
## HiC_scaffold_74_14235619 NA "1/1" "1/1"
## HiC_scaffold_74_14515598 "1/1" "1/1" "1/1"
## HiC_scaffold_74_15116121 "0/0" NA "0/1"
## HiC_scaffold_74_17233613 "0/0" NA "1/1"
## HiC_scaffold_74_17725340 "0/0" "1|1" "0|1"
## HiC_scaffold_74_18418135 "1|1" NA "0/0"
## HiC_scaffold_74_18418138 "0/0" "0/0" "0/0"
## HiC_scaffold_74_21254425 "1/1" "1/1" "0/1"
## HiC_scaffold_74_22261065 "0/0" "1/1" "1/1"
## HiC_scaffold_74_47132519 "1|1" NA "0/0"
## HiC_scaffold_74_50979096 NA "0/0" "1/1"
## HiC_scaffold_74_51060549 NA "0/0" "0/0"
## HiC_scaffold_74_53256803 "0/0" "0/0" "0/0"
## HiC_scaffold_74_55464169 "0/1" NA "0/1"
## HiC_scaffold_74_55515512 "0/0" NA NA
## HiC_scaffold_74_55999260 NA "0/0" "0/0"
## HiC_scaffold_74_57404902 "1|1" NA "1|1"
## HiC_scaffold_74_58181927 "0/1" "0/0" "0/0"
## HiC_scaffold_74_58198600 "0/0" "0/0" "0/0"
## HiC_scaffold_74_63060195 "1/1" "1/1" "1/1"
## HiC_scaffold_75_5345466 "1|1" "0/0" NA
## HiC_scaffold_75_5346522 "1/1" "1/1" "0/0"
## HiC_scaffold_75_5346535 "1/1" "1/1" "0/0"
## HiC_scaffold_75_9850973 "1/1" "1/1" NA
## HiC_scaffold_76_27149820 "0/0" "0/1" "0/0"
## HiC_scaffold_76_31582908 "0/0" "1/1" "0/0"
## HiC_scaffold_76_31792815 "1/1" NA "0/1"
## HiC_scaffold_76_35352820 NA "0/0" "1/1"
## HiC_scaffold_76_57782171 "0/1" "1/1" "0/1"
## HiC_scaffold_76_59862401 NA "1|1" "0/0"
## HiC_scaffold_76_61095594 "1|1" "0/0" "0/0"
## HiC_scaffold_76_65496128 "0/0" "1/1" "0/1"
## HiC_scaffold_76_68965847 "1/1" NA "1/1"
## HiC_scaffold_76_68966411 "1/1" NA "1/1"
## HiC_scaffold_76_69823482 "0/0" "1/1" "0/0"
## HiC_scaffold_76_73343841 "1/1" "1/1" "1/1"
## HiC_scaffold_77_3598274 "0/0" "1|1" "0/0"
## HiC_scaffold_77_6982137 NA NA "0/0"
## HiC_scaffold_77_11021994 "0/1" "1/1" "1/1"
## HiC_scaffold_77_13608165 "0/1" "0/0" "0/0"
## HiC_scaffold_77_16888594 "0/1" "1|1" "0/0"
## HiC_scaffold_77_16888623 "0/1" "0/0" "1/1"
## HiC_scaffold_77_16889448 NA "0/0" "1/1"
## HiC_scaffold_77_39784685 "1|1" "1|1" NA
## HiC_scaffold_77_44375866 "0/0" "0/0" "0/0"
## HiC_scaffold_77_45385370 "0/0" "1/1" "1/1"
## HiC_scaffold_78_5719919 NA "0/1" NA
## HiC_scaffold_78_11353297 "1|1" "0/0" "0|1"
## HiC_scaffold_78_27316392 "0/0" "1/1" "0/0"
## HiC_scaffold_78_48124809 "0/0" "0/0" "2|2"
## HiC_scaffold_78_48124826 "1/1" "1/1" "1|1"
## HiC_scaffold_78_48126176 "0/0" "0/0" "0/1"
## HiC_scaffold_78_48279096 "1/1" "0/0" "0/0"
## HiC_scaffold_78_48434558 "0/0" "0/0" "0/1"
## HiC_scaffold_78_49759181 "0/0" "1|1" "0/0"
## HiC_scaffold_78_49759192 "1|1" NA "0/0"
## HiC_scaffold_78_49759215 "1/1" "0/0" "0/0"
## HiC_scaffold_78_51364025 "1/1" "1/1" NA
## HiC_scaffold_78_55395445 "0/0" NA "0/1"
## HiC_scaffold_78_59610866 "0/0" "0/0" NA
## HiC_scaffold_78_62136661 "0/0" "1/1" "0/0"
## HiC_scaffold_79_1643780 NA NA "0/0"
## HiC_scaffold_79_2519178 "0/1" "1/1" "1/1"
## HiC_scaffold_79_2858100 "0/0" "1/1" "0/0"
## HiC_scaffold_79_3922454 "0/0" "0/0" "0/0"
## HiC_scaffold_79_4127878 "0/0" "1|1" "1|1"
## HiC_scaffold_79_4543693 "0/0" "0/0" "0/0"
## HiC_scaffold_79_11507678 NA NA "0/0"
## HiC_scaffold_79_12618812 "0/0" "0/0" "0/0"
## HiC_scaffold_79_14185404 "1|1" "1|1" "1|1"
## HiC_scaffold_79_17120237 "0/0" NA "0/1"
## HiC_scaffold_79_17120254 "0/0" NA "0/1"
## HiC_scaffold_79_35551507 "0/0" "0/0" "0/1"
## HiC_scaffold_79_35551543 "0/0" "0/0" "0/1"
## HiC_scaffold_79_38927423 "0|1" "0/0" "0/0"
## HiC_scaffold_79_42623307 NA "1|1" NA
## HiC_scaffold_79_43179786 "1/1" "0/0" "0/0"
## HiC_scaffold_79_43180099 "1/1" NA "1/1"
## HiC_scaffold_79_43828078 "0/0" "0/0" "0/0"
## HiC_scaffold_79_43872513 "0/0" NA "0/0"
## HiC_scaffold_79_44627215 NA NA "1/1"
## HiC_scaffold_79_50772769 "0/0" "0/1" "0/0"
## HiC_scaffold_79_55468575 NA NA "1/1"
## HiC_scaffold_79_55816114 "0/0" "1/1" "1/1"
## HiC_scaffold_79_59915784 NA NA "0/0"
## HiC_scaffold_79_60165298 "0/0" "0/0" "1/1"
## HiC_scaffold_79_60165305 "0/0" "0/0" "0/1"
## HiC_scaffold_79_69145556 "0/2" NA "0/2"
## HiC_scaffold_79_70208305 "0|1" NA "0|1"
## HiC_scaffold_79_73412292 "0/0" "0/0" "0/0"
## HiC_scaffold_79_73416663 NA "1|1" "1|1"
## HiC_scaffold_79_73416688 "0/0" "1|1" "0/0"
## HiC_scaffold_79_76863102 NA NA "0/0"
## HiC_scaffold_79_81279649 "1|1" "1|1" "1|1"
## HiC_scaffold_79_81499990 "0/1" "1/1" "0/1"
## HiC_scaffold_79_82319836 "1|1" "1|1" NA
## HiC_scaffold_79_82319849 "1|1" "1|1" "1/1"
## HiC_scaffold_79_83163707 "1/1" "0/0" "1/1"
## HiC_scaffold_79_86283512 "1/1" "1/1" "1/1"
## HiC_scaffold_79_87123758 NA NA "0/0"
## HiC_scaffold_79_88362889 "1/1" "0/0" "0/1"
## HiC_scaffold_79_88599431 "1/1" "0/1" "0/0"
## HiC_scaffold_79_89322919 "0/0" NA "0/1"
## HiC_scaffold_79_89331918 "0/0" NA "0/0"
## HiC_scaffold_79_91340958 "0|1" "1|1" "0|1"
## HiC_scaffold_8_13649836 NA "1|1" "0|1"
## HiC_scaffold_8_13650752 "1|1" NA "1|1"
## HiC_scaffold_8_23818233 "0/0" NA "0/1"
## HiC_scaffold_8_24123972 "0/1" NA NA
## HiC_scaffold_8_24230791 "0/1" NA "0/0"
## HiC_scaffold_8_24588423 "0|2" "0/0" "0/0"
## HiC_scaffold_8_25348483 "0/0" "1/1" "0/1"
## HiC_scaffold_8_25421933 "0/0" "0/0" "0/0"
## HiC_scaffold_8_25772942 "0/0" "1/1" "0/0"
## HiC_scaffold_8_26289589 "0/0" "0/0" "0/0"
## HiC_scaffold_8_27602740 "0/0" "0/1" "0|1"
## HiC_scaffold_8_28159063 "1/1" NA "0/1"
## HiC_scaffold_8_30829320 NA "1/1" "0/0"
## HiC_scaffold_8_31044084 "0/0" "1|1" "0/1"
## HiC_scaffold_8_31415507 NA "0/0" "0/0"
## HiC_scaffold_8_32594682 "0/0" "0/0" "0|1"
## HiC_scaffold_80_3617847 "1/1" "0/1" "0/0"
## HiC_scaffold_80_5758183 "0/0" "0/0" "0/0"
## HiC_scaffold_80_6760006 "0/0" "0|1" "1|1"
## HiC_scaffold_80_6760037 "0/0" "0/1" "1/1"
## HiC_scaffold_80_7772622 "1/1" "1/1" "1/1"
## HiC_scaffold_80_7919533 "0|2" NA "0/1"
## HiC_scaffold_80_8110052 "0/1" "1|1" "0/0"
## HiC_scaffold_80_8193366 "1/1" NA "1/1"
## HiC_scaffold_80_8625784 "1/1" "1/1" NA
## HiC_scaffold_80_8912846 "1/1" NA "1/1"
## HiC_scaffold_80_9544102 NA "1/1" "1/1"
## HiC_scaffold_80_10770701 "0/0" "0/0" NA
## HiC_scaffold_80_11590146 "1/1" NA "1/1"
## HiC_scaffold_80_16953653 NA "0/0" NA
## HiC_scaffold_80_18938832 "1|1" "0/0" "1|1"
## HiC_scaffold_80_19015946 "1/1" NA "1/1"
## HiC_scaffold_80_19404001 "1/1" "1/1" "1/1"
## HiC_scaffold_80_25346708 "0/0" NA "0/1"
## HiC_scaffold_80_37479851 "0/0" NA "0/0"
## HiC_scaffold_80_37507516 "0/0" NA "1/1"
## HiC_scaffold_81_1187192 "0/0" "0/0" "0/1"
## HiC_scaffold_81_2689826 NA NA "1|1"
## HiC_scaffold_81_2690751 "0/0" NA "1|1"
## HiC_scaffold_81_6614123 "0/0" "0/0" "1/1"
## HiC_scaffold_81_7836855 "0/1" "0/0" "0/1"
## HiC_scaffold_81_10334868 NA "0/0" "1/1"
## HiC_scaffold_81_10458752 "0/0" NA "0/0"
## HiC_scaffold_81_17515538 "1|1" "1/1" "1|1"
## HiC_scaffold_81_40271282 "1/1" "0/0" "0/0"
## HiC_scaffold_81_40271294 "0/0" "1/1" "1/1"
## HiC_scaffold_81_41096427 "0/0" "0/0" "0|1"
## HiC_scaffold_81_41096444 "0/0" "0/0" "0|1"
## HiC_scaffold_81_43820595 "0/0" "0/0" "0/0"
## HiC_scaffold_81_43820732 NA "1|1" "0/0"
## HiC_scaffold_81_43854278 "0/0" "0/0" "0/1"
## HiC_scaffold_81_44804862 "1/1" NA "0/0"
## HiC_scaffold_81_45063428 NA "0|1" "0/0"
## HiC_scaffold_81_45950590 "0/1" NA "0/1"
## HiC_scaffold_81_46714752 "1|1" "0/0" "0/0"
## HiC_scaffold_81_46714759 "0/0" "0/0" "0/0"
## HiC_scaffold_81_47170397 "1|1" NA "1|1"
## HiC_scaffold_81_47628201 "0/0" "0/0" "1|1"
## HiC_scaffold_81_48105216 "1|1" "1|1" "0/0"
## HiC_scaffold_81_48932070 "1/1" "0/0" "1/1"
## HiC_scaffold_81_54050146 NA NA "1/1"
## HiC_scaffold_82_5672063 "1/1" "0/0" "0/0"
## HiC_scaffold_82_8796823 NA NA "1|1"
## HiC_scaffold_82_13450959 "0/0" NA "0/0"
## HiC_scaffold_82_26144442 "0/0" "0/0" "0/0"
## HiC_scaffold_82_26147011 "1|1" "0/0" "1|1"
## HiC_scaffold_82_28907834 NA "0/0" "0/0"
## HiC_scaffold_82_34413793 "1/1" "0|1" "0/0"
## HiC_scaffold_82_34413800 NA "0|1" "0/0"
## HiC_scaffold_82_36173035 "0/1" "0/0" "0/1"
## HiC_scaffold_82_40539273 "1/1" "0/1" "1/1"
## HiC_scaffold_82_41470256 NA "1/1" "1/1"
## HiC_scaffold_83_23993605 "0/1" "0/0" "0/0"
## HiC_scaffold_83_35035961 "0/0" NA "0/0"
## HiC_scaffold_83_43423618 "0/0" "1|1" "1|1"
## HiC_scaffold_83_46920654 NA "0/0" NA
## HiC_scaffold_83_46934197 "1|1" "0/0" NA
## HiC_scaffold_84_356301 "1|1" NA "0/1"
## HiC_scaffold_84_5761817 NA NA "0/0"
## HiC_scaffold_84_5769022 "1|1" "0/0" NA
## HiC_scaffold_84_6288130 "0/1" "0/0" "0/1"
## HiC_scaffold_84_6288141 "1/1" "1|1" "0/0"
## HiC_scaffold_84_6288147 "0/1" "1|1" "0/0"
## HiC_scaffold_84_7069238 "0/0" "1|1" "1|1"
## HiC_scaffold_84_9131309 "1/1" NA "1/1"
## HiC_scaffold_84_10148442 "0/0" "0/0" "0/0"
## HiC_scaffold_84_14659391 "1/1" NA "1/1"
## HiC_scaffold_84_16302752 "2|2" "1/1" "0/0"
## HiC_scaffold_84_18463244 "1/1" "1/1" "1/1"
## HiC_scaffold_84_22909575 NA "1|1" "0/0"
## HiC_scaffold_84_29275266 "0/0" NA NA
## HiC_scaffold_84_31184610 "1/1" "0/0" "1/1"
## HiC_scaffold_84_33093169 NA "0/0" "0/0"
## HiC_scaffold_84_37675180 "0/1" "0/0" "0/0"
## HiC_scaffold_84_39501814 "0/0" "0/0" "0/1"
## HiC_scaffold_84_50169438 "0|1" NA "0/0"
## HiC_scaffold_84_50169445 "0|1" NA "0/0"
## HiC_scaffold_84_51231025 "0/0" "0/0" "0/0"
## HiC_scaffold_85_9792207 "1|1" "1|1" "0|1"
## HiC_scaffold_85_11784233 "0/0" "0/1" "0/0"
## HiC_scaffold_85_11911022 "0/0" "1|1" NA
## HiC_scaffold_85_11911142 "0/0" "0/1" "1/1"
## HiC_scaffold_85_11913828 "0/0" "0/0" "1/1"
## HiC_scaffold_85_11913831 "1/1" "1/1" "0/0"
## HiC_scaffold_85_12353081 "0/1" "0/1" "0/0"
## HiC_scaffold_85_12414551 "0/0" "0/2" "0/0"
## HiC_scaffold_85_13043967 "0/0" "0/0" "0|1"
## HiC_scaffold_85_13221888 "1/1" "0/0" "1/1"
## HiC_scaffold_85_27008863 "0/1" NA "0/1"
## HiC_scaffold_85_28992264 "0|1" "0/0" "1/1"
## HiC_scaffold_85_28992268 "1/1" "0/0" "0/0"
## HiC_scaffold_85_64310850 "0/0" NA "1|1"
## HiC_scaffold_85_65135112 "0|2" "0/0" "0/0"
## HiC_scaffold_85_65563529 "0/0" "0/0" "0/0"
## HiC_scaffold_86_1949664 "0/0" "0/0" "0|1"
## HiC_scaffold_86_5340423 "0/0" NA "0/0"
## HiC_scaffold_86_5483991 "0/0" NA "1|1"
## HiC_scaffold_86_8928469 NA "0/0" "1/1"
## HiC_scaffold_86_23727924 "0/0" "0/0" NA
## HiC_scaffold_86_24825818 "1|1" "1|1" "1|1"
## HiC_scaffold_86_25333718 "1/1" "1/1" "0/1"
## HiC_scaffold_86_29668168 "0/0" NA "1|1"
## HiC_scaffold_86_30914243 "1|1" "1|1" "1|1"
## HiC_scaffold_86_32040320 "0|1" "0/0" "0|1"
## HiC_scaffold_86_32040329 "0|1" "0/0" "0|1"
## HiC_scaffold_86_32125061 "0/0" NA "0/1"
## HiC_scaffold_86_32144758 "0/0" "1/1" NA
## HiC_scaffold_86_32153692 "1/1" "1/1" "1/1"
## HiC_scaffold_86_32534129 "0/0" "0/1" "1/1"
## HiC_scaffold_86_32605768 NA NA "1|1"
## HiC_scaffold_86_36355399 NA "0/0" "0/0"
## HiC_scaffold_86_36357265 "1/1" "1/1" "0/1"
## HiC_scaffold_87_1253643 "1/1" "0/0" "0/1"
## HiC_scaffold_87_2137958 "0/0" "0/0" "1/1"
## HiC_scaffold_87_3980100 "1/1" "1/1" "1/1"
## HiC_scaffold_87_4395923 NA NA "0/0"
## HiC_scaffold_87_5489328 "1|1" "1|1" "0/1"
## HiC_scaffold_87_6300441 "1|1" NA "1/1"
## HiC_scaffold_87_16306904 "0/0" "1/1" "1/1"
## HiC_scaffold_87_44780945 "0/0" "0/0" "0/0"
## HiC_scaffold_88_5584327 "1|1" "1/1" "0/1"
## HiC_scaffold_88_7104630 "0/0" NA "0|1"
## HiC_scaffold_88_7104631 "0/0" NA "1|1"
## HiC_scaffold_88_7104638 "0|1" NA "1|1"
## HiC_scaffold_88_7104639 "0|1" NA "1|1"
## HiC_scaffold_88_7104640 "0|1" NA "0/1"
## HiC_scaffold_88_7479340 "1/1" NA "0/1"
## HiC_scaffold_88_8773607 "1/1" "0/0" "1|1"
## HiC_scaffold_88_9883678 "1|1" "1|1" "1|1"
## HiC_scaffold_88_10878718 "0/0" NA "0/0"
## HiC_scaffold_88_19365116 NA "1/1" "1/1"
## HiC_scaffold_88_20477349 "0/1" "1|1" "0/0"
## HiC_scaffold_88_20557885 "1/1" "0/1" "0/1"
## HiC_scaffold_89_675045 NA NA "0/0"
## HiC_scaffold_89_2815845 "0/0" "0/0" "1/1"
## HiC_scaffold_89_2843940 "1/1" "1/1" "0/0"
## HiC_scaffold_89_3018830 "1/1" NA "0/1"
## HiC_scaffold_89_13745506 "0/1" "0/0" "0/0"
## HiC_scaffold_89_30006907 "1/1" "0/0" "0/0"
## HiC_scaffold_89_36509388 "0/0" "0/0" "0/1"
## HiC_scaffold_89_38703735 "0/0" "1/1" NA
## HiC_scaffold_89_38764895 "1/1" "1/1" "1/1"
## HiC_scaffold_89_42052609 "1/1" "0/0" "1/1"
## HiC_scaffold_89_42054991 "1/1" NA "1/1"
## HiC_scaffold_89_44306958 "0/1" NA "1/1"
## HiC_scaffold_89_44338206 "0/0" "0/1" "1/1"
## HiC_scaffold_89_45298973 "1/1" "1/1" "1/1"
## HiC_scaffold_9_3529921 "0/0" "1/1" "0/0"
## HiC_scaffold_9_5660454 "0/0" "0|1" "0/0"
## HiC_scaffold_9_5660461 "1/1" "1|1" "1|1"
## HiC_scaffold_9_5854070 "1/1" NA "1/1"
## HiC_scaffold_9_6142415 "0|1" "1|1" NA
## HiC_scaffold_9_6142436 "0|1" "1|1" NA
## HiC_scaffold_9_6143781 "1/1" NA "1/1"
## HiC_scaffold_9_6654825 "1/1" "0/0" "0/0"
## HiC_scaffold_9_7094545 "1|1" NA "0/0"
## HiC_scaffold_9_7100208 "1|1" "0/0" "0/0"
## HiC_scaffold_9_7109988 "0/0" "0/0" "0/0"
## HiC_scaffold_9_7111922 NA "0/0" "0/0"
## HiC_scaffold_9_8235781 "1/1" "1/1" "1/1"
## HiC_scaffold_9_8279558 NA NA NA
## HiC_scaffold_9_15679481 "0/0" NA NA
## HiC_scaffold_9_18082611 "0/0" NA "0/0"
## HiC_scaffold_9_18090830 "0/0" "0/0" "1/1"
## HiC_scaffold_9_30240531 "1/1" "0/1" NA
## HiC_scaffold_90_10418696 "0/0" "0/0" "0/1"
## HiC_scaffold_90_11470224 "1/1" "0/0" "0/0"
## HiC_scaffold_90_13593319 "0/0" "1/1" "1/1"
## HiC_scaffold_90_16260161 "1|1" NA "0/0"
## HiC_scaffold_90_22325499 "0/0" "0/0" "1/1"
## HiC_scaffold_90_23574204 "1|1" "0/0" "0|1"
## HiC_scaffold_90_23609908 "1|1" NA "0/1"
## HiC_scaffold_90_23623078 "1|1" NA "1|1"
## HiC_scaffold_90_23626883 "0/0" "0/0" "0/1"
## HiC_scaffold_90_23812663 "1/1" "1/1" "1/1"
## HiC_scaffold_90_25939283 "0/0" NA "0/1"
## HiC_scaffold_90_25985714 NA "0/0" "0/1"
## HiC_scaffold_90_30751272 "0/0" "0/1" "1/1"
## HiC_scaffold_90_31232025 "1|1" "0/0" "1|1"
## HiC_scaffold_90_31245699 "0/0" "1/1" "0/0"
## HiC_scaffold_90_31527975 "1/1" "0/0" "0/1"
## HiC_scaffold_90_31546172 "0|1" "0/0" "0/1"
## HiC_scaffold_90_38511996 "1|1" "0/0" "1|1"
## HiC_scaffold_90_38511999 "1|1" "0/0" "1|1"
## HiC_scaffold_90_38517279 NA NA NA
## HiC_scaffold_90_40624104 "0/1" "1/1" "0/0"
## HiC_scaffold_91_5644765 "0/0" "0/0" NA
## HiC_scaffold_91_5867214 "1|1" "1|1" "0|1"
## HiC_scaffold_91_5867226 "1|1" "1|1" "0|1"
## HiC_scaffold_91_7704263 "0/0" NA "0/0"
## HiC_scaffold_91_7871360 "1/1" NA "1/1"
## HiC_scaffold_91_8538014 "1/1" NA "1/1"
## HiC_scaffold_91_13230485 "0/0" "0/0" "1|1"
## HiC_scaffold_91_28696118 NA NA "1|1"
## HiC_scaffold_91_28696625 "0/1" NA "0/0"
## HiC_scaffold_91_42177482 "1|1" "0/0" NA
## HiC_scaffold_91_46813640 NA "0/1" "0/0"
## HiC_scaffold_92_23783035 "0|2" NA "0/1"
## HiC_scaffold_92_23783036 "0|2" NA "0/1"
## HiC_scaffold_92_24712793 "0/0" "1|1" NA
## HiC_scaffold_92_28698258 NA NA "0/1"
## HiC_scaffold_92_40691582 "2/2" NA "0/0"
## HiC_scaffold_92_43967712 NA "0/1" "0|1"
## HiC_scaffold_92_47147572 "0|1" "0|1" "1|1"
## HiC_scaffold_92_49042714 "0/0" "1|1" "1|1"
## HiC_scaffold_92_49042715 "0/0" "1|1" "1|1"
## HiC_scaffold_92_53634002 "1|1" "1/1" "1/1"
## HiC_scaffold_92_58211868 "1|1" "1|1" "0/0"
## HiC_scaffold_92_60114155 "1|1" NA NA
## HiC_scaffold_92_63603483 "0/0" "0/1" "0/0"
## HiC_scaffold_92_64797225 "0/2" NA "0/2"
## HiC_scaffold_92_68367476 "0/0" "0/0" "0|1"
## HiC_scaffold_93_1912167 "1|1" "1/1" "0/0"
## HiC_scaffold_93_2485978 "0/0" "0/0" "0/1"
## HiC_scaffold_93_3227638 "1/1" NA "0/0"
## HiC_scaffold_93_3227641 "0/0" NA "1|1"
## HiC_scaffold_93_13971208 "0/0" "1/1" "1/1"
## HiC_scaffold_93_13987080 NA "1/1" "0/1"
## HiC_scaffold_93_21125468 "0/0" NA "1/1"
## HiC_scaffold_93_21845293 "0/0" NA "0/1"
## HiC_scaffold_93_21845310 "1|1" NA "0/0"
## HiC_scaffold_93_21846342 "0/0" NA "0|1"
## HiC_scaffold_93_21846356 "0/0" "0/0" "0|1"
## HiC_scaffold_93_22589723 "0/0" "0/0" "0/1"
## HiC_scaffold_93_22619278 "1/1" "1/1" "1/1"
## HiC_scaffold_93_22631258 "0|1" NA "1|1"
## HiC_scaffold_93_22631266 "0|1" NA "1|1"
## HiC_scaffold_94_3110102 "1/1" "1/1" "0/0"
## HiC_scaffold_94_3205919 "0/0" "1/1" "1|1"
## HiC_scaffold_94_9023846 "0/0" "0/0" "0/1"
## HiC_scaffold_94_11572820 "0/0" "0/0" "1/1"
## HiC_scaffold_94_12368532 "0/0" "1/1" "0/1"
## HiC_scaffold_94_42179418 NA "0/0" "1/1"
## HiC_scaffold_94_42179519 NA "0/1" "0/0"
## HiC_scaffold_94_51646206 "0/0" NA "0/0"
## HiC_scaffold_94_52781289 "0/0" "0/0" "1/1"
## HiC_scaffold_94_53790035 "0/1" "0/0" "0/1"
## HiC_scaffold_94_53792738 "0/1" NA NA
## HiC_scaffold_94_56768905 "1|1" "1|1" "0/0"
## HiC_scaffold_946_81276 "0/0" NA "1/1"
## HiC_scaffold_95_3189690 "1/1" "1/1" NA
## HiC_scaffold_95_4397298 NA "0/0" "1|1"
## HiC_scaffold_95_9469157 "1|1" "0/0" "0|1"
## HiC_scaffold_95_10641411 "0/0" "0/0" "0/1"
## HiC_scaffold_95_10949821 "1/1" "0/0" "0/0"
## HiC_scaffold_95_12993394 "0/0" "0/0" "1|1"
## HiC_scaffold_95_15515793 "1|1" "0/0" "0|1"
## HiC_scaffold_95_15608785 "0|1" "0/0" "0|1"
## HiC_scaffold_95_15609137 "1/1" "0/0" "0/1"
## HiC_scaffold_95_16295316 "0/1" "0/0" "0/1"
## HiC_scaffold_95_22656165 "0|1" "0|0" "0/0"
## HiC_scaffold_95_25885727 "1/1" "1/1" "0/0"
## HiC_scaffold_96_10460019 "1/1" NA "0/0"
## HiC_scaffold_96_27155785 NA "0/1" "0/0"
## HiC_scaffold_96_37939434 "0|1" "0/0" NA
## HiC_scaffold_96_51115048 "1|1" NA "1/1"
## HiC_scaffold_96_51116511 "1/1" NA "0/1"
## HiC_scaffold_96_51915040 "0|1" NA "1|1"
## HiC_scaffold_96_52681287 NA "0/0" "0/0"
## HiC_scaffold_96_53276519 NA "0/1" "0/0"
## HiC_scaffold_97_1736926 "0/0" "0/0" "0/0"
## HiC_scaffold_97_1736994 "0/1" NA "0/0"
## HiC_scaffold_97_3863543 "1/1" "1/1" "1/1"
## HiC_scaffold_97_4200445 NA NA "0/0"
## HiC_scaffold_97_4799162 "0/0" "0/0" "0/0"
## HiC_scaffold_97_5027892 "1/1" "1/1" "0/1"
## HiC_scaffold_97_8007933 NA "0/0" "0/0"
## HiC_scaffold_97_17997210 "0/0" "1|1" "0/0"
## HiC_scaffold_97_18604647 "1/1" NA "1/1"
## HiC_scaffold_97_20239636 "1/1" "0/0" "0/1"
## HiC_scaffold_98_15154096 "1|1" NA "0/1"
## HiC_scaffold_98_22342667 NA NA "1/1"
## HiC_scaffold_98_22634293 "1|1" "1|1" "1|1"
## HiC_scaffold_98_22634294 "1|1" "1|1" "1|1"
## HiC_scaffold_98_22721138 "1/1" "1/1" "1/1"
## HiC_scaffold_98_22869378 "1/1" "0/0" "1/1"
## HiC_scaffold_98_24108405 NA "1|1" "1|1"
## HiC_scaffold_98_27359592 "0/1" "0/0" "0/0"
## HiC_scaffold_98_28549834 "0/0" NA "1/1"
## HiC_scaffold_98_28867520 "0/1" "0|1" "0/1"
## HiC_scaffold_98_28867524 "0/0" "0|2" "0/0"
## HiC_scaffold_98_29431717 "1|1" "0/1" "1|1"
## HiC_scaffold_98_29675109 "0/0" NA "0/0"
## HiC_scaffold_99_1163244 "0/0" "1/1" "1/1"
## HiC_scaffold_99_1451611 "0/0" NA "0/0"
## HiC_scaffold_99_2021961 "0/0" "2|2" "1|1"
## HiC_scaffold_99_5134392 "0/1" NA "0/0"
## HiC_scaffold_99_5239109 "1/1" "0/0" "1/1"
## HiC_scaffold_99_6917738 "1|1" NA "1|1"
## HiC_scaffold_99_11221970 "0/0" "1|1" "0/0"
## HiC_scaffold_99_25982503 "1/1" NA "0/0"
## Tank_1_Crab_1 Tank_1_Crab_2 Tank_1_Crab_3
## HiC_scaffold_1_2523394 "0/0" "0/0" "0/0"
## HiC_scaffold_1_2542157 "0/1" NA "0/0"
## HiC_scaffold_1_2647806 "1/1" "1/1" "1/1"
## HiC_scaffold_1_2970226 "0/0" "1|1" "0/0"
## HiC_scaffold_1_3329447 NA "0/0" "0/0"
## HiC_scaffold_1_3795100 NA "0/0" NA
## HiC_scaffold_10_2221345 "0/0" "1|1" "1/1"
## HiC_scaffold_10_2299490 "0/0" "0/0" "0|1"
## HiC_scaffold_10_2565301 "0/0" "0/0" "1/1"
## HiC_scaffold_10_3864355 "1/1" "0/1" "0/1"
## HiC_scaffold_10_4319900 "1|1" "1|1" "1|1"
## HiC_scaffold_10_4319907 "1|1" "1|1" "1|1"
## HiC_scaffold_10_5404579 "0/0" "0/0" "1/1"
## HiC_scaffold_10_5843373 NA "1/1" "0/0"
## HiC_scaffold_100_854947 "1|1" "0/0" "0/0"
## HiC_scaffold_100_1070817 "1/1" "0/0" "0/0"
## HiC_scaffold_100_2002094 "0/0" NA "0/0"
## HiC_scaffold_100_2002097 "0/0" NA "0/0"
## HiC_scaffold_100_2010331 "1|1" NA "0/0"
## HiC_scaffold_100_5186498 "0/1" "1/1" "1/1"
## HiC_scaffold_100_5828477 "0/0" "0/0" "1/1"
## HiC_scaffold_100_6470419 NA "0/0" "1|1"
## HiC_scaffold_100_6739225 "0/0" "1/1" "1/1"
## HiC_scaffold_100_6739258 "0/0" "1|1" "1|1"
## HiC_scaffold_100_6739264 "0/0" "1|1" "1|1"
## HiC_scaffold_100_6907177 "0/0" "0/0" NA
## HiC_scaffold_100_8384481 NA NA "0/0"
## HiC_scaffold_100_8384495 NA NA "0/0"
## HiC_scaffold_100_9451470 "1/1" "0/0" "0/0"
## HiC_scaffold_100_10464574 "0/1" "0/1" "0/0"
## HiC_scaffold_100_11934792 "0/0" NA "0/0"
## HiC_scaffold_100_11980177 "1/1" NA "1/1"
## HiC_scaffold_100_18465760 "0/0" "0/0" "1|1"
## HiC_scaffold_100_18465762 "0/0" "0/0" "1|1"
## HiC_scaffold_100_18466205 "0/0" "0/0" "0/0"
## HiC_scaffold_100_31738115 "1/1" "0/0" "0/0"
## HiC_scaffold_100_44227362 "1|1" NA NA
## HiC_scaffold_101_12808961 NA "0/0" "0/0"
## HiC_scaffold_101_13897149 "1/1" "0|1" "0/0"
## HiC_scaffold_101_18337279 "0/1" NA "0/0"
## HiC_scaffold_101_20800167 NA "1/1" NA
## HiC_scaffold_102_2260041 NA "0/0" NA
## HiC_scaffold_102_8734519 "0/0" "1|1" "1|1"
## HiC_scaffold_102_10233999 NA "0/0" "1|1"
## HiC_scaffold_102_11446042 NA "0/1" NA
## HiC_scaffold_102_15918694 NA "1|1" "1/1"
## HiC_scaffold_102_15935667 "0/0" "1|1" "1|1"
## HiC_scaffold_102_17442643 "1/1" NA "0/1"
## HiC_scaffold_102_17608969 "0/0" "0/0" "1/1"
## HiC_scaffold_102_20180185 NA NA "1/1"
## HiC_scaffold_102_24788723 "0/0" NA "0/0"
## HiC_scaffold_102_25423729 "1|1" "1|1" NA
## HiC_scaffold_102_39755142 "0/0" "0/0" "1/1"
## HiC_scaffold_102_52046978 "1/1" NA "0/0"
## HiC_scaffold_1027_34152 "1/1" "0/0" "0/0"
## HiC_scaffold_103_601715 "1/1" "1/1" "0/1"
## HiC_scaffold_103_2891384 "1/1" "0/0" NA
## HiC_scaffold_103_8191270 "0/0" "1/1" NA
## HiC_scaffold_103_9521272 NA "1/1" NA
## HiC_scaffold_103_14768909 NA "0/0" NA
## HiC_scaffold_103_19312119 NA "1|1" "1/1"
## HiC_scaffold_103_21284866 "0/0" "0/0" "0/0"
## HiC_scaffold_103_31428453 "0/0" "1|1" "1|1"
## HiC_scaffold_103_42567396 "1/1" "1|1" NA
## HiC_scaffold_103_45921571 NA "0/0" "0/0"
## HiC_scaffold_103_45921573 "0/0" "0/0" "0/0"
## HiC_scaffold_103_49592022 "1|1" "0/1" "0/0"
## HiC_scaffold_103_49620132 "0/0" "0/0" "1|1"
## HiC_scaffold_103_50440915 "0/0" NA "0/0"
## HiC_scaffold_103_51944137 "0/0" "1/1" "1/1"
## HiC_scaffold_103_54308582 "0/0" "0/0" "1|1"
## HiC_scaffold_103_54424067 "0/0" "0/0" "0/0"
## HiC_scaffold_103_56932900 "1/1" "1/1" "1/1"
## HiC_scaffold_103_57470264 "1|1" "1|1" NA
## HiC_scaffold_104_7771140 NA "1/1" "1/1"
## HiC_scaffold_104_9103028 "1/1" "0/0" "1/1"
## HiC_scaffold_104_10633168 NA "1/1" "0/0"
## HiC_scaffold_104_18917031 NA "0/1" "0/0"
## HiC_scaffold_104_20851902 "0/0" NA "0/0"
## HiC_scaffold_104_24451803 NA "0/1" "0/1"
## HiC_scaffold_104_28597688 "0/0" "0/0" NA
## HiC_scaffold_104_40927999 "0/0" "1/1" "1/1"
## HiC_scaffold_104_46490074 "0/0" "0/0" "0/0"
## HiC_scaffold_104_49759053 NA "1/1" "0/0"
## HiC_scaffold_104_57267896 NA "1/1" "0/0"
## HiC_scaffold_104_62570010 "0/0" NA "0/0"
## HiC_scaffold_11_32804173 "0/1" "0/0" "0/0"
## HiC_scaffold_11_34516508 "1/1" "1|1" "1/1"
## HiC_scaffold_11_35332996 "0/1" "1/1" "1/1"
## HiC_scaffold_11_35904027 NA "1|1" "0/0"
## HiC_scaffold_11_41539793 "1|1" "1|1" "1|1"
## HiC_scaffold_11_41604080 NA "1/1" NA
## HiC_scaffold_11_42855323 "0/0" "0/0" "0/0"
## HiC_scaffold_11_45339409 "0|1" "1/1" "0/0"
## HiC_scaffold_11_45339410 "0/1" "0/0" "1|1"
## HiC_scaffold_11_47544035 "1|1" "1/1" "1/1"
## HiC_scaffold_12_7515164 "0/0" NA "0/1"
## HiC_scaffold_12_12640100 "0/1" "0/0" "0/0"
## HiC_scaffold_12_12826705 "0/0" NA "0/0"
## HiC_scaffold_12_14899285 NA "0/0" NA
## HiC_scaffold_12_17465672 "0/0" "0/0" "1/1"
## HiC_scaffold_12_22770710 "0/0" "0/0" "0/0"
## HiC_scaffold_12_32318964 "0/0" "0/0" "0/0"
## HiC_scaffold_12_35136373 "1|1" "0/0" "0/0"
## HiC_scaffold_12_40687860 NA "1|1" "1|1"
## HiC_scaffold_13_2938168 "1/1" "0/0" NA
## HiC_scaffold_13_20350974 NA "1/1" NA
## HiC_scaffold_13_27759554 "0/0" "1/1" "1/1"
## HiC_scaffold_13_28146828 "0/0" "1|1" "0/0"
## HiC_scaffold_13_28146830 "0/0" NA "0/0"
## HiC_scaffold_13_28925343 "0/1" "1/1" "0/0"
## HiC_scaffold_13_31913129 "0/0" "0/0" NA
## HiC_scaffold_13_32078924 "1|1" "1|1" "0/0"
## HiC_scaffold_13_33864805 "1/1" "1/1" NA
## HiC_scaffold_13_34892542 "0/0" "1/1" NA
## HiC_scaffold_13_34893103 NA "0/0" NA
## HiC_scaffold_13_35762551 NA "0/0" NA
## HiC_scaffold_13_35881745 NA "1/1" "1/1"
## HiC_scaffold_13_35881749 NA "0/0" "0/0"
## HiC_scaffold_14_3843214 NA "0/0" "0/0"
## HiC_scaffold_14_25884262 "0/0" "0/0" NA
## HiC_scaffold_14_27050415 "1/1" "1/1" NA
## HiC_scaffold_14_27118495 "0/1" NA NA
## HiC_scaffold_14_27277222 "0/0" "0/0" "0|2"
## HiC_scaffold_14_29215814 "0/0" "1|1" NA
## HiC_scaffold_15_2460398 "0|1" "1|1" "1|1"
## HiC_scaffold_15_2462980 "0/0" "1/1" "0/0"
## HiC_scaffold_15_2467289 NA "1/1" "1/1"
## HiC_scaffold_15_5669141 "1/1" NA NA
## HiC_scaffold_15_13700694 "0/0" "0/0" "0/0"
## HiC_scaffold_15_17825275 "0|1" "1|1" "0/0"
## HiC_scaffold_15_19938475 "0/0" "1/1" "1|1"
## HiC_scaffold_15_23865956 "1|1" "1|1" "0/0"
## HiC_scaffold_15_28837774 "0/0" "0/0" "1/1"
## HiC_scaffold_15_28837810 "0/1" "1/1" "1/1"
## HiC_scaffold_15_28837823 "0/1" "1/1" "0/0"
## HiC_scaffold_15_28837835 "1|1" "0|1" "1|1"
## HiC_scaffold_15_28837841 "1|1" "0|1" "1|1"
## HiC_scaffold_15_28837854 "1/1" "1/1" "0/1"
## HiC_scaffold_15_34827832 NA "1/1" "1/1"
## HiC_scaffold_15_34893807 "0/0" "0/1" "0/1"
## HiC_scaffold_15_35327348 "1/1" "0/0" "0/0"
## HiC_scaffold_15_42161112 "0/0" "1|1" NA
## HiC_scaffold_15_42164926 NA "0/0" "0/0"
## HiC_scaffold_15_42164946 NA "0/0" "0/0"
## HiC_scaffold_15_46289572 NA NA "1/1"
## HiC_scaffold_15_50591576 NA NA NA
## HiC_scaffold_15_50759128 NA NA NA
## HiC_scaffold_15_51188336 "1|1" NA "0/0"
## HiC_scaffold_15_54726640 "1/1" NA NA
## HiC_scaffold_15_54788235 NA NA "0/0"
## HiC_scaffold_15_56162375 "1|1" "0/0" "0/0"
## HiC_scaffold_15_61091106 "0/0" "0/0" "0/0"
## HiC_scaffold_15_61464359 "1/1" "1/1" "1/1"
## HiC_scaffold_15_61510386 NA "0/0" NA
## HiC_scaffold_15_62309788 "1|1" "1|1" NA
## HiC_scaffold_15_62309793 "1|1" "1|1" NA
## HiC_scaffold_15_62771254 "1/1" "0/0" "0/1"
## HiC_scaffold_15_63493927 NA "0/1" "0/1"
## HiC_scaffold_15_64997502 "1/1" "0/0" NA
## HiC_scaffold_15_65007865 "1/1" "0|1" "1/1"
## HiC_scaffold_15_65007879 "0/0" "0|1" "0/0"
## HiC_scaffold_15_66038529 "0/0" NA "1/1"
## HiC_scaffold_15_69811281 "1/1" "1/1" "0/0"
## HiC_scaffold_16_14205925 "0/0" "0/0" "0/0"
## HiC_scaffold_16_30404047 "0/1" "0|1" NA
## HiC_scaffold_16_57413288 "0/0" "0/0" NA
## HiC_scaffold_16_63687578 NA "1|1" "0/0"
## HiC_scaffold_16_74138787 "1/1" NA "0/0"
## HiC_scaffold_16_74140106 "0/1" "0/0" NA
## HiC_scaffold_16_76276015 "1/1" "0/1" "0/0"
## HiC_scaffold_17_11390873 NA "0/0" NA
## HiC_scaffold_17_12551128 NA NA "1/1"
## HiC_scaffold_17_16615612 "0/0" NA "0/0"
## HiC_scaffold_17_18838093 "0|1" "1|1" "1|1"
## HiC_scaffold_17_22801072 "0/0" NA "1/1"
## HiC_scaffold_17_23788599 "1/1" NA NA
## HiC_scaffold_17_29383895 "0/0" "1/1" "1/1"
## HiC_scaffold_17_29618771 NA NA "0/1"
## HiC_scaffold_17_29976139 "0/0" "1/1" "1/1"
## HiC_scaffold_17_31107213 "1/1" "1/1" "1/1"
## HiC_scaffold_17_32493792 "1|1" NA "0/0"
## HiC_scaffold_17_33732050 "0|1" "0/1" "0/0"
## HiC_scaffold_17_33801314 "0/0" NA "0/0"
## HiC_scaffold_17_34081889 "1/1" "1/1" NA
## HiC_scaffold_18_227565 "0/1" "0/1" "0/0"
## HiC_scaffold_18_1213486 "0/0" "0/0" "1|1"
## HiC_scaffold_18_1701312 "0/0" "0/0" NA
## HiC_scaffold_18_3506437 "0/0" "0/0" "1/1"
## HiC_scaffold_18_6304978 NA "1/1" NA
## HiC_scaffold_18_6351493 "1/1" NA "1/1"
## HiC_scaffold_18_6358009 "0/0" "0/0" "1/1"
## HiC_scaffold_18_10770701 NA "0/0" "1/1"
## HiC_scaffold_18_13342858 "1/1" "1/1" "1/1"
## HiC_scaffold_18_20045832 "0/0" "0/0" "0/0"
## HiC_scaffold_18_22682683 "0/0" "1/1" "1/1"
## HiC_scaffold_18_26337790 NA NA NA
## HiC_scaffold_18_48929148 "0/0" "0/0" "0/0"
## HiC_scaffold_18_51490626 NA "1/1" "1/1"
## HiC_scaffold_18_53723137 "0/0" "0/0" "0/0"
## HiC_scaffold_18_54496637 "0/0" NA "0/0"
## HiC_scaffold_18_55294388 NA "1/1" "0/1"
## HiC_scaffold_19_279726 "0/0" "0/1" "0/0"
## HiC_scaffold_19_6426572 "1/1" NA "0/1"
## HiC_scaffold_19_6575887 "1|1" "0/0" "0/0"
## HiC_scaffold_19_7755254 "0/1" "0/0" "0/0"
## HiC_scaffold_19_9301421 "0/1" NA "0/0"
## HiC_scaffold_19_9357388 "0/0" "1|1" "0/0"
## HiC_scaffold_19_9778841 NA "0/0" "0/0"
## HiC_scaffold_19_10928976 "0|1" NA "0/0"
## HiC_scaffold_19_10928980 "0|1" NA "0/0"
## HiC_scaffold_19_10928982 "0|1" NA NA
## HiC_scaffold_19_11106347 NA "0/0" NA
## HiC_scaffold_19_11590139 NA "1/1" NA
## HiC_scaffold_19_11665300 NA "1/1" "1/1"
## HiC_scaffold_19_14793640 "0/0" NA "1/1"
## HiC_scaffold_19_22112743 "0/0" "1|1" "0/0"
## HiC_scaffold_19_25473671 "1/1" "1/1" "1/1"
## HiC_scaffold_19_25473692 "0/0" "0/1" "0/1"
## HiC_scaffold_19_28110829 "0/0" NA "0/0"
## HiC_scaffold_19_28465002 "1/1" NA "1/1"
## HiC_scaffold_19_28465167 NA "0|1" "1|1"
## HiC_scaffold_19_30106869 "0/0" NA "0/0"
## HiC_scaffold_19_52538858 "1/1" "1/1" "1/1"
## HiC_scaffold_19_52596196 NA "0/1" "0/0"
## HiC_scaffold_19_53482993 "1/1" "0/1" "0/0"
## HiC_scaffold_19_54312637 "1/1" NA "1/1"
## HiC_scaffold_19_59345841 "1|1" "0/0" NA
## HiC_scaffold_2_3296144 "1|1" "1|1" "1|1"
## HiC_scaffold_2_3418589 "1/1" NA "0/0"
## HiC_scaffold_2_3864060 "0/1" "1|1" "1/1"
## HiC_scaffold_2_4104755 "0/0" "0/0" NA
## HiC_scaffold_2_4104758 "0/0" "0/0" NA
## HiC_scaffold_2_8316721 "0/1" "1/1" "0|1"
## HiC_scaffold_2_9098999 "0/1" "0/1" "0/0"
## HiC_scaffold_2_10457537 "0/0" "0/0" "0/0"
## HiC_scaffold_2_19048125 NA "0/0" NA
## HiC_scaffold_2_21748201 NA NA "1/1"
## HiC_scaffold_2_33187764 "0/0" NA "0/0"
## HiC_scaffold_2_33187770 "0/0" NA "0/0"
## HiC_scaffold_2_33187959 "1/1" "0/0" NA
## HiC_scaffold_2_41603929 "0/0" NA "0/1"
## HiC_scaffold_2_52233191 "1/1" "1|1" "0/0"
## HiC_scaffold_2_52400748 NA "1/1" NA
## HiC_scaffold_2_52403793 "1|1" "1|1" "1|1"
## HiC_scaffold_2_52799130 "1/1" "0/1" NA
## HiC_scaffold_20_10332897 NA "0/0" NA
## HiC_scaffold_20_17198418 NA "1|1" "0/0"
## HiC_scaffold_20_17915398 "1|1" "1|1" "1|1"
## HiC_scaffold_20_18872955 NA "1/1" NA
## HiC_scaffold_20_19055301 NA "1/1" "1/1"
## HiC_scaffold_20_19150094 "1/1" "1/1" "1/1"
## HiC_scaffold_20_20651022 "0/0" "0/0" "0/0"
## HiC_scaffold_20_22651296 "0/0" "1/1" "0/0"
## HiC_scaffold_21_2009156 "0/0" NA "1|1"
## HiC_scaffold_21_2435648 "1/1" NA "0/0"
## HiC_scaffold_21_7164210 NA NA NA
## HiC_scaffold_21_9786512 "0/0" "0/1" "0/0"
## HiC_scaffold_21_12424922 "1/1" "1/1" "1/1"
## HiC_scaffold_21_17966833 NA "1/1" NA
## HiC_scaffold_21_19025429 "1/1" "0/0" "0/0"
## HiC_scaffold_21_20058318 "0/0" "0/1" "0/0"
## HiC_scaffold_21_20562855 "0/0" "0/0" "0/0"
## HiC_scaffold_21_20661860 NA NA "0/0"
## HiC_scaffold_21_20895395 NA "1|1" "0/0"
## HiC_scaffold_21_21158811 "1/2" "0/0" "0/0"
## HiC_scaffold_21_22250857 NA "0/1" "1/1"
## HiC_scaffold_21_22250866 NA "0/1" "0/0"
## HiC_scaffold_21_22257737 NA NA "0/1"
## HiC_scaffold_21_22644667 "0/0" "0/0" "0/0"
## HiC_scaffold_21_22644673 "0/0" "0/0" "0/0"
## HiC_scaffold_21_22666888 NA NA "1/1"
## HiC_scaffold_21_23905416 "0/0" "0/0" "0/0"
## HiC_scaffold_21_23981651 "1|1" "0/0" "1/1"
## HiC_scaffold_21_24287068 NA "0/0" "1|1"
## HiC_scaffold_21_30798434 "0/0" "1|1" "1|1"
## HiC_scaffold_21_35006232 NA "1/1" "0/0"
## HiC_scaffold_21_35779294 "0/1" "0/1" "0/1"
## HiC_scaffold_22_124910 "0/0" NA "1/1"
## HiC_scaffold_22_751023 "1/1" NA "1|1"
## HiC_scaffold_22_1042644 "0/0" NA NA
## HiC_scaffold_22_1044708 "1/1" "1/1" "1/1"
## HiC_scaffold_22_2174911 "0/0" "1/1" NA
## HiC_scaffold_22_3431122 NA "1|1" "0/0"
## HiC_scaffold_22_3446787 "0/0" "0/0" "0/0"
## HiC_scaffold_22_3451756 "1/1" "1|1" NA
## HiC_scaffold_22_3720435 NA "1/1" NA
## HiC_scaffold_22_4065466 "1|1" "0/0" "1|1"
## HiC_scaffold_22_4739889 "0/0" "0/0" NA
## HiC_scaffold_22_4918263 "0/0" "0/0" "0/0"
## HiC_scaffold_22_5750008 "1/1" "0/1" "1/1"
## HiC_scaffold_22_5769942 "0/0" "0/0" "1|1"
## HiC_scaffold_22_28264522 "1|1" NA "1|1"
## HiC_scaffold_22_28265115 "1/1" "1/1" NA
## HiC_scaffold_22_29205851 "1/1" "1/1" NA
## HiC_scaffold_22_29822340 NA "1/1" NA
## HiC_scaffold_22_30797357 "1/1" NA "0/0"
## HiC_scaffold_22_32042610 NA "1|1" "1|1"
## HiC_scaffold_23_11215327 "0/0" "0/0" NA
## HiC_scaffold_23_27081333 "0/0" "1/1" "1/1"
## HiC_scaffold_23_28672255 "0/1" "1/1" "0/1"
## HiC_scaffold_23_29218828 NA NA NA
## HiC_scaffold_23_32528768 NA "0/1" "1|1"
## HiC_scaffold_23_32669383 NA "0|1" "1/1"
## HiC_scaffold_23_33199663 NA "0/0" "0/0"
## HiC_scaffold_23_33245843 "0/1" "0/0" NA
## HiC_scaffold_23_40824545 "0|1" "0/0" "1|1"
## HiC_scaffold_23_41504669 NA NA "0/0"
## HiC_scaffold_24_16622654 "1/1" "1/1" "1/1"
## HiC_scaffold_24_16622681 "1/1" "1/1" "1/1"
## HiC_scaffold_24_19851560 NA "1/1" "1|1"
## HiC_scaffold_24_20590563 "0/0" "1/1" "1/1"
## HiC_scaffold_24_27745754 NA "1/1" "0/0"
## HiC_scaffold_24_28763699 NA "0|1" NA
## HiC_scaffold_24_28763703 NA "0|1" NA
## HiC_scaffold_25_4135969 "1/1" "0/0" NA
## HiC_scaffold_25_4201677 "0/0" NA "0/0"
## HiC_scaffold_25_5872831 "0/1" "0/0" "0/1"
## HiC_scaffold_25_6879627 "0/0" "1/1" "0/0"
## HiC_scaffold_25_8172813 NA "1/1" "1/1"
## HiC_scaffold_25_9969507 NA NA "1|1"
## HiC_scaffold_25_10691336 "0/0" "1/1" NA
## HiC_scaffold_25_21286462 "0/0" "1/1" "1/1"
## HiC_scaffold_26_4086662 "0/0" "1/1" NA
## HiC_scaffold_26_7539671 "1|1" "0/0" NA
## HiC_scaffold_26_8348511 "1/1" "0/1" "1/1"
## HiC_scaffold_26_9043748 "0/0" "0|1" "1|1"
## HiC_scaffold_26_9045655 "1|1" "1|1" "0/0"
## HiC_scaffold_26_11253181 NA "0/0" "1|1"
## HiC_scaffold_26_17828344 "1/1" "0/1" NA
## HiC_scaffold_26_17932520 "0/1" "1/1" "1|1"
## HiC_scaffold_26_17941459 "0/0" "0/1" "1/1"
## HiC_scaffold_26_17960877 "1/1" "1/1" "1/1"
## HiC_scaffold_26_18284041 NA NA NA
## HiC_scaffold_26_18288701 "1|1" NA "1|1"
## HiC_scaffold_26_18294422 "0/0" NA "1|1"
## HiC_scaffold_26_21307365 "0/0" NA "1/1"
## HiC_scaffold_26_22159924 "1/1" "1/1" "1/1"
## HiC_scaffold_26_22161535 "0/1" "1/1" "2|2"
## HiC_scaffold_26_24794176 "1/1" "1/1" "1/1"
## HiC_scaffold_26_28538113 "1|1" "0/0" NA
## HiC_scaffold_26_29031357 "1|1" NA "1/1"
## HiC_scaffold_26_29163462 NA NA "0/0"
## HiC_scaffold_26_42631018 "0/1" NA "1|1"
## HiC_scaffold_26_42634814 "0/0" "0/1" "1/1"
## HiC_scaffold_26_43483190 "0/0" "0/0" "0/1"
## HiC_scaffold_26_49955889 "0/0" NA "1/1"
## HiC_scaffold_26_58342510 "1/1" "1|1" NA
## HiC_scaffold_27_1496120 "0/0" NA NA
## HiC_scaffold_27_1947057 "0/0" NA NA
## HiC_scaffold_27_2359058 "1|1" NA "0/0"
## HiC_scaffold_27_2699645 "0/0" "0/0" NA
## HiC_scaffold_27_4425475 NA "0/0" "0/0"
## HiC_scaffold_27_7539469 "0/0" "0/1" "0/0"
## HiC_scaffold_27_7777122 NA "0/1" NA
## HiC_scaffold_27_16657070 "1/1" "1/1" "0/0"
## HiC_scaffold_27_24539255 "1|1" "1|1" "1|1"
## HiC_scaffold_27_34642359 "0/0" "1|1" NA
## HiC_scaffold_27_34647277 NA "0/0" "0/0"
## HiC_scaffold_27_35380535 NA "1/1" "1/1"
## HiC_scaffold_27_35383230 "0/0" "1|1" "0/0"
## HiC_scaffold_28_21261390 "0/0" "0/0" "0/0"
## HiC_scaffold_28_24490442 NA "0/0" "0/0"
## HiC_scaffold_28_25601927 "1/1" "1/1" "0/0"
## HiC_scaffold_28_31793968 "0/0" NA NA
## HiC_scaffold_28_32126687 NA "0/0" NA
## HiC_scaffold_28_34779518 "1/1" "0/0" "0/0"
## HiC_scaffold_28_36042491 "0|1" "1/1" "1/1"
## HiC_scaffold_28_36692361 NA NA "1/1"
## HiC_scaffold_28_38672993 NA "0/0" "1|1"
## HiC_scaffold_28_39640526 NA "0/0" "0/0"
## HiC_scaffold_28_40169242 "0/0" "1/1" "1/1"
## HiC_scaffold_28_41059640 "1|1" NA "0/0"
## HiC_scaffold_28_42514830 "1/1" "0/1" "0/0"
## HiC_scaffold_28_42601570 "0/0" "0/0" "0/0"
## HiC_scaffold_28_42601585 "1/1" "0/1" "1/1"
## HiC_scaffold_28_43018803 "1/1" NA "0/1"
## HiC_scaffold_28_43036165 NA "0/0" "0/0"
## HiC_scaffold_29_344317 NA "0/0" "0/0"
## HiC_scaffold_29_3811176 "1/1" "0/0" "1/1"
## HiC_scaffold_29_6073993 "0/0" "1/1" NA
## HiC_scaffold_29_6415222 NA "0/0" "0/0"
## HiC_scaffold_29_8224424 "0/0" "0/0" "0/0"
## HiC_scaffold_29_11153624 "0/0" "0/0" "0/0"
## HiC_scaffold_29_11153712 NA "0/0" "0/0"
## HiC_scaffold_29_11167966 "0/0" "1/1" "0/0"
## HiC_scaffold_29_11491468 NA "0/0" NA
## HiC_scaffold_29_12103558 "1|1" "0/1" "0/0"
## HiC_scaffold_29_14279322 "0/0" NA "0/1"
## HiC_scaffold_29_14913907 "0/0" "0/0" NA
## HiC_scaffold_29_16378276 "1/1" "0/1" "1/1"
## HiC_scaffold_29_20635937 "0/0" NA NA
## HiC_scaffold_29_20636787 NA "0/0" NA
## HiC_scaffold_29_22560215 "0/1" "0/1" "1/1"
## HiC_scaffold_29_22561144 "1/1" "1/1" "1/1"
## HiC_scaffold_29_24017849 "0/0" "0/0" NA
## HiC_scaffold_29_31603590 "0/0" "0/0" NA
## HiC_scaffold_3_21670751 "1/1" NA "1/1"
## HiC_scaffold_3_24747014 NA "1/1" NA
## HiC_scaffold_3_27861792 "0/0" NA "0/0"
## HiC_scaffold_3_28057869 "1/1" "1/1" "1/1"
## HiC_scaffold_3_28441436 "1/1" "1|1" "0/0"
## HiC_scaffold_3_28694380 NA "1|1" "0/0"
## HiC_scaffold_3_31361023 "0/0" "0/0" "1/1"
## HiC_scaffold_3_31960572 NA "0/0" "0/0"
## HiC_scaffold_3_32157169 "0/0" "0/0" "0/1"
## HiC_scaffold_3_32159152 "1|1" "1|1" "0/1"
## HiC_scaffold_3_34124237 NA "0/0" NA
## HiC_scaffold_30_14199802 "0/0" "1/1" NA
## HiC_scaffold_30_16052331 "1/1" "0/0" "0/0"
## HiC_scaffold_30_19914075 NA "1/1" "0/0"
## HiC_scaffold_30_20688783 "1/1" "0/0" "1/1"
## HiC_scaffold_30_21446076 "0/0" "0/0" "0/0"
## HiC_scaffold_30_21598563 "0/0" "1/1" "0/0"
## HiC_scaffold_30_22155728 "0/0" NA "0/0"
## HiC_scaffold_31_687411 "0/0" "0/0" NA
## HiC_scaffold_31_3224722 "0/0" "1/1" "0/0"
## HiC_scaffold_31_3574854 "0/0" "0/0" NA
## HiC_scaffold_31_5899551 NA "1/1" "0/0"
## HiC_scaffold_31_5911491 "0|1" "1|1" "1|1"
## HiC_scaffold_31_6297680 "0/0" "0/1" "0/0"
## HiC_scaffold_31_12394016 "0/1" "0/0" "0/0"
## HiC_scaffold_31_12394040 "1|1" "1|1" NA
## HiC_scaffold_31_18612650 "1/1" "0/0" NA
## HiC_scaffold_32_4446859 "0/1" "1/1" NA
## HiC_scaffold_32_5274796 "0/0" "0/0" "0/1"
## HiC_scaffold_32_5275108 NA NA "0/0"
## HiC_scaffold_32_5282358 "0/1" "1/1" "0/0"
## HiC_scaffold_32_5450203 "1|1" "1|1" NA
## HiC_scaffold_32_44200178 NA "0/0" NA
## HiC_scaffold_33_638523 "1/1" NA "0/0"
## HiC_scaffold_33_44489563 NA "1/1" NA
## HiC_scaffold_33_44489988 NA NA "1/1"
## HiC_scaffold_33_47080180 "0/0" NA "0/0"
## HiC_scaffold_33_47495907 NA "0/0" "0/0"
## HiC_scaffold_33_51865876 NA NA "0/0"
## HiC_scaffold_34_1096982 "0/1" NA "1/1"
## HiC_scaffold_34_6091943 "1|1" "1|1" "1|1"
## HiC_scaffold_34_6100160 "1|1" NA "1|1"
## HiC_scaffold_34_24368584 "0/0" NA "0/0"
## HiC_scaffold_35_3233120 "0/0" "0/1" "0/0"
## HiC_scaffold_35_3253574 "1/1" "1/1" "1/1"
## HiC_scaffold_35_5512296 NA "0/0" "0/0"
## HiC_scaffold_35_15114788 "1/1" "0/0" NA
## HiC_scaffold_35_21214090 "0/0" "0/1" "1/1"
## HiC_scaffold_35_21462564 "0/0" "0/0" "1/1"
## HiC_scaffold_35_22746783 "1/1" "0/0" "0/0"
## HiC_scaffold_35_22747085 "1|1" NA "0/0"
## HiC_scaffold_35_23059580 NA NA "0/0"
## HiC_scaffold_35_23158882 NA "0/0" "0/1"
## HiC_scaffold_35_23261143 "1/1" "1/1" "1/1"
## HiC_scaffold_35_24403602 "0/0" "0/0" "0/0"
## HiC_scaffold_35_24403620 "0/0" "0/0" "0/1"
## HiC_scaffold_35_24993986 NA NA "1/1"
## HiC_scaffold_35_24993998 NA "0/0" "1|1"
## HiC_scaffold_36_1538038 NA "0/0" "1/1"
## HiC_scaffold_36_2464728 "1|1" NA "1/1"
## HiC_scaffold_36_5489050 "0/0" NA "0/0"
## HiC_scaffold_36_9673981 "0/1" "0/1" "0/0"
## HiC_scaffold_36_9674127 NA NA NA
## HiC_scaffold_36_9674756 "1/1" NA NA
## HiC_scaffold_36_9676329 "0/1" "1/1" "1/1"
## HiC_scaffold_36_12304516 NA NA "1/1"
## HiC_scaffold_36_12515555 "0/0" "1|1" "0|1"
## HiC_scaffold_36_13092647 NA "1|1" "0/0"
## HiC_scaffold_36_13766994 "0/0" "1/1" "1/1"
## HiC_scaffold_36_14567741 "0/1" "0/1" "0/1"
## HiC_scaffold_36_15530578 "1|1" NA "1|1"
## HiC_scaffold_37_679894 NA "0/0" "0/0"
## HiC_scaffold_37_916693 NA "0/0" "0/0"
## HiC_scaffold_37_928146 NA "0/0" "0/0"
## HiC_scaffold_37_1256768 "0/0" "0/0" "0|1"
## HiC_scaffold_37_1270034 "0/0" "0/0" "1/1"
## HiC_scaffold_37_1770997 NA "0|2" NA
## HiC_scaffold_37_1798298 "1/1" "0/0" "0/1"
## HiC_scaffold_37_2010342 "0/0" "0/0" NA
## HiC_scaffold_37_2141526 "0/0" "0/0" NA
## HiC_scaffold_37_3952190 "0/0" "0/0" "0|1"
## HiC_scaffold_37_3952215 "0/0" "0/0" "0|1"
## HiC_scaffold_37_9915037 NA "0/0" NA
## HiC_scaffold_38_5383430 "0/0" "0/0" "0/0"
## HiC_scaffold_38_5668363 "0/0" NA "0/0"
## HiC_scaffold_38_5879849 NA "0/1" "0/0"
## HiC_scaffold_38_5880155 "0/0" "0/1" "1/1"
## HiC_scaffold_38_10612790 "1/1" "0/0" NA
## HiC_scaffold_38_11940240 "2|2" NA "0/0"
## HiC_scaffold_38_12878826 "0/0" "0/0" "0/0"
## HiC_scaffold_38_12959698 NA "0/0" "0/1"
## HiC_scaffold_38_13087368 "1/1" "0/0" "0/0"
## HiC_scaffold_38_13480648 "1|1" NA "0/0"
## HiC_scaffold_38_13965243 NA "1/1" "1/1"
## HiC_scaffold_38_14089955 "1/1" "1/1" "0/1"
## HiC_scaffold_38_14408072 "0/0" "1|1" "0/0"
## HiC_scaffold_38_14931216 NA "1/1" "1/1"
## HiC_scaffold_38_14978356 "1|1" "0/0" NA
## HiC_scaffold_38_14978367 "1|1" "0/0" NA
## HiC_scaffold_38_15292863 "1/1" "0/0" NA
## HiC_scaffold_38_15306135 NA "1|1" "1|1"
## HiC_scaffold_38_16077506 "0/0" "1|1" "1|1"
## HiC_scaffold_38_16138965 "0/1" "0/1" "1/1"
## HiC_scaffold_38_16226040 "1/1" "1/1" "1/1"
## HiC_scaffold_39_1393769 "0/0" "1|1" "1|1"
## HiC_scaffold_39_2014970 "1|1" "1|1" NA
## HiC_scaffold_39_2014982 "1|1" "1|1" NA
## HiC_scaffold_39_2014985 "1|1" "1|1" NA
## HiC_scaffold_39_2426443 NA "1/1" "1/1"
## HiC_scaffold_39_2485330 "1/1" "0/0" NA
## HiC_scaffold_39_3350506 "0/0" "1|1" NA
## HiC_scaffold_39_5897388 NA NA "0/0"
## HiC_scaffold_39_17631133 NA NA NA
## HiC_scaffold_4_12107187 "0/0" "1/1" "1/1"
## HiC_scaffold_4_18241670 "1|1" "0|1" "0/0"
## HiC_scaffold_4_18241723 "1/1" "0|1" "0/0"
## HiC_scaffold_4_22418566 "0/0" NA "1|1"
## HiC_scaffold_4_27899990 "0/0" "0/1" "1|1"
## HiC_scaffold_4_35575118 "0/0" "0/0" NA
## HiC_scaffold_4_38000967 NA "1/1" "1/1"
## HiC_scaffold_4_50654021 "1|1" "0|1" NA
## HiC_scaffold_40_2243415 "0/0" NA NA
## HiC_scaffold_40_3000572 "1/1" "0/1" "0/0"
## HiC_scaffold_40_3014177 "1|1" "1/1" "0|1"
## HiC_scaffold_40_3027900 "1/1" "0/0" "0/0"
## HiC_scaffold_40_3143834 "0/0" NA "1/1"
## HiC_scaffold_40_3843942 "0/0" NA "1|1"
## HiC_scaffold_40_3847620 "0/0" "0/0" NA
## HiC_scaffold_40_3891007 "0/0" "1|1" "1/1"
## HiC_scaffold_40_3920667 "2/2" "2/2" "0/0"
## HiC_scaffold_40_4177963 NA NA "1/1"
## HiC_scaffold_40_4819107 NA "0/0" NA
## HiC_scaffold_40_4819834 NA "1|1" NA
## HiC_scaffold_40_5788271 "1/1" "0/0" "0/0"
## HiC_scaffold_40_5965269 "1|1" "0/0" "0/1"
## HiC_scaffold_40_6204154 "0/0" "1/1" NA
## HiC_scaffold_40_8387917 NA "0/0" "1/1"
## HiC_scaffold_41_3235384 "2/2" "0/0" NA
## HiC_scaffold_41_3583000 NA NA "1/1"
## HiC_scaffold_41_5334504 "0/0" "1|1" NA
## HiC_scaffold_41_5387631 "1|1" "0/0" "1|1"
## HiC_scaffold_41_6423426 "0/0" "0|1" "0/1"
## HiC_scaffold_41_14359947 "0/0" "1/1" NA
## HiC_scaffold_41_24007593 "0/0" NA NA
## HiC_scaffold_41_26225447 "0/0" "0/0" "0/0"
## HiC_scaffold_41_28626484 NA "1/1" "1/1"
## HiC_scaffold_41_28660620 "0/0" "0/0" "0/0"
## HiC_scaffold_41_31007688 "0/1" NA NA
## HiC_scaffold_42_1131084 "0/0" "1/1" "1/1"
## HiC_scaffold_42_1818523 "0/1" "0/0" NA
## HiC_scaffold_42_2165002 "0/2" "0/0" "0/0"
## HiC_scaffold_42_2711332 NA NA NA
## HiC_scaffold_42_6142699 "1/1" "0/0" NA
## HiC_scaffold_42_6744976 "0/1" "1/1" "1/1"
## HiC_scaffold_42_8066919 "0/0" "0/0" "1/1"
## HiC_scaffold_42_8068292 "0/0" "0|1" "0|1"
## HiC_scaffold_42_12487888 "1/1" "0|1" "0/0"
## HiC_scaffold_42_41366687 NA "0/0" "0/0"
## HiC_scaffold_42_47313337 "0/0" NA "0/0"
## HiC_scaffold_42_47313338 "0/0" NA "0/0"
## HiC_scaffold_42_50784971 NA "0/0" "0/0"
## HiC_scaffold_42_50784977 NA "0/0" "0/0"
## HiC_scaffold_42_50784981 NA "1/1" "1/1"
## HiC_scaffold_42_51916989 NA "1/1" "1/1"
## HiC_scaffold_43_3842003 "1/1" "1/1" "0/1"
## HiC_scaffold_43_14140861 "0/0" NA "0/0"
## HiC_scaffold_43_15053605 NA NA NA
## HiC_scaffold_43_17289945 NA NA NA
## HiC_scaffold_43_29967704 "0/1" "1/1" "0/0"
## HiC_scaffold_43_35745831 "1|1" "0|1" "0|1"
## HiC_scaffold_43_37627949 "0/1" "0|1" NA
## HiC_scaffold_43_37628126 NA "0/0" "0/0"
## HiC_scaffold_43_44017118 NA "0/0" "0/0"
## HiC_scaffold_43_55124138 NA "1|1" "0/0"
## HiC_scaffold_43_60107326 NA "0/0" NA
## HiC_scaffold_43_61359386 "0/0" "1/1" "1/1"
## HiC_scaffold_43_61702593 "0/0" "0/0" "0/0"
## HiC_scaffold_43_61702606 "0/0" "0/0" "0/0"
## HiC_scaffold_43_61702721 "0/0" NA NA
## HiC_scaffold_43_61702738 "0/0" NA "0/0"
## HiC_scaffold_43_62511703 "0/0" "1|1" "0/0"
## HiC_scaffold_43_64069457 "0/0" "0/0" NA
## HiC_scaffold_43_64577269 "1/1" "1/1" "1/1"
## HiC_scaffold_44_1920144 "1|1" "0/0" "1|1"
## HiC_scaffold_44_2148035 "0/0" "0/0" "0/1"
## HiC_scaffold_44_2568167 "0/0" NA "0/0"
## HiC_scaffold_45_4180070 "1/1" "0/1" "1/1"
## HiC_scaffold_45_4797754 "0/0" "2/2" "0/2"
## HiC_scaffold_45_5911123 "0/0" "0|1" NA
## HiC_scaffold_45_6958990 NA "1/1" NA
## HiC_scaffold_45_8516216 "1|1" "0/0" "0/0"
## HiC_scaffold_45_10191213 "0/0" "0/1" "0/0"
## HiC_scaffold_45_12005885 "0/1" NA NA
## HiC_scaffold_45_12006766 NA "0/1" "0/1"
## HiC_scaffold_45_24736172 "1/1" "0/0" "0/0"
## HiC_scaffold_45_24739830 "0/0" "0/0" NA
## HiC_scaffold_46_9691567 "0/0" "0|1" "0/0"
## HiC_scaffold_46_17380257 "0/1" NA "1/1"
## HiC_scaffold_46_18387147 "1|1" "0/0" "1|1"
## HiC_scaffold_46_37092355 NA "0|1" NA
## HiC_scaffold_46_39183624 "1/1" "0/0" "0/0"
## HiC_scaffold_46_39390547 "1/1" "1/1" "0|1"
## HiC_scaffold_46_42964941 "0/0" NA "0/0"
## HiC_scaffold_46_42986653 "0/0" NA NA
## HiC_scaffold_46_52074364 "1|1" "1|1" "1|1"
## HiC_scaffold_46_54255667 "1/1" NA "1/1"
## HiC_scaffold_47_3750532 NA "1/1" "1/1"
## HiC_scaffold_47_3751345 "1|1" "1|1" NA
## HiC_scaffold_47_15400639 NA "1|1" "0/0"
## HiC_scaffold_47_24072414 "0/0" "0/0" "0/0"
## HiC_scaffold_47_25273825 "0/0" NA "1|1"
## HiC_scaffold_48_8752752 NA "2|2" "1/1"
## HiC_scaffold_48_10765920 "0/1" "0/0" "0/0"
## HiC_scaffold_48_16077918 "1|1" "1|1" NA
## HiC_scaffold_48_16077940 "1|1" "1|1" "0/0"
## HiC_scaffold_48_16411609 "1/1" "1/1" "1/1"
## HiC_scaffold_48_19972580 "1/1" "1/1" "1/1"
## HiC_scaffold_48_23493079 "0/0" "1|1" "0|1"
## HiC_scaffold_48_23597210 "1|1" "0/0" NA
## HiC_scaffold_48_24478493 NA NA "0/0"
## HiC_scaffold_48_24881148 NA "0/0" "1/1"
## HiC_scaffold_48_25865723 NA "1/1" "1/1"
## HiC_scaffold_48_25984068 NA NA "1|1"
## HiC_scaffold_48_25989079 "0/1" NA "1/1"
## HiC_scaffold_48_30601375 "0/0" "0/0" "1|1"
## HiC_scaffold_48_31662115 "0/0" "1/1" NA
## HiC_scaffold_48_41971562 "1/1" "0/1" "0/1"
## HiC_scaffold_49_3392801 "0/0" "0/0" "0/0"
## HiC_scaffold_49_6101692 "1/1" NA "1/1"
## HiC_scaffold_49_7996315 NA "0/0" NA
## HiC_scaffold_49_9470474 "1/1" "0/0" "1/1"
## HiC_scaffold_49_9886007 "0/0" "0/0" "0/0"
## HiC_scaffold_49_12592113 "0/0" NA "1/1"
## HiC_scaffold_49_12741575 "0/0" NA "1/1"
## HiC_scaffold_49_15135019 "1/1" "1/1" "1/1"
## HiC_scaffold_49_25906219 NA "0/0" "1|1"
## HiC_scaffold_49_26614199 "0/0" NA "0/0"
## HiC_scaffold_49_26655554 NA "0|1" "0/1"
## HiC_scaffold_49_37568341 "0/0" "0/0" "0/0"
## HiC_scaffold_49_37568353 "0/0" "0/0" "0/0"
## HiC_scaffold_49_40002255 "0/0" "0/0" "0/0"
## HiC_scaffold_49_40003229 "0/1" "1|1" NA
## HiC_scaffold_49_42966376 NA "0/0" "1|1"
## HiC_scaffold_5_801252 "1/1" "1/1" "1/1"
## HiC_scaffold_5_1446603 "0/0" "1|1" "0/0"
## HiC_scaffold_5_1446611 "0/0" "1|1" "0/0"
## HiC_scaffold_5_1530759 "1/1" "1/1" NA
## HiC_scaffold_5_1539275 "0/0" "0/0" "0/0"
## HiC_scaffold_5_1789576 "0/0" NA "1/1"
## HiC_scaffold_5_1808197 "1/1" "0/0" "0/0"
## HiC_scaffold_5_1808204 "0/0" "1/1" "1/1"
## HiC_scaffold_5_1943895 "1|1" "1|1" NA
## HiC_scaffold_5_1944469 NA "1/1" "1/1"
## HiC_scaffold_5_2857283 NA "1/1" "1/1"
## HiC_scaffold_5_4061378 "0/0" "0/0" "1/1"
## HiC_scaffold_5_4340647 "0/0" "0/0" NA
## HiC_scaffold_5_4435246 "1/1" "0/0" NA
## HiC_scaffold_5_8868783 "0/0" "0/0" "1/1"
## HiC_scaffold_50_4315969 NA "1/1" "0/0"
## HiC_scaffold_50_11652296 "1/1" "0/1" NA
## HiC_scaffold_50_11657309 NA NA "0/1"
## HiC_scaffold_50_15521027 "0/0" "0/0" NA
## HiC_scaffold_50_21050962 "0/0" "0/0" "0/0"
## HiC_scaffold_50_23686202 "1|1" NA "1|1"
## HiC_scaffold_50_27393462 "1|1" "0/0" "0|1"
## HiC_scaffold_50_42586883 "0/0" "0/0" "1/1"
## HiC_scaffold_50_45087211 "0/0" NA NA
## HiC_scaffold_50_49796550 NA "1/1" "1/1"
## HiC_scaffold_50_54383367 "1|1" NA "1|1"
## HiC_scaffold_50_63318678 "0/0" "1/1" "1/1"
## HiC_scaffold_51_3521000 "1/1" "0/0" NA
## HiC_scaffold_51_4681905 NA NA "0/1"
## HiC_scaffold_51_6305599 NA "0/0" NA
## HiC_scaffold_51_8530818 "0/0" "1|1" "0/0"
## HiC_scaffold_51_11653312 "0/0" "0|1" "0/1"
## HiC_scaffold_51_13138547 "1/1" "1/1" "1/1"
## HiC_scaffold_51_14457091 "0/0" "0/0" "0/0"
## HiC_scaffold_51_15512668 "0/0" NA "1/1"
## HiC_scaffold_51_17816346 "1/1" "0/1" "1/1"
## HiC_scaffold_51_19997934 "1|1" NA "1|1"
## HiC_scaffold_51_19997936 "1|1" NA "1|1"
## HiC_scaffold_51_20870773 "0/0" "1/1" "0/0"
## HiC_scaffold_51_26660104 "1|1" NA "1|1"
## HiC_scaffold_51_40727521 "1|1" "1|1" NA
## HiC_scaffold_51_40892841 "1/1" NA "0/0"
## HiC_scaffold_51_41717519 "1/1" NA "1/1"
## HiC_scaffold_51_42547638 NA "0/0" "1/1"
## HiC_scaffold_52_3335804 "0/0" "0/0" "0/0"
## HiC_scaffold_52_4149130 NA "1/1" "1/1"
## HiC_scaffold_52_6893679 NA "0/0" NA
## HiC_scaffold_52_13155416 NA "1/1" "0/0"
## HiC_scaffold_52_13155437 NA "1|1" "0/0"
## HiC_scaffold_52_13155442 NA "1|1" "0/0"
## HiC_scaffold_52_14885688 "0/0" "0/0" "0/0"
## HiC_scaffold_52_14895078 "1/1" "1/1" NA
## HiC_scaffold_52_15141791 "1/1" NA "1/1"
## HiC_scaffold_52_15743051 "0/0" "0/0" "1|1"
## HiC_scaffold_52_15760201 "0/1" "1/1" "1/1"
## HiC_scaffold_52_15834589 "0/0" "0/0" "0/0"
## HiC_scaffold_52_15841769 "0/0" "0/0" "0/0"
## HiC_scaffold_52_15862421 "0/0" "0/0" NA
## HiC_scaffold_52_15970970 "0/2" NA "0/0"
## HiC_scaffold_52_16275237 NA "0/0" "0/0"
## HiC_scaffold_52_16275240 "0/0" "1|1" NA
## HiC_scaffold_52_16275290 "0/0" NA "1|1"
## HiC_scaffold_52_16524164 "0/0" NA "0/0"
## HiC_scaffold_52_16524572 NA "1/1" "1/1"
## HiC_scaffold_52_16525647 "0/0" "0/0" "0/1"
## HiC_scaffold_52_16637047 "0/0" "0/0" "0/0"
## HiC_scaffold_52_17202127 NA NA "0/1"
## HiC_scaffold_52_17207724 "1|1" "1/1" "1/1"
## HiC_scaffold_52_17508820 "0/0" NA "0/0"
## HiC_scaffold_52_17547593 "0/0" "0/1" "0/0"
## HiC_scaffold_52_17551239 NA "1/1" "1/1"
## HiC_scaffold_52_17560696 "0/0" "0|1" "0/0"
## HiC_scaffold_52_17560699 "0/0" "0|1" "0/0"
## HiC_scaffold_52_17741250 NA "1/1" "1/1"
## HiC_scaffold_52_17742260 "0/0" "0|1" "0/0"
## HiC_scaffold_52_18340578 "0/0" NA "0/0"
## HiC_scaffold_52_18415911 "0/0" NA "1/1"
## HiC_scaffold_52_22189517 "1/1" "0/1" NA
## HiC_scaffold_52_22526592 "0/0" "0/0" NA
## HiC_scaffold_52_26393471 "0/0" "0/0" NA
## HiC_scaffold_52_26799380 NA "0/0" "1/1"
## HiC_scaffold_52_31871931 "0/1" "1|1" "1/1"
## HiC_scaffold_52_31874283 NA "1/1" "0|1"
## HiC_scaffold_52_31874287 NA "0/0" "0|1"
## HiC_scaffold_52_32161053 "1|1" "0|1" "1|1"
## HiC_scaffold_52_33165557 "0/0" "0/1" NA
## HiC_scaffold_52_33897620 NA "0/0" "1/1"
## HiC_scaffold_52_34763156 NA "1|1" "0/0"
## HiC_scaffold_52_34763171 NA "0/1" "0/0"
## HiC_scaffold_52_35174755 "0/0" "1|1" NA
## HiC_scaffold_52_35608453 NA NA "1/1"
## HiC_scaffold_52_35608470 NA NA "1|1"
## HiC_scaffold_52_39464728 NA "1|1" "0|1"
## HiC_scaffold_52_42141354 "1|1" "0/0" "1|1"
## HiC_scaffold_52_44675725 "1/1" "1/1" "1/1"
## HiC_scaffold_52_49935920 "1/1" "0/0" "1/1"
## HiC_scaffold_53_21789524 NA "0/0" NA
## HiC_scaffold_53_25168042 "0/0" NA "1/1"
## HiC_scaffold_53_26398989 NA "0|1" "1|1"
## HiC_scaffold_53_26398992 NA "0|1" "1|1"
## HiC_scaffold_53_26398994 NA "0|1" "1|1"
## HiC_scaffold_53_26549665 "1/1" "1/1" "1/1"
## HiC_scaffold_53_29227676 NA NA "0|1"
## HiC_scaffold_53_31250349 "1|1" "1|1" "1/1"
## HiC_scaffold_54_530581 NA "1|1" "1|1"
## HiC_scaffold_54_794095 "1|1" "1|1" "1|1"
## HiC_scaffold_54_1171109 "0/0" "0/0" NA
## HiC_scaffold_54_1378956 NA "0/1" "0/0"
## HiC_scaffold_54_1380539 "1/1" "0/1" "1/1"
## HiC_scaffold_54_3045015 NA "1/1" NA
## HiC_scaffold_54_3185987 "1/1" "1/1" "0/0"
## HiC_scaffold_54_4401098 "0/1" "0/0" NA
## HiC_scaffold_54_5595903 "1|1" "0/0" NA
## HiC_scaffold_54_5595921 "1|1" "1|1" "0/0"
## HiC_scaffold_54_5595928 "1|1" "1|1" "0/0"
## HiC_scaffold_54_5595949 "1/1" "1/1" "0/0"
## HiC_scaffold_54_6649662 "0/0" NA "0/0"
## HiC_scaffold_54_8036734 "1|1" NA "1|1"
## HiC_scaffold_54_9206614 NA "1/1" "1/1"
## HiC_scaffold_54_35913192 "0/0" "0/0" "0/0"
## HiC_scaffold_54_35913282 NA NA "0|1"
## HiC_scaffold_54_35913283 NA NA "0|1"
## HiC_scaffold_55_1260491 NA "1/1" NA
## HiC_scaffold_55_3254027 "0/0" "0/1" NA
## HiC_scaffold_55_3281985 "1|1" "0/0" "0/0"
## HiC_scaffold_55_5409544 "1/1" NA "1/1"
## HiC_scaffold_55_5411094 "1|1" NA "1|1"
## HiC_scaffold_55_5411115 "1/1" NA "1|1"
## HiC_scaffold_55_18121799 "1/1" NA "1/1"
## HiC_scaffold_55_19605809 "1|1" "0/1" NA
## HiC_scaffold_55_19605817 "1|1" "1|1" "0/0"
## HiC_scaffold_55_19605821 "1|1" "1|1" NA
## HiC_scaffold_55_20195204 NA "1/1" NA
## HiC_scaffold_55_20886967 "0/0" "1/1" "1/1"
## HiC_scaffold_55_23222937 "0/1" "0/0" NA
## HiC_scaffold_55_23626331 "0/0" "0/0" NA
## HiC_scaffold_55_24539590 "1/1" "0/0" "0/1"
## HiC_scaffold_55_24585939 "1/1" "0/0" "0/0"
## HiC_scaffold_55_34174151 "0/0" "1/1" "1/1"
## HiC_scaffold_56_17874332 NA "0/0" "0/0"
## HiC_scaffold_56_18635259 "0/0" NA NA
## HiC_scaffold_56_23654344 "0/1" "0/0" "0/0"
## HiC_scaffold_56_35850533 "0/0" "0/0" "1/1"
## HiC_scaffold_56_35850539 "0/0" "0/0" "0/0"
## HiC_scaffold_56_40813556 "1/1" "0/0" NA
## HiC_scaffold_56_53211633 "0/0" NA "0/0"
## HiC_scaffold_56_60070829 "0/0" NA "0/0"
## HiC_scaffold_56_73286017 NA NA "1/1"
## HiC_scaffold_56_73829442 "0/0" "0/0" NA
## HiC_scaffold_56_73829443 "0/0" "0/0" NA
## HiC_scaffold_56_76060304 "0/0" "0/0" "0/0"
## HiC_scaffold_57_25306408 "1/1" NA "0/0"
## HiC_scaffold_57_29222385 "1/1" "0/1" "0|0"
## HiC_scaffold_57_29592432 "1/1" "0/0" NA
## HiC_scaffold_57_31472698 "1|1" NA "0/0"
## HiC_scaffold_57_32371742 "0/0" NA "0/0"
## HiC_scaffold_57_36495072 "0/0" "1/1" "0/0"
## HiC_scaffold_57_37286264 NA "0/0" "0/0"
## HiC_scaffold_57_38537415 NA "0/1" "1|1"
## HiC_scaffold_57_45438854 "1|1" "1/2" "1|1"
## HiC_scaffold_57_52856874 "0/1" NA "1/1"
## HiC_scaffold_57_53575355 "0/1" "0/1" "0/0"
## HiC_scaffold_57_55856783 "1/1" NA "1/1"
## HiC_scaffold_58_1362614 "1/1" "0/0" "1/1"
## HiC_scaffold_58_1432845 "1/1" "1/1" "1/1"
## HiC_scaffold_58_1541720 "0/0" "0/0" "0/0"
## HiC_scaffold_58_2777120 "1/1" "1/1" "0/1"
## HiC_scaffold_58_2973169 NA "1/1" "1/1"
## HiC_scaffold_58_3243043 "0/0" "0/0" "1/1"
## HiC_scaffold_58_4035282 "0/0" "0/0" NA
## HiC_scaffold_58_5442157 "0/0" "0/1" "0/0"
## HiC_scaffold_58_8004631 "0/0" "0/1" "0/0"
## HiC_scaffold_58_8058998 "0/0" "0/0" "0/0"
## HiC_scaffold_58_8932837 "0/0" "0/0" "1/1"
## HiC_scaffold_58_14814944 NA "0/0" "0/0"
## HiC_scaffold_58_15639988 "0/0" "0/0" "0/0"
## HiC_scaffold_58_15707198 NA NA "0/1"
## HiC_scaffold_58_15707258 "1/1" "0/0" "0/1"
## HiC_scaffold_58_15710623 "0/1" "0/0" "0/0"
## HiC_scaffold_58_19155063 "1|1" "1|1" "0/0"
## HiC_scaffold_58_20224050 "0/0" "1/1" "1/1"
## HiC_scaffold_58_38475355 "0/0" "1/1" "1/1"
## HiC_scaffold_59_3979055 "0/0" "0/0" "0/0"
## HiC_scaffold_59_5071810 "0/1" NA NA
## HiC_scaffold_59_5349936 "0/0" "1/1" "0/0"
## HiC_scaffold_59_5350114 NA NA "0/0"
## HiC_scaffold_59_7738302 "1/1" "0/0" NA
## HiC_scaffold_59_7738351 "1/1" "0/0" "1/1"
## HiC_scaffold_59_7958561 "1|1" "0/0" "0/0"
## HiC_scaffold_59_9273798 "1/1" "1|1" "0/0"
## HiC_scaffold_59_50928099 NA "0/0" "0/0"
## HiC_scaffold_59_52960060 "0/0" NA "0/0"
## HiC_scaffold_6_10569023 NA "1/1" "0/0"
## HiC_scaffold_6_10711445 NA NA "0/0"
## HiC_scaffold_6_13209200 "1|1" "0/0" "1|1"
## HiC_scaffold_6_13213107 "0/0" "1/1" "1/1"
## HiC_scaffold_6_13311684 NA "0/0" "0/0"
## HiC_scaffold_6_15670783 NA "1|1" "1|1"
## HiC_scaffold_6_19111232 "0/0" "0/0" NA
## HiC_scaffold_6_32805498 "1/1" NA "0/0"
## HiC_scaffold_6_38793174 "0/0" "0/0" NA
## HiC_scaffold_6_41092101 "0/0" "0/1" "1|1"
## HiC_scaffold_6_41342933 "0/0" "1/1" "0/1"
## HiC_scaffold_6_47594508 NA "0/0" "0/0"
## HiC_scaffold_60_70878 "1|1" NA "1|1"
## HiC_scaffold_60_99549 "1|1" NA NA
## HiC_scaffold_60_201823 NA NA "1/1"
## HiC_scaffold_60_712969 "1|1" "1|1" "1|1"
## HiC_scaffold_60_744783 "1/1" "1|1" "0/0"
## HiC_scaffold_60_744788 "0/0" "0/0" "1/1"
## HiC_scaffold_60_22142128 "0/0" "0/0" NA
## HiC_scaffold_60_27599770 "1/1" "1/1" "1/1"
## HiC_scaffold_60_30608878 NA "0/0" "0/0"
## HiC_scaffold_60_32657324 "0/0" NA "1/1"
## HiC_scaffold_60_32672580 "1/1" "1/1" "1/1"
## HiC_scaffold_60_38856893 "1/1" "0/0" "0/0"
## HiC_scaffold_60_39028335 NA "1/1" NA
## HiC_scaffold_60_40296869 "1/1" "0/0" "0/1"
## HiC_scaffold_60_42775723 "1/1" "0/0" "1|1"
## HiC_scaffold_60_44687906 NA "0/0" "0/0"
## HiC_scaffold_60_44804601 NA "1/1" "0/1"
## HiC_scaffold_60_53696867 NA "0/0" "0/0"
## HiC_scaffold_60_53696868 NA "0/0" "0/0"
## HiC_scaffold_60_60651515 "0|1" "0/0" "0/0"
## HiC_scaffold_60_70678462 "0|0" "1/1" "1/1"
## HiC_scaffold_61_2205328 NA NA "0/0"
## HiC_scaffold_61_2491706 NA "1/1" "1|1"
## HiC_scaffold_61_4009916 "0/0" "0/0" "0/0"
## HiC_scaffold_61_4062917 NA "0/0" "0/0"
## HiC_scaffold_61_4122763 "1|1" "1|1" "1|1"
## HiC_scaffold_61_4216461 "0/0" "1/1" "1/1"
## HiC_scaffold_61_4325053 "1/1" NA "0/0"
## HiC_scaffold_61_9004838 "1|1" "1|1" "1|1"
## HiC_scaffold_61_14635083 NA NA "0/0"
## HiC_scaffold_62_1128608 NA "1/1" "1/1"
## HiC_scaffold_62_11335200 "2|2" "0|1" NA
## HiC_scaffold_62_18828476 "0/0" NA NA
## HiC_scaffold_62_21548870 NA NA NA
## HiC_scaffold_62_23103274 NA NA NA
## HiC_scaffold_62_25793456 "0/0" "0/0" "0/0"
## HiC_scaffold_62_25887474 "0/0" "1/1" NA
## HiC_scaffold_62_28516096 "1|1" "1|1" "0|1"
## HiC_scaffold_62_28516099 "1|1" "1|1" "0|1"
## HiC_scaffold_62_28818725 "0/0" "1|1" "0/0"
## HiC_scaffold_62_28818729 "1/1" "0/0" "1/1"
## HiC_scaffold_62_45207353 "0/0" "0/0" "0/1"
## HiC_scaffold_63_3092269 NA "1/1" NA
## HiC_scaffold_63_3977940 "0/0" "1/1" "0/0"
## HiC_scaffold_63_4084937 "0/0" NA "1/1"
## HiC_scaffold_63_4196326 "0/1" "0/0" NA
## HiC_scaffold_63_6262453 NA NA "0/0"
## HiC_scaffold_63_6350204 "1/1" "1/1" "0/0"
## HiC_scaffold_63_6458794 "0/0" NA "0/0"
## HiC_scaffold_64_9162978 "0/0" "0/0" "2/2"
## HiC_scaffold_64_16876561 "0/1" "0|1" "0/0"
## HiC_scaffold_64_17543009 "1/1" "0/0" "1/1"
## HiC_scaffold_64_18925356 NA NA NA
## HiC_scaffold_64_19133050 "1|1" NA "0/0"
## HiC_scaffold_64_19627769 "0/0" "0/0" "1|1"
## HiC_scaffold_64_20477250 "0/0" NA "0/0"
## HiC_scaffold_64_22816677 "1/1" "0/0" "0/0"
## HiC_scaffold_64_22954654 "0/0" "0|1" "1|1"
## HiC_scaffold_64_22954658 "0/0" "0|1" "1|1"
## HiC_scaffold_64_22954682 "0/0" "1/1" "1/1"
## HiC_scaffold_65_6829971 NA "0/0" "1/1"
## HiC_scaffold_65_8071102 "1|1" "0/0" NA
## HiC_scaffold_65_9023979 NA "0/0" "0/1"
## HiC_scaffold_65_9839671 "0/0" NA "0/0"
## HiC_scaffold_65_10404778 "0/0" "0/0" "0/1"
## HiC_scaffold_65_11327791 NA NA "1/1"
## HiC_scaffold_65_11332104 "1/1" "0/0" "0/0"
## HiC_scaffold_65_34823822 NA "0/0" "0/0"
## HiC_scaffold_65_51418017 NA NA "1/1"
## HiC_scaffold_65_54053979 NA "0/1" "0/0"
## HiC_scaffold_65_57110875 "1|1" "0/0" NA
## HiC_scaffold_66_15615363 "1|1" NA "0/0"
## HiC_scaffold_66_15672090 "0/0" NA "1/1"
## HiC_scaffold_66_17903445 "0/0" "0/0" "0|1"
## HiC_scaffold_66_18298629 NA NA NA
## HiC_scaffold_66_19730676 "1|1" "0/1" NA
## HiC_scaffold_66_23688768 "0/0" "0/1" "1/1"
## HiC_scaffold_66_26614535 "0/1" "0/0" "0/0"
## HiC_scaffold_66_27445665 "1/1" "1/1" NA
## HiC_scaffold_66_29457165 NA "0|1" "1|1"
## HiC_scaffold_66_29457180 "1/1" "1/1" "1/1"
## HiC_scaffold_66_30116287 "1|1" "1|1" "1|1"
## HiC_scaffold_66_31603503 "0/0" NA "0/0"
## HiC_scaffold_66_33261460 NA "1|1" NA
## HiC_scaffold_66_34138981 "0/0" "0/0" NA
## HiC_scaffold_66_34139020 NA "1/1" NA
## HiC_scaffold_66_34142862 "1/1" NA "1/1"
## HiC_scaffold_67_1404390 "0/0" "1/1" NA
## HiC_scaffold_67_28493665 "0/0" "0/0" NA
## HiC_scaffold_67_30243885 NA "0/0" "0/0"
## HiC_scaffold_67_31511806 "0/0" NA "0/0"
## HiC_scaffold_67_34638092 "1/1" "0/0" "0/0"
## HiC_scaffold_67_37534720 "1/1" NA "1|1"
## HiC_scaffold_67_39679546 "1/1" "0/1" "1/1"
## HiC_scaffold_67_39854918 "0|1" "1/1" "0/0"
## HiC_scaffold_67_39860738 NA "1/1" "0/0"
## HiC_scaffold_67_40331656 "1/1" NA "0/0"
## HiC_scaffold_67_40824747 "1|1" "1|1" "1|1"
## HiC_scaffold_68_3438132 NA NA "1|1"
## HiC_scaffold_68_3438133 NA NA "1|1"
## HiC_scaffold_68_11206902 "0/0" NA "0/1"
## HiC_scaffold_68_32770607 "0/0" "1|1" "1|1"
## HiC_scaffold_68_34016823 "0/0" NA NA
## HiC_scaffold_68_34020019 "1/1" "1/1" "0/0"
## HiC_scaffold_68_40296057 "0/0" "0/0" "1|1"
## HiC_scaffold_68_40296059 "0/0" "0/0" "1|1"
## HiC_scaffold_68_65001879 NA NA NA
## HiC_scaffold_69_23311147 "1|1" "2|2" "0/0"
## HiC_scaffold_69_27351303 NA "0/0" "0/0"
## HiC_scaffold_69_29437208 NA "1|1" NA
## HiC_scaffold_69_33699381 "1|1" NA "1|1"
## HiC_scaffold_69_40194698 "0/1" "1/1" "1/1"
## HiC_scaffold_69_48273575 NA "1/1" "0/0"
## HiC_scaffold_69_48348026 "0/0" "0/0" "1/1"
## HiC_scaffold_69_48348034 "0/0" "0/0" "0/0"
## HiC_scaffold_69_49563252 "0/0" "1|1" "0/1"
## HiC_scaffold_69_49593952 NA NA "0/0"
## HiC_scaffold_69_49859037 "0/0" NA NA
## HiC_scaffold_69_51271238 "1/1" NA "0/0"
## HiC_scaffold_69_51529836 "1/1" NA NA
## HiC_scaffold_69_57313650 "1/1" "0/0" "0/0"
## HiC_scaffold_69_57359194 NA "0/0" NA
## HiC_scaffold_6951_523650 "1/1" "0/0" "0/0"
## HiC_scaffold_6951_897126 "1|1" "1|1" "1|1"
## HiC_scaffold_6951_1134482 "0/1" "1|1" NA
## HiC_scaffold_6951_2484960 NA "0/0" "0/1"
## HiC_scaffold_6951_3301273 "0/0" "0/0" "0/0"
## HiC_scaffold_6951_3314609 NA NA "0/1"
## HiC_scaffold_6951_3945993 NA "1|1" NA
## HiC_scaffold_6958_218293 "0/0" "0/0" NA
## HiC_scaffold_6958_449143 "1/1" "0/0" "0/0"
## HiC_scaffold_7_351023 "0/0" "0/0" "0/0"
## HiC_scaffold_7_488024 "0/0" "0/0" "0|1"
## HiC_scaffold_7_492663 "0/0" "1/1" "1/1"
## HiC_scaffold_7_693567 "0/0" "1|1" "1|1"
## HiC_scaffold_7_2379128 "0/0" "0/0" NA
## HiC_scaffold_7_3087721 "0/0" NA "0/0"
## HiC_scaffold_7_3394880 NA "0/0" "0/1"
## HiC_scaffold_7_22247106 NA NA "0/0"
## HiC_scaffold_70_4632611 "0/0" NA "1|1"
## HiC_scaffold_70_14042778 "0/0" "0/0" "0/0"
## HiC_scaffold_71_410844 NA "0/0" "0/0"
## HiC_scaffold_71_1753451 "0/0" "1/1" "0/0"
## HiC_scaffold_71_2283682 "0/0" NA "0|1"
## HiC_scaffold_71_3439685 NA "0/0" "0|2"
## HiC_scaffold_71_17850462 "0/0" "0/0" "0/1"
## HiC_scaffold_71_20588314 "0/0" "0/0" "1/1"
## HiC_scaffold_71_25465351 "1|1" "0|1" "0/0"
## HiC_scaffold_71_25465352 "1|1" "0|1" "0/0"
## HiC_scaffold_71_26356062 NA "1/1" "0/0"
## HiC_scaffold_72_11785096 "0/1" "1/1" "0/0"
## HiC_scaffold_72_17285854 NA NA "1/1"
## HiC_scaffold_72_23704999 NA "0/0" NA
## HiC_scaffold_72_24465318 "0/0" "0/1" NA
## HiC_scaffold_72_30457277 NA "0/0" "0/1"
## HiC_scaffold_72_32068649 NA "0/0" NA
## HiC_scaffold_72_35058295 "0/0" "1/1" "0/0"
## HiC_scaffold_72_36024997 "1|1" NA NA
## HiC_scaffold_72_37135067 "0/0" "0/0" "0/0"
## HiC_scaffold_72_38410141 "1|1" NA "0/0"
## HiC_scaffold_72_38448056 "1|1" NA NA
## HiC_scaffold_72_41412511 "1/1" NA NA
## HiC_scaffold_73_2192629 "1|1" NA "1|1"
## HiC_scaffold_73_2920208 "1|1" "1|1" "1|1"
## HiC_scaffold_73_4522493 "1/1" NA "1/1"
## HiC_scaffold_73_4748625 NA "0/0" "1/1"
## HiC_scaffold_73_5839336 "1/1" "1/1" NA
## HiC_scaffold_73_9338582 "0/0" "0/0" "0/0"
## HiC_scaffold_73_27393859 "0/0" "1/1" "0/0"
## HiC_scaffold_74_14235619 "0/0" "0/0" "1/1"
## HiC_scaffold_74_14515598 "1|1" "1/1" NA
## HiC_scaffold_74_15116121 "0/0" "0/0" "0|1"
## HiC_scaffold_74_17233613 "0/0" "0/0" "1/1"
## HiC_scaffold_74_17725340 "0/0" NA NA
## HiC_scaffold_74_18418135 NA "0/0" "0/0"
## HiC_scaffold_74_18418138 NA "0/0" "0/0"
## HiC_scaffold_74_21254425 NA NA "1/1"
## HiC_scaffold_74_22261065 NA "1/1" "1/1"
## HiC_scaffold_74_47132519 "0|1" "1|1" "0/0"
## HiC_scaffold_74_50979096 "1/1" "0/0" "0/0"
## HiC_scaffold_74_51060549 "0/0" "0/0" "0/0"
## HiC_scaffold_74_53256803 NA NA "0/0"
## HiC_scaffold_74_55464169 "0/0" NA "1/1"
## HiC_scaffold_74_55515512 NA "0/0" NA
## HiC_scaffold_74_55999260 "0/0" "0/0" "0/0"
## HiC_scaffold_74_57404902 "1|1" "1|1" "0/0"
## HiC_scaffold_74_58181927 "0/0" "1|1" "1|1"
## HiC_scaffold_74_58198600 NA "0/0" NA
## HiC_scaffold_74_63060195 "0/0" NA NA
## HiC_scaffold_75_5345466 NA "1|1" "1|1"
## HiC_scaffold_75_5346522 "0/0" "0/0" NA
## HiC_scaffold_75_5346535 "0/0" "0/0" NA
## HiC_scaffold_75_9850973 NA "1/1" "1/1"
## HiC_scaffold_76_27149820 NA "0|1" "0/0"
## HiC_scaffold_76_31582908 "0/0" "0/0" "0/0"
## HiC_scaffold_76_31792815 "0/0" "0/0" "0/1"
## HiC_scaffold_76_35352820 "1/1" "0/0" "0/0"
## HiC_scaffold_76_57782171 NA "1/1" NA
## HiC_scaffold_76_59862401 "1|1" NA NA
## HiC_scaffold_76_61095594 "0/0" NA NA
## HiC_scaffold_76_65496128 "0/0" "1/1" "0/1"
## HiC_scaffold_76_68965847 NA "0/0" "1/1"
## HiC_scaffold_76_68966411 "1/1" "0/0" "1/1"
## HiC_scaffold_76_69823482 "0/0" "1|1" NA
## HiC_scaffold_76_73343841 "1/1" "0/0" "0/0"
## HiC_scaffold_77_3598274 "0/0" NA "1/1"
## HiC_scaffold_77_6982137 "0/1" "1/1" "1/1"
## HiC_scaffold_77_11021994 "1/1" "1/1" NA
## HiC_scaffold_77_13608165 "0/0" NA "0/0"
## HiC_scaffold_77_16888594 "0/0" "0|1" "0/0"
## HiC_scaffold_77_16888623 "1|1" "0/1" "0|1"
## HiC_scaffold_77_16889448 "0/1" "0/1" NA
## HiC_scaffold_77_39784685 "1|1" "0/0" NA
## HiC_scaffold_77_44375866 "1/1" "0/0" "0/0"
## HiC_scaffold_77_45385370 "0/0" "0/0" "0/0"
## HiC_scaffold_78_5719919 "1/1" "1/1" "0/0"
## HiC_scaffold_78_11353297 NA NA "0/0"
## HiC_scaffold_78_27316392 NA "1/1" "0/0"
## HiC_scaffold_78_48124809 "0/0" "0/0" "0/0"
## HiC_scaffold_78_48124826 "1/1" "0/1" "1/1"
## HiC_scaffold_78_48126176 "0/0" NA "0/0"
## HiC_scaffold_78_48279096 "1/1" "1/1" NA
## HiC_scaffold_78_48434558 NA "0/1" NA
## HiC_scaffold_78_49759181 "1|1" NA "0/1"
## HiC_scaffold_78_49759192 "0/0" NA "0/0"
## HiC_scaffold_78_49759215 "1/1" "1/1" "1/1"
## HiC_scaffold_78_51364025 NA "1/1" "1/1"
## HiC_scaffold_78_55395445 "0/0" "0/1" "0/0"
## HiC_scaffold_78_59610866 "0/0" NA "1/1"
## HiC_scaffold_78_62136661 "0/0" "0/0" "0/0"
## HiC_scaffold_79_1643780 NA "0/0" "0/0"
## HiC_scaffold_79_2519178 NA "1/1" "1/1"
## HiC_scaffold_79_2858100 NA "1/1" NA
## HiC_scaffold_79_3922454 NA "0/0" "0/0"
## HiC_scaffold_79_4127878 "1|1" NA "1|1"
## HiC_scaffold_79_4543693 "0/1" "0/1" "1/1"
## HiC_scaffold_79_11507678 "0/0" "0/1" NA
## HiC_scaffold_79_12618812 "1|1" NA NA
## HiC_scaffold_79_14185404 "0/0" "1|1" "1|1"
## HiC_scaffold_79_17120237 "0/0" "1/1" "0/0"
## HiC_scaffold_79_17120254 "0/0" "1/1" "0/0"
## HiC_scaffold_79_35551507 NA "0/0" "0/0"
## HiC_scaffold_79_35551543 NA "0/0" "0/0"
## HiC_scaffold_79_38927423 NA NA NA
## HiC_scaffold_79_42623307 NA "1|1" "1|1"
## HiC_scaffold_79_43179786 "0/0" NA NA
## HiC_scaffold_79_43180099 "0/0" "0/1" "1/1"
## HiC_scaffold_79_43828078 NA "0/0" "1|1"
## HiC_scaffold_79_43872513 "1/1" NA "1/1"
## HiC_scaffold_79_44627215 "1/1" "1/1" "1/1"
## HiC_scaffold_79_50772769 NA "0|1" "0|1"
## HiC_scaffold_79_55468575 NA "0/0" "1/1"
## HiC_scaffold_79_55816114 "0/0" NA "0/0"
## HiC_scaffold_79_59915784 "0/0" "0/0" "1/1"
## HiC_scaffold_79_60165298 "0/0" "1/1" NA
## HiC_scaffold_79_60165305 NA "0/0" "0/0"
## HiC_scaffold_79_69145556 "0/0" "0/1" "0/0"
## HiC_scaffold_79_70208305 "0/0" NA "1|1"
## HiC_scaffold_79_73412292 "0/0" NA NA
## HiC_scaffold_79_73416663 "1|1" "1|1" "0/0"
## HiC_scaffold_79_73416688 "0/0" "1|1" NA
## HiC_scaffold_79_76863102 "0/0" "0/1" NA
## HiC_scaffold_79_81279649 "0/0" NA "0/0"
## HiC_scaffold_79_81499990 "1/1" "1/1" "1/1"
## HiC_scaffold_79_82319836 "1|1" "1|1" "0/0"
## HiC_scaffold_79_82319849 "1|1" "1|1" NA
## HiC_scaffold_79_83163707 NA NA "0/0"
## HiC_scaffold_79_86283512 "0/0" "1/1" NA
## HiC_scaffold_79_87123758 NA NA "1|1"
## HiC_scaffold_79_88362889 NA "0/1" "0/1"
## HiC_scaffold_79_88599431 NA NA "1/1"
## HiC_scaffold_79_89322919 "0/0" NA "0/0"
## HiC_scaffold_79_89331918 "0/0" "0/0" NA
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## HiC_scaffold_80_37507516 "0/0" "1/1" NA
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## HiC_scaffold_81_40271294 NA "1/1" NA
## HiC_scaffold_81_41096427 NA "0/0" "1|1"
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## HiC_scaffold_81_45063428 "1|1" NA "1|1"
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## HiC_scaffold_81_47170397 NA NA "1|1"
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## HiC_scaffold_81_48105216 "1|1" "1|1" "0/1"
## HiC_scaffold_81_48932070 "1/1" NA "0/0"
## HiC_scaffold_81_54050146 NA NA "1/1"
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## HiC_scaffold_82_26144442 NA "1/1" "1/1"
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## HiC_scaffold_82_28907834 NA "0/0" NA
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## HiC_scaffold_82_34413800 "1/1" NA NA
## HiC_scaffold_82_36173035 NA "0/1" NA
## HiC_scaffold_82_40539273 "1/1" "0/1" "1/1"
## HiC_scaffold_82_41470256 "1/1" "0/1" NA
## HiC_scaffold_83_23993605 "0/1" NA "0/0"
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## HiC_scaffold_83_43423618 "0/0" "1|1" "0/0"
## HiC_scaffold_83_46920654 "1/1" "0/0" "1/1"
## HiC_scaffold_83_46934197 "1/1" "1|1" "0|1"
## HiC_scaffold_84_356301 "1/1" "0/0" NA
## HiC_scaffold_84_5761817 NA "0/1" "0/0"
## HiC_scaffold_84_5769022 NA "0/0" "1|1"
## HiC_scaffold_84_6288130 "0/0" "0/0" NA
## HiC_scaffold_84_6288141 "1|1" NA NA
## HiC_scaffold_84_6288147 "1|1" NA NA
## HiC_scaffold_84_7069238 NA "1|1" "1|1"
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## HiC_scaffold_84_14659391 "1/1" NA "1/1"
## HiC_scaffold_84_16302752 "0/1" "0/1" "2|2"
## HiC_scaffold_84_18463244 NA "0/1" "0/0"
## HiC_scaffold_84_22909575 "0/0" "1|1" "0/0"
## HiC_scaffold_84_29275266 "0/0" "1/1" "1/1"
## HiC_scaffold_84_31184610 "1/1" "1/1" "1/1"
## HiC_scaffold_84_33093169 "0/0" "0/0" "0/0"
## HiC_scaffold_84_37675180 NA NA "0/0"
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## HiC_scaffold_84_51231025 NA "0/0" NA
## HiC_scaffold_85_9792207 "0|1" "0/0" "0/0"
## HiC_scaffold_85_11784233 NA "0/1" NA
## HiC_scaffold_85_11911022 "1|1" "0/0" NA
## HiC_scaffold_85_11911142 "0/1" NA NA
## HiC_scaffold_85_11913828 "0/0" "0/0" "1/1"
## HiC_scaffold_85_11913831 NA "1/1" "0/0"
## HiC_scaffold_85_12353081 NA "1/1" "0/1"
## HiC_scaffold_85_12414551 "0/0" NA "2/2"
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## HiC_scaffold_85_13221888 "1/1" NA NA
## HiC_scaffold_85_27008863 "0/0" "0/1" "0/0"
## HiC_scaffold_85_28992264 NA "0/0" "1|1"
## HiC_scaffold_85_28992268 NA "1|1" "1|1"
## HiC_scaffold_85_64310850 "1|1" "1|1" NA
## HiC_scaffold_85_65135112 NA NA "0/0"
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## HiC_scaffold_86_1949664 "1|1" "1|1" "0/0"
## HiC_scaffold_86_5340423 "0/1" "1/1" NA
## HiC_scaffold_86_5483991 "0/0" "1|1" NA
## HiC_scaffold_86_8928469 "1/1" NA NA
## HiC_scaffold_86_23727924 NA NA "1|1"
## HiC_scaffold_86_24825818 NA NA NA
## HiC_scaffold_86_25333718 "1/1" "1/1" "1/1"
## HiC_scaffold_86_29668168 "0/0" NA "0/2"
## HiC_scaffold_86_30914243 NA "1|1" NA
## HiC_scaffold_86_32040320 "1|1" "0/0" "0/0"
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## HiC_scaffold_86_32125061 "0/1" "1/1" NA
## HiC_scaffold_86_32144758 "1/1" "0/0" "1/1"
## HiC_scaffold_86_32153692 "1/1" "1/1" NA
## HiC_scaffold_86_32534129 "1/1" NA "1/1"
## HiC_scaffold_86_32605768 "0/0" "1|1" "1|1"
## HiC_scaffold_86_36355399 NA "0/0" "1/1"
## HiC_scaffold_86_36357265 "1/1" NA NA
## HiC_scaffold_87_1253643 "0/0" NA "0/1"
## HiC_scaffold_87_2137958 "1/1" "1/1" "0|1"
## HiC_scaffold_87_3980100 NA "1/1" "1/1"
## HiC_scaffold_87_4395923 NA "0/0" "0/0"
## HiC_scaffold_87_5489328 "0/0" "1|1" "1|1"
## HiC_scaffold_87_6300441 "0/0" "0/1" "0/1"
## HiC_scaffold_87_16306904 "0/1" NA "1/1"
## HiC_scaffold_87_44780945 NA "1|1" "0/0"
## HiC_scaffold_88_5584327 NA "1|1" "1/1"
## HiC_scaffold_88_7104630 "0/0" "1|1" "1|1"
## HiC_scaffold_88_7104631 "0/0" "1|1" "1|1"
## HiC_scaffold_88_7104638 "1|1" "1|1" "1|1"
## HiC_scaffold_88_7104639 "0/0" "0/0" "0/0"
## HiC_scaffold_88_7104640 "0/0" "1|1" "1|1"
## HiC_scaffold_88_7479340 NA "0/0" "0|1"
## HiC_scaffold_88_8773607 "1|1" NA "0/0"
## HiC_scaffold_88_9883678 NA "1|1" "1|1"
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## HiC_scaffold_88_19365116 NA "1/1" "0/0"
## HiC_scaffold_88_20477349 "0/0" "0/0" "1/1"
## HiC_scaffold_88_20557885 NA "0/0" NA
## HiC_scaffold_89_675045 "0/0" "0/0" "1/1"
## HiC_scaffold_89_2815845 NA NA "0/0"
## HiC_scaffold_89_2843940 "0/0" "1/1" NA
## HiC_scaffold_89_3018830 "1/1" "1/1" NA
## HiC_scaffold_89_13745506 "1/1" "0/0" "0/0"
## HiC_scaffold_89_30006907 "0/0" "0/0" NA
## HiC_scaffold_89_36509388 "0/0" NA NA
## HiC_scaffold_89_38703735 "0/0" "0/1" "0/1"
## HiC_scaffold_89_38764895 NA NA "0/0"
## HiC_scaffold_89_42052609 "0/1" "0/0" "0/0"
## HiC_scaffold_89_42054991 "0/0" "0/0" NA
## HiC_scaffold_89_44306958 "1/1" "1|1" "0/1"
## HiC_scaffold_89_44338206 "0/0" "0/0" "0/0"
## HiC_scaffold_89_45298973 "0/0" NA NA
## HiC_scaffold_9_3529921 "1/1" "1/1" "1/1"
## HiC_scaffold_9_5660454 NA "1|1" "0/0"
## HiC_scaffold_9_5660461 NA "1|1" "1|1"
## HiC_scaffold_9_5854070 NA NA "0/0"
## HiC_scaffold_9_6142415 "0/0" "0/0" "0/0"
## HiC_scaffold_9_6142436 "0/0" "0/0" "0/0"
## HiC_scaffold_9_6143781 "0/1" "0/1" "0/0"
## HiC_scaffold_9_6654825 "0/0" "0/0" "0/0"
## HiC_scaffold_9_7094545 NA "1|1" NA
## HiC_scaffold_9_7100208 NA "0/0" "0/0"
## HiC_scaffold_9_7109988 "1/1" "0/0" "1/1"
## HiC_scaffold_9_7111922 "1|1" "0/0" "1|1"
## HiC_scaffold_9_8235781 "1/1" "1/1" "1/1"
## HiC_scaffold_9_8279558 "1/1" "0/1" "1/1"
## HiC_scaffold_9_15679481 NA "0/0" "0/0"
## HiC_scaffold_9_18082611 "0/0" "0/0" "2/2"
## HiC_scaffold_9_18090830 "0/0" "0/0" "1/1"
## HiC_scaffold_9_30240531 NA "1/1" "1|1"
## HiC_scaffold_90_10418696 NA "1/1" "1/1"
## HiC_scaffold_90_11470224 "1/1" NA "1|1"
## HiC_scaffold_90_13593319 "0/1" "0/1" "0/1"
## HiC_scaffold_90_16260161 "1|1" "0/0" NA
## HiC_scaffold_90_22325499 "0/0" NA "0/0"
## HiC_scaffold_90_23574204 "0/0" "0/0" "1/1"
## HiC_scaffold_90_23609908 NA "1|1" NA
## HiC_scaffold_90_23623078 "0/0" NA "1|1"
## HiC_scaffold_90_23626883 NA "0/0" NA
## HiC_scaffold_90_23812663 "1/1" "1/1" "1/1"
## HiC_scaffold_90_25939283 "0/0" NA "0/1"
## HiC_scaffold_90_25985714 "0/0" "0/0" "0/0"
## HiC_scaffold_90_30751272 "0/1" NA "0/0"
## HiC_scaffold_90_31232025 "1|1" "1|1" NA
## HiC_scaffold_90_31245699 "1/1" "0/1" NA
## HiC_scaffold_90_31527975 NA NA "0/0"
## HiC_scaffold_90_31546172 NA NA "0|1"
## HiC_scaffold_90_38511996 "0/0" "0|1" "0|0"
## HiC_scaffold_90_38511999 "0/0" "0|1" "0|0"
## HiC_scaffold_90_38517279 "1/1" "0/0" "0/0"
## HiC_scaffold_90_40624104 "0/0" "0/0" NA
## HiC_scaffold_91_5644765 NA "0|1" NA
## HiC_scaffold_91_5867214 NA "1|1" "1|1"
## HiC_scaffold_91_5867226 NA "1|1" "1|1"
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## HiC_scaffold_91_7871360 "0/0" "0/1" "0/0"
## HiC_scaffold_91_8538014 "1/1" "1/1" "0/0"
## HiC_scaffold_91_13230485 "1|1" "0/0" NA
## HiC_scaffold_91_28696118 NA NA "0/0"
## HiC_scaffold_91_28696625 "0/0" NA "0|1"
## HiC_scaffold_91_42177482 "0/0" "1|1" "0/0"
## HiC_scaffold_91_46813640 "0/0" "0/0" "0/0"
## HiC_scaffold_92_23783035 "0/0" "0/0" NA
## HiC_scaffold_92_23783036 "0/0" "0/0" NA
## HiC_scaffold_92_24712793 "0/0" "0/1" "1/1"
## HiC_scaffold_92_28698258 "0/0" "1/1" "1|1"
## HiC_scaffold_92_40691582 "2/2" "1/1" NA
## HiC_scaffold_92_43967712 NA "0/0" NA
## HiC_scaffold_92_47147572 "0/0" NA NA
## HiC_scaffold_92_49042714 "0|1" "1|1" NA
## HiC_scaffold_92_49042715 "0|1" "1|1" NA
## HiC_scaffold_92_53634002 NA "1/1" "1/1"
## HiC_scaffold_92_58211868 "1|1" "0/0" "0/0"
## HiC_scaffold_92_60114155 "1|1" "0/0" "1|1"
## HiC_scaffold_92_63603483 NA "0/0" NA
## HiC_scaffold_92_64797225 NA "1|1" "0/0"
## HiC_scaffold_92_68367476 "0|1" "0/0" NA
## HiC_scaffold_93_1912167 "0/1" "1/1" "0/0"
## HiC_scaffold_93_2485978 NA "0/0" "0/0"
## HiC_scaffold_93_3227638 NA "0/0" NA
## HiC_scaffold_93_3227641 "0/0" "1|1" NA
## HiC_scaffold_93_13971208 NA "1/1" "1/1"
## HiC_scaffold_93_13987080 "0/0" "0/1" "0/0"
## HiC_scaffold_93_21125468 NA NA "0/1"
## HiC_scaffold_93_21845293 "1/1" "0/0" "0/0"
## HiC_scaffold_93_21845310 "0/0" "1|1" "1/1"
## HiC_scaffold_93_21846342 NA NA "0/0"
## HiC_scaffold_93_21846356 NA NA NA
## HiC_scaffold_93_22589723 "1/1" "0/0" "1/1"
## HiC_scaffold_93_22619278 "1|1" NA "0/0"
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## HiC_scaffold_93_22631266 "1|1" "0|1" "0/0"
## HiC_scaffold_94_3110102 "0/0" "1/1" "0/0"
## HiC_scaffold_94_3205919 "0/1" "0|0" "0/0"
## HiC_scaffold_94_9023846 "0/0" "0/0" NA
## HiC_scaffold_94_11572820 NA "0/0" "1/1"
## HiC_scaffold_94_12368532 "0/1" "1/1" "1/1"
## HiC_scaffold_94_42179418 "0/0" "0/0" "0/0"
## HiC_scaffold_94_42179519 "0/0" "1/1" "0/1"
## HiC_scaffold_94_51646206 "0/0" "0/0" "0/0"
## HiC_scaffold_94_52781289 "0/1" "1/1" "1/1"
## HiC_scaffold_94_53790035 NA "0/1" "1/1"
## HiC_scaffold_94_53792738 "1|1" "1/1" NA
## HiC_scaffold_94_56768905 "1|1" "1|1" "1|1"
## HiC_scaffold_946_81276 NA "0/0" "0/0"
## HiC_scaffold_95_3189690 NA "1/1" "1/1"
## HiC_scaffold_95_4397298 "1|1" NA "0/0"
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## HiC_scaffold_95_10641411 "0/0" NA "0/0"
## HiC_scaffold_95_10949821 NA NA "0/0"
## HiC_scaffold_95_12993394 "0|1" NA NA
## HiC_scaffold_95_15515793 "0/0" NA "0/0"
## HiC_scaffold_95_15608785 NA "0/0" "0/0"
## HiC_scaffold_95_15609137 NA NA "0/0"
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## HiC_scaffold_95_22656165 "0/0" NA NA
## HiC_scaffold_95_25885727 "1/1" "0/0" "0/0"
## HiC_scaffold_96_10460019 "0/0" NA "0/1"
## HiC_scaffold_96_27155785 NA "0/1" "0/0"
## HiC_scaffold_96_37939434 "0|1" "0/1" "0/0"
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## HiC_scaffold_96_51116511 "1/1" "0/0" "1/1"
## HiC_scaffold_96_51915040 "1|1" "0/0" "0/0"
## HiC_scaffold_96_52681287 NA "0/0" "0/0"
## HiC_scaffold_96_53276519 "0/1" "0/0" NA
## HiC_scaffold_97_1736926 "0/0" "0/0" "0/0"
## HiC_scaffold_97_1736994 "0/0" "0/0" "0/0"
## HiC_scaffold_97_3863543 "1/1" "1/1" "0/0"
## HiC_scaffold_97_4200445 "0/1" "0/0" "0/1"
## HiC_scaffold_97_4799162 "0/0" "0/0" "0/0"
## HiC_scaffold_97_5027892 "1/1" NA NA
## HiC_scaffold_97_8007933 "0/0" NA "0/0"
## HiC_scaffold_97_17997210 "0/0" NA NA
## HiC_scaffold_97_18604647 "0/0" "1/1" NA
## HiC_scaffold_97_20239636 NA "0/0" "0/0"
## HiC_scaffold_98_15154096 "0/0" NA "0/0"
## HiC_scaffold_98_22342667 "1|1" "0/0" "0|1"
## HiC_scaffold_98_22634293 NA "1|1" "1|1"
## HiC_scaffold_98_22634294 NA "1|1" "1|1"
## HiC_scaffold_98_22721138 "1/1" NA "1|1"
## HiC_scaffold_98_22869378 "0/1" NA "0/0"
## HiC_scaffold_98_24108405 "1|1" "0/0" NA
## HiC_scaffold_98_27359592 "1|1" "0/0" "1/1"
## HiC_scaffold_98_28549834 "0/1" "1/1" "1/1"
## HiC_scaffold_98_28867520 "1|1" "0|1" "1|1"
## HiC_scaffold_98_28867524 "1|1" "0|2" "1|1"
## HiC_scaffold_98_29431717 NA "1|1" "1/1"
## HiC_scaffold_98_29675109 NA NA "0/0"
## HiC_scaffold_99_1163244 NA "1/1" "1/1"
## HiC_scaffold_99_1451611 "0/0" "0/0" "0/0"
## HiC_scaffold_99_2021961 NA "0/0" "0/0"
## HiC_scaffold_99_5134392 "1/1" NA "0/1"
## HiC_scaffold_99_5239109 "1/1" "1/1" NA
## HiC_scaffold_99_6917738 NA "0/0" NA
## HiC_scaffold_99_11221970 NA NA NA
## HiC_scaffold_99_25982503 "1/1" "0/1" "0/1"
## Tank_20_Crab_1 Tank_20_Crab_2 Tank_20_Crab_3
## HiC_scaffold_1_2523394 "0/1" "0/0" "0/0"
## HiC_scaffold_1_2542157 NA "0/1" "0/0"
## HiC_scaffold_1_2647806 "1/1" NA "0/0"
## HiC_scaffold_1_2970226 "1|1" "0/1" "0/0"
## HiC_scaffold_1_3329447 "0/0" "0/0" "2|2"
## HiC_scaffold_1_3795100 NA "1|1" "0/0"
## HiC_scaffold_10_2221345 NA "0/0" "1/1"
## HiC_scaffold_10_2299490 "0/0" "0/0" "1|1"
## HiC_scaffold_10_2565301 "0/0" "0/1" "1/1"
## HiC_scaffold_10_3864355 "0/0" "1/1" "0/0"
## HiC_scaffold_10_4319900 NA "0/0" "0/0"
## HiC_scaffold_10_4319907 NA "0/0" "0/0"
## HiC_scaffold_10_5404579 "0/0" "1/1" "0/1"
## HiC_scaffold_10_5843373 "0/0" "0/0" "0/0"
## HiC_scaffold_100_854947 "1|1" "0/0" "0/0"
## HiC_scaffold_100_1070817 "0|1" "1/1" "0/0"
## HiC_scaffold_100_2002094 "0/0" "2|2" "0/0"
## HiC_scaffold_100_2002097 "0/0" "1|1" "0/0"
## HiC_scaffold_100_2010331 "1|1" "0/1" NA
## HiC_scaffold_100_5186498 NA "1/1" "1/1"
## HiC_scaffold_100_5828477 NA "0/0" "0/0"
## HiC_scaffold_100_6470419 "0/0" "0/0" "1|1"
## HiC_scaffold_100_6739225 "0/0" "1/1" "0/0"
## HiC_scaffold_100_6739258 NA "1|1" "0/0"
## HiC_scaffold_100_6739264 NA "1|1" "0/0"
## HiC_scaffold_100_6907177 "1|1" "0/0" "1/1"
## HiC_scaffold_100_8384481 "0/0" "1|1" NA
## HiC_scaffold_100_8384495 "0/0" "1/1" NA
## HiC_scaffold_100_9451470 NA "0/2" "0/0"
## HiC_scaffold_100_10464574 "1/1" "0/0" "1/1"
## HiC_scaffold_100_11934792 "1|1" "1/1" "1|1"
## HiC_scaffold_100_11980177 "1|1" "1/1" "1/1"
## HiC_scaffold_100_18465760 "0/0" "0/0" "0|1"
## HiC_scaffold_100_18465762 "0/0" "0/0" "0|1"
## HiC_scaffold_100_18466205 NA "0/0" NA
## HiC_scaffold_100_31738115 "1/1" NA NA
## HiC_scaffold_100_44227362 "0/0" "0/0" "0/0"
## HiC_scaffold_101_12808961 "0|1" "1|1" "1|1"
## HiC_scaffold_101_13897149 NA "1/1" "1/1"
## HiC_scaffold_101_18337279 "0/0" "1/1" NA
## HiC_scaffold_101_20800167 "1/1" "0/1" "1/1"
## HiC_scaffold_102_2260041 "0/0" "1/1" "0/0"
## HiC_scaffold_102_8734519 "1|1" "0/0" "0/0"
## HiC_scaffold_102_10233999 NA "0/0" "0/0"
## HiC_scaffold_102_11446042 "1/1" "0/0" "0/0"
## HiC_scaffold_102_15918694 "0/1" "0/1" NA
## HiC_scaffold_102_15935667 "0/0" "0/0" "1/1"
## HiC_scaffold_102_17442643 "1/1" "0|1" "1/1"
## HiC_scaffold_102_17608969 "0/0" "0/0" "0/0"
## HiC_scaffold_102_20180185 "1/1" "0/1" "1/1"
## HiC_scaffold_102_24788723 "1/1" "0/1" "0/0"
## HiC_scaffold_102_25423729 "1|1" "1|1" "1|1"
## HiC_scaffold_102_39755142 "0/1" "1/1" "1/1"
## HiC_scaffold_102_52046978 "0/1" "0/0" "1/1"
## HiC_scaffold_1027_34152 "0/1" "1/1" "0/0"
## HiC_scaffold_103_601715 NA "0/1" NA
## HiC_scaffold_103_2891384 "1/1" "0/0" "0/0"
## HiC_scaffold_103_8191270 "2|2" "0/1" "0/1"
## HiC_scaffold_103_9521272 "1/1" "1/1" "0/1"
## HiC_scaffold_103_14768909 "1|1" "1|1" "0/0"
## HiC_scaffold_103_19312119 "1|1" "1|1" NA
## HiC_scaffold_103_21284866 "0/0" "1/1" "1/1"
## HiC_scaffold_103_31428453 "1|1" "1|1" "1|1"
## HiC_scaffold_103_42567396 "0/1" "0/1" "0/1"
## HiC_scaffold_103_45921571 "0/0" "0/0" NA
## HiC_scaffold_103_45921573 "0/0" "0/0" NA
## HiC_scaffold_103_49592022 NA "1|1" "0/1"
## HiC_scaffold_103_49620132 "0|1" "1|1" "0/0"
## HiC_scaffold_103_50440915 "0/0" "1|1" "1/1"
## HiC_scaffold_103_51944137 "0/1" "0/0" "1/1"
## HiC_scaffold_103_54308582 "0/0" "0/1" "0/0"
## HiC_scaffold_103_54424067 "0/0" "1|1" "0/0"
## HiC_scaffold_103_56932900 NA "1/1" "1/1"
## HiC_scaffold_103_57470264 "1|1" "0|1" "1|1"
## HiC_scaffold_104_7771140 "1/1" "1/1" "1/1"
## HiC_scaffold_104_9103028 "0/1" "0/0" "1/1"
## HiC_scaffold_104_10633168 "0/0" "1/1" "1/1"
## HiC_scaffold_104_18917031 "1/1" NA "0/0"
## HiC_scaffold_104_20851902 "1/1" "1/1" "0/0"
## HiC_scaffold_104_24451803 "1/1" "0/1" NA
## HiC_scaffold_104_28597688 "0/1" "0/1" "1/1"
## HiC_scaffold_104_40927999 "0/0" "0/0" "1/1"
## HiC_scaffold_104_46490074 "0/1" NA "0/0"
## HiC_scaffold_104_49759053 "0/1" "0/0" "0/0"
## HiC_scaffold_104_57267896 "0/1" "0/1" NA
## HiC_scaffold_104_62570010 "0/0" "0/1" "0/0"
## HiC_scaffold_11_32804173 "0/0" "1/1" "0/0"
## HiC_scaffold_11_34516508 "0|1" "1|1" "1|1"
## HiC_scaffold_11_35332996 "0/0" "0/1" "1/1"
## HiC_scaffold_11_35904027 "0/1" "1/1" "1/1"
## HiC_scaffold_11_41539793 NA "1/1" "0/0"
## HiC_scaffold_11_41604080 "1|1" "1/1" "1|1"
## HiC_scaffold_11_42855323 NA "1/1" "0/0"
## HiC_scaffold_11_45339409 "0|1" NA "0/0"
## HiC_scaffold_11_45339410 "0/1" NA "0/0"
## HiC_scaffold_11_47544035 "0/0" "1/1" "0/0"
## HiC_scaffold_12_7515164 NA "1/1" NA
## HiC_scaffold_12_12640100 NA "0/0" "0/0"
## HiC_scaffold_12_12826705 "1|1" "1|1" "1|1"
## HiC_scaffold_12_14899285 "1/1" "0/0" NA
## HiC_scaffold_12_17465672 "0/1" "0/0" NA
## HiC_scaffold_12_22770710 "1|1" "1|1" "1|1"
## HiC_scaffold_12_32318964 "1|1" "0/0" "1|1"
## HiC_scaffold_12_35136373 "0|1" "0/0" "1|1"
## HiC_scaffold_12_40687860 "0/0" "0/0" NA
## HiC_scaffold_13_2938168 "0/1" "1/1" "1/1"
## HiC_scaffold_13_20350974 "0/1" "1/1" "1/1"
## HiC_scaffold_13_27759554 "0/0" "0/0" "0/0"
## HiC_scaffold_13_28146828 "0|0" "0/0" "0/0"
## HiC_scaffold_13_28146830 "0|0" "0/0" "0/0"
## HiC_scaffold_13_28925343 NA "1/1" NA
## HiC_scaffold_13_31913129 "1/1" "0/0" NA
## HiC_scaffold_13_32078924 NA "1|1" "1|1"
## HiC_scaffold_13_33864805 "1/1" "0/0" "1/1"
## HiC_scaffold_13_34892542 "0/0" "0/1" "1/1"
## HiC_scaffold_13_34893103 "1/1" "1/1" "0/0"
## HiC_scaffold_13_35762551 "0|1" "0/0" "0|1"
## HiC_scaffold_13_35881745 "1/1" "1/1" "0/1"
## HiC_scaffold_13_35881749 "0/0" "0/0" "0/0"
## HiC_scaffold_14_3843214 "0/0" "0/0" "1/1"
## HiC_scaffold_14_25884262 "0/0" NA "0/2"
## HiC_scaffold_14_27050415 "1/1" "1/1" NA
## HiC_scaffold_14_27118495 "1/1" NA "1/1"
## HiC_scaffold_14_27277222 "0|2" "1/1" "0/0"
## HiC_scaffold_14_29215814 "0/0" "1|1" "0/1"
## HiC_scaffold_15_2460398 "1|1" "0|1" NA
## HiC_scaffold_15_2462980 "1/1" "0/1" "0/0"
## HiC_scaffold_15_2467289 "1|1" "1/1" "0/1"
## HiC_scaffold_15_5669141 "1/1" "0/1" "0/1"
## HiC_scaffold_15_13700694 "0/0" "0/0" "0/0"
## HiC_scaffold_15_17825275 "1|1" "1|1" "1|1"
## HiC_scaffold_15_19938475 "0/1" "1/1" "0/0"
## HiC_scaffold_15_23865956 "1|1" "1|1" "0/0"
## HiC_scaffold_15_28837774 "1|1" "0/1" NA
## HiC_scaffold_15_28837810 "0/0" "0/1" "0/0"
## HiC_scaffold_15_28837823 "0/0" NA "1/1"
## HiC_scaffold_15_28837835 "0/0" "1|1" "0/0"
## HiC_scaffold_15_28837841 "0/0" "1|1" "1|1"
## HiC_scaffold_15_28837854 "1/1" "1|1" "1|1"
## HiC_scaffold_15_34827832 "0/0" "0/1" NA
## HiC_scaffold_15_34893807 "0/0" "0/0" "0/0"
## HiC_scaffold_15_35327348 "0/1" NA NA
## HiC_scaffold_15_42161112 "0|1" "0/0" "1|1"
## HiC_scaffold_15_42164926 "0/0" "0/0" "1|1"
## HiC_scaffold_15_42164946 "0/0" "1/1" "1/1"
## HiC_scaffold_15_46289572 "0/0" "1/1" "1/1"
## HiC_scaffold_15_50591576 "0|1" "1|1" "0/0"
## HiC_scaffold_15_50759128 "0/1" "1/1" "0/0"
## HiC_scaffold_15_51188336 "1|1" "1|1" NA
## HiC_scaffold_15_54726640 NA "0/0" "1/1"
## HiC_scaffold_15_54788235 "1/1" "0/0" "1/1"
## HiC_scaffold_15_56162375 "0/0" "1|1" "1|1"
## HiC_scaffold_15_61091106 "0/0" "0/1" "0/0"
## HiC_scaffold_15_61464359 "0/0" "1/1" "1/1"
## HiC_scaffold_15_61510386 "0/0" "0/0" "1/1"
## HiC_scaffold_15_62309788 "1|1" "0/0" NA
## HiC_scaffold_15_62309793 "1|1" "0/0" NA
## HiC_scaffold_15_62771254 "1/1" "0/0" "0/0"
## HiC_scaffold_15_63493927 "0/0" "1/1" "1/1"
## HiC_scaffold_15_64997502 "0/0" "0/0" "0/0"
## HiC_scaffold_15_65007865 NA "1|1" "1|1"
## HiC_scaffold_15_65007879 NA "1|1" "1|1"
## HiC_scaffold_15_66038529 "1/1" "0/1" "0/0"
## HiC_scaffold_15_69811281 "1/1" "1/1" "1/1"
## HiC_scaffold_16_14205925 "1/1" "0/0" NA
## HiC_scaffold_16_30404047 "0/0" NA NA
## HiC_scaffold_16_57413288 "0/0" "0|1" NA
## HiC_scaffold_16_63687578 "0/0" "0/0" "1|1"
## HiC_scaffold_16_74138787 "0/1" "0/0" NA
## HiC_scaffold_16_74140106 NA "0/0" "1/1"
## HiC_scaffold_16_76276015 "0/0" "0/0" "1/1"
## HiC_scaffold_17_11390873 "0/0" "0|1" "1|1"
## HiC_scaffold_17_12551128 "0/0" "1/1" "1/1"
## HiC_scaffold_17_16615612 "0/0" "0/0" "0/0"
## HiC_scaffold_17_18838093 "0/0" "0/1" "0/0"
## HiC_scaffold_17_22801072 "1/1" "0/1" "0/0"
## HiC_scaffold_17_23788599 "0/1" "0/0" "1/1"
## HiC_scaffold_17_29383895 "1/1" "0/0" "0/0"
## HiC_scaffold_17_29618771 "1/1" "1/1" "0/0"
## HiC_scaffold_17_29976139 "1/1" "0/1" "1/1"
## HiC_scaffold_17_31107213 NA "1/1" "1/1"
## HiC_scaffold_17_32493792 "0/1" "0/0" "0/0"
## HiC_scaffold_17_33732050 NA "0/1" "0/1"
## HiC_scaffold_17_33801314 NA "1|1" "0/0"
## HiC_scaffold_17_34081889 NA "0/1" NA
## HiC_scaffold_18_227565 "1|1" "0/0" "0/0"
## HiC_scaffold_18_1213486 "0/1" "1/1" "1/1"
## HiC_scaffold_18_1701312 NA NA "0/0"
## HiC_scaffold_18_3506437 "1/1" "0/1" "1/1"
## HiC_scaffold_18_6304978 NA "1/1" NA
## HiC_scaffold_18_6351493 "0/0" "1/1" "1/1"
## HiC_scaffold_18_6358009 "0/0" "1/1" "0/0"
## HiC_scaffold_18_10770701 "0/0" "1/1" "0/0"
## HiC_scaffold_18_13342858 "0/1" "1/1" "1/1"
## HiC_scaffold_18_20045832 "0/0" "2|2" "0/0"
## HiC_scaffold_18_22682683 "0/0" "0/0" "1/1"
## HiC_scaffold_18_26337790 "1|1" "0/0" NA
## HiC_scaffold_18_48929148 "0/0" NA "0/0"
## HiC_scaffold_18_51490626 "1/1" "0/0" "0/0"
## HiC_scaffold_18_53723137 "1/1" "0/1" "1/1"
## HiC_scaffold_18_54496637 "1|1" "1|1" NA
## HiC_scaffold_18_55294388 "1/1" "1/1" "1/1"
## HiC_scaffold_19_279726 "0/1" NA NA
## HiC_scaffold_19_6426572 "0/0" "1/1" "1/1"
## HiC_scaffold_19_6575887 "0/0" "1|1" "1|1"
## HiC_scaffold_19_7755254 "0/0" "0/0" "1/1"
## HiC_scaffold_19_9301421 "0/0" "0/0" "0/0"
## HiC_scaffold_19_9357388 "1|1" "1|1" "0/0"
## HiC_scaffold_19_9778841 "1|1" "1/1" "1/1"
## HiC_scaffold_19_10928976 "1|1" "0/0" "1|1"
## HiC_scaffold_19_10928980 "1|1" "0/0" "1|1"
## HiC_scaffold_19_10928982 "0/0" "1|1" "0/0"
## HiC_scaffold_19_11106347 "0/0" "0/1" "0/0"
## HiC_scaffold_19_11590139 "0/1" "0/0" NA
## HiC_scaffold_19_11665300 "0/1" "0/1" "1/1"
## HiC_scaffold_19_14793640 "0/0" "0/1" "0/0"
## HiC_scaffold_19_22112743 "0/0" "0/1" "0/1"
## HiC_scaffold_19_25473671 "1/1" NA "1/1"
## HiC_scaffold_19_25473692 "0/1" NA "1/1"
## HiC_scaffold_19_28110829 "0/0" "1|1" "1|1"
## HiC_scaffold_19_28465002 NA "1/1" "1/1"
## HiC_scaffold_19_28465167 "0/0" "0/1" "0/0"
## HiC_scaffold_19_30106869 "1|1" "1|1" NA
## HiC_scaffold_19_52538858 "1/1" "1/1" "1/1"
## HiC_scaffold_19_52596196 "0/0" "1/1" "0/0"
## HiC_scaffold_19_53482993 "1/1" "0/1" NA
## HiC_scaffold_19_54312637 "1/1" "1/1" "0/0"
## HiC_scaffold_19_59345841 "0/0" "1|1" "0/0"
## HiC_scaffold_2_3296144 "1|1" "1|1" "1|1"
## HiC_scaffold_2_3418589 "1/1" NA "0/0"
## HiC_scaffold_2_3864060 NA "0|1" "1/1"
## HiC_scaffold_2_4104755 "0|1" "0/0" "0|2"
## HiC_scaffold_2_4104758 "0/0" "0/0" "0|2"
## HiC_scaffold_2_8316721 "0/1" "0/0" "0/1"
## HiC_scaffold_2_9098999 "1/1" "0/1" "0/0"
## HiC_scaffold_2_10457537 "0/0" "0/0" "0/0"
## HiC_scaffold_2_19048125 "0/1" "0/1" "1/1"
## HiC_scaffold_2_21748201 "1/1" "1/1" "1/1"
## HiC_scaffold_2_33187764 "1|1" "0/0" "1|1"
## HiC_scaffold_2_33187770 "1|1" "0/0" "1|1"
## HiC_scaffold_2_33187959 "1/1" "0/1" "1/1"
## HiC_scaffold_2_41603929 "0/0" "0/1" NA
## HiC_scaffold_2_52233191 NA "1/1" "0/0"
## HiC_scaffold_2_52400748 "1/1" "1|1" "1/1"
## HiC_scaffold_2_52403793 "0|1" "0/1" "1/1"
## HiC_scaffold_2_52799130 "0/0" NA "0/1"
## HiC_scaffold_20_10332897 "0/0" "0/1" "0/1"
## HiC_scaffold_20_17198418 NA NA "0/0"
## HiC_scaffold_20_17915398 "1|1" "1|1" "1|1"
## HiC_scaffold_20_18872955 "1/1" NA NA
## HiC_scaffold_20_19055301 "1/1" "1/1" "0/0"
## HiC_scaffold_20_19150094 NA "0/1" "0/0"
## HiC_scaffold_20_20651022 "0/1" "0/0" "1|1"
## HiC_scaffold_20_22651296 "0/0" "0/1" "1/1"
## HiC_scaffold_21_2009156 NA "1|1" NA
## HiC_scaffold_21_2435648 "0/0" "1/1" "0/0"
## HiC_scaffold_21_7164210 NA "0/0" "0/0"
## HiC_scaffold_21_9786512 "1/1" "0/1" NA
## HiC_scaffold_21_12424922 "0|1" "1/1" "1/1"
## HiC_scaffold_21_17966833 "1/1" "1/1" "1/1"
## HiC_scaffold_21_19025429 "1/1" "0/0" "0/0"
## HiC_scaffold_21_20058318 "0/0" "0/1" "0|1"
## HiC_scaffold_21_20562855 "0|1" "0|1" NA
## HiC_scaffold_21_20661860 "0/0" "0/1" "0/1"
## HiC_scaffold_21_20895395 "0/0" NA "1|1"
## HiC_scaffold_21_21158811 "1|1" "0/0" "1|1"
## HiC_scaffold_21_22250857 "1/1" "0/1" "0/1"
## HiC_scaffold_21_22250866 "0/0" "0/0" "0/0"
## HiC_scaffold_21_22257737 "1/1" "1/1" "1|1"
## HiC_scaffold_21_22644667 "0|1" "1|1" "1|1"
## HiC_scaffold_21_22644673 "0|1" "1|1" "1|1"
## HiC_scaffold_21_22666888 "1/1" "0/0" "0/0"
## HiC_scaffold_21_23905416 "1|1" NA "0/0"
## HiC_scaffold_21_23981651 "0/0" "1|1" "1|1"
## HiC_scaffold_21_24287068 "0/1" "0/0" "1|1"
## HiC_scaffold_21_30798434 "0/1" "1|1" "0/0"
## HiC_scaffold_21_35006232 "0/0" "0/1" "1/1"
## HiC_scaffold_21_35779294 "0/1" "0/1" "0/0"
## HiC_scaffold_22_124910 "1/1" "1/1" "0/1"
## HiC_scaffold_22_751023 "1|1" "1/1" "0/0"
## HiC_scaffold_22_1042644 "1|1" "0|1" "0|1"
## HiC_scaffold_22_1044708 "1/1" "1/1" NA
## HiC_scaffold_22_2174911 "0/0" "1|1" "0/0"
## HiC_scaffold_22_3431122 "1|1" "1|1" "0/0"
## HiC_scaffold_22_3446787 "1|1" "1|1" "0/0"
## HiC_scaffold_22_3451756 "0/0" "1/1" "0|1"
## HiC_scaffold_22_3720435 "0/1" "1/1" "1/1"
## HiC_scaffold_22_4065466 "0/0" "0/0" "1|1"
## HiC_scaffold_22_4739889 "0/0" "2/2" "0/0"
## HiC_scaffold_22_4918263 "1|1" "1|1" "1|1"
## HiC_scaffold_22_5750008 "1/1" "1/1" "1/1"
## HiC_scaffold_22_5769942 "0/0" "0/0" "1/1"
## HiC_scaffold_22_28264522 "0/1" "0/0" "0/0"
## HiC_scaffold_22_28265115 "1/1" NA "0/0"
## HiC_scaffold_22_29205851 "1/1" "1/1" "1/1"
## HiC_scaffold_22_29822340 "1/1" "1/1" "1/1"
## HiC_scaffold_22_30797357 NA "0/1" "0|1"
## HiC_scaffold_22_32042610 "1|1" "1|1" "1|1"
## HiC_scaffold_23_11215327 "1/1" "1/1" NA
## HiC_scaffold_23_27081333 "0/0" "1/1" "0|1"
## HiC_scaffold_23_28672255 "0/1" "0/0" "0/1"
## HiC_scaffold_23_29218828 "1/1" "1/1" "0/0"
## HiC_scaffold_23_32528768 "0/0" "1|1" "0/0"
## HiC_scaffold_23_32669383 NA "0/0" "0/0"
## HiC_scaffold_23_33199663 "0/1" "0/1" "1/1"
## HiC_scaffold_23_33245843 "0/0" "0/0" "0/0"
## HiC_scaffold_23_40824545 "0|1" "0|1" "0|1"
## HiC_scaffold_23_41504669 "1/1" "1/1" "1/1"
## HiC_scaffold_24_16622654 "1/1" "0/1" NA
## HiC_scaffold_24_16622681 "1/1" "0/1" "0/0"
## HiC_scaffold_24_19851560 "0/0" "0|1" NA
## HiC_scaffold_24_20590563 "1/1" "1/1" "1/1"
## HiC_scaffold_24_27745754 "0/0" "1/1" "0/0"
## HiC_scaffold_24_28763699 "1|1" "1|1" NA
## HiC_scaffold_24_28763703 "1|1" "0/1" NA
## HiC_scaffold_25_4135969 "0/0" "0/0" "1/1"
## HiC_scaffold_25_4201677 NA "0/0" "0/0"
## HiC_scaffold_25_5872831 NA "1/1" NA
## HiC_scaffold_25_6879627 "0/0" "0/0" "1/1"
## HiC_scaffold_25_8172813 NA NA "0/0"
## HiC_scaffold_25_9969507 "0/0" "0/0" "0/0"
## HiC_scaffold_25_10691336 NA "0/0" NA
## HiC_scaffold_25_21286462 "0/1" "0/0" NA
## HiC_scaffold_26_4086662 "1/1" "0/0" "0/0"
## HiC_scaffold_26_7539671 "0/0" "0/0" "1|1"
## HiC_scaffold_26_8348511 "1/1" "1/1" NA
## HiC_scaffold_26_9043748 "0/0" "1|1" "1|1"
## HiC_scaffold_26_9045655 "0/0" "0/1" "0/0"
## HiC_scaffold_26_11253181 "0|1" "0/1" NA
## HiC_scaffold_26_17828344 "1/1" "1/1" "1/1"
## HiC_scaffold_26_17932520 NA "1/1" "1/1"
## HiC_scaffold_26_17941459 "1/1" "0/0" "0/0"
## HiC_scaffold_26_17960877 "1/1" NA "0/1"
## HiC_scaffold_26_18284041 "1/1" "0/0" "0/0"
## HiC_scaffold_26_18288701 "0|1" "1|1" NA
## HiC_scaffold_26_18294422 "0/0" "1|1" "1/1"
## HiC_scaffold_26_21307365 "1/1" "0/0" "0/0"
## HiC_scaffold_26_22159924 "1/1" "1/1" "0/1"
## HiC_scaffold_26_22161535 "1/1" "1|2" "0/0"
## HiC_scaffold_26_24794176 "0/1" "0/1" "1/1"
## HiC_scaffold_26_28538113 "0/0" "0/0" "0/0"
## HiC_scaffold_26_29031357 "0|1" "1/1" "0/1"
## HiC_scaffold_26_29163462 "0/1" "1/1" "0/0"
## HiC_scaffold_26_42631018 "0/0" "0/1" "0/0"
## HiC_scaffold_26_42634814 "1/1" "1/1" NA
## HiC_scaffold_26_43483190 NA "0/1" "0/0"
## HiC_scaffold_26_49955889 "1/1" "0/1" "1/1"
## HiC_scaffold_26_58342510 "1|1" NA "0/0"
## HiC_scaffold_27_1496120 "0/0" "0/0" "1|1"
## HiC_scaffold_27_1947057 "0/0" "0/0" "1|1"
## HiC_scaffold_27_2359058 "0/0" "1|1" "1|1"
## HiC_scaffold_27_2699645 "1/1" "1/1" "0/0"
## HiC_scaffold_27_4425475 "1|1" "0|1" "0/0"
## HiC_scaffold_27_7539469 NA "1|1" "1|1"
## HiC_scaffold_27_7777122 "1|1" "0/0" "0/1"
## HiC_scaffold_27_16657070 "0/1" "1/1" "0/0"
## HiC_scaffold_27_24539255 "0/0" NA NA
## HiC_scaffold_27_34642359 "1|1" "1|1" "0/0"
## HiC_scaffold_27_34647277 "0/0" NA "2|2"
## HiC_scaffold_27_35380535 "1/1" "1/1" "1/1"
## HiC_scaffold_27_35383230 "0/0" NA "1|1"
## HiC_scaffold_28_21261390 NA "0/0" "1|1"
## HiC_scaffold_28_24490442 NA "0/0" "0/0"
## HiC_scaffold_28_25601927 NA "1/1" "0/1"
## HiC_scaffold_28_31793968 "0/0" "1|1" "1|1"
## HiC_scaffold_28_32126687 "0/0" NA "0/0"
## HiC_scaffold_28_34779518 "0/0" "1/1" "1/1"
## HiC_scaffold_28_36042491 "0/1" "1/1" "0/0"
## HiC_scaffold_28_36692361 "0/0" "0/0" NA
## HiC_scaffold_28_38672993 "0/0" "1|1" "0/0"
## HiC_scaffold_28_39640526 "0/1" "0/0" "0/0"
## HiC_scaffold_28_40169242 "1/1" "0/0" "1/1"
## HiC_scaffold_28_41059640 NA "1|1" "1|1"
## HiC_scaffold_28_42514830 "0/1" "1/1" "1/1"
## HiC_scaffold_28_42601570 "1/1" "0/0" "0/0"
## HiC_scaffold_28_42601585 "0/0" "0/0" "1/1"
## HiC_scaffold_28_43018803 "1/1" "1/1" "1/1"
## HiC_scaffold_28_43036165 "0/0" "1/1" "0/0"
## HiC_scaffold_29_344317 "0/0" "1/1" "0/0"
## HiC_scaffold_29_3811176 "1/1" "1/1" "1|1"
## HiC_scaffold_29_6073993 "0|1" "0|1" "1/1"
## HiC_scaffold_29_6415222 "0/0" "2/2" "0/0"
## HiC_scaffold_29_8224424 NA "0/1" "0/1"
## HiC_scaffold_29_11153624 NA "0/1" "1/1"
## HiC_scaffold_29_11153712 "0/0" "0/1" "1/1"
## HiC_scaffold_29_11167966 "0/0" "1/1" "0/0"
## HiC_scaffold_29_11491468 NA "0/1" "0/0"
## HiC_scaffold_29_12103558 "1|1" "0/0" "1|1"
## HiC_scaffold_29_14279322 "0/0" "0/1" "0/1"
## HiC_scaffold_29_14913907 "0/0" NA "0/0"
## HiC_scaffold_29_16378276 "1/1" "1/1" NA
## HiC_scaffold_29_20635937 "0/0" "0/0" "0/1"
## HiC_scaffold_29_20636787 "0/0" "1/1" "1/1"
## HiC_scaffold_29_22560215 "1/1" "1/1" NA
## HiC_scaffold_29_22561144 "1/1" "0/1" "0/1"
## HiC_scaffold_29_24017849 "0/0" "1/1" "2|2"
## HiC_scaffold_29_31603590 "1/1" "0/0" "0/0"
## HiC_scaffold_3_21670751 "0/0" "0/0" "0/0"
## HiC_scaffold_3_24747014 "0/0" "0/0" "0/1"
## HiC_scaffold_3_27861792 "0/1" "1/1" "0/0"
## HiC_scaffold_3_28057869 "1/1" "1/1" "0/0"
## HiC_scaffold_3_28441436 "0|1" "0/1" "0/1"
## HiC_scaffold_3_28694380 "0/0" "1|1" "0/0"
## HiC_scaffold_3_31361023 "1|1" "0/0" NA
## HiC_scaffold_3_31960572 "0/0" "1|1" "0/0"
## HiC_scaffold_3_32157169 "0/1" "1/1" "1/1"
## HiC_scaffold_3_32159152 "0/0" "0/0" NA
## HiC_scaffold_3_34124237 NA "0/0" "1/1"
## HiC_scaffold_30_14199802 "1/1" "0/0" "0/0"
## HiC_scaffold_30_16052331 "1/1" "1/1" "1/1"
## HiC_scaffold_30_19914075 "0/1" "1/1" "1/1"
## HiC_scaffold_30_20688783 "1/1" "0/0" "1/1"
## HiC_scaffold_30_21446076 "0/0" "0/0" "0/0"
## HiC_scaffold_30_21598563 "1/1" "0/0" "0/0"
## HiC_scaffold_30_22155728 "0/0" "1|1" "0/0"
## HiC_scaffold_31_687411 "0/0" "1/1" NA
## HiC_scaffold_31_3224722 "0/0" "0/1" "1/1"
## HiC_scaffold_31_3574854 NA NA "0/0"
## HiC_scaffold_31_5899551 "1/1" NA "1/1"
## HiC_scaffold_31_5911491 "0/0" "1|1" "0|1"
## HiC_scaffold_31_6297680 "1/1" "0/0" NA
## HiC_scaffold_31_12394016 NA "1|1" "0/0"
## HiC_scaffold_31_12394040 NA "0/0" "1|1"
## HiC_scaffold_31_18612650 "1/1" "0/0" "0/0"
## HiC_scaffold_32_4446859 NA "0/0" "0/0"
## HiC_scaffold_32_5274796 "0/0" "0/0" "0/0"
## HiC_scaffold_32_5275108 "1/1" "1/1" "1/1"
## HiC_scaffold_32_5282358 "0/0" "0/0" "0/0"
## HiC_scaffold_32_5450203 "1|1" "0/0" "1|1"
## HiC_scaffold_32_44200178 "0/1" "1/1" "0/1"
## HiC_scaffold_33_638523 "0/0" "1/1" "0/0"
## HiC_scaffold_33_44489563 "0/1" "0/0" "0/1"
## HiC_scaffold_33_44489988 "1/1" "0/0" "0/0"
## HiC_scaffold_33_47080180 "0/0" "0/0" "0/1"
## HiC_scaffold_33_47495907 "1|1" "1|1" NA
## HiC_scaffold_33_51865876 "1/1" "0/0" "0/1"
## HiC_scaffold_34_1096982 "0/0" "0/0" "0/0"
## HiC_scaffold_34_6091943 "1|1" "1|1" "1|1"
## HiC_scaffold_34_6100160 "0/0" "1|1" "0/0"
## HiC_scaffold_34_24368584 "0/0" "0/0" "0/0"
## HiC_scaffold_35_3233120 "0/0" "0/0" "1/1"
## HiC_scaffold_35_3253574 "1/1" "0/0" "1/1"
## HiC_scaffold_35_5512296 "0/0" "0/1" "0/0"
## HiC_scaffold_35_15114788 "1/1" NA "1/1"
## HiC_scaffold_35_21214090 "0/0" "1/1" "0/0"
## HiC_scaffold_35_21462564 "0/0" "0/0" "0/0"
## HiC_scaffold_35_22746783 "0/0" NA "1/1"
## HiC_scaffold_35_22747085 "0/0" "1|1" "0/0"
## HiC_scaffold_35_23059580 "0/0" NA "0/0"
## HiC_scaffold_35_23158882 "1|1" "1/1" "1/1"
## HiC_scaffold_35_23261143 "1/1" "1/1" "0/1"
## HiC_scaffold_35_24403602 "1/1" "0/0" "1|1"
## HiC_scaffold_35_24403620 "1/1" "1/1" "1|1"
## HiC_scaffold_35_24993986 "1/1" "1/1" "1/1"
## HiC_scaffold_35_24993998 "0/1" "0/0" "0|1"
## HiC_scaffold_36_1538038 "1/1" NA "1/1"
## HiC_scaffold_36_2464728 "1/1" "0/1" "0/0"
## HiC_scaffold_36_5489050 "0/0" "0/1" "0/1"
## HiC_scaffold_36_9673981 NA "0/0" "0/1"
## HiC_scaffold_36_9674127 "1/1" "1/1" "0/0"
## HiC_scaffold_36_9674756 "1/1" "1/1" "0/0"
## HiC_scaffold_36_9676329 "1/1" NA "1/1"
## HiC_scaffold_36_12304516 NA "1|1" "1/1"
## HiC_scaffold_36_12515555 "0|1" NA "0/0"
## HiC_scaffold_36_13092647 "0/0" "1|1" "1|1"
## HiC_scaffold_36_13766994 "0/0" "1/1" "0/0"
## HiC_scaffold_36_14567741 "0/0" "1/1" "1/1"
## HiC_scaffold_36_15530578 "1|1" "1|1" "1|1"
## HiC_scaffold_37_679894 "1/1" "1/1" "1/1"
## HiC_scaffold_37_916693 "1|1" "0|1" "1/1"
## HiC_scaffold_37_928146 "0/1" "0/1" "0/0"
## HiC_scaffold_37_1256768 "0/0" "0/0" "0|1"
## HiC_scaffold_37_1270034 NA "1/1" "0/1"
## HiC_scaffold_37_1770997 "0/0" "0/0" "0/0"
## HiC_scaffold_37_1798298 "1/1" "0/1" NA
## HiC_scaffold_37_2010342 "0/0" "1|1" NA
## HiC_scaffold_37_2141526 "0/1" "0/1" "1/1"
## HiC_scaffold_37_3952190 "0/0" "0/0" "1|1"
## HiC_scaffold_37_3952215 "0/0" "0/0" "1|1"
## HiC_scaffold_37_9915037 "0/1" "0/0" "0/0"
## HiC_scaffold_38_5383430 "1/1" NA "0/0"
## HiC_scaffold_38_5668363 "1/1" "1/1" "0/0"
## HiC_scaffold_38_5879849 "0/0" "0/0" "0/0"
## HiC_scaffold_38_5880155 "1/1" "0/1" NA
## HiC_scaffold_38_10612790 "0/0" "1/1" "1|1"
## HiC_scaffold_38_11940240 "0/1" NA "2|2"
## HiC_scaffold_38_12878826 "1/1" "0/0" NA
## HiC_scaffold_38_12959698 "0/0" "1|1" "0/0"
## HiC_scaffold_38_13087368 "1/1" "1/1" "1/1"
## HiC_scaffold_38_13480648 "1|1" "0/0" "0/0"
## HiC_scaffold_38_13965243 "1|1" NA "1|1"
## HiC_scaffold_38_14089955 "0/0" "0/0" "0|1"
## HiC_scaffold_38_14408072 "1|1" "0/0" "0/0"
## HiC_scaffold_38_14931216 "1/1" "0|1" "0/0"
## HiC_scaffold_38_14978356 "0/0" "0/0" "1|1"
## HiC_scaffold_38_14978367 "0/0" "0/0" "1|1"
## HiC_scaffold_38_15292863 "0/1" NA NA
## HiC_scaffold_38_15306135 "0/0" "1|1" "1|1"
## HiC_scaffold_38_16077506 "0/1" NA "0/0"
## HiC_scaffold_38_16138965 "1/1" "1/1" "1/1"
## HiC_scaffold_38_16226040 "0/1" "1/1" "1/1"
## HiC_scaffold_39_1393769 "1|1" "0/0" "0/0"
## HiC_scaffold_39_2014970 "0/0" "0/0" "0/0"
## HiC_scaffold_39_2014982 "0/0" "0/0" "0/0"
## HiC_scaffold_39_2014985 "0/0" "0/0" "0/0"
## HiC_scaffold_39_2426443 "0/0" NA "0/0"
## HiC_scaffold_39_2485330 NA "1/1" "1/1"
## HiC_scaffold_39_3350506 "1|1" NA "0/0"
## HiC_scaffold_39_5897388 "0/0" "0/0" "0|1"
## HiC_scaffold_39_17631133 NA "0/0" "0/0"
## HiC_scaffold_4_12107187 "0/0" NA "0/0"
## HiC_scaffold_4_18241670 "1|1" "1|1" "1|1"
## HiC_scaffold_4_18241723 "1/1" "1|1" "1|1"
## HiC_scaffold_4_22418566 "1|1" "0/0" "1|1"
## HiC_scaffold_4_27899990 "0/1" "1|1" NA
## HiC_scaffold_4_35575118 "1/1" NA "0/0"
## HiC_scaffold_4_38000967 "0|1" "0/0" "1/1"
## HiC_scaffold_4_50654021 NA NA "1|1"
## HiC_scaffold_40_2243415 "1/1" "0/0" "1/1"
## HiC_scaffold_40_3000572 "0/0" "0/1" "0/0"
## HiC_scaffold_40_3014177 "1|1" "1|1" NA
## HiC_scaffold_40_3027900 "0/0" "0/0" "0/1"
## HiC_scaffold_40_3143834 "0/0" "0/1" "0/0"
## HiC_scaffold_40_3843942 "1|1" "0/0" "0/0"
## HiC_scaffold_40_3847620 "0/0" "1|1" "0/0"
## HiC_scaffold_40_3891007 "0/0" "0/0" NA
## HiC_scaffold_40_3920667 "2/2" "2/2" "2/2"
## HiC_scaffold_40_4177963 "1/1" "0|1" "0/0"
## HiC_scaffold_40_4819107 "0/1" NA "0/1"
## HiC_scaffold_40_4819834 NA "0/0" "0/0"
## HiC_scaffold_40_5788271 "1/1" "0|1" "0/1"
## HiC_scaffold_40_5965269 "1|1" "1|1" "0/0"
## HiC_scaffold_40_6204154 "0/0" "1/1" "0/0"
## HiC_scaffold_40_8387917 "0/0" "0/0" "1|1"
## HiC_scaffold_41_3235384 "0/0" "0/0" "0/0"
## HiC_scaffold_41_3583000 "1/1" "0/0" "0/0"
## HiC_scaffold_41_5334504 "1/1" "1/1" "1/1"
## HiC_scaffold_41_5387631 "1|1" "1|1" "1|1"
## HiC_scaffold_41_6423426 "0/0" "0/1" NA
## HiC_scaffold_41_14359947 "1/1" "1/1" NA
## HiC_scaffold_41_24007593 "0/0" "1|1" NA
## HiC_scaffold_41_26225447 "0/0" "0/1" "0/0"
## HiC_scaffold_41_28626484 "0/0" "0/1" NA
## HiC_scaffold_41_28660620 "1|1" "1|1" "0/0"
## HiC_scaffold_41_31007688 "0/1" "1/1" NA
## HiC_scaffold_42_1131084 "0/0" "1/1" "0/1"
## HiC_scaffold_42_1818523 "0/1" "0/1" "1/1"
## HiC_scaffold_42_2165002 "0/0" "0/0" "0/0"
## HiC_scaffold_42_2711332 "1|1" "0/0" "0/0"
## HiC_scaffold_42_6142699 "1/1" "1/1" "1/1"
## HiC_scaffold_42_6744976 "0/1" "0/1" NA
## HiC_scaffold_42_8066919 "1|1" "1|1" "0/0"
## HiC_scaffold_42_8068292 "0|1" "0/1" "1/1"
## HiC_scaffold_42_12487888 "1|1" "0/1" NA
## HiC_scaffold_42_41366687 "1/1" "1/1" "0/1"
## HiC_scaffold_42_47313337 "0/0" "0/0" "0/0"
## HiC_scaffold_42_47313338 "0/0" "0/0" "0/0"
## HiC_scaffold_42_50784971 "0|1" "0/0" "1|1"
## HiC_scaffold_42_50784977 "0|1" "0/0" "1|1"
## HiC_scaffold_42_50784981 "0/1" "1/1" "0/0"
## HiC_scaffold_42_51916989 "1/1" "1/1" "1/1"
## HiC_scaffold_43_3842003 "1/1" "1/1" "1/1"
## HiC_scaffold_43_14140861 "0/0" "0/1" NA
## HiC_scaffold_43_15053605 "0|1" "1|1" "1/1"
## HiC_scaffold_43_17289945 "0|1" "0/0" "0/0"
## HiC_scaffold_43_29967704 "0/0" "0/1" "1/1"
## HiC_scaffold_43_35745831 "1|1" "1|1" "1|1"
## HiC_scaffold_43_37627949 "1|1" "1/1" "0|1"
## HiC_scaffold_43_37628126 "1/1" "0/1" NA
## HiC_scaffold_43_44017118 "0/0" "0/1" "0/0"
## HiC_scaffold_43_55124138 "0|1" "0|1" "1|1"
## HiC_scaffold_43_60107326 NA "0/1" "1|1"
## HiC_scaffold_43_61359386 "1/1" "0/0" "1/1"
## HiC_scaffold_43_61702593 "0/0" "0|1" "0|1"
## HiC_scaffold_43_61702606 "0/0" "0|1" "0|1"
## HiC_scaffold_43_61702721 "1|1" "0/0" "0/0"
## HiC_scaffold_43_61702738 "0/0" NA "0/0"
## HiC_scaffold_43_62511703 "1|1" "1|1" NA
## HiC_scaffold_43_64069457 "0/0" "1/1" "0/0"
## HiC_scaffold_43_64577269 "1/1" "1/1" "0/1"
## HiC_scaffold_44_1920144 "1|1" "0/0" "1|1"
## HiC_scaffold_44_2148035 "1/1" "0/1" NA
## HiC_scaffold_44_2568167 "1/1" "1/1" "0/1"
## HiC_scaffold_45_4180070 "0/1" "1/1" NA
## HiC_scaffold_45_4797754 "2/2" "2/2" "0/0"
## HiC_scaffold_45_5911123 "0/0" "1|1" "1|1"
## HiC_scaffold_45_6958990 "1/1" "1/1" NA
## HiC_scaffold_45_8516216 NA "1/1" "0/0"
## HiC_scaffold_45_10191213 NA "0/1" "0/1"
## HiC_scaffold_45_12005885 "0/0" "0/1" "1/1"
## HiC_scaffold_45_12006766 "0/0" "0/1" "0/1"
## HiC_scaffold_45_24736172 "0/0" "1/1" "0/0"
## HiC_scaffold_45_24739830 "0/0" "0|1" "0/0"
## HiC_scaffold_46_9691567 "0/0" "1|1" "0/0"
## HiC_scaffold_46_17380257 "0/0" "0/0" "0/0"
## HiC_scaffold_46_18387147 "0/1" "0/0" NA
## HiC_scaffold_46_37092355 "0/0" "0|1" "1/1"
## HiC_scaffold_46_39183624 "1/1" "1/1" "0/0"
## HiC_scaffold_46_39390547 "1/1" "0/0" "0/0"
## HiC_scaffold_46_42964941 "0/0" "1|1" "0/0"
## HiC_scaffold_46_42986653 NA "1/1" NA
## HiC_scaffold_46_52074364 NA "0/1" "1|1"
## HiC_scaffold_46_54255667 "0/1" "1/1" "0/1"
## HiC_scaffold_47_3750532 "0/0" "0/0" "0/1"
## HiC_scaffold_47_3751345 "0/0" NA "0/0"
## HiC_scaffold_47_15400639 "1|1" "1|1" "1|1"
## HiC_scaffold_47_24072414 "1/1" "0/0" "0/0"
## HiC_scaffold_47_25273825 NA "0/0" "0/0"
## HiC_scaffold_48_8752752 NA "0/0" "0/0"
## HiC_scaffold_48_10765920 "0/0" "0/0" "1/1"
## HiC_scaffold_48_16077918 NA "0/0" "0/0"
## HiC_scaffold_48_16077940 NA "1/1" "1/1"
## HiC_scaffold_48_16411609 "0/0" NA "0/1"
## HiC_scaffold_48_19972580 "0/0" "1/1" "0/1"
## HiC_scaffold_48_23493079 "1|1" "0/0" "0/0"
## HiC_scaffold_48_23597210 "0/0" "0/0" "1|1"
## HiC_scaffold_48_24478493 "0/0" NA "0/0"
## HiC_scaffold_48_24881148 "0/0" "1/1" "0/0"
## HiC_scaffold_48_25865723 "1/1" "0/1" "1/1"
## HiC_scaffold_48_25984068 "1|1" "0/0" NA
## HiC_scaffold_48_25989079 "1/1" "0/1" "0/0"
## HiC_scaffold_48_30601375 "0/0" NA "0/0"
## HiC_scaffold_48_31662115 "1/1" "1/1" "1/1"
## HiC_scaffold_48_41971562 "0/0" "0/0" "1/1"
## HiC_scaffold_49_3392801 NA "0/0" "0/0"
## HiC_scaffold_49_6101692 "1/1" "1/1" "1/1"
## HiC_scaffold_49_7996315 "0/0" "0/0" "0/0"
## HiC_scaffold_49_9470474 "0/0" NA "1/1"
## HiC_scaffold_49_9886007 "0/1" "0/0" "1/1"
## HiC_scaffold_49_12592113 "0/0" "1/1" "0/0"
## HiC_scaffold_49_12741575 "0/0" "1/1" "0/0"
## HiC_scaffold_49_15135019 "1/1" "1/1" "1/1"
## HiC_scaffold_49_25906219 "1|1" "0/0" "0/0"
## HiC_scaffold_49_26614199 "1/1" NA "0/1"
## HiC_scaffold_49_26655554 "1/1" "0/1" "0/0"
## HiC_scaffold_49_37568341 "0/0" "1|1" "0/0"
## HiC_scaffold_49_37568353 "0/0" "1|1" "0/0"
## HiC_scaffold_49_40002255 "0/0" "0/0" "0/0"
## HiC_scaffold_49_40003229 NA "0/0" "1|1"
## HiC_scaffold_49_42966376 NA "0/0" "0/0"
## HiC_scaffold_5_801252 "0/1" "0/1" "0/1"
## HiC_scaffold_5_1446603 "1|1" "0|1" "1|1"
## HiC_scaffold_5_1446611 "1|1" "0|1" "1|1"
## HiC_scaffold_5_1530759 "0/0" "1/1" "0/0"
## HiC_scaffold_5_1539275 "0/0" "0/0" "0/0"
## HiC_scaffold_5_1789576 "1|1" "0/0" "0/0"
## HiC_scaffold_5_1808197 "1/1" "0/1" "1/1"
## HiC_scaffold_5_1808204 "0/0" "0/1" "0/0"
## HiC_scaffold_5_1943895 NA "0/1" "1|1"
## HiC_scaffold_5_1944469 "0/0" "1/1" NA
## HiC_scaffold_5_2857283 "0/0" "1/1" "1/1"
## HiC_scaffold_5_4061378 "1/1" "0/0" "0/0"
## HiC_scaffold_5_4340647 "0/0" "0/1" "0/1"
## HiC_scaffold_5_4435246 "0/0" "1/1" NA
## HiC_scaffold_5_8868783 "1/1" "1/1" "0/0"
## HiC_scaffold_50_4315969 "1/1" "0/1" "1/1"
## HiC_scaffold_50_11652296 "1/1" "1/1" "1|1"
## HiC_scaffold_50_11657309 "0/1" "1/1" "0/1"
## HiC_scaffold_50_15521027 "0/1" "0/1" "0/1"
## HiC_scaffold_50_21050962 "1/1" "0/0" "0/0"
## HiC_scaffold_50_23686202 "1|1" NA NA
## HiC_scaffold_50_27393462 "0/0" "1|1" "0/0"
## HiC_scaffold_50_42586883 "0/1" "1/1" "0/0"
## HiC_scaffold_50_45087211 "0/1" "0/1" "0/1"
## HiC_scaffold_50_49796550 "1/1" "1/1" "1/1"
## HiC_scaffold_50_54383367 "0/0" NA "1|1"
## HiC_scaffold_50_63318678 "1/1" "1/1" "1/1"
## HiC_scaffold_51_3521000 "0/1" "0/1" "0/1"
## HiC_scaffold_51_4681905 "0/1" "1/1" "0/1"
## HiC_scaffold_51_6305599 "0/1" "0/1" "2|2"
## HiC_scaffold_51_8530818 "1|1" "1|1" "0/0"
## HiC_scaffold_51_11653312 "0/0" "0/0" "0/0"
## HiC_scaffold_51_13138547 "0/0" "1|1" "1/1"
## HiC_scaffold_51_14457091 NA "1|1" "1|1"
## HiC_scaffold_51_15512668 "1/1" "0/1" "1/1"
## HiC_scaffold_51_17816346 "0/0" "0/0" "1/1"
## HiC_scaffold_51_19997934 "1|1" "1|1" "0/0"
## HiC_scaffold_51_19997936 "1|1" "1|1" "0/0"
## HiC_scaffold_51_20870773 "0/0" "0/0" "0/0"
## HiC_scaffold_51_26660104 "0|1" "0|1" "1|1"
## HiC_scaffold_51_40727521 NA "0/0" "1|1"
## HiC_scaffold_51_40892841 NA NA "0/1"
## HiC_scaffold_51_41717519 "0/1" "0/0" "0/0"
## HiC_scaffold_51_42547638 "0/1" "1/1" "1/1"
## HiC_scaffold_52_3335804 "1/1" "0/1" "0/0"
## HiC_scaffold_52_4149130 "1/1" "0/1" "0/1"
## HiC_scaffold_52_6893679 "1|1" "1|1" NA
## HiC_scaffold_52_13155416 "1/1" "0/1" "1/1"
## HiC_scaffold_52_13155437 "1|1" "0|1" "1|1"
## HiC_scaffold_52_13155442 "1|1" "0|1" "1|1"
## HiC_scaffold_52_14885688 "0/0" "0/0" NA
## HiC_scaffold_52_14895078 "0/1" "1/1" "1/1"
## HiC_scaffold_52_15141791 "0/1" "0/1" NA
## HiC_scaffold_52_15743051 "0/0" "1|1" "0/0"
## HiC_scaffold_52_15760201 "1/1" "0/1" "0/0"
## HiC_scaffold_52_15834589 "1|1" "1|1" "1|1"
## HiC_scaffold_52_15841769 "0/0" NA "0/1"
## HiC_scaffold_52_15862421 NA "1|1" "1/1"
## HiC_scaffold_52_15970970 "0/0" "0|1" "0/0"
## HiC_scaffold_52_16275237 "0/0" "0/1" "1/1"
## HiC_scaffold_52_16275240 NA "0|1" "0/0"
## HiC_scaffold_52_16275290 "0/0" "1|1" "0/0"
## HiC_scaffold_52_16524164 "1|1" "0/1" "0/0"
## HiC_scaffold_52_16524572 NA "1/1" "1/1"
## HiC_scaffold_52_16525647 NA "0/0" "1|1"
## HiC_scaffold_52_16637047 "1/1" "0/0" "0/1"
## HiC_scaffold_52_17202127 "1|1" "0/0" "0/0"
## HiC_scaffold_52_17207724 "1/1" "1/1" "0/0"
## HiC_scaffold_52_17508820 NA "0/0" "1|1"
## HiC_scaffold_52_17547593 "0/1" "0/1" "0/1"
## HiC_scaffold_52_17551239 NA "0/1" "0/0"
## HiC_scaffold_52_17560696 "0/0" "0|1" "1|1"
## HiC_scaffold_52_17560699 "0/0" "0|1" "1|1"
## HiC_scaffold_52_17741250 "1/1" "1/1" "0/1"
## HiC_scaffold_52_17742260 "0/0" "1|1" "0/1"
## HiC_scaffold_52_18340578 "1/1" "1/1" "0/0"
## HiC_scaffold_52_18415911 NA "1/1" "1/1"
## HiC_scaffold_52_22189517 "1/1" "0/1" "0/1"
## HiC_scaffold_52_22526592 "0/1" "0/0" "0/1"
## HiC_scaffold_52_26393471 "0/1" "0/1" "0/1"
## HiC_scaffold_52_26799380 "1/1" "1/1" "0/0"
## HiC_scaffold_52_31871931 "0/0" "0/1" "0/1"
## HiC_scaffold_52_31874283 "0/0" "1|1" "0/1"
## HiC_scaffold_52_31874287 "0/0" "0|1" "0/0"
## HiC_scaffold_52_32161053 "0|1" "1|1" NA
## HiC_scaffold_52_33165557 "0/1" "0/0" "0/1"
## HiC_scaffold_52_33897620 "1/1" "0/0" "0/0"
## HiC_scaffold_52_34763156 NA "0/1" "1|1"
## HiC_scaffold_52_34763171 NA "0/1" "1|1"
## HiC_scaffold_52_35174755 NA "0/1" "0/0"
## HiC_scaffold_52_35608453 "1/1" "0/0" "0/0"
## HiC_scaffold_52_35608470 "1|1" "0/0" "0/0"
## HiC_scaffold_52_39464728 NA "0/0" "0/0"
## HiC_scaffold_52_42141354 "0/0" "1|1" NA
## HiC_scaffold_52_44675725 "1/1" "0/1" "1|1"
## HiC_scaffold_52_49935920 "0/0" "1/1" "1|1"
## HiC_scaffold_53_21789524 "0/1" "0/0" "1/1"
## HiC_scaffold_53_25168042 "1/1" "0/0" "0/0"
## HiC_scaffold_53_26398989 "1|1" "0/0" "1|1"
## HiC_scaffold_53_26398992 "1|1" "0/0" "1|1"
## HiC_scaffold_53_26398994 "1|1" "0/0" "1|1"
## HiC_scaffold_53_26549665 "0/1" "1|1" "0/1"
## HiC_scaffold_53_29227676 "0|1" "0|1" "0|1"
## HiC_scaffold_53_31250349 "1/1" "1|1" "1/1"
## HiC_scaffold_54_530581 "1|1" "1|1" "1|1"
## HiC_scaffold_54_794095 "0/0" "1|1" "1|1"
## HiC_scaffold_54_1171109 "0/0" "0|1" "1|1"
## HiC_scaffold_54_1378956 "0/0" "0/0" "0/0"
## HiC_scaffold_54_1380539 "0/1" "0|1" "0/1"
## HiC_scaffold_54_3045015 NA "1/1" "1/1"
## HiC_scaffold_54_3185987 "0/0" "0/0" "1/1"
## HiC_scaffold_54_4401098 "0/0" "1|1" "0/0"
## HiC_scaffold_54_5595903 "1/1" "1/1" "0/1"
## HiC_scaffold_54_5595921 "0/1" "0/1" "0/1"
## HiC_scaffold_54_5595928 "0|1" "0/1" "0/0"
## HiC_scaffold_54_5595949 "1/1" "1/1" "0/1"
## HiC_scaffold_54_6649662 "0/0" "1/1" "0/1"
## HiC_scaffold_54_8036734 "0|1" "0|1" NA
## HiC_scaffold_54_9206614 "1|1" "0/1" NA
## HiC_scaffold_54_35913192 "1/1" "1/1" "0/1"
## HiC_scaffold_54_35913282 "0/1" NA "0|1"
## HiC_scaffold_54_35913283 "1/1" NA "0|1"
## HiC_scaffold_55_1260491 "1/1" "1/1" "1/1"
## HiC_scaffold_55_3254027 "0/0" "0/0" "0/0"
## HiC_scaffold_55_3281985 "0/0" "0/0" "0/0"
## HiC_scaffold_55_5409544 "1/1" "0/0" "0/0"
## HiC_scaffold_55_5411094 "1|1" "0/1" "1|1"
## HiC_scaffold_55_5411115 "1/1" "0/1" "1/1"
## HiC_scaffold_55_18121799 "1/1" "0/1" "1/1"
## HiC_scaffold_55_19605809 NA "1|1" "1|1"
## HiC_scaffold_55_19605817 "1|1" "1|1" "1|1"
## HiC_scaffold_55_19605821 "1|1" "1|1" "1|1"
## HiC_scaffold_55_20195204 "0/0" "0/1" "0/0"
## HiC_scaffold_55_20886967 "0/0" "0/0" "0/1"
## HiC_scaffold_55_23222937 "1/1" "1/1" NA
## HiC_scaffold_55_23626331 "1/1" "0/0" NA
## HiC_scaffold_55_24539590 "1/1" "1/1" "1/1"
## HiC_scaffold_55_24585939 "1/1" "0/0" "0/0"
## HiC_scaffold_55_34174151 "0/0" "0/1" "1|1"
## HiC_scaffold_56_17874332 NA "1/1" "0/0"
## HiC_scaffold_56_18635259 "0/0" "0/1" "0/0"
## HiC_scaffold_56_23654344 "0/0" "0/0" "0/1"
## HiC_scaffold_56_35850533 "0/0" "1/1" "1/1"
## HiC_scaffold_56_35850539 NA "0/1" "0/0"
## HiC_scaffold_56_40813556 "0/1" "1/1" "0/0"
## HiC_scaffold_56_53211633 "0/0" "1/1" "1/1"
## HiC_scaffold_56_60070829 "1/1" "1/1" "1|1"
## HiC_scaffold_56_73286017 "0/1" "0/1" "1|1"
## HiC_scaffold_56_73829442 "0/0" "0/0" "0/0"
## HiC_scaffold_56_73829443 "0/0" "0/0" "0/0"
## HiC_scaffold_56_76060304 "0/0" "1|1" "0/0"
## HiC_scaffold_57_25306408 "1/1" "1/1" "0/0"
## HiC_scaffold_57_29222385 "0/0" NA "0/0"
## HiC_scaffold_57_29592432 "0/1" "0/1" "0/1"
## HiC_scaffold_57_31472698 "0/0" NA "0/0"
## HiC_scaffold_57_32371742 "0/0" "0/0" "1/1"
## HiC_scaffold_57_36495072 "0/0" "0/0" NA
## HiC_scaffold_57_37286264 "1/1" "0/0" "1/1"
## HiC_scaffold_57_38537415 "0/0" "1|1" "1|1"
## HiC_scaffold_57_45438854 "2|2" NA NA
## HiC_scaffold_57_52856874 NA "0/1" "0/0"
## HiC_scaffold_57_53575355 "0/0" "1/1" "1/1"
## HiC_scaffold_57_55856783 "0/0" NA "0/0"
## HiC_scaffold_58_1362614 "0/1" "1/1" "0/0"
## HiC_scaffold_58_1432845 "1/1" "1/1" NA
## HiC_scaffold_58_1541720 "0/0" "2|2" "2/2"
## HiC_scaffold_58_2777120 "0/0" "0/0" "0/0"
## HiC_scaffold_58_2973169 "0/0" "1/1" "1/1"
## HiC_scaffold_58_3243043 NA "0/0" "1/1"
## HiC_scaffold_58_4035282 "1/1" "1/1" "0/0"
## HiC_scaffold_58_5442157 "1|1" "0|1" "0/0"
## HiC_scaffold_58_8004631 "1/1" NA "0/0"
## HiC_scaffold_58_8058998 "1|1" "0/0" "0/0"
## HiC_scaffold_58_8932837 "1/1" "0/0" NA
## HiC_scaffold_58_14814944 "0/0" "0|1" "0/1"
## HiC_scaffold_58_15639988 "0/0" "0/0" "1/1"
## HiC_scaffold_58_15707198 "1/1" "1/1" "1/1"
## HiC_scaffold_58_15707258 "1/1" "1/1" NA
## HiC_scaffold_58_15710623 "0/1" "0/0" "0/0"
## HiC_scaffold_58_19155063 "1|1" "0/1" "1|1"
## HiC_scaffold_58_20224050 "0/0" "1/1" NA
## HiC_scaffold_58_38475355 "1/1" NA "1/1"
## HiC_scaffold_59_3979055 "1/1" "0/1" "1/1"
## HiC_scaffold_59_5071810 "0/1" "1|1" "0/0"
## HiC_scaffold_59_5349936 "0/0" "0/1" "0/0"
## HiC_scaffold_59_5350114 NA "0/1" "0/0"
## HiC_scaffold_59_7738302 "0/0" "0/0" "0/1"
## HiC_scaffold_59_7738351 NA "0/0" "0/0"
## HiC_scaffold_59_7958561 "0/0" "0/0" "0/0"
## HiC_scaffold_59_9273798 "0/1" "0/0" NA
## HiC_scaffold_59_50928099 "0/0" "0/0" "0/1"
## HiC_scaffold_59_52960060 "0/0" "0|1" "0/1"
## HiC_scaffold_6_10569023 "0/0" "0/1" "0/1"
## HiC_scaffold_6_10711445 "0/0" "1/1" "0/0"
## HiC_scaffold_6_13209200 "1|1" "0/1" "1|1"
## HiC_scaffold_6_13213107 "1/1" "0/0" "1/1"
## HiC_scaffold_6_13311684 "0/0" "0/0" NA
## HiC_scaffold_6_15670783 "0/0" "1|1" "0/0"
## HiC_scaffold_6_19111232 "0/0" "1/1" "0/0"
## HiC_scaffold_6_32805498 "1/1" "1/1" "0/0"
## HiC_scaffold_6_38793174 "0|1" NA "0|1"
## HiC_scaffold_6_41092101 "0/0" "1|1" "1|1"
## HiC_scaffold_6_41342933 NA "0/0" "0/1"
## HiC_scaffold_6_47594508 "0/0" "0/1" "1/1"
## HiC_scaffold_60_70878 NA "1|1" "1|1"
## HiC_scaffold_60_99549 "0/0" "0/0" "0/0"
## HiC_scaffold_60_201823 NA "0/1" "1/1"
## HiC_scaffold_60_712969 "1|1" NA "1|1"
## HiC_scaffold_60_744783 "1/1" NA "1|1"
## HiC_scaffold_60_744788 "0/1" NA "0|0"
## HiC_scaffold_60_22142128 "0/1" "0/0" "0/1"
## HiC_scaffold_60_27599770 "1/1" NA "1/1"
## HiC_scaffold_60_30608878 "0/1" NA "1|1"
## HiC_scaffold_60_32657324 "0/0" "0/0" "1/1"
## HiC_scaffold_60_32672580 "1/1" "1/1" "0/1"
## HiC_scaffold_60_38856893 "1/1" "1/1" "0/0"
## HiC_scaffold_60_39028335 "1/1" "1/1" "1/1"
## HiC_scaffold_60_40296869 "0/0" "0/1" "0/0"
## HiC_scaffold_60_42775723 "0/0" "0/0" "0/0"
## HiC_scaffold_60_44687906 "1/1" "1/1" "0/0"
## HiC_scaffold_60_44804601 "1/1" "0/1" "0/0"
## HiC_scaffold_60_53696867 "1|1" "1|1" "0/0"
## HiC_scaffold_60_53696868 "1|1" "1|1" "0/0"
## HiC_scaffold_60_60651515 "0/1" "0/0" NA
## HiC_scaffold_60_70678462 "1/1" "1/1" NA
## HiC_scaffold_61_2205328 "0/0" NA "0/0"
## HiC_scaffold_61_2491706 "1|1" "1/1" "1/1"
## HiC_scaffold_61_4009916 "0/0" "2/2" "0/0"
## HiC_scaffold_61_4062917 "0/0" "0/2" "0/0"
## HiC_scaffold_61_4122763 "1|1" "1|1" "0/0"
## HiC_scaffold_61_4216461 NA "1/1" "1/1"
## HiC_scaffold_61_4325053 "0/0" "0/0" NA
## HiC_scaffold_61_9004838 "1|1" "1|1" "0/0"
## HiC_scaffold_61_14635083 "0/1" "0/1" "0/1"
## HiC_scaffold_62_1128608 "1/1" "1/1" "1/1"
## HiC_scaffold_62_11335200 "0/0" "0|0" NA
## HiC_scaffold_62_18828476 "1/1" "1/1" "0/0"
## HiC_scaffold_62_21548870 "1|1" "1|1" "1|1"
## HiC_scaffold_62_23103274 "0/0" "0/0" NA
## HiC_scaffold_62_25793456 "0/1" "1/1" "0/0"
## HiC_scaffold_62_25887474 "1/1" "0/0" NA
## HiC_scaffold_62_28516096 "1|1" "0/0" "0/0"
## HiC_scaffold_62_28516099 "1|1" "0/0" "0/0"
## HiC_scaffold_62_28818725 "0|1" "0/0" "0/0"
## HiC_scaffold_62_28818729 "0/1" "1/1" "1/1"
## HiC_scaffold_62_45207353 "0/0" "0/0" "0/0"
## HiC_scaffold_63_3092269 "1/1" "0/1" "1/1"
## HiC_scaffold_63_3977940 "0/0" "1/1" "0/0"
## HiC_scaffold_63_4084937 "0/0" "0|1" "1/1"
## HiC_scaffold_63_4196326 "0/1" "0|1" "1/1"
## HiC_scaffold_63_6262453 "1/1" "0/0" "0/0"
## HiC_scaffold_63_6350204 "1|1" "1/1" "1/1"
## HiC_scaffold_63_6458794 "0/0" "0/1" "0|1"
## HiC_scaffold_64_9162978 "0/0" "0/1" "0/0"
## HiC_scaffold_64_16876561 NA "0/0" "1|1"
## HiC_scaffold_64_17543009 NA "0/1" "0/0"
## HiC_scaffold_64_18925356 "0/0" "0/0" "1/1"
## HiC_scaffold_64_19133050 "0/0" "1|1" "0/0"
## HiC_scaffold_64_19627769 "1|1" "0|1" "0/0"
## HiC_scaffold_64_20477250 "0/0" "1/1" "1/1"
## HiC_scaffold_64_22816677 "0/1" "1/1" "0/0"
## HiC_scaffold_64_22954654 "1|1" "1|1" "1|1"
## HiC_scaffold_64_22954658 "1|1" "1|1" "1|1"
## HiC_scaffold_64_22954682 "1/1" "1/1" "1/1"
## HiC_scaffold_65_6829971 "1/1" "1/1" "0/0"
## HiC_scaffold_65_8071102 "1|1" "0/0" NA
## HiC_scaffold_65_9023979 "0/0" "0/1" NA
## HiC_scaffold_65_9839671 "0/0" "0|1" "0/0"
## HiC_scaffold_65_10404778 "0/0" "1|1" "0/0"
## HiC_scaffold_65_11327791 "1/1" "1/1" "1/1"
## HiC_scaffold_65_11332104 "1/1" NA "0/0"
## HiC_scaffold_65_34823822 "0/0" "1/1" "1|1"
## HiC_scaffold_65_51418017 "1/1" "1|1" "1/1"
## HiC_scaffold_65_54053979 "1|1" "1|1" "1|1"
## HiC_scaffold_65_57110875 NA NA "1/1"
## HiC_scaffold_66_15615363 NA "1|1" "0/0"
## HiC_scaffold_66_15672090 "0/0" "0/1" "1/1"
## HiC_scaffold_66_17903445 "0|1" "0/0" "0/0"
## HiC_scaffold_66_18298629 "0|1" "0|1" "1|1"
## HiC_scaffold_66_19730676 "0/1" "1|1" "1|1"
## HiC_scaffold_66_23688768 "0/1" "0/1" "0/1"
## HiC_scaffold_66_26614535 "0/0" "0/0" "0/0"
## HiC_scaffold_66_27445665 "0/0" "1/1" "0/0"
## HiC_scaffold_66_29457165 NA "0|1" "1|1"
## HiC_scaffold_66_29457180 "0/0" "0/0" "0/0"
## HiC_scaffold_66_30116287 "1/1" "1/1" "1/1"
## HiC_scaffold_66_31603503 "1|1" "1|1" "1|1"
## HiC_scaffold_66_33261460 "0/1" "0/1" "0/0"
## HiC_scaffold_66_34138981 "1/1" "1/1" "1/1"
## HiC_scaffold_66_34139020 "0/0" "0/0" "0/0"
## HiC_scaffold_66_34142862 "0/0" "1/1" "0/0"
## HiC_scaffold_67_1404390 "0/0" "1/1" "0/0"
## HiC_scaffold_67_28493665 NA "0/0" NA
## HiC_scaffold_67_30243885 "0/0" "1|1" NA
## HiC_scaffold_67_31511806 NA "0|1" "1|1"
## HiC_scaffold_67_34638092 "0/0" "0/1" "1/1"
## HiC_scaffold_67_37534720 "0/1" "1/1" NA
## HiC_scaffold_67_39679546 "0/0" "1/1" "1/1"
## HiC_scaffold_67_39854918 NA "0/0" NA
## HiC_scaffold_67_39860738 "0/1" "1/1" "1/1"
## HiC_scaffold_67_40331656 "0/0" "0/0" "0/0"
## HiC_scaffold_67_40824747 "1|1" "1|1" "0/0"
## HiC_scaffold_68_3438132 "0|1" "1|1" "1|1"
## HiC_scaffold_68_3438133 "0|1" "1|1" "1|1"
## HiC_scaffold_68_11206902 "0/1" "1/1" "0/0"
## HiC_scaffold_68_32770607 "0/0" "0|1" "0/1"
## HiC_scaffold_68_34016823 "1/1" "0/0" "2|2"
## HiC_scaffold_68_34020019 "1/1" "0/0" "1/1"
## HiC_scaffold_68_40296057 "1|1" NA NA
## HiC_scaffold_68_40296059 "1|1" NA NA
## HiC_scaffold_68_65001879 "0/0" "1/1" "1/1"
## HiC_scaffold_69_23311147 "0/0" "1/1" "0/0"
## HiC_scaffold_69_27351303 "0/1" "1/1" "0/0"
## HiC_scaffold_69_29437208 "1/1" "0|1" "1|1"
## HiC_scaffold_69_33699381 "0/0" "1|1" "1|1"
## HiC_scaffold_69_40194698 NA "1/1" NA
## HiC_scaffold_69_48273575 NA "1/1" "1/1"
## HiC_scaffold_69_48348026 "0|1" "0/0" NA
## HiC_scaffold_69_48348034 "0|1" "1|1" NA
## HiC_scaffold_69_49563252 "0/1" "1/1" "0/0"
## HiC_scaffold_69_49593952 "0/0" "0/0" "0/1"
## HiC_scaffold_69_49859037 "0/0" "1|1" "0|1"
## HiC_scaffold_69_51271238 "0/0" "1/1" "1/1"
## HiC_scaffold_69_51529836 "0/0" "1/1" NA
## HiC_scaffold_69_57313650 "0|1" "1/1" "1/1"
## HiC_scaffold_69_57359194 "0/0" "1/1" "0/0"
## HiC_scaffold_6951_523650 "0/1" NA "0/0"
## HiC_scaffold_6951_897126 "1|1" "0/0" "1|1"
## HiC_scaffold_6951_1134482 NA "0/1" "1|1"
## HiC_scaffold_6951_2484960 "0/0" "1/1" "0/0"
## HiC_scaffold_6951_3301273 "1|1" NA "1/1"
## HiC_scaffold_6951_3314609 NA NA "1/1"
## HiC_scaffold_6951_3945993 "0/0" "1|1" "0/0"
## HiC_scaffold_6958_218293 "0/2" "0/0" "0/0"
## HiC_scaffold_6958_449143 NA "1/1" "1/1"
## HiC_scaffold_7_351023 "0/0" "0/0" "1/1"
## HiC_scaffold_7_488024 "0/0" "1|1" "0/0"
## HiC_scaffold_7_492663 "1/1" "1/1" "1/1"
## HiC_scaffold_7_693567 "1|1" "0/0" NA
## HiC_scaffold_7_2379128 "0/1" "1/1" NA
## HiC_scaffold_7_3087721 "1/1" "0/1" NA
## HiC_scaffold_7_3394880 "0/0" "1/1" "0/0"
## HiC_scaffold_7_22247106 "0/0" "1|1" NA
## HiC_scaffold_70_4632611 "0/1" "0|1" "0/0"
## HiC_scaffold_70_14042778 "0/0" "0/0" "1|1"
## HiC_scaffold_71_410844 "0/0" "1|1" "0|1"
## HiC_scaffold_71_1753451 "0/1" "1/1" "0/0"
## HiC_scaffold_71_2283682 "1|1" "0|1" NA
## HiC_scaffold_71_3439685 "1/2" "0/0" "0/0"
## HiC_scaffold_71_17850462 "1/1" "1/1" NA
## HiC_scaffold_71_20588314 "0|1" "0/0" "1|1"
## HiC_scaffold_71_25465351 "0|1" NA "1|1"
## HiC_scaffold_71_25465352 "0|1" NA "1|1"
## HiC_scaffold_71_26356062 NA "0/0" "0/1"
## HiC_scaffold_72_11785096 "1/1" "1/1" "1/1"
## HiC_scaffold_72_17285854 "1/1" "0/0" NA
## HiC_scaffold_72_23704999 "0/0" "1/1" "0/0"
## HiC_scaffold_72_24465318 "0/0" "0/0" "1|1"
## HiC_scaffold_72_30457277 "0/0" "0/1" "0/1"
## HiC_scaffold_72_32068649 "0/0" "1/1" "0/0"
## HiC_scaffold_72_35058295 "0/0" "1/1" "0/1"
## HiC_scaffold_72_36024997 "0/0" "1|1" "1|1"
## HiC_scaffold_72_37135067 "1|1" "0/0" "1|1"
## HiC_scaffold_72_38410141 NA "1/1" "1/1"
## HiC_scaffold_72_38448056 "0/0" "0/0" NA
## HiC_scaffold_72_41412511 "1/1" "0/0" "0/0"
## HiC_scaffold_73_2192629 "1|1" "1|1" "0/0"
## HiC_scaffold_73_2920208 "1|1" NA "0/0"
## HiC_scaffold_73_4522493 "0/0" "1/1" "1/1"
## HiC_scaffold_73_4748625 "1/1" "1/1" "1/1"
## HiC_scaffold_73_5839336 "1/1" "1/1" NA
## HiC_scaffold_73_9338582 "0/1" "0/1" NA
## HiC_scaffold_73_27393859 "0/1" "0/1" NA
## HiC_scaffold_74_14235619 "1/1" "1/1" "0/0"
## HiC_scaffold_74_14515598 "0/0" "1/1" "1/1"
## HiC_scaffold_74_15116121 NA NA NA
## HiC_scaffold_74_17233613 "1/1" "1/1" "1/1"
## HiC_scaffold_74_17725340 "1|1" "1|1" "1|1"
## HiC_scaffold_74_18418135 "0/0" NA NA
## HiC_scaffold_74_18418138 "0/0" "0/0" NA
## HiC_scaffold_74_21254425 "1/1" "0/0" "1/1"
## HiC_scaffold_74_22261065 "0/0" "0/1" "0/1"
## HiC_scaffold_74_47132519 "1|1" "0/0" "1|1"
## HiC_scaffold_74_50979096 "0/0" "1/1" "0/0"
## HiC_scaffold_74_51060549 "0/1" "1/1" "1/1"
## HiC_scaffold_74_53256803 NA "1/1" "0/0"
## HiC_scaffold_74_55464169 "0/0" "0/0" "0/0"
## HiC_scaffold_74_55515512 "0/1" "0/1" "1/1"
## HiC_scaffold_74_55999260 NA "0/0" "1|1"
## HiC_scaffold_74_57404902 "1|1" "0/0" "1|1"
## HiC_scaffold_74_58181927 "1|1" "0/1" "0/0"
## HiC_scaffold_74_58198600 "1/1" "1/1" "0/0"
## HiC_scaffold_74_63060195 NA "1/1" "1/1"
## HiC_scaffold_75_5345466 "0/0" NA "1|1"
## HiC_scaffold_75_5346522 "0/0" "1/1" "0/0"
## HiC_scaffold_75_5346535 "0/0" "1/1" "0/0"
## HiC_scaffold_75_9850973 "0/0" "1/1" "1|1"
## HiC_scaffold_76_27149820 "0/0" "0/1" "0/0"
## HiC_scaffold_76_31582908 "1/1" "0/0" "0/0"
## HiC_scaffold_76_31792815 "0/0" "0/1" "0/0"
## HiC_scaffold_76_35352820 "1|1" "0/0" "0/0"
## HiC_scaffold_76_57782171 "0/0" "0/0" "0/0"
## HiC_scaffold_76_59862401 NA "1|1" "0/0"
## HiC_scaffold_76_61095594 "1|1" "0/0" "1|1"
## HiC_scaffold_76_65496128 "1/1" "0/0" "0/0"
## HiC_scaffold_76_68965847 "0/1" "0/1" "1/1"
## HiC_scaffold_76_68966411 "0/0" "0/1" "1/1"
## HiC_scaffold_76_69823482 "0/1" "1/1" "0/0"
## HiC_scaffold_76_73343841 "1/1" "0/0" NA
## HiC_scaffold_77_3598274 NA "0/0" "0|1"
## HiC_scaffold_77_6982137 "0/0" "0/1" "0/0"
## HiC_scaffold_77_11021994 "1/1" "0/1" "0/1"
## HiC_scaffold_77_13608165 "0/0" "0/1" "1/1"
## HiC_scaffold_77_16888594 NA "0/1" "0/1"
## HiC_scaffold_77_16888623 NA "0/0" "0|1"
## HiC_scaffold_77_16889448 NA "0/1" "0/0"
## HiC_scaffold_77_39784685 "0|1" "0/0" "1|1"
## HiC_scaffold_77_44375866 "1/1" "1/1" "1/1"
## HiC_scaffold_77_45385370 "0/0" "1/1" "1/1"
## HiC_scaffold_78_5719919 NA "1/1" "0/1"
## HiC_scaffold_78_11353297 "0/0" "0/1" "0/0"
## HiC_scaffold_78_27316392 "0/0" "0/1" "0/0"
## HiC_scaffold_78_48124809 "0/0" "0/0" "0/0"
## HiC_scaffold_78_48124826 "1/1" NA "0/0"
## HiC_scaffold_78_48126176 "0/0" "0/1" "0/0"
## HiC_scaffold_78_48279096 "1|1" "0/0" NA
## HiC_scaffold_78_48434558 "0/0" "1|1" "1|1"
## HiC_scaffold_78_49759181 NA "1|1" "0|1"
## HiC_scaffold_78_49759192 "0/0" "1|1" "0/0"
## HiC_scaffold_78_49759215 NA NA "1/1"
## HiC_scaffold_78_51364025 "1/1" "1/1" "1/1"
## HiC_scaffold_78_55395445 "0/0" "0/0" "0/0"
## HiC_scaffold_78_59610866 "0/1" "0/1" "1/1"
## HiC_scaffold_78_62136661 "1/1" "0/0" "1/1"
## HiC_scaffold_79_1643780 "0/1" "0/1" "1/1"
## HiC_scaffold_79_2519178 "0/0" "1/1" "1|1"
## HiC_scaffold_79_2858100 "0/0" "0/0" "0/0"
## HiC_scaffold_79_3922454 "1/1" "0/0" NA
## HiC_scaffold_79_4127878 "0/0" NA "0/0"
## HiC_scaffold_79_4543693 "1/1" "0/0" "0/0"
## HiC_scaffold_79_11507678 "1|1" "1/1" "0/0"
## HiC_scaffold_79_12618812 "0/0" "1/1" "0/0"
## HiC_scaffold_79_14185404 "1|1" "1|1" "1|1"
## HiC_scaffold_79_17120237 "0/0" "1/1" "0/0"
## HiC_scaffold_79_17120254 "0/0" "1/1" "0/0"
## HiC_scaffold_79_35551507 NA "1|1" "1|1"
## HiC_scaffold_79_35551543 "1/1" "1/1" "1/1"
## HiC_scaffold_79_38927423 "0/0" "1|1" "0/0"
## HiC_scaffold_79_42623307 "0/1" "1|1" "1|1"
## HiC_scaffold_79_43179786 "0/1" "0/0" "0/0"
## HiC_scaffold_79_43180099 "1/1" "0/0" NA
## HiC_scaffold_79_43828078 "0|1" NA "0/0"
## HiC_scaffold_79_43872513 "0/0" "0/0" "1/1"
## HiC_scaffold_79_44627215 "1/1" "1/1" "1/1"
## HiC_scaffold_79_50772769 "0/0" "0|1" NA
## HiC_scaffold_79_55468575 NA "0/1" "0/0"
## HiC_scaffold_79_55816114 "0/0" "0/0" "0/0"
## HiC_scaffold_79_59915784 "1/1" "0/1" "0/1"
## HiC_scaffold_79_60165298 NA "0|1" "0/0"
## HiC_scaffold_79_60165305 "0/0" "1|1" "0/0"
## HiC_scaffold_79_69145556 "0/0" "0/2" "0/0"
## HiC_scaffold_79_70208305 "0|1" "0|1" "0/0"
## HiC_scaffold_79_73412292 "0/0" "0/0" "2/2"
## HiC_scaffold_79_73416663 "0/0" "1|1" "1|1"
## HiC_scaffold_79_73416688 "0/0" "0/0" "1|1"
## HiC_scaffold_79_76863102 "0/0" "0/0" "0/0"
## HiC_scaffold_79_81279649 "0/0" "0/0" "1|1"
## HiC_scaffold_79_81499990 "0/0" "1/1" "1/1"
## HiC_scaffold_79_82319836 "0/0" "0|1" "1|1"
## HiC_scaffold_79_82319849 "1/1" "0|1" "1|1"
## HiC_scaffold_79_83163707 "0/1" "0/0" "0/0"
## HiC_scaffold_79_86283512 "1/1" "0/0" NA
## HiC_scaffold_79_87123758 "1|1" "1|1" "1|1"
## HiC_scaffold_79_88362889 "0/0" "0/1" "0/0"
## HiC_scaffold_79_88599431 NA "0/1" NA
## HiC_scaffold_79_89322919 NA "1/1" "0/0"
## HiC_scaffold_79_89331918 NA "0/0" "1|1"
## HiC_scaffold_79_91340958 NA "0/0" "1/1"
## HiC_scaffold_8_13649836 "1|1" "0/1" "1|1"
## HiC_scaffold_8_13650752 "1|1" "1|1" "1|1"
## HiC_scaffold_8_23818233 NA "0/1" "0/1"
## HiC_scaffold_8_24123972 "0/1" "1|1" "1|1"
## HiC_scaffold_8_24230791 "0/0" "1|1" "0/1"
## HiC_scaffold_8_24588423 "0/0" "0|2" "0|2"
## HiC_scaffold_8_25348483 "0/0" "0/0" "0/0"
## HiC_scaffold_8_25421933 "0|1" "1/1" "0/0"
## HiC_scaffold_8_25772942 "0/1" "0/0" NA
## HiC_scaffold_8_26289589 "0/0" "0/0" "0/0"
## HiC_scaffold_8_27602740 NA "0/1" NA
## HiC_scaffold_8_28159063 NA "1/1" "0/0"
## HiC_scaffold_8_30829320 "0/0" "0/0" "1/1"
## HiC_scaffold_8_31044084 NA "0/1" "1|1"
## HiC_scaffold_8_31415507 "0/0" "0/1" "0/0"
## HiC_scaffold_8_32594682 "1|1" "0/0" "1|1"
## HiC_scaffold_80_3617847 "1/1" "1|1" "1|1"
## HiC_scaffold_80_5758183 "0/0" "0/0" "0/0"
## HiC_scaffold_80_6760006 "1|1" "0/0" "1|1"
## HiC_scaffold_80_6760037 "1/1" "0/0" "1/1"
## HiC_scaffold_80_7772622 "1/1" "1/1" "1/1"
## HiC_scaffold_80_7919533 "0/1" "0/0" "0/1"
## HiC_scaffold_80_8110052 "1|1" "0/1" "0/1"
## HiC_scaffold_80_8193366 "1/1" "1/1" "1/1"
## HiC_scaffold_80_8625784 NA "1/1" "1/1"
## HiC_scaffold_80_8912846 "0/1" "0/0" "1/1"
## HiC_scaffold_80_9544102 NA "0/0" "1/1"
## HiC_scaffold_80_10770701 "0/1" "0/1" "1/1"
## HiC_scaffold_80_11590146 "1/1" "0/1" "1/1"
## HiC_scaffold_80_16953653 "0/1" "0/0" "1/1"
## HiC_scaffold_80_18938832 "0/0" "0/0" "1|1"
## HiC_scaffold_80_19015946 "1/1" "0/0" NA
## HiC_scaffold_80_19404001 "1/1" "1/1" "1/1"
## HiC_scaffold_80_25346708 "0/1" "0/0" "0/0"
## HiC_scaffold_80_37479851 "0/1" "0/0" "0/0"
## HiC_scaffold_80_37507516 "1/1" "1/1" "0/0"
## HiC_scaffold_81_1187192 "0/0" "1/1" "0/1"
## HiC_scaffold_81_2689826 NA "0/0" "1|1"
## HiC_scaffold_81_2690751 NA "0/0" "0/0"
## HiC_scaffold_81_6614123 "0/0" "0/1" "0/1"
## HiC_scaffold_81_7836855 "1/1" "0/0" "0/0"
## HiC_scaffold_81_10334868 "0/0" "0/0" NA
## HiC_scaffold_81_10458752 "0/1" "1/1" "0/1"
## HiC_scaffold_81_17515538 "1|1" "0/1" "1/1"
## HiC_scaffold_81_40271282 "0|1" "0/0" "0/0"
## HiC_scaffold_81_40271294 "0|1" "1/1" "1/1"
## HiC_scaffold_81_41096427 "0/0" "0|1" "0/0"
## HiC_scaffold_81_41096444 NA "0|1" "0/0"
## HiC_scaffold_81_43820595 NA "0/0" "0/0"
## HiC_scaffold_81_43820732 NA "0/0" "0/0"
## HiC_scaffold_81_43854278 "0/0" "0/0" "0/1"
## HiC_scaffold_81_44804862 NA "1/1" "0/0"
## HiC_scaffold_81_45063428 "0/0" "0/0" NA
## HiC_scaffold_81_45950590 "1/1" "1/1" "0/0"
## HiC_scaffold_81_46714752 "1|1" "1|1" "1|1"
## HiC_scaffold_81_46714759 "1|1" "1|1" "1|1"
## HiC_scaffold_81_47170397 "1|1" "1|1" "1|1"
## HiC_scaffold_81_47628201 "0|1" "1|1" "0/0"
## HiC_scaffold_81_48105216 "1|1" NA "0/0"
## HiC_scaffold_81_48932070 "0/0" "0/0" "0/1"
## HiC_scaffold_81_54050146 "1/1" "1/1" "1/1"
## HiC_scaffold_82_5672063 "1/1" "1/1" "1|1"
## HiC_scaffold_82_8796823 "1|1" "1|1" "0|1"
## HiC_scaffold_82_13450959 "1/1" "0/1" "1/1"
## HiC_scaffold_82_26144442 "0/0" "1|1" "0/0"
## HiC_scaffold_82_26147011 "1|1" "1|1" NA
## HiC_scaffold_82_28907834 "0/0" "1/1" "0/0"
## HiC_scaffold_82_34413793 "0|1" "1|1" "0/0"
## HiC_scaffold_82_34413800 "0|1" "1|1" "1/1"
## HiC_scaffold_82_36173035 "0/0" "0/0" "0/0"
## HiC_scaffold_82_40539273 "1/1" NA "0/0"
## HiC_scaffold_82_41470256 "0/0" NA "1/1"
## HiC_scaffold_83_23993605 "0/0" "0/0" "0|1"
## HiC_scaffold_83_35035961 "0/1" NA "0/0"
## HiC_scaffold_83_43423618 "0/0" "0/0" "0/0"
## HiC_scaffold_83_46920654 "0/1" "0/1" "1/1"
## HiC_scaffold_83_46934197 "1/1" "0/1" "1|1"
## HiC_scaffold_84_356301 "0/1" "0/0" "0/0"
## HiC_scaffold_84_5761817 "0/0" "0/1" "0/1"
## HiC_scaffold_84_5769022 "0/1" "0/1" "0/0"
## HiC_scaffold_84_6288130 "0|1" "0/0" "0|1"
## HiC_scaffold_84_6288141 "1/1" "1|1" "0|1"
## HiC_scaffold_84_6288147 "0/1" "1|1" "0/1"
## HiC_scaffold_84_7069238 "0/0" "0/0" "0/0"
## HiC_scaffold_84_9131309 "1/1" "1/1" "1/1"
## HiC_scaffold_84_10148442 "1/1" "0/1" "0/0"
## HiC_scaffold_84_14659391 "0|1" "0|1" "1/1"
## HiC_scaffold_84_16302752 "0/1" "0/0" "1/1"
## HiC_scaffold_84_18463244 "1/1" "1/1" "1/1"
## HiC_scaffold_84_22909575 "0/0" "0/0" "1|1"
## HiC_scaffold_84_29275266 "0/0" "0/0" "0/0"
## HiC_scaffold_84_31184610 NA NA NA
## HiC_scaffold_84_33093169 NA "1|1" "0/0"
## HiC_scaffold_84_37675180 "1/1" "1/1" "0/0"
## HiC_scaffold_84_39501814 "0/1" "0/0" NA
## HiC_scaffold_84_50169438 "0/0" "1|1" "0/0"
## HiC_scaffold_84_50169445 "0/0" "1|1" "0/0"
## HiC_scaffold_84_51231025 "0/0" "1/1" "1/1"
## HiC_scaffold_85_9792207 "0/0" "0|1" "0|1"
## HiC_scaffold_85_11784233 "0/0" "0/1" "0/0"
## HiC_scaffold_85_11911022 "0/0" "0/0" "1|1"
## HiC_scaffold_85_11911142 "1/1" "1/1" "0/1"
## HiC_scaffold_85_11913828 "1/1" "0/0" "0/0"
## HiC_scaffold_85_11913831 "0/0" "1/1" "1/1"
## HiC_scaffold_85_12353081 "0/1" "1/1" "1/1"
## HiC_scaffold_85_12414551 "0/0" "0/0" "1/1"
## HiC_scaffold_85_13043967 "1|1" "0/0" "0|1"
## HiC_scaffold_85_13221888 NA "1/1" "0/1"
## HiC_scaffold_85_27008863 "0/1" "0/0" "0/0"
## HiC_scaffold_85_28992264 "0/0" "0/0" "0/0"
## HiC_scaffold_85_28992268 "0/1" "0/0" "1/1"
## HiC_scaffold_85_64310850 "1|1" "1|1" "1|1"
## HiC_scaffold_85_65135112 NA NA "0/0"
## HiC_scaffold_85_65563529 "0/1" "0/0" "1/1"
## HiC_scaffold_86_1949664 "0/0" "0/0" "0/0"
## HiC_scaffold_86_5340423 "1/1" "0/1" "0/0"
## HiC_scaffold_86_5483991 "0/1" "0/0" "0/1"
## HiC_scaffold_86_8928469 "1|1" NA "1/1"
## HiC_scaffold_86_23727924 "0/0" "1|1" "0/0"
## HiC_scaffold_86_24825818 "1|1" "0/1" "1|1"
## HiC_scaffold_86_25333718 "1/1" NA "1/1"
## HiC_scaffold_86_29668168 "0|1" "0/0" "0/0"
## HiC_scaffold_86_30914243 "1|1" "1|1" "1|1"
## HiC_scaffold_86_32040320 "0|1" "0/0" "0/0"
## HiC_scaffold_86_32040329 "0|1" "0/0" "0/0"
## HiC_scaffold_86_32125061 "1/1" "0/0" "1/1"
## HiC_scaffold_86_32144758 NA "0/0" "1/1"
## HiC_scaffold_86_32153692 "1/1" "0/0" "1/1"
## HiC_scaffold_86_32534129 "0/0" "0/0" "1/1"
## HiC_scaffold_86_32605768 "1|1" "0/0" "0/0"
## HiC_scaffold_86_36355399 "0/0" "0/1" "0/1"
## HiC_scaffold_86_36357265 "0/1" "1/1" NA
## HiC_scaffold_87_1253643 NA "1/1" "0/0"
## HiC_scaffold_87_2137958 "0/1" "1/1" "0/1"
## HiC_scaffold_87_3980100 NA "1/1" "0/0"
## HiC_scaffold_87_4395923 "0/1" "0/1" "0/0"
## HiC_scaffold_87_5489328 "0/0" "1|1" "1|1"
## HiC_scaffold_87_6300441 "0|1" "0/1" "0|1"
## HiC_scaffold_87_16306904 "0/1" "1/1" "1/1"
## HiC_scaffold_87_44780945 "0/0" "0/0" "0/0"
## HiC_scaffold_88_5584327 "0/0" "1|1" "1|1"
## HiC_scaffold_88_7104630 "1|1" "0/1" "0/1"
## HiC_scaffold_88_7104631 "1|1" "1|1" "0/1"
## HiC_scaffold_88_7104638 "1|1" "1|1" "0/1"
## HiC_scaffold_88_7104639 "1|1" "1|1" "1/1"
## HiC_scaffold_88_7104640 "0/1" "1|1" "0/1"
## HiC_scaffold_88_7479340 "0/0" "0|1" "0|1"
## HiC_scaffold_88_8773607 "0/0" "1|1" "1/1"
## HiC_scaffold_88_9883678 "1|1" "1|1" "0/0"
## HiC_scaffold_88_10878718 "0/1" "0/0" "0/0"
## HiC_scaffold_88_19365116 "0/0" "0/0" "0/0"
## HiC_scaffold_88_20477349 NA "1/1" "1/1"
## HiC_scaffold_88_20557885 "1|1" "0/1" "1/1"
## HiC_scaffold_89_675045 "1/1" "1/1" "0/0"
## HiC_scaffold_89_2815845 "0/0" "0/0" "0|2"
## HiC_scaffold_89_2843940 "0/0" "0/0" "0/0"
## HiC_scaffold_89_3018830 "1/1" "1|1" "1|1"
## HiC_scaffold_89_13745506 "0/0" "1/1" "0/0"
## HiC_scaffold_89_30006907 "0/1" "1/1" "1/1"
## HiC_scaffold_89_36509388 "0/0" "1|1" "0/1"
## HiC_scaffold_89_38703735 "0/0" NA NA
## HiC_scaffold_89_38764895 "0/0" "1/1" "1/1"
## HiC_scaffold_89_42052609 "0/0" "0/0" "0/1"
## HiC_scaffold_89_42054991 "0/0" "0/0" "1/1"
## HiC_scaffold_89_44306958 "0/1" "1/1" "0/1"
## HiC_scaffold_89_44338206 "1/1" "0/1" "0/0"
## HiC_scaffold_89_45298973 "1/1" NA "1/1"
## HiC_scaffold_9_3529921 "1/1" "0/0" "1|1"
## HiC_scaffold_9_5660454 "0|1" "0|1" "0/0"
## HiC_scaffold_9_5660461 "1|1" "1/1" "1/1"
## HiC_scaffold_9_5854070 "1/1" "1/1" "1/1"
## HiC_scaffold_9_6142415 "0|1" "1|1" "0|1"
## HiC_scaffold_9_6142436 "0|1" "1|1" "0|1"
## HiC_scaffold_9_6143781 "1/1" "1/1" "0/1"
## HiC_scaffold_9_6654825 "1/1" "0/0" "1/1"
## HiC_scaffold_9_7094545 "0/1" NA "1|1"
## HiC_scaffold_9_7100208 "0/0" "1|1" "1|1"
## HiC_scaffold_9_7109988 NA "0/0" "1/1"
## HiC_scaffold_9_7111922 NA "1|1" "1|1"
## HiC_scaffold_9_8235781 "0/0" "1/1" "1/1"
## HiC_scaffold_9_8279558 "1/1" "1/1" "1/1"
## HiC_scaffold_9_15679481 "0/1" "1|1" "0/0"
## HiC_scaffold_9_18082611 "0/0" "0/0" NA
## HiC_scaffold_9_18090830 "0/0" "0/0" "0/0"
## HiC_scaffold_9_30240531 NA "1/1" "1/1"
## HiC_scaffold_90_10418696 NA "0/0" "0/0"
## HiC_scaffold_90_11470224 "1/1" "1/1" "0/0"
## HiC_scaffold_90_13593319 "0/0" "0/0" "0/1"
## HiC_scaffold_90_16260161 "0/0" "0/1" "0/1"
## HiC_scaffold_90_22325499 NA "0/1" "1|1"
## HiC_scaffold_90_23574204 "0/0" NA "0/0"
## HiC_scaffold_90_23609908 "1|1" "0/0" "0/1"
## HiC_scaffold_90_23623078 "0/1" "0/1" "1|1"
## HiC_scaffold_90_23626883 "0/1" "1/1" "1/1"
## HiC_scaffold_90_23812663 "1/1" "1/1" "0/0"
## HiC_scaffold_90_25939283 "1/1" "1/1" "1/1"
## HiC_scaffold_90_25985714 "0/0" "0/0" "0/0"
## HiC_scaffold_90_30751272 "0/0" "0/0" "0/0"
## HiC_scaffold_90_31232025 "1|1" "1|1" "1|1"
## HiC_scaffold_90_31245699 "1/1" "1/1" "1/1"
## HiC_scaffold_90_31527975 NA "0/0" "0/1"
## HiC_scaffold_90_31546172 "0/0" "1|1" "0/0"
## HiC_scaffold_90_38511996 "1|1" "0/0" "1|1"
## HiC_scaffold_90_38511999 "1|1" "0/0" "1|1"
## HiC_scaffold_90_38517279 "0/0" "1/1" "0/0"
## HiC_scaffold_90_40624104 "0/0" "0/1" "1/1"
## HiC_scaffold_91_5644765 "1|1" "1|1" "0/0"
## HiC_scaffold_91_5867214 "0|1" "0/0" "0/0"
## HiC_scaffold_91_5867226 "0|1" "0/0" "0/0"
## HiC_scaffold_91_7704263 "0/0" "1|1" "1|1"
## HiC_scaffold_91_7871360 "1/1" "0/0" NA
## HiC_scaffold_91_8538014 "1/1" "1/1" "1/1"
## HiC_scaffold_91_13230485 "1|1" "1|1" "0/0"
## HiC_scaffold_91_28696118 "1/1" "1/1" "1/1"
## HiC_scaffold_91_28696625 "1|1" "1/1" "1|1"
## HiC_scaffold_91_42177482 "1|1" NA "0/0"
## HiC_scaffold_91_46813640 "0/0" "0|2" "2|2"
## HiC_scaffold_92_23783035 "0/0" "0/0" "0/0"
## HiC_scaffold_92_23783036 "0/0" "0/0" "0/0"
## HiC_scaffold_92_24712793 "0/0" "0/1" NA
## HiC_scaffold_92_28698258 "0/0" NA "0|1"
## HiC_scaffold_92_40691582 "0/0" "0/0" "0/0"
## HiC_scaffold_92_43967712 "0/1" "1/1" "1/1"
## HiC_scaffold_92_47147572 "1|1" "0|1" "0/0"
## HiC_scaffold_92_49042714 "0/0" "0|0" "1|1"
## HiC_scaffold_92_49042715 "0/0" "0|0" "1|1"
## HiC_scaffold_92_53634002 "0/1" "1/1" "1|1"
## HiC_scaffold_92_58211868 "0/1" "1|1" NA
## HiC_scaffold_92_60114155 "0/1" "0/0" "0/0"
## HiC_scaffold_92_63603483 "1/1" "0|1" "0/0"
## HiC_scaffold_92_64797225 NA "0/0" NA
## HiC_scaffold_92_68367476 "0/0" "0/0" "0/0"
## HiC_scaffold_93_1912167 NA NA "0/0"
## HiC_scaffold_93_2485978 "0/0" "0/1" NA
## HiC_scaffold_93_3227638 "0/0" "0/0" "1/1"
## HiC_scaffold_93_3227641 "0/0" "1|1" "0/0"
## HiC_scaffold_93_13971208 "0/0" "0/1" "1/1"
## HiC_scaffold_93_13987080 "1/1" "0/0" "1/1"
## HiC_scaffold_93_21125468 "0/1" NA NA
## HiC_scaffold_93_21845293 NA "0/0" "0/1"
## HiC_scaffold_93_21845310 NA "1|1" "0/0"
## HiC_scaffold_93_21846342 "0/0" "0/0" "1|1"
## HiC_scaffold_93_21846356 "0/0" "1/1" "0/0"
## HiC_scaffold_93_22589723 "1/1" "1/1" "0/0"
## HiC_scaffold_93_22619278 "0/0" "1/1" NA
## HiC_scaffold_93_22631258 NA "0/0" "1|1"
## HiC_scaffold_93_22631266 NA "0/0" "1|1"
## HiC_scaffold_94_3110102 "0/1" "1/1" "1/1"
## HiC_scaffold_94_3205919 "0/0" "1/1" "0/0"
## HiC_scaffold_94_9023846 "0/0" "0/1" "1/1"
## HiC_scaffold_94_11572820 "1/1" NA "1/1"
## HiC_scaffold_94_12368532 "1/1" "1/1" "0/0"
## HiC_scaffold_94_42179418 "0/1" "1/1" "1/1"
## HiC_scaffold_94_42179519 NA "0/0" "0/0"
## HiC_scaffold_94_51646206 "0/0" "0/1" "0/0"
## HiC_scaffold_94_52781289 "0/0" "1/1" "1/1"
## HiC_scaffold_94_53790035 "0/0" "0/1" "1/1"
## HiC_scaffold_94_53792738 "0/0" "0/0" "0/0"
## HiC_scaffold_94_56768905 "0/0" "1|1" "1|1"
## HiC_scaffold_946_81276 "0/0" "1/1" "1/1"
## HiC_scaffold_95_3189690 "1/1" "1/1" "0/1"
## HiC_scaffold_95_4397298 "1|1" "1|1" "1|1"
## HiC_scaffold_95_9469157 "1|1" "0|1" "0/0"
## HiC_scaffold_95_10641411 "0/0" "0/1" "1/1"
## HiC_scaffold_95_10949821 "0/0" "1/1" "0/0"
## HiC_scaffold_95_12993394 "0/0" "0|1" "0/0"
## HiC_scaffold_95_15515793 "0/0" "1|1" "0/0"
## HiC_scaffold_95_15608785 "1|1" "0/0" "0/0"
## HiC_scaffold_95_15609137 "1/1" "0/0" "0/0"
## HiC_scaffold_95_16295316 "0/0" "1/1" "1/1"
## HiC_scaffold_95_22656165 "0|1" "0/0" "0|1"
## HiC_scaffold_95_25885727 "0/1" "0/1" "0/1"
## HiC_scaffold_96_10460019 "1/1" "1/1" "1/1"
## HiC_scaffold_96_27155785 "1/1" "1/1" "1/1"
## HiC_scaffold_96_37939434 "0/0" "0|1" "0/0"
## HiC_scaffold_96_51115048 "0/0" "1/1" "1/1"
## HiC_scaffold_96_51116511 NA "1/1" "1/1"
## HiC_scaffold_96_51915040 "0/0" "0|1" "0/0"
## HiC_scaffold_96_52681287 "0/0" "0/1" NA
## HiC_scaffold_96_53276519 "0/1" "0/1" "0/0"
## HiC_scaffold_97_1736926 "0/0" "0|1" "1|1"
## HiC_scaffold_97_1736994 "0/0" "0/1" "1|1"
## HiC_scaffold_97_3863543 "0/0" "1/1" "0/0"
## HiC_scaffold_97_4200445 "0/0" "0/1" "0/0"
## HiC_scaffold_97_4799162 "1/1" "1/1" "0/0"
## HiC_scaffold_97_5027892 "0/0" "1/1" "1/1"
## HiC_scaffold_97_8007933 "0/0" "1|1" "0/0"
## HiC_scaffold_97_17997210 "0/0" "0/0" "0|1"
## HiC_scaffold_97_18604647 "1/1" "1/1" "1/1"
## HiC_scaffold_97_20239636 "0/1" "0/1" "0/1"
## HiC_scaffold_98_15154096 "0/0" NA "0/0"
## HiC_scaffold_98_22342667 "0/0" "1|1" "0/0"
## HiC_scaffold_98_22634293 "1|1" "1|1" "0/0"
## HiC_scaffold_98_22634294 "1|1" "1|1" "0/0"
## HiC_scaffold_98_22721138 "0|1" "1/1" "1/1"
## HiC_scaffold_98_22869378 "0/0" "0/0" "1/1"
## HiC_scaffold_98_24108405 "0/0" "0/0" NA
## HiC_scaffold_98_27359592 "0/1" "1/1" "1/1"
## HiC_scaffold_98_28549834 "0/1" "0/1" "1/1"
## HiC_scaffold_98_28867520 "1|1" "1|1" "1|1"
## HiC_scaffold_98_28867524 "1|1" "1|1" "1|1"
## HiC_scaffold_98_29431717 "0/1" "0/1" "1|1"
## HiC_scaffold_98_29675109 "0/0" "1/1" "0/0"
## HiC_scaffold_99_1163244 "0/0" "0/0" NA
## HiC_scaffold_99_1451611 "0/0" "0/1" "0/0"
## HiC_scaffold_99_2021961 "0/0" "0/0" "0/0"
## HiC_scaffold_99_5134392 "0/1" "0/1" "1/1"
## HiC_scaffold_99_5239109 "1/1" "1/1" "1/1"
## HiC_scaffold_99_6917738 "1|1" "0/0" "1|1"
## HiC_scaffold_99_11221970 "0/0" "0|1" "0/0"
## HiC_scaffold_99_25982503 "0/0" "1/1" "1/1"
## Tank_2_Crab_1 Tank_2_Crab_2 Tank_2_Crab_3
## HiC_scaffold_1_2523394 "1/1" "0/1" "0/0"
## HiC_scaffold_1_2542157 "0/1" NA "1/1"
## HiC_scaffold_1_2647806 "1/1" "1/1" "1/1"
## HiC_scaffold_1_2970226 NA NA "0/0"
## HiC_scaffold_1_3329447 "2|2" "0/0" "0/0"
## HiC_scaffold_1_3795100 "0/0" NA NA
## HiC_scaffold_10_2221345 "1|1" NA NA
## HiC_scaffold_10_2299490 "0|1" NA "1|1"
## HiC_scaffold_10_2565301 NA "0/0" "1/1"
## HiC_scaffold_10_3864355 "1/1" "0/0" "0/0"
## HiC_scaffold_10_4319900 "1|1" NA "1|1"
## HiC_scaffold_10_4319907 "1|1" NA "1|1"
## HiC_scaffold_10_5404579 NA "0/0" "1/1"
## HiC_scaffold_10_5843373 NA "0/0" "0/0"
## HiC_scaffold_100_854947 "0/0" NA "0/0"
## HiC_scaffold_100_1070817 "0/0" NA "0/0"
## HiC_scaffold_100_2002094 "0/0" "0/0" "2|2"
## HiC_scaffold_100_2002097 "0/0" "0/0" "1|1"
## HiC_scaffold_100_2010331 "1|1" "1|1" "0/0"
## HiC_scaffold_100_5186498 NA NA "1/1"
## HiC_scaffold_100_5828477 "0/0" "1/1" "0/1"
## HiC_scaffold_100_6470419 NA NA "0/0"
## HiC_scaffold_100_6739225 "0/1" "1/1" NA
## HiC_scaffold_100_6739258 "0/0" "1/1" "1|1"
## HiC_scaffold_100_6739264 "0/0" "1/1" "1|1"
## HiC_scaffold_100_6907177 NA "0/0" "0/0"
## HiC_scaffold_100_8384481 "0/0" "1/1" "0|1"
## HiC_scaffold_100_8384495 "0/0" "0/0" "0|1"
## HiC_scaffold_100_9451470 "0/0" "0/0" NA
## HiC_scaffold_100_10464574 "1/1" NA "0/0"
## HiC_scaffold_100_11934792 NA "1|1" "0/0"
## HiC_scaffold_100_11980177 "0|1" "1/1" "1/1"
## HiC_scaffold_100_18465760 "0/0" "0/0" "0/0"
## HiC_scaffold_100_18465762 "0/0" "0/0" "0/0"
## HiC_scaffold_100_18466205 "0/0" "2/2" "0/0"
## HiC_scaffold_100_31738115 NA "0/0" NA
## HiC_scaffold_100_44227362 "1/1" "0/0" "0/1"
## HiC_scaffold_101_12808961 "0/0" "0/0" NA
## HiC_scaffold_101_13897149 NA "1/1" "0/0"
## HiC_scaffold_101_18337279 "1|1" "0/0" "1|1"
## HiC_scaffold_101_20800167 NA NA NA
## HiC_scaffold_102_2260041 "0/0" "1/1" "1/1"
## HiC_scaffold_102_8734519 "0/0" NA "1|1"
## HiC_scaffold_102_10233999 "1|1" "0/0" "1|1"
## HiC_scaffold_102_11446042 "0/0" "0/0" "0/0"
## HiC_scaffold_102_15918694 NA "1/1" "1/1"
## HiC_scaffold_102_15935667 NA "0/0" "0/0"
## HiC_scaffold_102_17442643 "1/1" "1/1" "0/1"
## HiC_scaffold_102_17608969 "0/0" "1/1" NA
## HiC_scaffold_102_20180185 NA NA "1/1"
## HiC_scaffold_102_24788723 "0/1" NA "0/0"
## HiC_scaffold_102_25423729 NA "1|1" "0/0"
## HiC_scaffold_102_39755142 "1/1" "0/0" "0/0"
## HiC_scaffold_102_52046978 "1/1" NA "0/0"
## HiC_scaffold_1027_34152 NA "0/0" "0/0"
## HiC_scaffold_103_601715 "1/1" "1/1" "0/0"
## HiC_scaffold_103_2891384 NA "1/1" "1/1"
## HiC_scaffold_103_8191270 "0/0" "0/1" NA
## HiC_scaffold_103_9521272 NA "0/0" NA
## HiC_scaffold_103_14768909 "0|1" "1|1" NA
## HiC_scaffold_103_19312119 NA "1|1" NA
## HiC_scaffold_103_21284866 "0/0" "1/1" "0/0"
## HiC_scaffold_103_31428453 "1|1" "1|1" "1|1"
## HiC_scaffold_103_42567396 NA "0/0" "1/1"
## HiC_scaffold_103_45921571 NA "0/0" NA
## HiC_scaffold_103_45921573 "0/0" "0/0" NA
## HiC_scaffold_103_49592022 "1|1" "0/0" NA
## HiC_scaffold_103_49620132 NA "1|1" "0/0"
## HiC_scaffold_103_50440915 "0/0" "0/0" "0/0"
## HiC_scaffold_103_51944137 "1/1" NA "0/0"
## HiC_scaffold_103_54308582 "1|1" "1|1" "1|1"
## HiC_scaffold_103_54424067 "1|1" NA "0/0"
## HiC_scaffold_103_56932900 "1/1" "1/1" NA
## HiC_scaffold_103_57470264 "1|1" "1|1" NA
## HiC_scaffold_104_7771140 NA NA "1/1"
## HiC_scaffold_104_9103028 NA "0/0" "1/1"
## HiC_scaffold_104_10633168 "0/1" "0/1" "0/0"
## HiC_scaffold_104_18917031 "0/1" NA "0/0"
## HiC_scaffold_104_20851902 "0/1" "0/0" NA
## HiC_scaffold_104_24451803 "1/1" "0/0" NA
## HiC_scaffold_104_28597688 "0/1" "1/1" NA
## HiC_scaffold_104_40927999 "0/1" NA NA
## HiC_scaffold_104_46490074 NA "1/1" "0/0"
## HiC_scaffold_104_49759053 "0/0" "0/0" NA
## HiC_scaffold_104_57267896 "1/1" "0/0" "1/1"
## HiC_scaffold_104_62570010 NA "1/1" NA
## HiC_scaffold_11_32804173 NA NA "0/0"
## HiC_scaffold_11_34516508 "1/1" "1/1" "1/1"
## HiC_scaffold_11_35332996 "1/1" "0/0" "1/1"
## HiC_scaffold_11_35904027 "1/1" "1/1" "0/1"
## HiC_scaffold_11_41539793 "0/0" "0/0" NA
## HiC_scaffold_11_41604080 "1/1" NA "1/1"
## HiC_scaffold_11_42855323 NA "0/0" "0/1"
## HiC_scaffold_11_45339409 "1/1" NA "0/0"
## HiC_scaffold_11_45339410 "0/0" NA "0/0"
## HiC_scaffold_11_47544035 "1/1" "1/1" "1|1"
## HiC_scaffold_12_7515164 "0/0" "0/0" "0/0"
## HiC_scaffold_12_12640100 "1/1" NA "0/0"
## HiC_scaffold_12_12826705 "0/0" "0/1" NA
## HiC_scaffold_12_14899285 "0/0" "0/0" NA
## HiC_scaffold_12_17465672 "0/1" "0/0" "1/1"
## HiC_scaffold_12_22770710 "0/0" "0/0" NA
## HiC_scaffold_12_32318964 "1|1" "1|1" "1|1"
## HiC_scaffold_12_35136373 "0|1" NA "0/0"
## HiC_scaffold_12_40687860 "1|1" "0/0" "1|1"
## HiC_scaffold_13_2938168 "0/1" NA "1/1"
## HiC_scaffold_13_20350974 "1/1" NA NA
## HiC_scaffold_13_27759554 "1/1" "1/1" NA
## HiC_scaffold_13_28146828 "0|2" "0|1" "0/0"
## HiC_scaffold_13_28146830 "0|2" "0|0" "0/0"
## HiC_scaffold_13_28925343 "1/1" "0/2" "1/1"
## HiC_scaffold_13_31913129 "0/0" "0/0" "0/0"
## HiC_scaffold_13_32078924 "0/0" "0/0" "0/0"
## HiC_scaffold_13_33864805 NA NA "1/1"
## HiC_scaffold_13_34892542 "0/0" "0/0" NA
## HiC_scaffold_13_34893103 "1|1" NA NA
## HiC_scaffold_13_35762551 "0|1" NA "0|1"
## HiC_scaffold_13_35881745 "1|1" "1|1" NA
## HiC_scaffold_13_35881749 "1|1" "1|1" NA
## HiC_scaffold_14_3843214 "0/0" "1/1" "0/0"
## HiC_scaffold_14_25884262 "0/1" "1|2" "0/2"
## HiC_scaffold_14_27050415 NA "1/1" "1/1"
## HiC_scaffold_14_27118495 "0/0" NA "1/1"
## HiC_scaffold_14_27277222 NA "2|2" "0/0"
## HiC_scaffold_14_29215814 NA "0/0" NA
## HiC_scaffold_15_2460398 "1|1" "0|1" "1|1"
## HiC_scaffold_15_2462980 NA NA NA
## HiC_scaffold_15_2467289 "0/0" NA "1/1"
## HiC_scaffold_15_5669141 NA "0/0" "0/0"
## HiC_scaffold_15_13700694 "0/0" "0/0" "0/0"
## HiC_scaffold_15_17825275 "0/0" "0/0" "1|1"
## HiC_scaffold_15_19938475 NA "1/1" "1/1"
## HiC_scaffold_15_23865956 "1|1" "1|1" "1|1"
## HiC_scaffold_15_28837774 "1|1" "1/1" "0/0"
## HiC_scaffold_15_28837810 "0/0" "0/0" NA
## HiC_scaffold_15_28837823 "0/0" "0/0" NA
## HiC_scaffold_15_28837835 "0/0" "0/0" NA
## HiC_scaffold_15_28837841 "0/0" "0/0" NA
## HiC_scaffold_15_28837854 "1/1" NA NA
## HiC_scaffold_15_34827832 "0/0" NA NA
## HiC_scaffold_15_34893807 "0/0" "0/0" "0/0"
## HiC_scaffold_15_35327348 NA "0/0" "0/0"
## HiC_scaffold_15_42161112 "0/0" NA NA
## HiC_scaffold_15_42164926 "0/0" "0/0" "0/0"
## HiC_scaffold_15_42164946 NA "0/0" "0/1"
## HiC_scaffold_15_46289572 NA NA "0/0"
## HiC_scaffold_15_50591576 "0/0" "1|1" NA
## HiC_scaffold_15_50759128 "0/0" "0/0" NA
## HiC_scaffold_15_51188336 "1|1" NA NA
## HiC_scaffold_15_54726640 NA NA "1/1"
## HiC_scaffold_15_54788235 NA NA "0/1"
## HiC_scaffold_15_56162375 "0/0" NA "0/0"
## HiC_scaffold_15_61091106 "1/1" "0/0" "1/1"
## HiC_scaffold_15_61464359 "0/0" "1/1" NA
## HiC_scaffold_15_61510386 "0/0" NA "1/1"
## HiC_scaffold_15_62309788 "0/0" "0|1" "1|1"
## HiC_scaffold_15_62309793 "0/0" "1|1" "1|1"
## HiC_scaffold_15_62771254 "1/1" "0/0" "0/0"
## HiC_scaffold_15_63493927 NA "1/1" "1/1"
## HiC_scaffold_15_64997502 "1/1" NA "0/0"
## HiC_scaffold_15_65007865 "1|1" "1|1" NA
## HiC_scaffold_15_65007879 "0/0" "0/1" "0/0"
## HiC_scaffold_15_66038529 "0/0" NA "1/1"
## HiC_scaffold_15_69811281 "1/1" NA "0/0"
## HiC_scaffold_16_14205925 "1/1" "1/1" "1/1"
## HiC_scaffold_16_30404047 "0|1" "0/0" NA
## HiC_scaffold_16_57413288 "1|1" "1|1" "1|1"
## HiC_scaffold_16_63687578 "0/0" NA "0/0"
## HiC_scaffold_16_74138787 NA "1/1" "0/0"
## HiC_scaffold_16_74140106 "0/0" "1/1" "0/0"
## HiC_scaffold_16_76276015 NA "1/1" "0/0"
## HiC_scaffold_17_11390873 "1|1" "0/0" "1/1"
## HiC_scaffold_17_12551128 "1/1" "1/1" "1/1"
## HiC_scaffold_17_16615612 "0/1" NA "0/0"
## HiC_scaffold_17_18838093 "0/0" "1|1" "0/0"
## HiC_scaffold_17_22801072 "0/1" "1/1" NA
## HiC_scaffold_17_23788599 "0/0" NA "0/0"
## HiC_scaffold_17_29383895 "0|0" "0/0" NA
## HiC_scaffold_17_29618771 "0/0" "0/0" "1/1"
## HiC_scaffold_17_29976139 "0/0" NA "1/1"
## HiC_scaffold_17_31107213 NA NA "1/1"
## HiC_scaffold_17_32493792 "0/0" "1/1" "0/0"
## HiC_scaffold_17_33732050 "1|1" "1|1" "1/1"
## HiC_scaffold_17_33801314 "0/0" "1|1" NA
## HiC_scaffold_17_34081889 "1/1" "1/1" "1/1"
## HiC_scaffold_18_227565 "1/1" "1/1" "0/0"
## HiC_scaffold_18_1213486 "1/1" NA "1/1"
## HiC_scaffold_18_1701312 "0/0" "0/0" "0/0"
## HiC_scaffold_18_3506437 "1/1" "1/1" NA
## HiC_scaffold_18_6304978 "1/1" "1/1" "0/0"
## HiC_scaffold_18_6351493 "1/1" "1/1" "0/1"
## HiC_scaffold_18_6358009 NA "0/0" "1|1"
## HiC_scaffold_18_10770701 "0/0" NA "1/1"
## HiC_scaffold_18_13342858 "1/1" "1/1" "0/0"
## HiC_scaffold_18_20045832 NA "0/0" "0/0"
## HiC_scaffold_18_22682683 "0/1" "0/0" "0/1"
## HiC_scaffold_18_26337790 NA "1|1" "0/0"
## HiC_scaffold_18_48929148 "0/0" NA "0/0"
## HiC_scaffold_18_51490626 "0/0" NA "1/1"
## HiC_scaffold_18_53723137 "0/0" "1/1" NA
## HiC_scaffold_18_54496637 "0/0" "0/0" "0/0"
## HiC_scaffold_18_55294388 "0/0" NA "0|1"
## HiC_scaffold_19_279726 "0/0" "0/1" NA
## HiC_scaffold_19_6426572 "0/0" "0/0" "1/1"
## HiC_scaffold_19_6575887 "1|1" "0/0" "0/0"
## HiC_scaffold_19_7755254 "0/0" "0/0" "0/1"
## HiC_scaffold_19_9301421 "0/0" NA "0/1"
## HiC_scaffold_19_9357388 NA "1|1" "1|1"
## HiC_scaffold_19_9778841 "1/1" NA "0/0"
## HiC_scaffold_19_10928976 "1|1" "1|1" "0/0"
## HiC_scaffold_19_10928980 "1|1" "1|1" "0/0"
## HiC_scaffold_19_10928982 "0/0" "0/0" "1|1"
## HiC_scaffold_19_11106347 "0|1" "0/0" "0/0"
## HiC_scaffold_19_11590139 NA "0/0" NA
## HiC_scaffold_19_11665300 "0/1" NA NA
## HiC_scaffold_19_14793640 "0/0" "0/0" NA
## HiC_scaffold_19_22112743 "1|1" "0/0" "0/0"
## HiC_scaffold_19_25473671 NA NA "1/1"
## HiC_scaffold_19_25473692 NA NA "0/1"
## HiC_scaffold_19_28110829 "0/0" NA "1|1"
## HiC_scaffold_19_28465002 "1/1" "1/1" "0/1"
## HiC_scaffold_19_28465167 "0|1" "1|1" "1/1"
## HiC_scaffold_19_30106869 "0/0" "1|1" "0/0"
## HiC_scaffold_19_52538858 NA "1/1" "1/1"
## HiC_scaffold_19_52596196 "0/0" "0/0" "0/0"
## HiC_scaffold_19_53482993 "0/1" "0/0" NA
## HiC_scaffold_19_54312637 "1/1" "1/1" "1/1"
## HiC_scaffold_19_59345841 "1|1" NA "0/0"
## HiC_scaffold_2_3296144 "1|1" "1|1" "1|1"
## HiC_scaffold_2_3418589 "0/0" "0/0" "1/1"
## HiC_scaffold_2_3864060 "0/0" "1/1" "1/1"
## HiC_scaffold_2_4104755 NA "0/0" NA
## HiC_scaffold_2_4104758 NA "0/0" NA
## HiC_scaffold_2_8316721 "0|0" NA NA
## HiC_scaffold_2_9098999 "0/0" NA NA
## HiC_scaffold_2_10457537 "0/0" NA NA
## HiC_scaffold_2_19048125 "0/0" NA NA
## HiC_scaffold_2_21748201 "1|1" "1/1" NA
## HiC_scaffold_2_33187764 NA "0/0" "0/0"
## HiC_scaffold_2_33187770 NA "0/0" "0/0"
## HiC_scaffold_2_33187959 "0/0" "0/0" NA
## HiC_scaffold_2_41603929 "0/1" NA NA
## HiC_scaffold_2_52233191 "1/1" "0/0" NA
## HiC_scaffold_2_52400748 NA "0/0" "1/1"
## HiC_scaffold_2_52403793 "1|1" "1|1" NA
## HiC_scaffold_2_52799130 "1/1" "1/1" "0/0"
## HiC_scaffold_20_10332897 "1/1" NA "0/0"
## HiC_scaffold_20_17198418 "1|1" "1|1" "0/0"
## HiC_scaffold_20_17915398 "0/0" "0/0" "1|1"
## HiC_scaffold_20_18872955 "0/1" "0/0" "0/0"
## HiC_scaffold_20_19055301 "1/1" "1/1" "1/1"
## HiC_scaffold_20_19150094 "0/0" "1/1" "0/1"
## HiC_scaffold_20_20651022 NA "1|1" "0/1"
## HiC_scaffold_20_22651296 NA "1/1" NA
## HiC_scaffold_21_2009156 "0/1" "0/0" "0/0"
## HiC_scaffold_21_2435648 "0/0" "0/0" NA
## HiC_scaffold_21_7164210 "1|1" NA NA
## HiC_scaffold_21_9786512 "1/1" "0/0" NA
## HiC_scaffold_21_12424922 "1|1" NA "1/1"
## HiC_scaffold_21_17966833 "1/1" "1/1" NA
## HiC_scaffold_21_19025429 "0/1" NA "0/0"
## HiC_scaffold_21_20058318 "0/0" "0/1" "1/1"
## HiC_scaffold_21_20562855 "1|1" "1|1" "0|1"
## HiC_scaffold_21_20661860 "0/1" "0/0" NA
## HiC_scaffold_21_20895395 "0/0" "0/0" "0/0"
## HiC_scaffold_21_21158811 "2|2" "1|1" "0/0"
## HiC_scaffold_21_22250857 "0/0" "0/1" "0/0"
## HiC_scaffold_21_22250866 "1/1" "0/0" "0/0"
## HiC_scaffold_21_22257737 "0/1" "1|1" "0/0"
## HiC_scaffold_21_22644667 "0|1" NA "0/0"
## HiC_scaffold_21_22644673 "0|1" NA "0/0"
## HiC_scaffold_21_22666888 "1/1" "0/0" "1/1"
## HiC_scaffold_21_23905416 "0/0" NA "0/0"
## HiC_scaffold_21_23981651 "0/0" NA "0/1"
## HiC_scaffold_21_24287068 NA "0/0" "0/0"
## HiC_scaffold_21_30798434 "0|1" "0/0" "0/1"
## HiC_scaffold_21_35006232 NA "1/1" NA
## HiC_scaffold_21_35779294 "0/1" NA NA
## HiC_scaffold_22_124910 "0/1" "0/0" NA
## HiC_scaffold_22_751023 NA "0/0" "0/0"
## HiC_scaffold_22_1042644 "0/0" "0/0" NA
## HiC_scaffold_22_1044708 "0/0" "1/1" "0/0"
## HiC_scaffold_22_2174911 NA "1/1" "0/0"
## HiC_scaffold_22_3431122 "0/0" NA "0|1"
## HiC_scaffold_22_3446787 "0|1" NA NA
## HiC_scaffold_22_3451756 "1/1" "1|1" "0/0"
## HiC_scaffold_22_3720435 "0/1" "0/1" NA
## HiC_scaffold_22_4065466 "0/0" "1|1" "0/0"
## HiC_scaffold_22_4739889 "2|2" "0/0" NA
## HiC_scaffold_22_4918263 NA "1|1" NA
## HiC_scaffold_22_5750008 "1/1" NA "0/0"
## HiC_scaffold_22_5769942 "1/1" "0/0" "0/0"
## HiC_scaffold_22_28264522 "0/0" "0/1" "0/0"
## HiC_scaffold_22_28265115 "0/0" NA "1/1"
## HiC_scaffold_22_29205851 "1/2" "1/1" "1/1"
## HiC_scaffold_22_29822340 "0/1" "1/1" "0/0"
## HiC_scaffold_22_30797357 "0/0" NA NA
## HiC_scaffold_22_32042610 NA NA "0/0"
## HiC_scaffold_23_11215327 "1/1" "0/0" "0/0"
## HiC_scaffold_23_27081333 "0/1" NA "0/0"
## HiC_scaffold_23_28672255 "0/1" NA NA
## HiC_scaffold_23_29218828 "0/0" "0/0" NA
## HiC_scaffold_23_32528768 "0/0" "0/0" "0/0"
## HiC_scaffold_23_32669383 "0/1" NA "0/1"
## HiC_scaffold_23_33199663 "0/0" "0/0" "0/0"
## HiC_scaffold_23_33245843 "1/1" NA NA
## HiC_scaffold_23_40824545 "0/0" "1|1" "0|1"
## HiC_scaffold_23_41504669 "0|1" NA "1/1"
## HiC_scaffold_24_16622654 "1/1" "1/1" NA
## HiC_scaffold_24_16622681 "1/1" "1/1" NA
## HiC_scaffold_24_19851560 "0/0" "1|1" "1|1"
## HiC_scaffold_24_20590563 "0/1" NA "0/0"
## HiC_scaffold_24_27745754 "0/1" NA "0/0"
## HiC_scaffold_24_28763699 "1|1" "1|1" NA
## HiC_scaffold_24_28763703 "1|1" "1|1" NA
## HiC_scaffold_25_4135969 "1/1" NA "0/0"
## HiC_scaffold_25_4201677 "0/1" "1/1" "0/0"
## HiC_scaffold_25_5872831 NA "0/0" "0/1"
## HiC_scaffold_25_6879627 NA "0/0" "0/0"
## HiC_scaffold_25_8172813 "1/1" "1/1" "1/1"
## HiC_scaffold_25_9969507 "0/1" "0|1" "0/0"
## HiC_scaffold_25_10691336 "1/1" "0/0" "1/1"
## HiC_scaffold_25_21286462 "0/0" NA "1/1"
## HiC_scaffold_26_4086662 NA "0/0" NA
## HiC_scaffold_26_7539671 "0/0" NA NA
## HiC_scaffold_26_8348511 NA NA "0/0"
## HiC_scaffold_26_9043748 "1|1" NA "1|1"
## HiC_scaffold_26_9045655 NA "1|1" "1|1"
## HiC_scaffold_26_11253181 "0/0" "1|1" "0/0"
## HiC_scaffold_26_17828344 NA "1/1" "1/1"
## HiC_scaffold_26_17932520 "0/1" "1/1" "1/1"
## HiC_scaffold_26_17941459 "0/0" "0/0" "0/0"
## HiC_scaffold_26_17960877 "0/1" "1/1" "1/1"
## HiC_scaffold_26_18284041 "0/0" "0/0" "0/1"
## HiC_scaffold_26_18288701 "1/1" "1|1" NA
## HiC_scaffold_26_18294422 "0/1" "0|1" "0/0"
## HiC_scaffold_26_21307365 NA "1|1" NA
## HiC_scaffold_26_22159924 "0/0" NA "1/1"
## HiC_scaffold_26_22161535 "1/1" NA NA
## HiC_scaffold_26_24794176 "0/1" "0/0" "1/1"
## HiC_scaffold_26_28538113 "1|1" "1|1" "1|1"
## HiC_scaffold_26_29031357 "1/1" "1/1" "1/1"
## HiC_scaffold_26_29163462 "0/1" "0/0" NA
## HiC_scaffold_26_42631018 "0/0" "0/0" "1|1"
## HiC_scaffold_26_42634814 "0/1" NA "0/0"
## HiC_scaffold_26_43483190 "0/0" NA "0/1"
## HiC_scaffold_26_49955889 NA NA "1/1"
## HiC_scaffold_26_58342510 "0/0" "1|1" "0/1"
## HiC_scaffold_27_1496120 "0/0" "1|1" "1|1"
## HiC_scaffold_27_1947057 "0/0" "1|1" "0/0"
## HiC_scaffold_27_2359058 NA "0/1" NA
## HiC_scaffold_27_2699645 NA NA "0/0"
## HiC_scaffold_27_4425475 "0/0" "1|1" "1/1"
## HiC_scaffold_27_7539469 "0/0" NA "2|2"
## HiC_scaffold_27_7777122 NA NA "0/0"
## HiC_scaffold_27_16657070 "0/0" "1/1" "0/0"
## HiC_scaffold_27_24539255 "0/0" "0/1" "1|1"
## HiC_scaffold_27_34642359 NA "0/0" "1|1"
## HiC_scaffold_27_34647277 "1|1" "1|1" "0/0"
## HiC_scaffold_27_35380535 "0/0" "1/1" "1/1"
## HiC_scaffold_27_35383230 NA "0/0" NA
## HiC_scaffold_28_21261390 "0/0" "0/0" "1|1"
## HiC_scaffold_28_24490442 NA "1/1" "0/0"
## HiC_scaffold_28_25601927 "1/1" "0/0" "1/1"
## HiC_scaffold_28_31793968 "0/0" NA NA
## HiC_scaffold_28_32126687 NA "0/0" "0/0"
## HiC_scaffold_28_34779518 "1/1" NA NA
## HiC_scaffold_28_36042491 "0/1" NA "1/1"
## HiC_scaffold_28_36692361 "0/0" "0/1" "0/0"
## HiC_scaffold_28_38672993 "0/0" "0/0" "0/0"
## HiC_scaffold_28_39640526 "0/0" NA "0/0"
## HiC_scaffold_28_40169242 "0/0" "1/1" "1/1"
## HiC_scaffold_28_41059640 "1|1" NA "1|1"
## HiC_scaffold_28_42514830 "0/1" "1/1" "0/1"
## HiC_scaffold_28_42601570 "1/1" NA "0/1"
## HiC_scaffold_28_42601585 "0/0" NA "0/0"
## HiC_scaffold_28_43018803 "0/1" "0/0" "0/1"
## HiC_scaffold_28_43036165 "1/1" "1/1" "0/1"
## HiC_scaffold_29_344317 NA "0/1" "0/0"
## HiC_scaffold_29_3811176 "0/1" "0/0" "0/0"
## HiC_scaffold_29_6073993 NA NA "0/0"
## HiC_scaffold_29_6415222 "0/0" "0/0" NA
## HiC_scaffold_29_8224424 "0/0" NA "0/0"
## HiC_scaffold_29_11153624 "1/1" "0/0" "0/0"
## HiC_scaffold_29_11153712 "1/1" NA "0/0"
## HiC_scaffold_29_11167966 "1/1" "1/1" "0/0"
## HiC_scaffold_29_11491468 "0/0" "1/1" NA
## HiC_scaffold_29_12103558 "0/0" "1|1" NA
## HiC_scaffold_29_14279322 "0/1" NA NA
## HiC_scaffold_29_14913907 "0|1" NA "0|1"
## HiC_scaffold_29_16378276 "1/1" "1/1" "1/1"
## HiC_scaffold_29_20635937 "0/1" "1/1" "0/0"
## HiC_scaffold_29_20636787 "0/0" "0/0" "0/0"
## HiC_scaffold_29_22560215 "1/1" NA "0/0"
## HiC_scaffold_29_22561144 NA "1/1" "1/1"
## HiC_scaffold_29_24017849 NA NA "0/0"
## HiC_scaffold_29_31603590 "0/0" "0/0" "0/0"
## HiC_scaffold_3_21670751 "0/0" NA "1/1"
## HiC_scaffold_3_24747014 NA "0/1" "0/0"
## HiC_scaffold_3_27861792 "1/1" "0/0" "0/0"
## HiC_scaffold_3_28057869 "0/0" "0/0" NA
## HiC_scaffold_3_28441436 "0/0" NA NA
## HiC_scaffold_3_28694380 "1|1" "0/0" "0/0"
## HiC_scaffold_3_31361023 "0/1" NA "0/0"
## HiC_scaffold_3_31960572 NA NA "0/0"
## HiC_scaffold_3_32157169 "0/0" NA NA
## HiC_scaffold_3_32159152 "0/0" "1/1" NA
## HiC_scaffold_3_34124237 NA "0/0" "0/0"
## HiC_scaffold_30_14199802 "0/0" NA "0/0"
## HiC_scaffold_30_16052331 "0/1" "1/1" "1/1"
## HiC_scaffold_30_19914075 NA "0/1" "0/1"
## HiC_scaffold_30_20688783 "1/1" "0/0" "0/1"
## HiC_scaffold_30_21446076 NA "0/2" "0/0"
## HiC_scaffold_30_21598563 "1/1" "0/0" "0/0"
## HiC_scaffold_30_22155728 "0|1" "0/0" "0/0"
## HiC_scaffold_31_687411 "0/0" "0/1" "0/0"
## HiC_scaffold_31_3224722 "0|1" "0/0" NA
## HiC_scaffold_31_3574854 NA "0/0" "0/0"
## HiC_scaffold_31_5899551 NA "1/1" "1/1"
## HiC_scaffold_31_5911491 "0/0" NA NA
## HiC_scaffold_31_6297680 "0/0" "1/1" "0/0"
## HiC_scaffold_31_12394016 "0/1" "1|1" "0/0"
## HiC_scaffold_31_12394040 "0|1" "0/0" "1|1"
## HiC_scaffold_31_18612650 "1/1" "1/1" "0/0"
## HiC_scaffold_32_4446859 "0/0" "0/0" "0/0"
## HiC_scaffold_32_5274796 "0/0" "0/1" "0/0"
## HiC_scaffold_32_5275108 "1/1" NA "0/0"
## HiC_scaffold_32_5282358 "0/0" "1/1" NA
## HiC_scaffold_32_5450203 NA "0/0" "1|1"
## HiC_scaffold_32_44200178 NA NA "1/1"
## HiC_scaffold_33_638523 NA "0/0" NA
## HiC_scaffold_33_44489563 "0|0" "0/0" NA
## HiC_scaffold_33_44489988 "0/0" "1/1" "1/1"
## HiC_scaffold_33_47080180 "0/0" NA NA
## HiC_scaffold_33_47495907 "0/0" "0/0" "0/0"
## HiC_scaffold_33_51865876 NA "0/0" "0/0"
## HiC_scaffold_34_1096982 NA NA NA
## HiC_scaffold_34_6091943 "1|1" "1|1" "1|1"
## HiC_scaffold_34_6100160 "0/0" "1|1" NA
## HiC_scaffold_34_24368584 "0/0" "0/0" "0/0"
## HiC_scaffold_35_3233120 "0/1" "0/0" "1/1"
## HiC_scaffold_35_3253574 "0/1" "1/1" "1/1"
## HiC_scaffold_35_5512296 NA NA NA
## HiC_scaffold_35_15114788 "1/1" "0/1" "1/1"
## HiC_scaffold_35_21214090 "0/0" NA "0/0"
## HiC_scaffold_35_21462564 "0/1" "0/0" NA
## HiC_scaffold_35_22746783 "0/1" "0/1" "1/1"
## HiC_scaffold_35_22747085 "0|1" "0/0" "0/0"
## HiC_scaffold_35_23059580 "0/0" "0/0" "1/1"
## HiC_scaffold_35_23158882 NA "0/0" "0/0"
## HiC_scaffold_35_23261143 NA "1/1" "1|1"
## HiC_scaffold_35_24403602 "1|1" "1/1" "0/0"
## HiC_scaffold_35_24403620 "0/0" "1/1" "0/0"
## HiC_scaffold_35_24993986 "1|1" NA NA
## HiC_scaffold_35_24993998 "1|1" NA NA
## HiC_scaffold_36_1538038 "1/1" NA "0/0"
## HiC_scaffold_36_2464728 "1/1" "0|1" NA
## HiC_scaffold_36_5489050 "0/0" "0/0" "1/1"
## HiC_scaffold_36_9673981 "0/0" "0/0" "1|1"
## HiC_scaffold_36_9674127 "0/0" "1/1" "1/1"
## HiC_scaffold_36_9674756 NA NA NA
## HiC_scaffold_36_9676329 "1/1" "1/1" NA
## HiC_scaffold_36_12304516 NA "1/1" "0/1"
## HiC_scaffold_36_12515555 NA NA "1|1"
## HiC_scaffold_36_13092647 "0/0" "1|1" "1|1"
## HiC_scaffold_36_13766994 "1/1" "1/1" "1/1"
## HiC_scaffold_36_14567741 "1/1" "1/1" "1/1"
## HiC_scaffold_36_15530578 "1|1" NA NA
## HiC_scaffold_37_679894 "1/1" "1/1" NA
## HiC_scaffold_37_916693 "0/0" "0/0" "0/0"
## HiC_scaffold_37_928146 "0/0" NA NA
## HiC_scaffold_37_1256768 "1|1" NA NA
## HiC_scaffold_37_1270034 NA "1/1" NA
## HiC_scaffold_37_1770997 "0/0" NA "0/0"
## HiC_scaffold_37_1798298 "1/1" "0/0" "0/0"
## HiC_scaffold_37_2010342 NA "0/0" "0/0"
## HiC_scaffold_37_2141526 NA "0/0" "1/1"
## HiC_scaffold_37_3952190 "0/0" "1|1" "0/0"
## HiC_scaffold_37_3952215 "0/0" "1|1" "0/0"
## HiC_scaffold_37_9915037 NA NA "0/0"
## HiC_scaffold_38_5383430 "0/0" "0/0" "0/0"
## HiC_scaffold_38_5668363 "1/1" "0/0" "0/0"
## HiC_scaffold_38_5879849 NA NA NA
## HiC_scaffold_38_5880155 NA NA "0/1"
## HiC_scaffold_38_10612790 "0/0" NA "0/0"
## HiC_scaffold_38_11940240 "1/1" NA "2|2"
## HiC_scaffold_38_12878826 "0/0" NA "1|1"
## HiC_scaffold_38_12959698 "1/1" "1/1" "0/0"
## HiC_scaffold_38_13087368 NA "1/1" NA
## HiC_scaffold_38_13480648 "0/0" NA NA
## HiC_scaffold_38_13965243 "1/1" "0/0" NA
## HiC_scaffold_38_14089955 NA "0/0" NA
## HiC_scaffold_38_14408072 "0/0" "0/0" NA
## HiC_scaffold_38_14931216 "0/1" "1/1" "0/0"
## HiC_scaffold_38_14978356 NA "0/0" "0/0"
## HiC_scaffold_38_14978367 NA "0/0" "0/0"
## HiC_scaffold_38_15292863 NA "0/0" "0/0"
## HiC_scaffold_38_15306135 "0/0" "0/0" "0/0"
## HiC_scaffold_38_16077506 NA NA "0/0"
## HiC_scaffold_38_16138965 "1/1" "0/1" NA
## HiC_scaffold_38_16226040 NA NA "1/1"
## HiC_scaffold_39_1393769 "0/0" "0/0" "1|1"
## HiC_scaffold_39_2014970 "1|1" "0/0" NA
## HiC_scaffold_39_2014982 "1|1" "0/0" NA
## HiC_scaffold_39_2014985 "1|1" "0/0" NA
## HiC_scaffold_39_2426443 NA "0/0" "0/0"
## HiC_scaffold_39_2485330 NA "1/1" "0/0"
## HiC_scaffold_39_3350506 NA NA "1|1"
## HiC_scaffold_39_5897388 NA NA "0/0"
## HiC_scaffold_39_17631133 "0/0" NA NA
## HiC_scaffold_4_12107187 NA "0/0" "1/1"
## HiC_scaffold_4_18241670 "1|1" "1|1" "1|1"
## HiC_scaffold_4_18241723 "1/1" "1|1" "1|1"
## HiC_scaffold_4_22418566 "0/0" "0/0" "0/0"
## HiC_scaffold_4_27899990 "1|1" NA "0/0"
## HiC_scaffold_4_35575118 NA NA NA
## HiC_scaffold_4_38000967 NA "1/1" "1/1"
## HiC_scaffold_4_50654021 "0/0" "0/0" "0/0"
## HiC_scaffold_40_2243415 "0/1" "0/0" "1/1"
## HiC_scaffold_40_3000572 "0/0" "0/0" NA
## HiC_scaffold_40_3014177 "0/0" NA "1/1"
## HiC_scaffold_40_3027900 "0/0" NA "0/0"
## HiC_scaffold_40_3143834 "0/0" NA "1/1"
## HiC_scaffold_40_3843942 "0/0" "0/1" "0/0"
## HiC_scaffold_40_3847620 "0/0" "0/0" "0/0"
## HiC_scaffold_40_3891007 "0/1" "0/1" "1/1"
## HiC_scaffold_40_3920667 NA NA "2/2"
## HiC_scaffold_40_4177963 "0/0" "0/0" NA
## HiC_scaffold_40_4819107 "1/1" "1/1" "0/0"
## HiC_scaffold_40_4819834 "0/0" "0/0" "0/0"
## HiC_scaffold_40_5788271 "0/0" "0/0" NA
## HiC_scaffold_40_5965269 "0/0" NA "0/0"
## HiC_scaffold_40_6204154 "0/0" "0/0" "1/1"
## HiC_scaffold_40_8387917 "0/0" "1|1" "0/0"
## HiC_scaffold_41_3235384 "0/0" "0/1" "0/0"
## HiC_scaffold_41_3583000 "0/1" "0/0" "1/1"
## HiC_scaffold_41_5334504 "1/1" "1/1" "1/1"
## HiC_scaffold_41_5387631 "0/0" "1|1" NA
## HiC_scaffold_41_6423426 "0/0" "0/0" "1/1"
## HiC_scaffold_41_14359947 "1/1" "1/1" "0/0"
## HiC_scaffold_41_24007593 NA "0/0" NA
## HiC_scaffold_41_26225447 "1|1" NA NA
## HiC_scaffold_41_28626484 "0/0" NA "1/1"
## HiC_scaffold_41_28660620 "1|1" "0/0" NA
## HiC_scaffold_41_31007688 "0/0" NA "0/0"
## HiC_scaffold_42_1131084 "0/0" NA "0/1"
## HiC_scaffold_42_1818523 "0/1" "1/1" "0/0"
## HiC_scaffold_42_2165002 "1/2" "0/0" "0/0"
## HiC_scaffold_42_2711332 "0/0" "0/0" "1|1"
## HiC_scaffold_42_6142699 "1/1" NA "0/1"
## HiC_scaffold_42_6744976 "1/1" NA "1/1"
## HiC_scaffold_42_8066919 "0/0" "0/0" NA
## HiC_scaffold_42_8068292 "0/0" "1|1" "0/1"
## HiC_scaffold_42_12487888 "0/0" NA NA
## HiC_scaffold_42_41366687 "0/0" "1/1" NA
## HiC_scaffold_42_47313337 "0/0" "0/0" "0/0"
## HiC_scaffold_42_47313338 "0/0" "0/0" "0/0"
## HiC_scaffold_42_50784971 NA "1|1" "0/0"
## HiC_scaffold_42_50784977 "0/0" "1|1" "0/0"
## HiC_scaffold_42_50784981 NA "0/0" "1/1"
## HiC_scaffold_42_51916989 NA "1/1" "1/1"
## HiC_scaffold_43_3842003 "1/1" "1/1" "1/1"
## HiC_scaffold_43_14140861 "1|1" "0/1" "0/0"
## HiC_scaffold_43_15053605 "1/1" "1|1" "1/1"
## HiC_scaffold_43_17289945 "1|1" "0/0" "0/0"
## HiC_scaffold_43_29967704 "1/1" NA NA
## HiC_scaffold_43_35745831 "1|1" "0|1" "0/0"
## HiC_scaffold_43_37627949 NA "0/0" "0/0"
## HiC_scaffold_43_37628126 "1/1" "1/1" "0/1"
## HiC_scaffold_43_44017118 "0/0" "0/0" "0/0"
## HiC_scaffold_43_55124138 "0/0" "0/0" "1|1"
## HiC_scaffold_43_60107326 NA "1|1" NA
## HiC_scaffold_43_61359386 "1/1" "0/0" NA
## HiC_scaffold_43_61702593 "1|1" "0|1" NA
## HiC_scaffold_43_61702606 "1|1" "0|1" NA
## HiC_scaffold_43_61702721 NA "1|1" NA
## HiC_scaffold_43_61702738 "1/1" "0/0" NA
## HiC_scaffold_43_62511703 "0/0" "1|1" "1|1"
## HiC_scaffold_43_64069457 NA NA "0/0"
## HiC_scaffold_43_64577269 "1/1" NA "1/1"
## HiC_scaffold_44_1920144 NA "0/1" "0/0"
## HiC_scaffold_44_2148035 "0/0" "0/0" "0/1"
## HiC_scaffold_44_2568167 "0/0" "0/0" NA
## HiC_scaffold_45_4180070 NA "1|1" "1/1"
## HiC_scaffold_45_4797754 "0/0" "0/0" "0/0"
## HiC_scaffold_45_5911123 "0/0" "0/0" "0/0"
## HiC_scaffold_45_6958990 "1/1" "1/1" "1/1"
## HiC_scaffold_45_8516216 "1|1" "1|1" "1|1"
## HiC_scaffold_45_10191213 "1/1" "1/1" NA
## HiC_scaffold_45_12005885 "1/1" "1/1" NA
## HiC_scaffold_45_12006766 "0|1" "1|1" NA
## HiC_scaffold_45_24736172 "0/0" "0/0" "1/1"
## HiC_scaffold_45_24739830 "1|1" "0|1" "1|1"
## HiC_scaffold_46_9691567 NA "0/0" "0|1"
## HiC_scaffold_46_17380257 "0/1" "0/1" NA
## HiC_scaffold_46_18387147 "1|1" "1|1" "0/0"
## HiC_scaffold_46_37092355 "0|0" "0/0" NA
## HiC_scaffold_46_39183624 "1/1" "1/1" "0/0"
## HiC_scaffold_46_39390547 "0/0" NA "1|1"
## HiC_scaffold_46_42964941 "0/0" "0/0" "1|1"
## HiC_scaffold_46_42986653 "0/1" "0/0" "1/1"
## HiC_scaffold_46_52074364 NA "1|1" NA
## HiC_scaffold_46_54255667 "1/1" "0/0" "1/1"
## HiC_scaffold_47_3750532 NA NA "1/1"
## HiC_scaffold_47_3751345 "0/0" "0/0" "0/0"
## HiC_scaffold_47_15400639 "1|1" "1|1" NA
## HiC_scaffold_47_24072414 "0/0" "1/1" "0/0"
## HiC_scaffold_47_25273825 "0|1" "0/0" "0|1"
## HiC_scaffold_48_8752752 "0/0" NA NA
## HiC_scaffold_48_10765920 "1/1" "1|1" "0/0"
## HiC_scaffold_48_16077918 NA "0/0" "1|1"
## HiC_scaffold_48_16077940 "0/0" "1/1" "1|1"
## HiC_scaffold_48_16411609 "0/0" NA "1/1"
## HiC_scaffold_48_19972580 "0/0" "0/1" "1/1"
## HiC_scaffold_48_23493079 NA NA NA
## HiC_scaffold_48_23597210 "0/0" "0/1" NA
## HiC_scaffold_48_24478493 "0/0" "1/1" "0/0"
## HiC_scaffold_48_24881148 "0/1" "0/0" "0/0"
## HiC_scaffold_48_25865723 "0/1" "1/1" "1/1"
## HiC_scaffold_48_25984068 "1|1" "1|1" "0/0"
## HiC_scaffold_48_25989079 "0|1" NA "0/0"
## HiC_scaffold_48_30601375 "0|1" "0/0" NA
## HiC_scaffold_48_31662115 NA "1/1" "1/1"
## HiC_scaffold_48_41971562 NA "0/0" "0/0"
## HiC_scaffold_49_3392801 NA "0/0" "0/0"
## HiC_scaffold_49_6101692 "1/1" "1/1" "1/1"
## HiC_scaffold_49_7996315 "0/1" "1/1" "0/0"
## HiC_scaffold_49_9470474 "1/1" "1/1" NA
## HiC_scaffold_49_9886007 "0/0" "1/1" "0/0"
## HiC_scaffold_49_12592113 "0/0" "0/0" "1/1"
## HiC_scaffold_49_12741575 "0/1" "0/0" "0/0"
## HiC_scaffold_49_15135019 NA "1/1" NA
## HiC_scaffold_49_25906219 "1|1" "0/0" NA
## HiC_scaffold_49_26614199 "0/0" "0/1" "0/0"
## HiC_scaffold_49_26655554 "0/1" "0/0" "1/1"
## HiC_scaffold_49_37568341 "0/0" NA "1|1"
## HiC_scaffold_49_37568353 "0/0" NA "1|1"
## HiC_scaffold_49_40002255 NA "0/0" "1|1"
## HiC_scaffold_49_40003229 "1|1" "1|1" NA
## HiC_scaffold_49_42966376 "0/0" "0/0" "1/1"
## HiC_scaffold_5_801252 "1/1" "0/0" "0/0"
## HiC_scaffold_5_1446603 NA "0/0" "0/0"
## HiC_scaffold_5_1446611 NA "0/0" "0/0"
## HiC_scaffold_5_1530759 "0/0" NA "0|1"
## HiC_scaffold_5_1539275 "0/0" "0/0" "2|2"
## HiC_scaffold_5_1789576 "0/1" NA NA
## HiC_scaffold_5_1808197 "1/1" NA "0/0"
## HiC_scaffold_5_1808204 "0/0" "0/0" "1/1"
## HiC_scaffold_5_1943895 "0/0" NA "0/0"
## HiC_scaffold_5_1944469 "0/0" "0/0" "0/0"
## HiC_scaffold_5_2857283 "0/1" "0/0" "0/0"
## HiC_scaffold_5_4061378 NA "0/0" "0/1"
## HiC_scaffold_5_4340647 NA NA "0/0"
## HiC_scaffold_5_4435246 NA "1/1" "1/1"
## HiC_scaffold_5_8868783 "1/1" NA "1/1"
## HiC_scaffold_50_4315969 "1/1" "0/0" "0/1"
## HiC_scaffold_50_11652296 NA NA "1|1"
## HiC_scaffold_50_11657309 "1/1" "1/1" "0/0"
## HiC_scaffold_50_15521027 "0/0" NA NA
## HiC_scaffold_50_21050962 "0/0" "1/1" NA
## HiC_scaffold_50_23686202 "1|1" "1|1" "1/1"
## HiC_scaffold_50_27393462 "0/0" NA "0/0"
## HiC_scaffold_50_42586883 "0/0" NA "0/0"
## HiC_scaffold_50_45087211 "0/0" "0/0" "1/1"
## HiC_scaffold_50_49796550 "1/1" "1/1" NA
## HiC_scaffold_50_54383367 NA "0/0" "0/0"
## HiC_scaffold_50_63318678 "0/1" "1/1" "0/0"
## HiC_scaffold_51_3521000 "0/1" NA NA
## HiC_scaffold_51_4681905 "1/1" "1/1" NA
## HiC_scaffold_51_6305599 "0|2" "0/0" NA
## HiC_scaffold_51_8530818 NA NA "1|1"
## HiC_scaffold_51_11653312 "1/1" "0/0" NA
## HiC_scaffold_51_13138547 "0/1" NA NA
## HiC_scaffold_51_14457091 NA NA NA
## HiC_scaffold_51_15512668 "0/0" "0/1" "0/1"
## HiC_scaffold_51_17816346 "1/1" NA "1/1"
## HiC_scaffold_51_19997934 "1|1" "1|1" "1|1"
## HiC_scaffold_51_19997936 "1|1" "1|1" "1|1"
## HiC_scaffold_51_20870773 "0/0" "1/1" "0/0"
## HiC_scaffold_51_26660104 "0/0" "0/1" NA
## HiC_scaffold_51_40727521 "1|1" "0/0" NA
## HiC_scaffold_51_40892841 "0/1" "0/1" "0/1"
## HiC_scaffold_51_41717519 NA "0/0" "0/0"
## HiC_scaffold_51_42547638 "1/1" NA NA
## HiC_scaffold_52_3335804 NA "0/0" "0/0"
## HiC_scaffold_52_4149130 "0/0" "0/0" NA
## HiC_scaffold_52_6893679 "0/1" "1|1" "0|1"
## HiC_scaffold_52_13155416 "1/1" NA NA
## HiC_scaffold_52_13155437 "1|1" NA NA
## HiC_scaffold_52_13155442 "1|1" NA NA
## HiC_scaffold_52_14885688 "0/0" "1/1" "0/0"
## HiC_scaffold_52_14895078 "1/1" NA "0/1"
## HiC_scaffold_52_15141791 "0/1" "1/1" "1/1"
## HiC_scaffold_52_15743051 NA "1|1" "0/0"
## HiC_scaffold_52_15760201 "0/0" "0/0" "1/1"
## HiC_scaffold_52_15834589 "0/0" "0/0" "0/0"
## HiC_scaffold_52_15841769 "0/0" NA "0/1"
## HiC_scaffold_52_15862421 "1|1" "0/0" "1|1"
## HiC_scaffold_52_15970970 "2/2" "0/0" NA
## HiC_scaffold_52_16275237 NA "0/1" "0/0"
## HiC_scaffold_52_16275240 "0/0" "0/0" NA
## HiC_scaffold_52_16275290 NA "0/0" NA
## HiC_scaffold_52_16524164 "0/0" "0/0" "1|1"
## HiC_scaffold_52_16524572 "1/1" NA "1/1"
## HiC_scaffold_52_16525647 "1/1" "0/0" "1/1"
## HiC_scaffold_52_16637047 "0/0" "0/0" NA
## HiC_scaffold_52_17202127 NA "0/0" NA
## HiC_scaffold_52_17207724 "1/1" "1/1" "1/1"
## HiC_scaffold_52_17508820 NA "1|1" "1|1"
## HiC_scaffold_52_17547593 NA "1/1" NA
## HiC_scaffold_52_17551239 "0/0" "1/1" "1/1"
## HiC_scaffold_52_17560696 "0/0" NA "0/0"
## HiC_scaffold_52_17560699 "0/0" NA "0/0"
## HiC_scaffold_52_17741250 "0/0" "0/0" "0/1"
## HiC_scaffold_52_17742260 NA "0/0" "0/0"
## HiC_scaffold_52_18340578 "1/1" "1/1" "0/0"
## HiC_scaffold_52_18415911 NA "0/0" "1/1"
## HiC_scaffold_52_22189517 "0/0" "1/1" NA
## HiC_scaffold_52_22526592 "1|1" "1/1" "1/1"
## HiC_scaffold_52_26393471 "0/0" "1/1" "1/1"
## HiC_scaffold_52_26799380 NA "0/0" "0/0"
## HiC_scaffold_52_31871931 "0/0" "0/1" NA
## HiC_scaffold_52_31874283 NA "1|1" "1/1"
## HiC_scaffold_52_31874287 NA "1|1" "0/0"
## HiC_scaffold_52_32161053 "1|1" "0|1" "0|1"
## HiC_scaffold_52_33165557 "0/0" NA NA
## HiC_scaffold_52_33897620 "0/0" "0/1" "0/0"
## HiC_scaffold_52_34763156 "1|1" "0/1" "0/1"
## HiC_scaffold_52_34763171 "0/0" "0/0" "0/1"
## HiC_scaffold_52_35174755 "0/0" NA "1|1"
## HiC_scaffold_52_35608453 "0/1" "0/0" "1/1"
## HiC_scaffold_52_35608470 "0/1" "0/0" "1|1"
## HiC_scaffold_52_39464728 "1|1" "0/0" "1|1"
## HiC_scaffold_52_42141354 "0/1" NA "0/1"
## HiC_scaffold_52_44675725 NA NA NA
## HiC_scaffold_52_49935920 "1/1" "0/0" NA
## HiC_scaffold_53_21789524 NA "0/0" "0/0"
## HiC_scaffold_53_25168042 "0/0" "0/0" "1|1"
## HiC_scaffold_53_26398989 NA NA "1|1"
## HiC_scaffold_53_26398992 NA NA "1|1"
## HiC_scaffold_53_26398994 NA NA "1|1"
## HiC_scaffold_53_26549665 "0/0" "0/0" "0/0"
## HiC_scaffold_53_29227676 "0/0" "0|1" NA
## HiC_scaffold_53_31250349 "1/1" "1/1" "1/1"
## HiC_scaffold_54_530581 "1|1" "1|1" "1|1"
## HiC_scaffold_54_794095 "0/0" NA "1|1"
## HiC_scaffold_54_1171109 "0/0" NA "0/0"
## HiC_scaffold_54_1378956 "0/0" "1/1" "0/1"
## HiC_scaffold_54_1380539 "1/1" "0/0" NA
## HiC_scaffold_54_3045015 NA "1/1" "1/1"
## HiC_scaffold_54_3185987 "0/0" "1/1" "0/0"
## HiC_scaffold_54_4401098 "1|1" NA "0/0"
## HiC_scaffold_54_5595903 NA "0/0" "0/0"
## HiC_scaffold_54_5595921 NA "0/0" "0/0"
## HiC_scaffold_54_5595928 NA "0/0" "0/0"
## HiC_scaffold_54_5595949 NA "0/0" "0/0"
## HiC_scaffold_54_6649662 "0/0" NA NA
## HiC_scaffold_54_8036734 "0/1" "1|1" "0/0"
## HiC_scaffold_54_9206614 NA NA "0/0"
## HiC_scaffold_54_35913192 NA "0/0" "0/0"
## HiC_scaffold_54_35913282 "1|1" "0|1" "0/0"
## HiC_scaffold_54_35913283 "1|1" "0/1" "0/0"
## HiC_scaffold_55_1260491 "1/1" NA "1/1"
## HiC_scaffold_55_3254027 "1/1" "0/0" "1/1"
## HiC_scaffold_55_3281985 NA "0/0" "0/0"
## HiC_scaffold_55_5409544 "0/0" NA "1/1"
## HiC_scaffold_55_5411094 "1|1" NA "1|1"
## HiC_scaffold_55_5411115 "0/1" "1/1" "1/1"
## HiC_scaffold_55_18121799 "1/1" "1/1" "1/1"
## HiC_scaffold_55_19605809 "1/1" "0|1" "1/1"
## HiC_scaffold_55_19605817 NA "1|1" "0|1"
## HiC_scaffold_55_19605821 "1/1" "1|1" "0|1"
## HiC_scaffold_55_20195204 "0/0" "0/0" NA
## HiC_scaffold_55_20886967 NA "1/1" NA
## HiC_scaffold_55_23222937 "1|1" NA "0/0"
## HiC_scaffold_55_23626331 "0/0" "0/0" "0/0"
## HiC_scaffold_55_24539590 "1/1" NA "1/1"
## HiC_scaffold_55_24585939 NA "0/0" "1/1"
## HiC_scaffold_55_34174151 NA NA "0|1"
## HiC_scaffold_56_17874332 NA "1/1" NA
## HiC_scaffold_56_18635259 NA "1|1" "0/0"
## HiC_scaffold_56_23654344 "0/0" "0/1" "0/0"
## HiC_scaffold_56_35850533 "0/0" "1/1" "1/1"
## HiC_scaffold_56_35850539 "0/0" "0/0" "0/0"
## HiC_scaffold_56_40813556 "1/1" "0/1" "0/0"
## HiC_scaffold_56_53211633 "0/0" "1/1" NA
## HiC_scaffold_56_60070829 "1/1" "1/1" "1/1"
## HiC_scaffold_56_73286017 "0/1" "1|1" "0/0"
## HiC_scaffold_56_73829442 NA NA "0/0"
## HiC_scaffold_56_73829443 NA NA "0/0"
## HiC_scaffold_56_76060304 "1|1" "1|1" "0/0"
## HiC_scaffold_57_25306408 "0/1" NA "0/0"
## HiC_scaffold_57_29222385 "0|1" "0/0" "0|1"
## HiC_scaffold_57_29592432 NA NA "0/0"
## HiC_scaffold_57_31472698 "0|1" "1/1" "0/0"
## HiC_scaffold_57_32371742 "1/1" NA "1/1"
## HiC_scaffold_57_36495072 "0/1" "0/0" "0/0"
## HiC_scaffold_57_37286264 "1/1" "1/1" "0/0"
## HiC_scaffold_57_38537415 "1|1" "0/0" "0/0"
## HiC_scaffold_57_45438854 "0|1" NA NA
## HiC_scaffold_57_52856874 "0/1" "0/0" "0/0"
## HiC_scaffold_57_53575355 NA NA NA
## HiC_scaffold_57_55856783 "1/1" "0/0" "1/1"
## HiC_scaffold_58_1362614 NA NA "0/1"
## HiC_scaffold_58_1432845 "0/1" "1/1" "1|1"
## HiC_scaffold_58_1541720 "0/0" "0/0" NA
## HiC_scaffold_58_2777120 "1/1" NA "0/0"
## HiC_scaffold_58_2973169 "1/1" "1/1" "1/1"
## HiC_scaffold_58_3243043 "0/0" "0/1" "1/1"
## HiC_scaffold_58_4035282 "0/0" "0/0" NA
## HiC_scaffold_58_5442157 NA NA NA
## HiC_scaffold_58_8004631 "0/0" NA NA
## HiC_scaffold_58_8058998 "0/0" NA "0/0"
## HiC_scaffold_58_8932837 "1/1" "1/1" "1/1"
## HiC_scaffold_58_14814944 "1/1" "0/0" NA
## HiC_scaffold_58_15639988 "1/1" "0/1" "0/0"
## HiC_scaffold_58_15707198 "1/1" "0/0" "1/1"
## HiC_scaffold_58_15707258 "0/1" NA "1/1"
## HiC_scaffold_58_15710623 "0/0" "0/0" "1/1"
## HiC_scaffold_58_19155063 "1|1" NA NA
## HiC_scaffold_58_20224050 "0/0" "0/0" NA
## HiC_scaffold_58_38475355 "1/1" "1/1" NA
## HiC_scaffold_59_3979055 NA "0/0" "0/0"
## HiC_scaffold_59_5071810 NA "0/0" "0/1"
## HiC_scaffold_59_5349936 "0/1" "0/0" "0/0"
## HiC_scaffold_59_5350114 NA NA NA
## HiC_scaffold_59_7738302 NA "0/0" "1/1"
## HiC_scaffold_59_7738351 NA "0/0" "1/1"
## HiC_scaffold_59_7958561 NA "0/0" "1|1"
## HiC_scaffold_59_9273798 "0/0" "0/0" "0/0"
## HiC_scaffold_59_50928099 "0/0" NA "0/0"
## HiC_scaffold_59_52960060 NA "0/0" NA
## HiC_scaffold_6_10569023 "0/1" "0/0" "0/0"
## HiC_scaffold_6_10711445 NA NA "0/0"
## HiC_scaffold_6_13209200 "0/0" "0/0" "0/0"
## HiC_scaffold_6_13213107 "0/0" "0/0" "0/0"
## HiC_scaffold_6_13311684 "1|1" "1|1" "0/0"
## HiC_scaffold_6_15670783 "0/0" "1|1" "1|1"
## HiC_scaffold_6_19111232 NA "0/0" "0/0"
## HiC_scaffold_6_32805498 "1/1" "1/1" "0/0"
## HiC_scaffold_6_38793174 "1|1" NA NA
## HiC_scaffold_6_41092101 "1|1" "0/1" "1|1"
## HiC_scaffold_6_41342933 "1/1" "1/1" "0/0"
## HiC_scaffold_6_47594508 NA NA NA
## HiC_scaffold_60_70878 NA "1|1" "1|1"
## HiC_scaffold_60_99549 "0/0" NA "1|1"
## HiC_scaffold_60_201823 "0/0" "0/0" "1/1"
## HiC_scaffold_60_712969 "0/0" "1|1" NA
## HiC_scaffold_60_744783 "1/1" "0/0" "0|0"
## HiC_scaffold_60_744788 "0/0" NA "0/0"
## HiC_scaffold_60_22142128 "0/0" "0|1" "1|1"
## HiC_scaffold_60_27599770 "1/1" "1/1" "1/1"
## HiC_scaffold_60_30608878 "0/0" "1/1" "1|1"
## HiC_scaffold_60_32657324 "0/0" "0/0" "1/1"
## HiC_scaffold_60_32672580 "1/1" "1/1" NA
## HiC_scaffold_60_38856893 "0/1" NA "0/0"
## HiC_scaffold_60_39028335 NA "1/1" "1/1"
## HiC_scaffold_60_40296869 "0/0" "1/1" NA
## HiC_scaffold_60_42775723 "1|1" NA "1/1"
## HiC_scaffold_60_44687906 "0/0" NA "0/0"
## HiC_scaffold_60_44804601 "0/0" "0/0" NA
## HiC_scaffold_60_53696867 NA "0/0" "0/0"
## HiC_scaffold_60_53696868 NA "0/0" "0/0"
## HiC_scaffold_60_60651515 "1/1" "1|1" "0|1"
## HiC_scaffold_60_70678462 NA "1/1" "1/1"
## HiC_scaffold_61_2205328 "0/1" "0/0" NA
## HiC_scaffold_61_2491706 "1|1" "1/1" "1|1"
## HiC_scaffold_61_4009916 "0/0" "0/0" "0/0"
## HiC_scaffold_61_4062917 "0/1" "0/0" "0/0"
## HiC_scaffold_61_4122763 NA "1|1" NA
## HiC_scaffold_61_4216461 "1/1" NA "1/1"
## HiC_scaffold_61_4325053 "0/0" NA "0/0"
## HiC_scaffold_61_9004838 NA "1|1" "1|1"
## HiC_scaffold_61_14635083 NA NA "0/0"
## HiC_scaffold_62_1128608 NA "1/1" "1/1"
## HiC_scaffold_62_11335200 "1|1" "0/0" "0/0"
## HiC_scaffold_62_18828476 "0/0" "1/1" NA
## HiC_scaffold_62_21548870 "1|1" "1|1" "1|1"
## HiC_scaffold_62_23103274 "0/0" NA "1/1"
## HiC_scaffold_62_25793456 "0/0" "0/0" NA
## HiC_scaffold_62_25887474 "0/0" NA "0/0"
## HiC_scaffold_62_28516096 "1|1" "1|1" NA
## HiC_scaffold_62_28516099 "1|1" "1|1" NA
## HiC_scaffold_62_28818725 "0/0" "0/0" NA
## HiC_scaffold_62_28818729 "1/1" "1/1" NA
## HiC_scaffold_62_45207353 NA "0/0" NA
## HiC_scaffold_63_3092269 "0/0" NA "1/1"
## HiC_scaffold_63_3977940 "0/0" "0/0" "0/1"
## HiC_scaffold_63_4084937 "0/0" "1/1" "0/0"
## HiC_scaffold_63_4196326 "1/1" "1/1" NA
## HiC_scaffold_63_6262453 "0/1" "1/1" "1/1"
## HiC_scaffold_63_6350204 "1/1" "0/0" NA
## HiC_scaffold_63_6458794 "0/0" NA "1|1"
## HiC_scaffold_64_9162978 NA NA "2/2"
## HiC_scaffold_64_16876561 "0/0" NA NA
## HiC_scaffold_64_17543009 "0/0" NA "0/0"
## HiC_scaffold_64_18925356 NA "0/0" "0/0"
## HiC_scaffold_64_19133050 "0/0" NA "0/0"
## HiC_scaffold_64_19627769 "1|1" NA "0/1"
## HiC_scaffold_64_20477250 NA NA "0/0"
## HiC_scaffold_64_22816677 "0/0" "0/0" NA
## HiC_scaffold_64_22954654 "0|1" "1|1" "1|1"
## HiC_scaffold_64_22954658 "0|1" "1|1" "1|1"
## HiC_scaffold_64_22954682 "0/1" "1/1" "1/1"
## HiC_scaffold_65_6829971 NA NA "0/0"
## HiC_scaffold_65_8071102 NA NA "0/0"
## HiC_scaffold_65_9023979 "0/1" "1/1" "0/0"
## HiC_scaffold_65_9839671 NA NA NA
## HiC_scaffold_65_10404778 "0/0" "1/1" "0/0"
## HiC_scaffold_65_11327791 NA "1/1" "0/0"
## HiC_scaffold_65_11332104 "0/0" NA NA
## HiC_scaffold_65_34823822 NA "1/1" "0/0"
## HiC_scaffold_65_51418017 "1/1" NA "1/1"
## HiC_scaffold_65_54053979 NA "1|1" "1|1"
## HiC_scaffold_65_57110875 "1|1" "1|1" NA
## HiC_scaffold_66_15615363 "0/0" "0/0" "0|1"
## HiC_scaffold_66_15672090 NA "0/0" "1/1"
## HiC_scaffold_66_17903445 "1|1" "0/0" "0/0"
## HiC_scaffold_66_18298629 NA "0/0" "0/0"
## HiC_scaffold_66_19730676 "1|1" "0/0" NA
## HiC_scaffold_66_23688768 "0/1" "1/1" "0/1"
## HiC_scaffold_66_26614535 "0/0" "0/0" "0/0"
## HiC_scaffold_66_27445665 "0/1" "0/0" NA
## HiC_scaffold_66_29457165 "0/1" "0/1" "0|1"
## HiC_scaffold_66_29457180 "0/1" "0/1" "1/1"
## HiC_scaffold_66_30116287 "1|1" "1|1" "1/1"
## HiC_scaffold_66_31603503 "0/0" NA "1|1"
## HiC_scaffold_66_33261460 "0/0" "0/0" "0/1"
## HiC_scaffold_66_34138981 "1/1" "1/1" "0/0"
## HiC_scaffold_66_34139020 "0/0" "0/0" NA
## HiC_scaffold_66_34142862 "0/0" NA "1/1"
## HiC_scaffold_67_1404390 "0/0" "1/1" "0/0"
## HiC_scaffold_67_28493665 "0/0" "0/0" "0/0"
## HiC_scaffold_67_30243885 "0/0" "0/0" "0/0"
## HiC_scaffold_67_31511806 NA "0/0" "0|1"
## HiC_scaffold_67_34638092 "0/0" "1/1" NA
## HiC_scaffold_67_37534720 "0/1" NA NA
## HiC_scaffold_67_39679546 "0/0" "1/1" NA
## HiC_scaffold_67_39854918 NA "1|1" "0/0"
## HiC_scaffold_67_39860738 NA "1/1" "0/1"
## HiC_scaffold_67_40331656 "0/0" NA "0/0"
## HiC_scaffold_67_40824747 "1|1" "1|1" "1|1"
## HiC_scaffold_68_3438132 "1|1" "1|1" "1|1"
## HiC_scaffold_68_3438133 "1|1" "1|1" "1|1"
## HiC_scaffold_68_11206902 "0/0" "0/1" "1/1"
## HiC_scaffold_68_32770607 NA "1|1" NA
## HiC_scaffold_68_34016823 "0/0" "0/0" "0/0"
## HiC_scaffold_68_34020019 "0/1" "0/1" "0/1"
## HiC_scaffold_68_40296057 NA "0/0" "0/0"
## HiC_scaffold_68_40296059 NA "0/0" "0/0"
## HiC_scaffold_68_65001879 "1/1" "1/1" "1/1"
## HiC_scaffold_69_23311147 NA NA "0/0"
## HiC_scaffold_69_27351303 "0/0" "0/0" "0/0"
## HiC_scaffold_69_29437208 NA "0/0" NA
## HiC_scaffold_69_33699381 NA "0/0" "1|1"
## HiC_scaffold_69_40194698 "0/1" NA "1/1"
## HiC_scaffold_69_48273575 "0/1" "0/0" "1/1"
## HiC_scaffold_69_48348026 NA NA "0/1"
## HiC_scaffold_69_48348034 NA NA "0/1"
## HiC_scaffold_69_49563252 "0/0" "1/1" "1/1"
## HiC_scaffold_69_49593952 "1/1" "1/1" "1/1"
## HiC_scaffold_69_49859037 "0|1" NA "0/0"
## HiC_scaffold_69_51271238 "1|1" NA "0/0"
## HiC_scaffold_69_51529836 NA NA "0/0"
## HiC_scaffold_69_57313650 NA NA NA
## HiC_scaffold_69_57359194 NA "1/1" "1/1"
## HiC_scaffold_6951_523650 "0/0" NA "0/0"
## HiC_scaffold_6951_897126 "0/0" NA NA
## HiC_scaffold_6951_1134482 NA NA "1|1"
## HiC_scaffold_6951_2484960 "0/0" NA "0/1"
## HiC_scaffold_6951_3301273 "1/1" NA NA
## HiC_scaffold_6951_3314609 "0/0" "0/0" "0/1"
## HiC_scaffold_6951_3945993 "0/0" "0/0" NA
## HiC_scaffold_6958_218293 "0/0" "0/0" "0/0"
## HiC_scaffold_6958_449143 "1/1" "0/0" "0/0"
## HiC_scaffold_7_351023 "1/1" NA "0/1"
## HiC_scaffold_7_488024 NA "0/0" "0|1"
## HiC_scaffold_7_492663 "1/1" NA NA
## HiC_scaffold_7_693567 "0/0" NA NA
## HiC_scaffold_7_2379128 "0/1" "0/0" "0/0"
## HiC_scaffold_7_3087721 "0/1" "0/1" "1/1"
## HiC_scaffold_7_3394880 "0/0" "1/1" "0/1"
## HiC_scaffold_7_22247106 "0/0" NA "0/0"
## HiC_scaffold_70_4632611 NA NA "0/0"
## HiC_scaffold_70_14042778 "0/1" "1|1" "0/0"
## HiC_scaffold_71_410844 "1/1" "1|1" NA
## HiC_scaffold_71_1753451 "0/0" "0/0" "0/0"
## HiC_scaffold_71_2283682 "0|1" NA "0/0"
## HiC_scaffold_71_3439685 "0/0" "2|2" NA
## HiC_scaffold_71_17850462 "0/1" "0/1" "0/0"
## HiC_scaffold_71_20588314 "0/0" NA "1|1"
## HiC_scaffold_71_25465351 "0/0" "0|1" "0/0"
## HiC_scaffold_71_25465352 "0/0" "0|1" "0/0"
## HiC_scaffold_71_26356062 NA "0/1" NA
## HiC_scaffold_72_11785096 "1/1" "1/1" "1/1"
## HiC_scaffold_72_17285854 "0/1" "1/1" NA
## HiC_scaffold_72_23704999 NA "1/1" "0/1"
## HiC_scaffold_72_24465318 NA NA NA
## HiC_scaffold_72_30457277 "0/1" NA "1/1"
## HiC_scaffold_72_32068649 "0/0" "0/0" "0/0"
## HiC_scaffold_72_35058295 NA "1/1" NA
## HiC_scaffold_72_36024997 NA NA "1|1"
## HiC_scaffold_72_37135067 "1|1" "0/0" "0/0"
## HiC_scaffold_72_38410141 "0/0" "1/1" "1/1"
## HiC_scaffold_72_38448056 NA NA NA
## HiC_scaffold_72_41412511 "0/0" NA "1/1"
## HiC_scaffold_73_2192629 "0/1" "0/0" "1|1"
## HiC_scaffold_73_2920208 "0/0" "0|1" "0/0"
## HiC_scaffold_73_4522493 NA "1/1" "1/1"
## HiC_scaffold_73_4748625 "0/0" NA "0/0"
## HiC_scaffold_73_5839336 NA NA NA
## HiC_scaffold_73_9338582 "0/1" "0/0" "0/0"
## HiC_scaffold_73_27393859 "1|1" "0/0" "0/1"
## HiC_scaffold_74_14235619 "1/1" "0/0" "0/0"
## HiC_scaffold_74_14515598 "1/1" NA NA
## HiC_scaffold_74_15116121 "0/0" "0/0" "0/0"
## HiC_scaffold_74_17233613 "1/1" "1/1" NA
## HiC_scaffold_74_17725340 NA "1|1" "1|1"
## HiC_scaffold_74_18418135 "1/1" "1|1" "0/0"
## HiC_scaffold_74_18418138 "1|1" "1|1" "0/0"
## HiC_scaffold_74_21254425 "1/1" "1/1" "0/1"
## HiC_scaffold_74_22261065 NA "0/0" "1/1"
## HiC_scaffold_74_47132519 NA NA "0/0"
## HiC_scaffold_74_50979096 NA "1/1" "0/0"
## HiC_scaffold_74_51060549 "1/1" "1/1" "0/0"
## HiC_scaffold_74_53256803 "0/0" "0/1" "0/0"
## HiC_scaffold_74_55464169 NA "1/1" NA
## HiC_scaffold_74_55515512 NA "1/1" "0/0"
## HiC_scaffold_74_55999260 "1|1" "0/0" "1|1"
## HiC_scaffold_74_57404902 "0/0" NA "1|1"
## HiC_scaffold_74_58181927 NA NA "0/0"
## HiC_scaffold_74_58198600 "1/1" NA NA
## HiC_scaffold_74_63060195 "1/1" "0/1" "1/1"
## HiC_scaffold_75_5345466 "0/0" "0/0" "0/1"
## HiC_scaffold_75_5346522 "1/1" "0/0" "0/0"
## HiC_scaffold_75_5346535 "1/1" "0/0" "0/0"
## HiC_scaffold_75_9850973 "0/0" "1|1" "1/1"
## HiC_scaffold_76_27149820 "1/1" "1/1" "0/0"
## HiC_scaffold_76_31582908 "1/1" NA "0/0"
## HiC_scaffold_76_31792815 "0/0" "0/1" "1/1"
## HiC_scaffold_76_35352820 "0/0" NA "0/0"
## HiC_scaffold_76_57782171 "0/1" "1/1" NA
## HiC_scaffold_76_59862401 "1/1" "0/0" "0/1"
## HiC_scaffold_76_61095594 NA NA NA
## HiC_scaffold_76_65496128 NA NA "1/1"
## HiC_scaffold_76_68965847 NA "1/1" "0/1"
## HiC_scaffold_76_68966411 "1/1" "1/1" NA
## HiC_scaffold_76_69823482 "1|1" NA "1|1"
## HiC_scaffold_76_73343841 "1/1" "1/1" "0/0"
## HiC_scaffold_77_3598274 "0/0" NA NA
## HiC_scaffold_77_6982137 NA "1/1" "1/1"
## HiC_scaffold_77_11021994 NA "1/1" "1/1"
## HiC_scaffold_77_13608165 "0/0" NA NA
## HiC_scaffold_77_16888594 "0/0" "0/0" NA
## HiC_scaffold_77_16888623 "0/0" "0/1" "0/0"
## HiC_scaffold_77_16889448 "0/1" "0/1" "0/1"
## HiC_scaffold_77_39784685 "1|1" NA NA
## HiC_scaffold_77_44375866 "0/0" "0/1" "0/0"
## HiC_scaffold_77_45385370 NA "0/0" NA
## HiC_scaffold_78_5719919 NA "0/0" "0/0"
## HiC_scaffold_78_11353297 "0/0" NA NA
## HiC_scaffold_78_27316392 "0/1" "0/0" "1/1"
## HiC_scaffold_78_48124809 "0/2" "0/0" "0/0"
## HiC_scaffold_78_48124826 "0/1" "0/0" "0/0"
## HiC_scaffold_78_48126176 "1/1" "0/0" NA
## HiC_scaffold_78_48279096 NA "0/0" NA
## HiC_scaffold_78_48434558 "1|1" NA "1|1"
## HiC_scaffold_78_49759181 "1|1" "0|1" "0/0"
## HiC_scaffold_78_49759192 "0/0" "0/0" "0/0"
## HiC_scaffold_78_49759215 "0/1" "0/0" "0/0"
## HiC_scaffold_78_51364025 "1/1" NA NA
## HiC_scaffold_78_55395445 "0/1" "0/0" "1/1"
## HiC_scaffold_78_59610866 "0/0" "1/1" "1/1"
## HiC_scaffold_78_62136661 NA NA "1/1"
## HiC_scaffold_79_1643780 NA "1/1" "0/0"
## HiC_scaffold_79_2519178 NA "1/1" "1/1"
## HiC_scaffold_79_2858100 "0/0" "1/1" "1/1"
## HiC_scaffold_79_3922454 NA "1/1" "0/0"
## HiC_scaffold_79_4127878 "0/0" "0/0" "1|1"
## HiC_scaffold_79_4543693 "0/0" "0/0" "1/1"
## HiC_scaffold_79_11507678 "0/0" "1/1" "0/0"
## HiC_scaffold_79_12618812 "0/0" NA "0/0"
## HiC_scaffold_79_14185404 "1|1" "0|1" "1|1"
## HiC_scaffold_79_17120237 "0/0" "1/1" NA
## HiC_scaffold_79_17120254 "0/0" "1/1" NA
## HiC_scaffold_79_35551507 "0/1" "0/0" "0/0"
## HiC_scaffold_79_35551543 "0/1" "0/0" "0/0"
## HiC_scaffold_79_38927423 NA "1|1" "0/0"
## HiC_scaffold_79_42623307 "1|1" "0/0" NA
## HiC_scaffold_79_43179786 NA NA NA
## HiC_scaffold_79_43180099 "0/0" NA "0/0"
## HiC_scaffold_79_43828078 "0/0" NA "0/0"
## HiC_scaffold_79_43872513 "0/0" "0/0" NA
## HiC_scaffold_79_44627215 "0/1" "1/1" NA
## HiC_scaffold_79_50772769 "1|1" "1|1" NA
## HiC_scaffold_79_55468575 "1/1" "0/1" "0/0"
## HiC_scaffold_79_55816114 "0/0" "1/1" NA
## HiC_scaffold_79_59915784 "0/0" "0/0" "0/0"
## HiC_scaffold_79_60165298 "0/0" "1|1" NA
## HiC_scaffold_79_60165305 "0/0" "0/0" "0/0"
## HiC_scaffold_79_69145556 "0/1" NA NA
## HiC_scaffold_79_70208305 "1|1" NA "0/0"
## HiC_scaffold_79_73412292 "1/1" "0/0" "1/1"
## HiC_scaffold_79_73416663 "1|1" "1|1" NA
## HiC_scaffold_79_73416688 "1|1" "0|1" NA
## HiC_scaffold_79_76863102 "1/1" "0/0" "0/1"
## HiC_scaffold_79_81279649 NA "0/0" "0/0"
## HiC_scaffold_79_81499990 "1/1" "1/1" "1/1"
## HiC_scaffold_79_82319836 "0/0" "1|1" "1|1"
## HiC_scaffold_79_82319849 "0/0" "1|1" "1|1"
## HiC_scaffold_79_83163707 NA "0/0" "0/0"
## HiC_scaffold_79_86283512 "0/0" "1/1" NA
## HiC_scaffold_79_87123758 "1|1" "1|1" NA
## HiC_scaffold_79_88362889 NA NA "0/0"
## HiC_scaffold_79_88599431 "1/1" "1/1" "0/0"
## HiC_scaffold_79_89322919 NA "1/1" "0/0"
## HiC_scaffold_79_89331918 NA "1|1" "0/0"
## HiC_scaffold_79_91340958 "1|1" "0/0" "1/1"
## HiC_scaffold_8_13649836 "1|1" "1/1" "0|1"
## HiC_scaffold_8_13650752 NA "1|1" "1|1"
## HiC_scaffold_8_23818233 NA "1/1" "1/1"
## HiC_scaffold_8_24123972 "0/0" "0/1" "0/0"
## HiC_scaffold_8_24230791 "0/0" "1|1" NA
## HiC_scaffold_8_24588423 NA NA "0/0"
## HiC_scaffold_8_25348483 "0/0" NA "1/1"
## HiC_scaffold_8_25421933 NA NA "0/0"
## HiC_scaffold_8_25772942 NA NA "0/0"
## HiC_scaffold_8_26289589 "0/0" "0/0" "0/0"
## HiC_scaffold_8_27602740 "0/0" "0|0" "0/0"
## HiC_scaffold_8_28159063 NA "0/0" "1|1"
## HiC_scaffold_8_30829320 NA NA "0/1"
## HiC_scaffold_8_31044084 "0/0" "1|1" "0/0"
## HiC_scaffold_8_31415507 "0/0" NA "1|1"
## HiC_scaffold_8_32594682 "0/1" NA "0/1"
## HiC_scaffold_80_3617847 NA NA "1|1"
## HiC_scaffold_80_5758183 "0/0" "1|1" NA
## HiC_scaffold_80_6760006 "0/0" "0/0" "0|1"
## HiC_scaffold_80_6760037 "0/0" NA "0/0"
## HiC_scaffold_80_7772622 "1/1" "0/0" "1/1"
## HiC_scaffold_80_7919533 "0/0" "1/1" NA
## HiC_scaffold_80_8110052 NA "0/0" "1|1"
## HiC_scaffold_80_8193366 "1/1" "1/1" "1/1"
## HiC_scaffold_80_8625784 "1/1" "1/1" "1/1"
## HiC_scaffold_80_8912846 "0/1" "0/0" NA
## HiC_scaffold_80_9544102 "0/1" NA "0/0"
## HiC_scaffold_80_10770701 NA NA "0/1"
## HiC_scaffold_80_11590146 "1/1" NA "0/0"
## HiC_scaffold_80_16953653 "1/1" "0/0" "0/0"
## HiC_scaffold_80_18938832 "1|1" "0/0" "0/0"
## HiC_scaffold_80_19015946 "1/1" "1/1" "1/1"
## HiC_scaffold_80_19404001 NA "0/0" "1/1"
## HiC_scaffold_80_25346708 "0/0" NA "0/0"
## HiC_scaffold_80_37479851 NA NA "1/1"
## HiC_scaffold_80_37507516 "0/0" "1/1" "0/0"
## HiC_scaffold_81_1187192 "0/0" NA NA
## HiC_scaffold_81_2689826 "0|1" "0/0" "1|1"
## HiC_scaffold_81_2690751 NA "0/0" "1|1"
## HiC_scaffold_81_6614123 "0/0" "1/1" NA
## HiC_scaffold_81_7836855 NA "0/0" NA
## HiC_scaffold_81_10334868 "0/0" "0/0" "0/0"
## HiC_scaffold_81_10458752 "0/1" NA "0/0"
## HiC_scaffold_81_17515538 "1/1" NA "1/1"
## HiC_scaffold_81_40271282 "1/1" NA "0/0"
## HiC_scaffold_81_40271294 "0/0" "0/0" "1/1"
## HiC_scaffold_81_41096427 NA NA "0/0"
## HiC_scaffold_81_41096444 NA NA "0/0"
## HiC_scaffold_81_43820595 NA "0/0" "1/1"
## HiC_scaffold_81_43820732 NA NA "1|1"
## HiC_scaffold_81_43854278 "1/1" NA "0/1"
## HiC_scaffold_81_44804862 "0/0" "1/1" "0/0"
## HiC_scaffold_81_45063428 "0/1" NA "0/0"
## HiC_scaffold_81_45950590 NA "0/0" "0/0"
## HiC_scaffold_81_46714752 "0/0" "0/0" NA
## HiC_scaffold_81_46714759 "0/0" "0/0" NA
## HiC_scaffold_81_47170397 NA "0/0" "1|1"
## HiC_scaffold_81_47628201 NA "0/0" "0/0"
## HiC_scaffold_81_48105216 "1|1" "0/1" NA
## HiC_scaffold_81_48932070 "1/1" "0/0" "0/0"
## HiC_scaffold_81_54050146 "1/1" "0/0" "1/1"
## HiC_scaffold_82_5672063 "0/1" NA NA
## HiC_scaffold_82_8796823 NA "1|1" "0/0"
## HiC_scaffold_82_13450959 "1/1" "0/0" NA
## HiC_scaffold_82_26144442 NA "0|1" "0/1"
## HiC_scaffold_82_26147011 "1|1" "0/1" "0/0"
## HiC_scaffold_82_28907834 "1/1" "0/0" NA
## HiC_scaffold_82_34413793 "0/0" NA "1|1"
## HiC_scaffold_82_34413800 "0/0" "0/0" "1|1"
## HiC_scaffold_82_36173035 "0/1" "1|1" "1/1"
## HiC_scaffold_82_40539273 "0/0" "1/1" "0/0"
## HiC_scaffold_82_41470256 "0/1" "1/1" "1/1"
## HiC_scaffold_83_23993605 "0/0" NA "0/0"
## HiC_scaffold_83_35035961 "0/0" NA "0/0"
## HiC_scaffold_83_43423618 NA NA "1|1"
## HiC_scaffold_83_46920654 NA NA "0/1"
## HiC_scaffold_83_46934197 "1/1" "1|1" "0/0"
## HiC_scaffold_84_356301 NA "1|1" "0/1"
## HiC_scaffold_84_5761817 "0/0" "0/0" "1/1"
## HiC_scaffold_84_5769022 "0/0" "1|1" "0/0"
## HiC_scaffold_84_6288130 "0/0" "0/0" "0/0"
## HiC_scaffold_84_6288141 "0|0" "1/1" "1|1"
## HiC_scaffold_84_6288147 "0|0" "0/0" "0/0"
## HiC_scaffold_84_7069238 "0/0" NA NA
## HiC_scaffold_84_9131309 NA "0/0" NA
## HiC_scaffold_84_10148442 NA "0/0" NA
## HiC_scaffold_84_14659391 "1/1" NA NA
## HiC_scaffold_84_16302752 NA "1/1" "0/1"
## HiC_scaffold_84_18463244 NA "1/1" "0/0"
## HiC_scaffold_84_22909575 "1|1" "1|1" "0/0"
## HiC_scaffold_84_29275266 "0/0" "1/1" NA
## HiC_scaffold_84_31184610 "1/1" "1/1" "1/1"
## HiC_scaffold_84_33093169 "0|1" "1|1" "0/0"
## HiC_scaffold_84_37675180 "0/0" "1/1" "0/0"
## HiC_scaffold_84_39501814 "0/0" NA "0/1"
## HiC_scaffold_84_50169438 NA "0/0" "1|1"
## HiC_scaffold_84_50169445 NA "0/0" "1|1"
## HiC_scaffold_84_51231025 "0/0" NA "0/0"
## HiC_scaffold_85_9792207 "0/0" "0/0" "1|1"
## HiC_scaffold_85_11784233 "0/0" "0/0" "1|1"
## HiC_scaffold_85_11911022 "1|1" NA NA
## HiC_scaffold_85_11911142 "0/0" NA NA
## HiC_scaffold_85_11913828 "0/1" "0|1" "0/0"
## HiC_scaffold_85_11913831 "0/1" "0/0" "1/1"
## HiC_scaffold_85_12353081 "0/0" NA NA
## HiC_scaffold_85_12414551 NA "0/0" "2/2"
## HiC_scaffold_85_13043967 NA NA "0/0"
## HiC_scaffold_85_13221888 "0/0" "0/0" "0/0"
## HiC_scaffold_85_27008863 NA NA "0/0"
## HiC_scaffold_85_28992264 "0|1" "0/0" "0/0"
## HiC_scaffold_85_28992268 "0|1" NA "1/1"
## HiC_scaffold_85_64310850 NA NA "1|1"
## HiC_scaffold_85_65135112 "0/0" "0/0" "0/0"
## HiC_scaffold_85_65563529 "0/1" "1/1" NA
## HiC_scaffold_86_1949664 "0/1" "1|1" NA
## HiC_scaffold_86_5340423 "0/0" "1|1" "1/1"
## HiC_scaffold_86_5483991 "1|1" NA "0/0"
## HiC_scaffold_86_8928469 "0/0" "0/0" "0/0"
## HiC_scaffold_86_23727924 "0/0" NA NA
## HiC_scaffold_86_24825818 "1|1" "1|1" NA
## HiC_scaffold_86_25333718 "1/1" "1/1" "0/1"
## HiC_scaffold_86_29668168 "0/0" "0|1" NA
## HiC_scaffold_86_30914243 "1|1" NA "1|1"
## HiC_scaffold_86_32040320 "0|1" NA NA
## HiC_scaffold_86_32040329 "0|1" NA NA
## HiC_scaffold_86_32125061 "0/0" "0/0" "1/1"
## HiC_scaffold_86_32144758 "0/1" "0/0" "0/0"
## HiC_scaffold_86_32153692 "0/0" NA "1/1"
## HiC_scaffold_86_32534129 NA "0/1" NA
## HiC_scaffold_86_32605768 "0/0" "1|1" "0/0"
## HiC_scaffold_86_36355399 "0/0" "0/0" "0/0"
## HiC_scaffold_86_36357265 "1/1" "1/1" NA
## HiC_scaffold_87_1253643 NA NA "0/0"
## HiC_scaffold_87_2137958 "0/0" NA "0/1"
## HiC_scaffold_87_3980100 "0/0" "1/1" "1/1"
## HiC_scaffold_87_4395923 "0/0" NA "1/1"
## HiC_scaffold_87_5489328 "0/1" NA NA
## HiC_scaffold_87_6300441 "0/1" "1|1" NA
## HiC_scaffold_87_16306904 NA "0/0" "1/1"
## HiC_scaffold_87_44780945 NA NA "1|1"
## HiC_scaffold_88_5584327 "1/1" "1|1" NA
## HiC_scaffold_88_7104630 "0/0" "0|1" "1|1"
## HiC_scaffold_88_7104631 "0|1" "0|1" "1|1"
## HiC_scaffold_88_7104638 "0/1" "0|1" "1|1"
## HiC_scaffold_88_7104639 "0|1" "1|1" "0/1"
## HiC_scaffold_88_7104640 "0|1" "0/0" "1|1"
## HiC_scaffold_88_7479340 "0/0" NA NA
## HiC_scaffold_88_8773607 "1|1" "1|1" NA
## HiC_scaffold_88_9883678 "1|1" NA NA
## HiC_scaffold_88_10878718 "1/1" "1/1" "1/1"
## HiC_scaffold_88_19365116 "1/1" "1/1" "1/1"
## HiC_scaffold_88_20477349 "1/1" NA NA
## HiC_scaffold_88_20557885 "1/1" NA NA
## HiC_scaffold_89_675045 "0/0" "0/0" "1/1"
## HiC_scaffold_89_2815845 "0/1" NA "0/0"
## HiC_scaffold_89_2843940 "0/0" NA "1/1"
## HiC_scaffold_89_3018830 "0/1" NA "1/1"
## HiC_scaffold_89_13745506 NA "0/0" "0/0"
## HiC_scaffold_89_30006907 "0/0" NA NA
## HiC_scaffold_89_36509388 "1|1" "0/0" NA
## HiC_scaffold_89_38703735 NA "0/1" "0/1"
## HiC_scaffold_89_38764895 NA "1/1" "0/0"
## HiC_scaffold_89_42052609 "0/0" NA "0/0"
## HiC_scaffold_89_42054991 "0/0" "0/1" NA
## HiC_scaffold_89_44306958 "1/1" "1|1" "0/0"
## HiC_scaffold_89_44338206 "0/1" "0/1" "1/1"
## HiC_scaffold_89_45298973 "1/1" "1/1" NA
## HiC_scaffold_9_3529921 "1/1" "1/1" "1/1"
## HiC_scaffold_9_5660454 "0/0" "1|1" NA
## HiC_scaffold_9_5660461 "1/1" "0/0" NA
## HiC_scaffold_9_5854070 NA "1/1" NA
## HiC_scaffold_9_6142415 "0/0" NA "0/0"
## HiC_scaffold_9_6142436 "0/0" NA "0/0"
## HiC_scaffold_9_6143781 "0/0" "0/0" NA
## HiC_scaffold_9_6654825 "0/0" "0/1" "0/0"
## HiC_scaffold_9_7094545 NA "1|1" NA
## HiC_scaffold_9_7100208 NA "0/0" "1|1"
## HiC_scaffold_9_7109988 NA NA NA
## HiC_scaffold_9_7111922 "0/0" "0/0" "1|1"
## HiC_scaffold_9_8235781 NA NA NA
## HiC_scaffold_9_8279558 "1/1" NA "1/1"
## HiC_scaffold_9_15679481 "1|1" "0/0" "1|1"
## HiC_scaffold_9_18082611 "0/0" NA "0/0"
## HiC_scaffold_9_18090830 NA "0/0" "1/1"
## HiC_scaffold_9_30240531 "1/1" "1/1" "1/1"
## HiC_scaffold_90_10418696 NA "1/1" "1/1"
## HiC_scaffold_90_11470224 NA "1/1" "0/0"
## HiC_scaffold_90_13593319 "1/1" "0/0" "0/0"
## HiC_scaffold_90_16260161 "1|1" "1|1" "0/0"
## HiC_scaffold_90_22325499 "0/1" "1/1" NA
## HiC_scaffold_90_23574204 NA "0/0" "1|1"
## HiC_scaffold_90_23609908 "0/0" "0/0" "0|1"
## HiC_scaffold_90_23623078 NA "1|1" NA
## HiC_scaffold_90_23626883 "0/0" "0/1" "1/1"
## HiC_scaffold_90_23812663 "1/1" "1/1" NA
## HiC_scaffold_90_25939283 "0/0" "0/0" "0/0"
## HiC_scaffold_90_25985714 NA "1/1" "0/0"
## HiC_scaffold_90_30751272 "1/1" "0/0" "1/1"
## HiC_scaffold_90_31232025 "1|1" NA "1|1"
## HiC_scaffold_90_31245699 "1/1" NA "0/1"
## HiC_scaffold_90_31527975 NA "0/0" "1/1"
## HiC_scaffold_90_31546172 "0/0" NA "0/0"
## HiC_scaffold_90_38511996 "0/0" "0|1" "0/0"
## HiC_scaffold_90_38511999 "0/0" "0|1" "0/0"
## HiC_scaffold_90_38517279 "0/0" NA NA
## HiC_scaffold_90_40624104 "1/1" "1/1" "0/0"
## HiC_scaffold_91_5644765 "1|1" NA "0/0"
## HiC_scaffold_91_5867214 NA "1|1" "1|1"
## HiC_scaffold_91_5867226 "0/0" "1|1" "1|1"
## HiC_scaffold_91_7704263 "1|1" "0/0" NA
## HiC_scaffold_91_7871360 NA "1/1" "0/0"
## HiC_scaffold_91_8538014 "1/1" NA "0/0"
## HiC_scaffold_91_13230485 "0/0" "1|1" "0/0"
## HiC_scaffold_91_28696118 "1/1" "0/0" "0/0"
## HiC_scaffold_91_28696625 "0/1" NA "0/0"
## HiC_scaffold_91_42177482 "1/1" "1|1" "0/0"
## HiC_scaffold_91_46813640 NA "0/0" NA
## HiC_scaffold_92_23783035 "0/0" "0/0" "1/1"
## HiC_scaffold_92_23783036 "0/0" "0/0" "1/1"
## HiC_scaffold_92_24712793 "0/1" NA "1/1"
## HiC_scaffold_92_28698258 "0/1" "1|1" "1/1"
## HiC_scaffold_92_40691582 NA "0/0" "1/1"
## HiC_scaffold_92_43967712 "1/1" "0/0" "1/1"
## HiC_scaffold_92_47147572 "1|1" "1|1" NA
## HiC_scaffold_92_49042714 NA NA "1|1"
## HiC_scaffold_92_49042715 NA NA "1|1"
## HiC_scaffold_92_53634002 "0/0" "0/0" "1/1"
## HiC_scaffold_92_58211868 "0/0" NA NA
## HiC_scaffold_92_60114155 "0/0" NA "0/0"
## HiC_scaffold_92_63603483 NA "0/0" NA
## HiC_scaffold_92_64797225 NA "0/0" NA
## HiC_scaffold_92_68367476 "0|1" "2|2" "0/0"
## HiC_scaffold_93_1912167 "0/0" "0/1" "0/0"
## HiC_scaffold_93_2485978 "1/1" NA "0/0"
## HiC_scaffold_93_3227638 NA NA NA
## HiC_scaffold_93_3227641 NA "0/0" "0/0"
## HiC_scaffold_93_13971208 "1/1" "0/0" "1/1"
## HiC_scaffold_93_13987080 "0/0" NA NA
## HiC_scaffold_93_21125468 "1/1" NA "1/1"
## HiC_scaffold_93_21845293 NA "0/0" NA
## HiC_scaffold_93_21845310 NA "1|1" "0/0"
## HiC_scaffold_93_21846342 NA NA "0/0"
## HiC_scaffold_93_21846356 NA NA "1/1"
## HiC_scaffold_93_22589723 NA "0/1" "0/1"
## HiC_scaffold_93_22619278 "1/1" "1/1" "1/1"
## HiC_scaffold_93_22631258 "0/0" "0/0" NA
## HiC_scaffold_93_22631266 "0/0" "0/0" NA
## HiC_scaffold_94_3110102 "1/1" "1/1" NA
## HiC_scaffold_94_3205919 "0/0" NA NA
## HiC_scaffold_94_9023846 "0/0" NA NA
## HiC_scaffold_94_11572820 NA "1/1" "0/0"
## HiC_scaffold_94_12368532 "0/0" "0/0" "0/1"
## HiC_scaffold_94_42179418 "0/0" "1/1" "1/1"
## HiC_scaffold_94_42179519 "0/0" "0/0" "0/0"
## HiC_scaffold_94_51646206 NA NA "0/0"
## HiC_scaffold_94_52781289 "1/1" "0|1" NA
## HiC_scaffold_94_53790035 "0/0" NA NA
## HiC_scaffold_94_53792738 "1|1" "0/0" "1/1"
## HiC_scaffold_94_56768905 "0/0" NA "1|1"
## HiC_scaffold_946_81276 NA "0/0" "0/0"
## HiC_scaffold_95_3189690 "1/1" NA "1/1"
## HiC_scaffold_95_4397298 NA NA "0/1"
## HiC_scaffold_95_9469157 "0/0" "1|1" "1/1"
## HiC_scaffold_95_10641411 NA "1/1" "0/0"
## HiC_scaffold_95_10949821 "0/0" "1/1" NA
## HiC_scaffold_95_12993394 "0/0" "0|1" NA
## HiC_scaffold_95_15515793 "0/0" NA NA
## HiC_scaffold_95_15608785 "0/0" "0|1" "0/0"
## HiC_scaffold_95_15609137 NA NA "0/0"
## HiC_scaffold_95_16295316 "0/0" "0/0" NA
## HiC_scaffold_95_22656165 "0/0" NA NA
## HiC_scaffold_95_25885727 "0/1" "1/1" "1/1"
## HiC_scaffold_96_10460019 "0/0" "0/0" "0/0"
## HiC_scaffold_96_27155785 "0/0" "0/1" NA
## HiC_scaffold_96_37939434 NA "0/0" NA
## HiC_scaffold_96_51115048 "0/0" "1|1" "0/0"
## HiC_scaffold_96_51116511 "1/1" "1/1" "1/1"
## HiC_scaffold_96_51915040 "0/0" NA "0/0"
## HiC_scaffold_96_52681287 "1/1" NA NA
## HiC_scaffold_96_53276519 "0/0" "1/1" "0/0"
## HiC_scaffold_97_1736926 NA "1|1" "0/0"
## HiC_scaffold_97_1736994 "1|1" NA "0/0"
## HiC_scaffold_97_3863543 "0/0" "1/1" "1/1"
## HiC_scaffold_97_4200445 NA "0/0" "0/1"
## HiC_scaffold_97_4799162 "0/0" "0/0" NA
## HiC_scaffold_97_5027892 "1/1" "0/0" NA
## HiC_scaffold_97_8007933 NA "1/1" "1|1"
## HiC_scaffold_97_17997210 NA "0/0" "1|1"
## HiC_scaffold_97_18604647 NA "1/1" NA
## HiC_scaffold_97_20239636 "0/0" "0/0" "0/0"
## HiC_scaffold_98_15154096 "0/0" "0/0" NA
## HiC_scaffold_98_22342667 "1/1" NA "1|1"
## HiC_scaffold_98_22634293 "1|1" "1|1" "1|1"
## HiC_scaffold_98_22634294 "1|1" "1|1" "1|1"
## HiC_scaffold_98_22721138 "0/1" "1/1" "0/0"
## HiC_scaffold_98_22869378 "0/0" NA "0/0"
## HiC_scaffold_98_24108405 "1|1" "0/0" "0/0"
## HiC_scaffold_98_27359592 "0|1" NA "0/0"
## HiC_scaffold_98_28549834 NA "1/1" "0/0"
## HiC_scaffold_98_28867520 NA "0/0" "0|1"
## HiC_scaffold_98_28867524 NA "0/0" "0|1"
## HiC_scaffold_98_29431717 NA NA "0/0"
## HiC_scaffold_98_29675109 "0/0" "0/0" "1/1"
## HiC_scaffold_99_1163244 "0/0" "0/0" NA
## HiC_scaffold_99_1451611 "1/1" NA NA
## HiC_scaffold_99_2021961 "0/0" "0/0" NA
## HiC_scaffold_99_5134392 NA "0/0" "0/0"
## HiC_scaffold_99_5239109 NA NA "1/1"
## HiC_scaffold_99_6917738 "0/0" NA NA
## HiC_scaffold_99_11221970 NA NA "0|1"
## HiC_scaffold_99_25982503 "1/1" NA "1|1"
## Tank_3_Crab_1 Tank_3_Crab_2 Tank_3_Crab_3
## HiC_scaffold_1_2523394 NA "1/1" "1/1"
## HiC_scaffold_1_2542157 "1/1" "1/1" "0/0"
## HiC_scaffold_1_2647806 "1/1" "0/0" "0/1"
## HiC_scaffold_1_2970226 "1|1" "0/0" "0/0"
## HiC_scaffold_1_3329447 "0/0" "0/0" "0/0"
## HiC_scaffold_1_3795100 "1|1" "0|1" "1|1"
## HiC_scaffold_10_2221345 "0|1" "1|1" "0/0"
## HiC_scaffold_10_2299490 NA NA "0/0"
## HiC_scaffold_10_2565301 "1/1" NA "0/1"
## HiC_scaffold_10_3864355 "1/1" NA "0/0"
## HiC_scaffold_10_4319900 "0/0" NA "0/0"
## HiC_scaffold_10_4319907 "0/0" NA "0/0"
## HiC_scaffold_10_5404579 "0/0" NA "0/0"
## HiC_scaffold_10_5843373 "1/1" "0/0" "0/0"
## HiC_scaffold_100_854947 "1|1" "0/0" NA
## HiC_scaffold_100_1070817 "0|1" NA "1/1"
## HiC_scaffold_100_2002094 "1|1" "1|1" "1|1"
## HiC_scaffold_100_2002097 "1|1" "1|1" "1|1"
## HiC_scaffold_100_2010331 NA NA "0/0"
## HiC_scaffold_100_5186498 "1/1" NA "1/1"
## HiC_scaffold_100_5828477 "0/0" NA "1/1"
## HiC_scaffold_100_6470419 NA "0/0" "0|1"
## HiC_scaffold_100_6739225 NA "0/0" NA
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## HiC_scaffold_100_6907177 NA NA NA
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## HiC_scaffold_102_24788723 "0/0" NA NA
## HiC_scaffold_102_25423729 "1|1" NA "1|1"
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## HiC_scaffold_102_52046978 "1/1" NA "0/0"
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## HiC_scaffold_103_9521272 "1/1" "1/1" "1/1"
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## HiC_scaffold_103_21284866 "0/0" NA "0/0"
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## HiC_scaffold_103_45921571 "0/0" NA "0/0"
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## HiC_scaffold_103_50440915 NA "0/0" "1|1"
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## HiC_scaffold_103_54308582 "0/0" NA "0/1"
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## HiC_scaffold_103_57470264 "1|1" NA "0/0"
## HiC_scaffold_104_7771140 "1/1" "1/1" "1/1"
## HiC_scaffold_104_9103028 "1/1" NA "1/1"
## HiC_scaffold_104_10633168 "0/0" NA NA
## HiC_scaffold_104_18917031 "0/1" "1/1" "0/0"
## HiC_scaffold_104_20851902 "1/1" "0/0" "0/0"
## HiC_scaffold_104_24451803 "1/1" "0/0" "0/1"
## HiC_scaffold_104_28597688 "0/0" "1/1" "0/1"
## HiC_scaffold_104_40927999 NA "1/1" NA
## HiC_scaffold_104_46490074 "0/0" NA "0/1"
## HiC_scaffold_104_49759053 NA NA "0/0"
## HiC_scaffold_104_57267896 "1/1" "0/0" "0/0"
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## HiC_scaffold_11_32804173 "0/0" NA "1/1"
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## HiC_scaffold_11_35904027 "1/1" NA NA
## HiC_scaffold_11_41539793 "1|1" NA NA
## HiC_scaffold_11_41604080 "1|1" NA "1|1"
## HiC_scaffold_11_42855323 "1/1" "1/1" "1/1"
## HiC_scaffold_11_45339409 NA "0/0" "0/0"
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## HiC_scaffold_12_7515164 "0/0" "1/1" "0/0"
## HiC_scaffold_12_12640100 "1/1" "1/1" "0/1"
## HiC_scaffold_12_12826705 "1|1" "0/0" "0/0"
## HiC_scaffold_12_14899285 NA "1/1" "0/0"
## HiC_scaffold_12_17465672 NA NA "0/0"
## HiC_scaffold_12_22770710 "1|1" "0/0" "0/0"
## HiC_scaffold_12_32318964 "1|1" NA NA
## HiC_scaffold_12_35136373 NA "0/0" "0/0"
## HiC_scaffold_12_40687860 "0/0" "0/0" NA
## HiC_scaffold_13_2938168 "1/1" "1/1" "1/1"
## HiC_scaffold_13_20350974 NA NA "0/0"
## HiC_scaffold_13_27759554 "0/0" NA "0/0"
## HiC_scaffold_13_28146828 "2|2" "0/0" "1|1"
## HiC_scaffold_13_28146830 "2|2" "0/0" "1|1"
## HiC_scaffold_13_28925343 "1/1" "0/1" "1/1"
## HiC_scaffold_13_31913129 "1/1" "1/1" "0/0"
## HiC_scaffold_13_32078924 NA NA "1|1"
## HiC_scaffold_13_33864805 "1/1" "0/0" "1/1"
## HiC_scaffold_13_34892542 "0/0" "0/0" "1/1"
## HiC_scaffold_13_34893103 "1/1" "1/1" "0/0"
## HiC_scaffold_13_35762551 "1|1" "1|1" "0|1"
## HiC_scaffold_13_35881745 "1|1" NA "1|1"
## HiC_scaffold_13_35881749 "1|1" "0/0" "1|1"
## HiC_scaffold_14_3843214 "0/0" "0/0" "0/0"
## HiC_scaffold_14_25884262 "1|1" NA "0/0"
## HiC_scaffold_14_27050415 NA NA NA
## HiC_scaffold_14_27118495 "1/1" "1/1" "1/1"
## HiC_scaffold_14_27277222 "0/0" NA "1/1"
## HiC_scaffold_14_29215814 NA NA NA
## HiC_scaffold_15_2460398 "0/0" "0/0" "1|1"
## HiC_scaffold_15_2462980 "1/1" NA NA
## HiC_scaffold_15_2467289 "1/1" NA "1/1"
## HiC_scaffold_15_5669141 NA "1/1" "1/1"
## HiC_scaffold_15_13700694 "0/1" "0/1" "0/0"
## HiC_scaffold_15_17825275 NA "1|1" NA
## HiC_scaffold_15_19938475 "1/1" "0/0" "1/1"
## HiC_scaffold_15_23865956 "0/0" "1|1" "1|1"
## HiC_scaffold_15_28837774 NA NA "0/0"
## HiC_scaffold_15_28837810 NA NA "1/1"
## HiC_scaffold_15_28837823 NA "0/0" "0/0"
## HiC_scaffold_15_28837835 NA NA "0|1"
## HiC_scaffold_15_28837841 NA NA "0|1"
## HiC_scaffold_15_28837854 NA "0/0" "0/0"
## HiC_scaffold_15_34827832 "0/0" "1/1" "0/0"
## HiC_scaffold_15_34893807 "1/1" "1/1" "1/1"
## HiC_scaffold_15_35327348 "1/1" "0/1" "0/0"
## HiC_scaffold_15_42161112 "0|0" NA "0/0"
## HiC_scaffold_15_42164926 NA "0/0" "0|1"
## HiC_scaffold_15_42164946 NA "0/0" "1/1"
## HiC_scaffold_15_46289572 "1/1" "1/1" "1/1"
## HiC_scaffold_15_50591576 "0/0" "1|1" "1|1"
## HiC_scaffold_15_50759128 NA "0/0" "1/1"
## HiC_scaffold_15_51188336 NA "0/0" "1|1"
## HiC_scaffold_15_54726640 "1/1" "1/1" "0/1"
## HiC_scaffold_15_54788235 NA NA "0/0"
## HiC_scaffold_15_56162375 "0/0" "0/0" "1|1"
## HiC_scaffold_15_61091106 "1/1" "0/0" "0/1"
## HiC_scaffold_15_61464359 NA "1/1" "1/1"
## HiC_scaffold_15_61510386 "1/1" NA "1/1"
## HiC_scaffold_15_62309788 NA "0/0" "0/0"
## HiC_scaffold_15_62309793 NA "0/0" "0/0"
## HiC_scaffold_15_62771254 NA "1/1" "0/0"
## HiC_scaffold_15_63493927 NA NA "1/1"
## HiC_scaffold_15_64997502 "0/0" "1/1" "1/1"
## HiC_scaffold_15_65007865 "0|1" "1|1" "1|1"
## HiC_scaffold_15_65007879 "0|1" "1|1" "0/0"
## HiC_scaffold_15_66038529 "1/1" "0/0" "0/1"
## HiC_scaffold_15_69811281 "1/1" "1|1" "1/1"
## HiC_scaffold_16_14205925 "0/0" "0/1" "0/0"
## HiC_scaffold_16_30404047 "0/0" "0|1" "0/0"
## HiC_scaffold_16_57413288 "1|1" "0/0" "1|1"
## HiC_scaffold_16_63687578 "0/0" NA "0/0"
## HiC_scaffold_16_74138787 "0/0" NA "0/0"
## HiC_scaffold_16_74140106 "0/0" NA "0/0"
## HiC_scaffold_16_76276015 NA NA "0/0"
## HiC_scaffold_17_11390873 "1|1" "1|1" "0|1"
## HiC_scaffold_17_12551128 "0/1" NA "1/1"
## HiC_scaffold_17_16615612 NA NA "0/0"
## HiC_scaffold_17_18838093 NA NA "0/0"
## HiC_scaffold_17_22801072 "0/1" NA "0/0"
## HiC_scaffold_17_23788599 "0/1" NA "0/0"
## HiC_scaffold_17_29383895 "1/1" "0/0" "1/1"
## HiC_scaffold_17_29618771 "0/0" NA "0/1"
## HiC_scaffold_17_29976139 "1/1" "0/0" "1/1"
## HiC_scaffold_17_31107213 "1/1" "1/1" "1/1"
## HiC_scaffold_17_32493792 NA "0|1" "0/1"
## HiC_scaffold_17_33732050 NA "0/0" "1/1"
## HiC_scaffold_17_33801314 "0/0" NA "1|1"
## HiC_scaffold_17_34081889 "1/1" NA "1/1"
## HiC_scaffold_18_227565 "0/0" "0/1" "1/1"
## HiC_scaffold_18_1213486 "1/1" NA "1/1"
## HiC_scaffold_18_1701312 NA "0/0" "0/0"
## HiC_scaffold_18_3506437 "1/1" NA "0/1"
## HiC_scaffold_18_6304978 "1/1" "0/0" "1/1"
## HiC_scaffold_18_6351493 "0/1" "1/1" "1/1"
## HiC_scaffold_18_6358009 "0/0" "0/0" "1/1"
## HiC_scaffold_18_10770701 "0/0" "0/1" "1/1"
## HiC_scaffold_18_13342858 "0/0" "1/1" "1/1"
## HiC_scaffold_18_20045832 "0/0" NA "0/0"
## HiC_scaffold_18_22682683 "0/0" "1/1" "0/0"
## HiC_scaffold_18_26337790 NA "1|1" "0/0"
## HiC_scaffold_18_48929148 "0/0" "0/0" "0/0"
## HiC_scaffold_18_51490626 "1/1" "0/0" "0/0"
## HiC_scaffold_18_53723137 "0/0" NA "0/1"
## HiC_scaffold_18_54496637 NA NA "1|1"
## HiC_scaffold_18_55294388 NA NA "1/1"
## HiC_scaffold_19_279726 "1/1" "0/1" NA
## HiC_scaffold_19_6426572 "0/0" "0/0" "1/1"
## HiC_scaffold_19_6575887 NA "1|1" "1|1"
## HiC_scaffold_19_7755254 "0/0" NA "0/0"
## HiC_scaffold_19_9301421 NA NA NA
## HiC_scaffold_19_9357388 "1|1" NA "1|1"
## HiC_scaffold_19_9778841 "1/1" NA "1/1"
## HiC_scaffold_19_10928976 "0/0" "1|1" "0/0"
## HiC_scaffold_19_10928980 "0/0" "1|1" "0/0"
## HiC_scaffold_19_10928982 "1|1" "0/0" "1|1"
## HiC_scaffold_19_11106347 NA "0/0" "0/0"
## HiC_scaffold_19_11590139 "1|1" "0/0" "0/0"
## HiC_scaffold_19_11665300 "1/1" "0/0" "1/1"
## HiC_scaffold_19_14793640 NA "1/1" "1/1"
## HiC_scaffold_19_22112743 NA NA "0/0"
## HiC_scaffold_19_25473671 "1/1" "1/1" "0/0"
## HiC_scaffold_19_25473692 "1/1" "1/1" "0/0"
## HiC_scaffold_19_28110829 "1|1" NA NA
## HiC_scaffold_19_28465002 NA NA "1/1"
## HiC_scaffold_19_28465167 "0/0" "0/0" "1/1"
## HiC_scaffold_19_30106869 NA "1|1" "0/1"
## HiC_scaffold_19_52538858 NA "1/1" "0/0"
## HiC_scaffold_19_52596196 "1/1" NA "0|1"
## HiC_scaffold_19_53482993 "1/1" "1/1" "0/0"
## HiC_scaffold_19_54312637 NA "1/1" "1/1"
## HiC_scaffold_19_59345841 "1|1" NA "1|1"
## HiC_scaffold_2_3296144 "1|1" "1|1" "1|1"
## HiC_scaffold_2_3418589 "0/0" "0/1" "0/0"
## HiC_scaffold_2_3864060 NA "0/0" "0/1"
## HiC_scaffold_2_4104755 "0/0" "0/0" NA
## HiC_scaffold_2_4104758 "0/0" "0/0" NA
## HiC_scaffold_2_8316721 "1|1" NA "0/1"
## HiC_scaffold_2_9098999 "0/0" NA "1/1"
## HiC_scaffold_2_10457537 "0/0" "0/0" "1/1"
## HiC_scaffold_2_19048125 "0/0" "1/1" "1/1"
## HiC_scaffold_2_21748201 NA "1/1" "1/1"
## HiC_scaffold_2_33187764 NA NA "0/0"
## HiC_scaffold_2_33187770 NA NA "0/0"
## HiC_scaffold_2_33187959 NA NA NA
## HiC_scaffold_2_41603929 "1/1" "0/1" "1/1"
## HiC_scaffold_2_52233191 "0/0" NA "0/0"
## HiC_scaffold_2_52400748 "1/1" NA "1/1"
## HiC_scaffold_2_52403793 NA "1|1" "1|1"
## HiC_scaffold_2_52799130 "1/1" "1|1" "1/1"
## HiC_scaffold_20_10332897 NA "0/0" "0/1"
## HiC_scaffold_20_17198418 "1|1" NA "0/0"
## HiC_scaffold_20_17915398 "0/0" NA NA
## HiC_scaffold_20_18872955 NA NA "0/0"
## HiC_scaffold_20_19055301 NA "1/1" "1/1"
## HiC_scaffold_20_19150094 "0/0" NA "1/1"
## HiC_scaffold_20_20651022 NA NA "0/1"
## HiC_scaffold_20_22651296 "1/1" "0/1" "0/1"
## HiC_scaffold_21_2009156 NA NA "0|1"
## HiC_scaffold_21_2435648 "0/0" NA "1/1"
## HiC_scaffold_21_7164210 "1|1" "0/0" "0/0"
## HiC_scaffold_21_9786512 "0/0" NA "0/0"
## HiC_scaffold_21_12424922 NA "1/1" "1/1"
## HiC_scaffold_21_17966833 "1/1" NA "1/1"
## HiC_scaffold_21_19025429 "0/0" "1/1" "0/0"
## HiC_scaffold_21_20058318 "1/1" "0/0" NA
## HiC_scaffold_21_20562855 NA NA "0/1"
## HiC_scaffold_21_20661860 "1|1" "0|1" "0/0"
## HiC_scaffold_21_20895395 "1|1" "1|1" "0|1"
## HiC_scaffold_21_21158811 NA NA "1|1"
## HiC_scaffold_21_22250857 "1/1" "1/1" "1/1"
## HiC_scaffold_21_22250866 "0/0" "0/1" "0/1"
## HiC_scaffold_21_22257737 "1/1" NA "0/1"
## HiC_scaffold_21_22644667 "0/0" NA "1|1"
## HiC_scaffold_21_22644673 "0/0" NA "1|1"
## HiC_scaffold_21_22666888 "0/0" "0/0" "0/1"
## HiC_scaffold_21_23905416 "0/0" NA "1|1"
## HiC_scaffold_21_23981651 NA NA "1|1"
## HiC_scaffold_21_24287068 NA NA "0/0"
## HiC_scaffold_21_30798434 "1|1" "0/0" "0/1"
## HiC_scaffold_21_35006232 "0/0" "1/1" "1/1"
## HiC_scaffold_21_35779294 "0/0" NA "0/1"
## HiC_scaffold_22_124910 NA "1/1" "0/1"
## HiC_scaffold_22_751023 NA "0/0" "0/1"
## HiC_scaffold_22_1042644 "0/0" NA "1|1"
## HiC_scaffold_22_1044708 "0/1" NA "1/1"
## HiC_scaffold_22_2174911 "1|1" "1/1" "1/1"
## HiC_scaffold_22_3431122 "1|1" NA NA
## HiC_scaffold_22_3446787 "0|0" "0/0" "0|0"
## HiC_scaffold_22_3451756 "0|1" "1|1" "1/1"
## HiC_scaffold_22_3720435 "1/1" NA "1/1"
## HiC_scaffold_22_4065466 NA "1|1" "0/0"
## HiC_scaffold_22_4739889 "0/0" NA "0/2"
## HiC_scaffold_22_4918263 "0/0" "1|1" "1|1"
## HiC_scaffold_22_5750008 NA NA "1/1"
## HiC_scaffold_22_5769942 "0/0" NA "0/0"
## HiC_scaffold_22_28264522 "0/1" "0/0" "0/0"
## HiC_scaffold_22_28265115 "1/1" "1/1" "0/1"
## HiC_scaffold_22_29205851 "1/1" "1/1" "1/1"
## HiC_scaffold_22_29822340 "1/1" NA "0/0"
## HiC_scaffold_22_30797357 NA NA "0/0"
## HiC_scaffold_22_32042610 "1|1" "1|1" "1|1"
## HiC_scaffold_23_11215327 "0/0" "1/1" "0/0"
## HiC_scaffold_23_27081333 "1/1" "0|1" "1/1"
## HiC_scaffold_23_28672255 "1/1" "0/0" "0/0"
## HiC_scaffold_23_29218828 "1/1" "0/0" NA
## HiC_scaffold_23_32528768 "1|1" "1|1" "0/0"
## HiC_scaffold_23_32669383 "0/0" "1/1" "0/0"
## HiC_scaffold_23_33199663 "0/1" "0/0" "0/0"
## HiC_scaffold_23_33245843 "0/0" "0/0" "0/0"
## HiC_scaffold_23_40824545 "0|1" "0|1" "0/0"
## HiC_scaffold_23_41504669 NA "0/0" "0/0"
## HiC_scaffold_24_16622654 "0/0" "1/1" "1/1"
## HiC_scaffold_24_16622681 "0/0" "1/1" "1/1"
## HiC_scaffold_24_19851560 "1|1" "0|1" "1|1"
## HiC_scaffold_24_20590563 "1/1" "1/1" "1/1"
## HiC_scaffold_24_27745754 "1/1" NA NA
## HiC_scaffold_24_28763699 NA "1|1" "1|1"
## HiC_scaffold_24_28763703 NA "1|1" "1|1"
## HiC_scaffold_25_4135969 "0/0" NA "0/0"
## HiC_scaffold_25_4201677 "0/0" "0/0" "0/0"
## HiC_scaffold_25_5872831 "0/0" NA "0/0"
## HiC_scaffold_25_6879627 NA NA "0/0"
## HiC_scaffold_25_8172813 "1|1" "1/1" "0/1"
## HiC_scaffold_25_9969507 "1|1" "1/1" NA
## HiC_scaffold_25_10691336 NA "0/0" "0|1"
## HiC_scaffold_25_21286462 "1/1" NA "0/0"
## HiC_scaffold_26_4086662 "0/1" "0/0" "0/0"
## HiC_scaffold_26_7539671 "1|1" NA "1|1"
## HiC_scaffold_26_8348511 NA NA "1/1"
## HiC_scaffold_26_9043748 "1|1" "1|1" "0|1"
## HiC_scaffold_26_9045655 "0/0" "0/0" "0/0"
## HiC_scaffold_26_11253181 "0/1" "0/0" "0/0"
## HiC_scaffold_26_17828344 "1/1" NA "1/1"
## HiC_scaffold_26_17932520 NA NA "1/1"
## HiC_scaffold_26_17941459 NA "0/0" "0/0"
## HiC_scaffold_26_17960877 "1/1" "1/1" "1/1"
## HiC_scaffold_26_18284041 NA NA "0/0"
## HiC_scaffold_26_18288701 "0|1" "1|1" "0|1"
## HiC_scaffold_26_18294422 "0/0" NA "0/1"
## HiC_scaffold_26_21307365 NA NA "1/1"
## HiC_scaffold_26_22159924 "1/1" NA "1/1"
## HiC_scaffold_26_22161535 NA "0/0" "1/1"
## HiC_scaffold_26_24794176 "1/1" "1/1" "1/1"
## HiC_scaffold_26_28538113 NA NA NA
## HiC_scaffold_26_29031357 NA NA "1/1"
## HiC_scaffold_26_29163462 "0/0" NA "0/0"
## HiC_scaffold_26_42631018 "1|1" NA "0/0"
## HiC_scaffold_26_42634814 "1/1" "0/0" NA
## HiC_scaffold_26_43483190 "0/0" "0/0" "1/1"
## HiC_scaffold_26_49955889 "0/1" NA "0/1"
## HiC_scaffold_26_58342510 "0/0" NA "1|1"
## HiC_scaffold_27_1496120 "0/0" "0/1" "0/0"
## HiC_scaffold_27_1947057 "0/0" NA "1|1"
## HiC_scaffold_27_2359058 NA "0/0" "1|1"
## HiC_scaffold_27_2699645 "1/1" NA "0/1"
## HiC_scaffold_27_4425475 NA "0|1" "0/0"
## HiC_scaffold_27_7539469 "0/0" "0/0" "0/1"
## HiC_scaffold_27_7777122 NA "0/0" "0/0"
## HiC_scaffold_27_16657070 "1/1" "1/1" "1/1"
## HiC_scaffold_27_24539255 "0|0" NA NA
## HiC_scaffold_27_34642359 NA "0/0" "1|1"
## HiC_scaffold_27_34647277 "0/0" "0/0" "0/0"
## HiC_scaffold_27_35380535 "1/1" NA "1/1"
## HiC_scaffold_27_35383230 NA "1|1" "0/0"
## HiC_scaffold_28_21261390 "1|1" "0/0" "1|1"
## HiC_scaffold_28_24490442 "1|1" NA NA
## HiC_scaffold_28_25601927 "1/1" NA "0/0"
## HiC_scaffold_28_31793968 NA "2|2" "0/0"
## HiC_scaffold_28_32126687 "0/0" "0/0" "1/1"
## HiC_scaffold_28_34779518 "1/1" "1/1" "1/1"
## HiC_scaffold_28_36042491 "1/1" "0/0" "0/1"
## HiC_scaffold_28_36692361 NA NA NA
## HiC_scaffold_28_38672993 "1|1" "0/0" NA
## HiC_scaffold_28_39640526 "0/0" NA "1/1"
## HiC_scaffold_28_40169242 NA "0/0" NA
## HiC_scaffold_28_41059640 NA NA "1/1"
## HiC_scaffold_28_42514830 "0/1" NA NA
## HiC_scaffold_28_42601570 "0/1" NA "0/1"
## HiC_scaffold_28_42601585 "0/0" "0/0" "0/1"
## HiC_scaffold_28_43018803 "0/1" "0/0" "1/1"
## HiC_scaffold_28_43036165 "1/1" "0/0" "0/1"
## HiC_scaffold_29_344317 "0/0" "1/1" "0/1"
## HiC_scaffold_29_3811176 NA NA "1|1"
## HiC_scaffold_29_6073993 "0|1" "0/0" "0/0"
## HiC_scaffold_29_6415222 "0/0" "0/0" "0/0"
## HiC_scaffold_29_8224424 "0/0" NA "0/1"
## HiC_scaffold_29_11153624 "0/0" "1/1" NA
## HiC_scaffold_29_11153712 NA "1/1" "1/1"
## HiC_scaffold_29_11167966 NA "0/0" "0/0"
## HiC_scaffold_29_11491468 NA NA "0/0"
## HiC_scaffold_29_12103558 "0/0" "0/0" "1|1"
## HiC_scaffold_29_14279322 "0/0" NA "0/1"
## HiC_scaffold_29_14913907 NA "0/0" "0/0"
## HiC_scaffold_29_16378276 "1/1" "1/1" "1/1"
## HiC_scaffold_29_20635937 "0/1" "0/0" "0/1"
## HiC_scaffold_29_20636787 "0/1" "0/0" "0/0"
## HiC_scaffold_29_22560215 "1/1" "1/1" "1/1"
## HiC_scaffold_29_22561144 "1/1" NA "0/0"
## HiC_scaffold_29_24017849 "0/0" "0/0" "1/1"
## HiC_scaffold_29_31603590 "1/1" NA "0/0"
## HiC_scaffold_3_21670751 "0/0" "0/0" "0/1"
## HiC_scaffold_3_24747014 "0/1" "1/1" "0/1"
## HiC_scaffold_3_27861792 "0/0" "0/0" "0/1"
## HiC_scaffold_3_28057869 "0/0" NA "0/0"
## HiC_scaffold_3_28441436 "0/0" NA "1/1"
## HiC_scaffold_3_28694380 NA NA "1|1"
## HiC_scaffold_3_31361023 NA NA "0/1"
## HiC_scaffold_3_31960572 "0/0" "0/0" "1|1"
## HiC_scaffold_3_32157169 "0/0" "0/0" "0/1"
## HiC_scaffold_3_32159152 "0/1" "0/0" "0/1"
## HiC_scaffold_3_34124237 NA "1/1" "0/0"
## HiC_scaffold_30_14199802 "0/0" "0/0" "1/1"
## HiC_scaffold_30_16052331 "1/1" "1/1" "1/1"
## HiC_scaffold_30_19914075 "1/1" "0/0" "1/1"
## HiC_scaffold_30_20688783 "1/1" NA "1/1"
## HiC_scaffold_30_21446076 NA "0/0" "0/0"
## HiC_scaffold_30_21598563 "1/1" "0/1" "0/0"
## HiC_scaffold_30_22155728 NA "0/0" "0|1"
## HiC_scaffold_31_687411 NA NA "0/0"
## HiC_scaffold_31_3224722 NA "0/0" "0/0"
## HiC_scaffold_31_3574854 "0/0" "0/1" "1/1"
## HiC_scaffold_31_5899551 NA "1/1" "1/1"
## HiC_scaffold_31_5911491 "0/0" NA "0/0"
## HiC_scaffold_31_6297680 "1/1" "0/0" "0/0"
## HiC_scaffold_31_12394016 "1|1" "1/1" NA
## HiC_scaffold_31_12394040 "0/0" "0/0" NA
## HiC_scaffold_31_18612650 "0/0" "1/1" "0/0"
## HiC_scaffold_32_4446859 NA "0/0" "0/1"
## HiC_scaffold_32_5274796 "0/0" NA "1/1"
## HiC_scaffold_32_5275108 "1/1" "0/0" "0/0"
## HiC_scaffold_32_5282358 "0/0" "0/1" "0/0"
## HiC_scaffold_32_5450203 "1|1" NA "0/0"
## HiC_scaffold_32_44200178 "0/0" "0/0" "1/1"
## HiC_scaffold_33_638523 "0/0" "1|1" "1/1"
## HiC_scaffold_33_44489563 "0/0" NA "0/0"
## HiC_scaffold_33_44489988 "1/1" "0/0" "0/0"
## HiC_scaffold_33_47080180 "0/0" NA "0/0"
## HiC_scaffold_33_47495907 "1|1" NA "0/0"
## HiC_scaffold_33_51865876 "1/1" "0/0" "0/1"
## HiC_scaffold_34_1096982 "1/1" "0/1" "0/0"
## HiC_scaffold_34_6091943 NA NA "1/1"
## HiC_scaffold_34_6100160 "1|1" NA "1|1"
## HiC_scaffold_34_24368584 "0/0" "1/1" "1/1"
## HiC_scaffold_35_3233120 "0/0" "0/1" "0/1"
## HiC_scaffold_35_3253574 "1/1" "0/1" "0/1"
## HiC_scaffold_35_5512296 "0/0" NA "0/1"
## HiC_scaffold_35_15114788 "1/1" "1/1" "1/1"
## HiC_scaffold_35_21214090 "0/0" "0/0" "1/1"
## HiC_scaffold_35_21462564 "0/0" "0/0" NA
## HiC_scaffold_35_22746783 "1/1" "1/1" "1/1"
## HiC_scaffold_35_22747085 NA NA "1|1"
## HiC_scaffold_35_23059580 "0/0" "1/1" "1/1"
## HiC_scaffold_35_23158882 "1/1" NA "1/1"
## HiC_scaffold_35_23261143 "1/1" "1/1" "1/1"
## HiC_scaffold_35_24403602 "0/0" "0/0" "0|1"
## HiC_scaffold_35_24403620 NA NA "1|1"
## HiC_scaffold_35_24993986 NA "1|1" "1/1"
## HiC_scaffold_35_24993998 "0/0" "1|1" "1|1"
## HiC_scaffold_36_1538038 NA NA "0/0"
## HiC_scaffold_36_2464728 "0/1" "0/0" "1/1"
## HiC_scaffold_36_5489050 "0/0" "0/1" "1/1"
## HiC_scaffold_36_9673981 "0|1" NA "0/1"
## HiC_scaffold_36_9674127 "1/1" "0/0" "1/1"
## HiC_scaffold_36_9674756 NA "0/0" "1/1"
## HiC_scaffold_36_9676329 "1/1" "1/1" "1/1"
## HiC_scaffold_36_12304516 "0/0" "0/1" "1/1"
## HiC_scaffold_36_12515555 "1|1" "0/0" "1|1"
## HiC_scaffold_36_13092647 "0/0" NA NA
## HiC_scaffold_36_13766994 "0/0" NA "1/1"
## HiC_scaffold_36_14567741 NA NA "1/1"
## HiC_scaffold_36_15530578 NA "1|1" "1|1"
## HiC_scaffold_37_679894 NA NA "1/1"
## HiC_scaffold_37_916693 NA "0/0" "1/1"
## HiC_scaffold_37_928146 "0/0" "0/0" "1/1"
## HiC_scaffold_37_1256768 NA NA "0/0"
## HiC_scaffold_37_1270034 "1/1" NA "1/1"
## HiC_scaffold_37_1770997 "0/0" "0/0" "0/0"
## HiC_scaffold_37_1798298 "1/1" NA "0|1"
## HiC_scaffold_37_2010342 "0/0" "0/0" "1|1"
## HiC_scaffold_37_2141526 NA NA "0/0"
## HiC_scaffold_37_3952190 "0/0" NA "0|1"
## HiC_scaffold_37_3952215 "0/0" NA "0|1"
## HiC_scaffold_37_9915037 NA "1/1" "0/0"
## HiC_scaffold_38_5383430 NA "0/0" "0/0"
## HiC_scaffold_38_5668363 NA "0/1" "0/0"
## HiC_scaffold_38_5879849 "1/1" "0/0" "0|1"
## HiC_scaffold_38_5880155 "1/1" "1/1" "0/1"
## HiC_scaffold_38_10612790 "0/0" NA NA
## HiC_scaffold_38_11940240 "0/0" NA "1/1"
## HiC_scaffold_38_12878826 "0/0" "1/1" "0/0"
## HiC_scaffold_38_12959698 "0/0" NA "0/1"
## HiC_scaffold_38_13087368 NA NA NA
## HiC_scaffold_38_13480648 "1/1" NA "0|1"
## HiC_scaffold_38_13965243 "1/1" "1/1" "1/1"
## HiC_scaffold_38_14089955 "0/0" "0/0" "0/0"
## HiC_scaffold_38_14408072 "0/0" "0/0" "0/0"
## HiC_scaffold_38_14931216 "0|1" "1/1" "1/1"
## HiC_scaffold_38_14978356 "0/0" NA "0/0"
## HiC_scaffold_38_14978367 "0/0" NA "0/0"
## HiC_scaffold_38_15292863 NA NA "1/1"
## HiC_scaffold_38_15306135 "0/0" "0/0" "0/0"
## HiC_scaffold_38_16077506 NA "0/0" "0/0"
## HiC_scaffold_38_16138965 "1/1" "1/1" "0/1"
## HiC_scaffold_38_16226040 NA NA "0/0"
## HiC_scaffold_39_1393769 NA "1|1" "1|1"
## HiC_scaffold_39_2014970 "0/0" "0/0" "0|1"
## HiC_scaffold_39_2014982 "0/0" NA "0|1"
## HiC_scaffold_39_2014985 "0/0" NA "0|1"
## HiC_scaffold_39_2426443 "0/0" "0|1" "1|1"
## HiC_scaffold_39_2485330 "0/0" NA "1/1"
## HiC_scaffold_39_3350506 "0/0" "0/0" "1|1"
## HiC_scaffold_39_5897388 "1|1" "0/0" "1|1"
## HiC_scaffold_39_17631133 "0/0" NA "0/0"
## HiC_scaffold_4_12107187 "0/1" "0/0" "0/0"
## HiC_scaffold_4_18241670 NA NA "1|1"
## HiC_scaffold_4_18241723 NA "1|1" NA
## HiC_scaffold_4_22418566 "0/0" NA "0|1"
## HiC_scaffold_4_27899990 NA "0/0" NA
## HiC_scaffold_4_35575118 "0/0" "0/0" "0/0"
## HiC_scaffold_4_38000967 "1/1" NA "1/1"
## HiC_scaffold_4_50654021 "0/0" NA "1|1"
## HiC_scaffold_40_2243415 "0/0" NA NA
## HiC_scaffold_40_3000572 NA "0/0" "0/0"
## HiC_scaffold_40_3014177 NA "0/0" "1|1"
## HiC_scaffold_40_3027900 "1|1" "0/0" NA
## HiC_scaffold_40_3143834 "0/0" "0/0" "0/0"
## HiC_scaffold_40_3843942 "1/1" NA "0/0"
## HiC_scaffold_40_3847620 "0/0" NA "1|1"
## HiC_scaffold_40_3891007 "1|1" "0/0" "0/0"
## HiC_scaffold_40_3920667 "2/2" "2/2" NA
## HiC_scaffold_40_4177963 "1/1" "0/0" "0/1"
## HiC_scaffold_40_4819107 "0/1" "0/0" "0/1"
## HiC_scaffold_40_4819834 "0/0" "1|1" "1|1"
## HiC_scaffold_40_5788271 "1/1" "0/0" "0|0"
## HiC_scaffold_40_5965269 NA "1|1" "1|1"
## HiC_scaffold_40_6204154 "0/0" NA NA
## HiC_scaffold_40_8387917 NA "0/1" "0|1"
## HiC_scaffold_41_3235384 "0/0" NA "0/0"
## HiC_scaffold_41_3583000 "0/0" "0/0" "0/0"
## HiC_scaffold_41_5334504 "1/1" "1|1" "1|1"
## HiC_scaffold_41_5387631 NA NA "0/0"
## HiC_scaffold_41_6423426 NA "0/0" "0/0"
## HiC_scaffold_41_14359947 "0/0" "0/0" "0/0"
## HiC_scaffold_41_24007593 "0/0" "0/0" "0|1"
## HiC_scaffold_41_26225447 "1|1" "0/0" "0/0"
## HiC_scaffold_41_28626484 "0/0" "1/1" "0/1"
## HiC_scaffold_41_28660620 NA NA "0/0"
## HiC_scaffold_41_31007688 "1/1" NA "1/1"
## HiC_scaffold_42_1131084 "0/0" "0/0" "1/1"
## HiC_scaffold_42_1818523 NA "0/0" "0/1"
## HiC_scaffold_42_2165002 "0/0" "2/2" "0/0"
## HiC_scaffold_42_2711332 "0/0" "1|1" "1|1"
## HiC_scaffold_42_6142699 "1/1" NA "1/1"
## HiC_scaffold_42_6744976 "0/0" NA "0/1"
## HiC_scaffold_42_8066919 "0/0" NA "0/0"
## HiC_scaffold_42_8068292 NA "0|1" NA
## HiC_scaffold_42_12487888 "0/1" "0|1" NA
## HiC_scaffold_42_41366687 "1/1" NA "1/1"
## HiC_scaffold_42_47313337 "0/0" "0/0" "0/0"
## HiC_scaffold_42_47313338 "0/0" "0/0" "0/0"
## HiC_scaffold_42_50784971 "1|1" "0/0" "1|1"
## HiC_scaffold_42_50784977 "1|1" NA "1|1"
## HiC_scaffold_42_50784981 "0/0" "0/0" "0/0"
## HiC_scaffold_42_51916989 "1/1" NA "1/1"
## HiC_scaffold_43_3842003 NA "1/1" "0/1"
## HiC_scaffold_43_14140861 "0/0" "0/0" "0/0"
## HiC_scaffold_43_15053605 NA "0/1" "1/1"
## HiC_scaffold_43_17289945 NA "0/0" "0/0"
## HiC_scaffold_43_29967704 "0/0" "1/1" "0/0"
## HiC_scaffold_43_35745831 NA "0/0" "0/0"
## HiC_scaffold_43_37627949 "0/0" NA NA
## HiC_scaffold_43_37628126 "0/1" "0/1" NA
## HiC_scaffold_43_44017118 "1/1" NA "0/0"
## HiC_scaffold_43_55124138 "1|1" "1|1" "1|1"
## HiC_scaffold_43_60107326 "1|1" "1|1" "1|1"
## HiC_scaffold_43_61359386 NA NA "0/0"
## HiC_scaffold_43_61702593 "0/0" NA "1|1"
## HiC_scaffold_43_61702606 "0/0" NA "1|1"
## HiC_scaffold_43_61702721 "1|1" NA "0/0"
## HiC_scaffold_43_61702738 "0/0" NA "0/1"
## HiC_scaffold_43_62511703 NA "0/0" "1|1"
## HiC_scaffold_43_64069457 "0/0" NA "1/1"
## HiC_scaffold_43_64577269 "1/1" "0/0" "1/1"
## HiC_scaffold_44_1920144 "1|1" NA "0/0"
## HiC_scaffold_44_2148035 "1/1" "0/0" "0/0"
## HiC_scaffold_44_2568167 "0/0" "0/0" "1/1"
## HiC_scaffold_45_4180070 NA "1/1" "1/1"
## HiC_scaffold_45_4797754 NA NA NA
## HiC_scaffold_45_5911123 "1|1" NA NA
## HiC_scaffold_45_6958990 NA NA "1/1"
## HiC_scaffold_45_8516216 "1|1" "0/0" "1|1"
## HiC_scaffold_45_10191213 "0|1" NA NA
## HiC_scaffold_45_12005885 "0/0" NA NA
## HiC_scaffold_45_12006766 "0/1" NA "1|1"
## HiC_scaffold_45_24736172 "0/0" "1/1" "1/1"
## HiC_scaffold_45_24739830 "0/0" "1|1" NA
## HiC_scaffold_46_9691567 "1|1" NA "1|1"
## HiC_scaffold_46_17380257 "0/0" "0/1" "0/0"
## HiC_scaffold_46_18387147 "0/0" NA "0|1"
## HiC_scaffold_46_37092355 "1|1" "1/1" "1|1"
## HiC_scaffold_46_39183624 "1/1" "1/1" "0/0"
## HiC_scaffold_46_39390547 NA "0/0" "1/1"
## HiC_scaffold_46_42964941 NA "1|1" NA
## HiC_scaffold_46_42986653 "0/0" "1/1" "0/1"
## HiC_scaffold_46_52074364 "1|1" "1|1" "1|1"
## HiC_scaffold_46_54255667 NA NA "1/1"
## HiC_scaffold_47_3750532 NA NA "0/0"
## HiC_scaffold_47_3751345 "0/0" "0|1" "1/1"
## HiC_scaffold_47_15400639 "1|1" NA "1|1"
## HiC_scaffold_47_24072414 "0/0" "0/0" "0/0"
## HiC_scaffold_47_25273825 NA "0/0" "1|1"
## HiC_scaffold_48_8752752 "0/0" NA "0/0"
## HiC_scaffold_48_10765920 "1/1" NA "0/0"
## HiC_scaffold_48_16077918 "0|1" "1|1" "0/0"
## HiC_scaffold_48_16077940 "0|1" "1|1" "0/0"
## HiC_scaffold_48_16411609 "0/0" "0/0" "1/1"
## HiC_scaffold_48_19972580 NA "1/1" "0/0"
## HiC_scaffold_48_23493079 "1|1" "0/0" "0/0"
## HiC_scaffold_48_23597210 "0/0" "0/0" "0/0"
## HiC_scaffold_48_24478493 "1/1" "0/0" NA
## HiC_scaffold_48_24881148 "0/0" "1/1" "0/1"
## HiC_scaffold_48_25865723 "1/1" "1/1" "0/0"
## HiC_scaffold_48_25984068 "1|1" "0/0" NA
## HiC_scaffold_48_25989079 NA "1/1" "1|1"
## HiC_scaffold_48_30601375 "0/0" "0/0" "1|1"
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## HiC_scaffold_48_41971562 "1/1" "0/0" "1/1"
## HiC_scaffold_49_3392801 "1|1" "0/0" "0/0"
## HiC_scaffold_49_6101692 "1/1" "1/1" "1/1"
## HiC_scaffold_49_7996315 NA "1/1" "0/0"
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## HiC_scaffold_49_9886007 "0/0" "1/1" "0/0"
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## HiC_scaffold_49_12741575 "0/0" NA "1/1"
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## HiC_scaffold_49_26655554 "0/0" "0/0" "0/1"
## HiC_scaffold_49_37568341 "0/1" NA "1/1"
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## HiC_scaffold_49_40002255 NA NA "1|1"
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## HiC_scaffold_49_42966376 NA NA "1|1"
## HiC_scaffold_5_801252 NA NA "0/1"
## HiC_scaffold_5_1446603 NA NA "0/0"
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## HiC_scaffold_5_1530759 "1|1" "0/0" "0/1"
## HiC_scaffold_5_1539275 "0/0" "1/1" "0/0"
## HiC_scaffold_5_1789576 NA NA NA
## HiC_scaffold_5_1808197 "0/1" NA "0/0"
## HiC_scaffold_5_1808204 "0/1" NA "1/1"
## HiC_scaffold_5_1943895 "1|1" NA "1|1"
## HiC_scaffold_5_1944469 "1/1" NA "1/1"
## HiC_scaffold_5_2857283 "0/0" "0/1" "1/1"
## HiC_scaffold_5_4061378 "1/1" "1/1" "0/1"
## HiC_scaffold_5_4340647 "0/0" NA "1|1"
## HiC_scaffold_5_4435246 "0/0" NA "1/1"
## HiC_scaffold_5_8868783 NA "0/0" "0/0"
## HiC_scaffold_50_4315969 "0/0" "0/1" "0/1"
## HiC_scaffold_50_11652296 "1/1" "1/1" "1|1"
## HiC_scaffold_50_11657309 "1/1" "1/1" "1/1"
## HiC_scaffold_50_15521027 NA "1|1" "0/1"
## HiC_scaffold_50_21050962 NA NA "0/1"
## HiC_scaffold_50_23686202 "0|1" "1|1" "0/1"
## HiC_scaffold_50_27393462 "0/0" NA "0|1"
## HiC_scaffold_50_42586883 "1/1" "1/1" "0/0"
## HiC_scaffold_50_45087211 "1/1" NA "1/1"
## HiC_scaffold_50_49796550 "1/1" "1/1" "1/1"
## HiC_scaffold_50_54383367 NA "1|1" "0/0"
## HiC_scaffold_50_63318678 "1/1" "1/1" "1/1"
## HiC_scaffold_51_3521000 NA NA "0/1"
## HiC_scaffold_51_4681905 "1/1" "1/1" "1/1"
## HiC_scaffold_51_6305599 NA NA "0/0"
## HiC_scaffold_51_8530818 "0/0" "1|1" "1|1"
## HiC_scaffold_51_11653312 "0/0" NA "0/1"
## HiC_scaffold_51_13138547 "0/1" "1/1" "1|1"
## HiC_scaffold_51_14457091 "0/0" "0/0" "0/0"
## HiC_scaffold_51_15512668 "0/0" NA "0/0"
## HiC_scaffold_51_17816346 "1/1" "1/1" "1/1"
## HiC_scaffold_51_19997934 "1|1" NA "1|1"
## HiC_scaffold_51_19997936 "1|1" NA "1|1"
## HiC_scaffold_51_20870773 "1/1" "0/0" "0/0"
## HiC_scaffold_51_26660104 "1|1" "0/0" "0/0"
## HiC_scaffold_51_40727521 NA "1|1" "0/0"
## HiC_scaffold_51_40892841 "0/0" "1/1" "0/1"
## HiC_scaffold_51_41717519 NA NA NA
## HiC_scaffold_51_42547638 "0/1" "0/0" "1/1"
## HiC_scaffold_52_3335804 "0/0" "0/0" "0/0"
## HiC_scaffold_52_4149130 "0/0" NA "0/0"
## HiC_scaffold_52_6893679 NA "1|1" "1|1"
## HiC_scaffold_52_13155416 NA "1/1" "1/1"
## HiC_scaffold_52_13155437 NA "1|1" "1|1"
## HiC_scaffold_52_13155442 NA "1|1" "1|1"
## HiC_scaffold_52_14885688 NA "0/1" "0/0"
## HiC_scaffold_52_14895078 "0/0" "1/1" "1/1"
## HiC_scaffold_52_15141791 "0/0" NA "0/0"
## HiC_scaffold_52_15743051 NA "0/0" "1/1"
## HiC_scaffold_52_15760201 "0/1" "0/1" "0/0"
## HiC_scaffold_52_15834589 NA "0/0" "1|1"
## HiC_scaffold_52_15841769 NA "0/0" "0/0"
## HiC_scaffold_52_15862421 "1|1" "0|1" "1|1"
## HiC_scaffold_52_15970970 "0/0" NA "0|1"
## HiC_scaffold_52_16275237 NA "1/1" "0/1"
## HiC_scaffold_52_16275240 "0/0" "0/0" "0/1"
## HiC_scaffold_52_16275290 "0/0" "0/0" "0/1"
## HiC_scaffold_52_16524164 "0/0" "0/0" "0/1"
## HiC_scaffold_52_16524572 "1/1" "1/1" "1/1"
## HiC_scaffold_52_16525647 "0/0" "1/1" "0/0"
## HiC_scaffold_52_16637047 "0/0" "0/0" "0/0"
## HiC_scaffold_52_17202127 "1|1" "0/0" "0/0"
## HiC_scaffold_52_17207724 "1/1" "1/1" "1/1"
## HiC_scaffold_52_17508820 "1|1" NA "1|1"
## HiC_scaffold_52_17547593 "0/1" NA "1/1"
## HiC_scaffold_52_17551239 "1/1" NA "0/0"
## HiC_scaffold_52_17560696 "1|1" "1|1" NA
## HiC_scaffold_52_17560699 "1|1" "1|1" NA
## HiC_scaffold_52_17741250 "0/0" NA "1/1"
## HiC_scaffold_52_17742260 NA "0/0" "1|1"
## HiC_scaffold_52_18340578 "1/1" NA NA
## HiC_scaffold_52_18415911 "0/0" "0/0" "1/1"
## HiC_scaffold_52_22189517 "1|1" "1/1" "0/1"
## HiC_scaffold_52_22526592 "0/1" "0/0" "0/0"
## HiC_scaffold_52_26393471 "0/0" NA "1/1"
## HiC_scaffold_52_26799380 NA "1/1" "1/1"
## HiC_scaffold_52_31871931 "0/0" NA "0/0"
## HiC_scaffold_52_31874283 "1|1" "1/1" "1|1"
## HiC_scaffold_52_31874287 "1|1" "0/0" "1|1"
## HiC_scaffold_52_32161053 NA NA "1|1"
## HiC_scaffold_52_33165557 "0/0" NA "0/1"
## HiC_scaffold_52_33897620 "1/1" "1/1" "0/0"
## HiC_scaffold_52_34763156 "1|1" "0/0" "1/1"
## HiC_scaffold_52_34763171 "1/1" "0|0" "0/1"
## HiC_scaffold_52_35174755 "0/0" NA "1|1"
## HiC_scaffold_52_35608453 "0/0" NA "0/0"
## HiC_scaffold_52_35608470 "0/0" NA "0/0"
## HiC_scaffold_52_39464728 "0/0" NA "0/0"
## HiC_scaffold_52_42141354 "0/0" "0/0" "1|1"
## HiC_scaffold_52_44675725 "1/1" NA "1/1"
## HiC_scaffold_52_49935920 "0/0" NA "1/1"
## HiC_scaffold_53_21789524 NA "0/0" "1/1"
## HiC_scaffold_53_25168042 NA "0/0" "0/0"
## HiC_scaffold_53_26398989 "0/0" "0/0" "0|1"
## HiC_scaffold_53_26398992 "0/0" "0/0" "0|1"
## HiC_scaffold_53_26398994 "0/0" "0/0" "0|1"
## HiC_scaffold_53_26549665 "0/0" "0/0" NA
## HiC_scaffold_53_29227676 "0/0" NA "1|1"
## HiC_scaffold_53_31250349 "1/1" NA NA
## HiC_scaffold_54_530581 "1|1" NA "1|1"
## HiC_scaffold_54_794095 "0/0" "1|1" "1|1"
## HiC_scaffold_54_1171109 "1|1" "0/0" "0/0"
## HiC_scaffold_54_1378956 "0/0" "0/0" "0/0"
## HiC_scaffold_54_1380539 "0/0" NA "1/1"
## HiC_scaffold_54_3045015 NA NA "1/1"
## HiC_scaffold_54_3185987 "0/0" NA "0/0"
## HiC_scaffold_54_4401098 "0/0" NA "0/0"
## HiC_scaffold_54_5595903 "1/1" "1/1" "0/1"
## HiC_scaffold_54_5595921 "1/1" "0/0" "0/1"
## HiC_scaffold_54_5595928 "0/0" "0/0" "1|1"
## HiC_scaffold_54_5595949 "0/1" "1/1" "0/0"
## HiC_scaffold_54_6649662 NA "0/0" "0/1"
## HiC_scaffold_54_8036734 "1|1" "1|1" "1|1"
## HiC_scaffold_54_9206614 "0/0" "0/0" "1/1"
## HiC_scaffold_54_35913192 "0/0" NA "0/1"
## HiC_scaffold_54_35913282 "1|1" "0/0" NA
## HiC_scaffold_54_35913283 "1|1" NA NA
## HiC_scaffold_55_1260491 "0/1" "1/1" "1/1"
## HiC_scaffold_55_3254027 "1/1" NA "1/1"
## HiC_scaffold_55_3281985 "0/0" "0/0" NA
## HiC_scaffold_55_5409544 NA "1/1" "1/1"
## HiC_scaffold_55_5411094 NA "1|1" "1|1"
## HiC_scaffold_55_5411115 NA "1|1" "1/1"
## HiC_scaffold_55_18121799 NA NA "0/0"
## HiC_scaffold_55_19605809 NA "1/1" "0/0"
## HiC_scaffold_55_19605817 "0/0" NA "1|1"
## HiC_scaffold_55_19605821 NA NA "1|1"
## HiC_scaffold_55_20195204 NA "0/0" "0/1"
## HiC_scaffold_55_20886967 "0/0" "0/0" "0/0"
## HiC_scaffold_55_23222937 "1/1" "0/0" "0/0"
## HiC_scaffold_55_23626331 NA "0/0" "0/1"
## HiC_scaffold_55_24539590 NA NA "0/1"
## HiC_scaffold_55_24585939 NA NA "0/0"
## HiC_scaffold_55_34174151 "0/0" "1/1" NA
## HiC_scaffold_56_17874332 "0/0" "1/1" "1/1"
## HiC_scaffold_56_18635259 "0/0" "1|1" "0/1"
## HiC_scaffold_56_23654344 "0/0" "0/0" "0/0"
## HiC_scaffold_56_35850533 "0/0" "0/0" "1|1"
## HiC_scaffold_56_35850539 "0/0" "0/0" "1|1"
## HiC_scaffold_56_40813556 "0/0" "0/0" "1/1"
## HiC_scaffold_56_53211633 "0/0" "0/0" "1/1"
## HiC_scaffold_56_60070829 "0/1" NA "1/1"
## HiC_scaffold_56_73286017 "1|1" NA "0/1"
## HiC_scaffold_56_73829442 NA "0/0" "0|1"
## HiC_scaffold_56_73829443 NA "0/0" "0|1"
## HiC_scaffold_56_76060304 "0/0" "1|1" "0/0"
## HiC_scaffold_57_25306408 "0/1" "1/1" "1/1"
## HiC_scaffold_57_29222385 "1/1" "0/0" "0|1"
## HiC_scaffold_57_29592432 "1/1" NA "0/0"
## HiC_scaffold_57_31472698 "1/1" "0/0" NA
## HiC_scaffold_57_32371742 "0/0" NA "0/1"
## HiC_scaffold_57_36495072 "0/1" "0/0" "0/1"
## HiC_scaffold_57_37286264 "1/1" NA "0/0"
## HiC_scaffold_57_38537415 "1|1" "0/0" "0/0"
## HiC_scaffold_57_45438854 NA "1|1" "2|2"
## HiC_scaffold_57_52856874 "0/0" "0/0" "0/0"
## HiC_scaffold_57_53575355 NA "0/0" "1/1"
## HiC_scaffold_57_55856783 "0/1" "0/1" "1/1"
## HiC_scaffold_58_1362614 "0/0" NA "1/1"
## HiC_scaffold_58_1432845 "1/1" "1/1" "1/1"
## HiC_scaffold_58_1541720 "0/0" NA NA
## HiC_scaffold_58_2777120 "1/1" "0/0" "0/0"
## HiC_scaffold_58_2973169 "1/1" "1/1" "1/1"
## HiC_scaffold_58_3243043 "0/0" NA "0/1"
## HiC_scaffold_58_4035282 "0/0" "0/0" NA
## HiC_scaffold_58_5442157 "1|1" "0/0" NA
## HiC_scaffold_58_8004631 "1/1" NA "0/0"
## HiC_scaffold_58_8058998 NA NA "0/0"
## HiC_scaffold_58_8932837 "1/1" NA "0/0"
## HiC_scaffold_58_14814944 "1/1" "0/0" "0/0"
## HiC_scaffold_58_15639988 "0/1" "0/0" "0/0"
## HiC_scaffold_58_15707198 "1/1" "1/1" "1/1"
## HiC_scaffold_58_15707258 "1/1" "1/1" "1/1"
## HiC_scaffold_58_15710623 "1/1" "1/1" "0/0"
## HiC_scaffold_58_19155063 "0/0" "0/0" "0/0"
## HiC_scaffold_58_20224050 "0/0" "0/0" "1/1"
## HiC_scaffold_58_38475355 "0/0" "1/1" "1/1"
## HiC_scaffold_59_3979055 NA "1/1" "1/1"
## HiC_scaffold_59_5071810 "1|1" "1|1" "0/0"
## HiC_scaffold_59_5349936 "0/0" "0/0" "0/1"
## HiC_scaffold_59_5350114 "0/0" "0/0" "0/1"
## HiC_scaffold_59_7738302 "1/1" "0/0" "0/0"
## HiC_scaffold_59_7738351 "1/1" NA "0/0"
## HiC_scaffold_59_7958561 "0/0" "0/0" "1|1"
## HiC_scaffold_59_9273798 "1/1" "0/0" "0/0"
## HiC_scaffold_59_50928099 "0/0" NA "0/0"
## HiC_scaffold_59_52960060 NA NA "0/0"
## HiC_scaffold_6_10569023 "0/0" "1/1" "0/1"
## HiC_scaffold_6_10711445 "0/1" NA "1/1"
## HiC_scaffold_6_13209200 NA NA "0/1"
## HiC_scaffold_6_13213107 "0/0" "0/0" "0/0"
## HiC_scaffold_6_13311684 "0/0" NA "0/0"
## HiC_scaffold_6_15670783 "0/0" "0|1" "1|1"
## HiC_scaffold_6_19111232 "0/0" "0/0" "1/1"
## HiC_scaffold_6_32805498 "1/1" "1/1" "1/1"
## HiC_scaffold_6_38793174 "0/0" "0/0" "0/1"
## HiC_scaffold_6_41092101 NA "0/0" "0/0"
## HiC_scaffold_6_41342933 NA "0/0" "0/1"
## HiC_scaffold_6_47594508 NA NA "0/0"
## HiC_scaffold_60_70878 NA "1|1" NA
## HiC_scaffold_60_99549 "0/0" "0|1" "0/1"
## HiC_scaffold_60_201823 NA "1/1" "0/1"
## HiC_scaffold_60_712969 NA "1|1" "0/0"
## HiC_scaffold_60_744783 "0/0" "0|1" "0/1"
## HiC_scaffold_60_744788 "0/0" "0|0" "0|1"
## HiC_scaffold_60_22142128 "0/0" "0/0" "0/0"
## HiC_scaffold_60_27599770 "0/1" "0|1" "1/1"
## HiC_scaffold_60_30608878 "1|1" "1|1" "1|1"
## HiC_scaffold_60_32657324 NA "0/0" "0/0"
## HiC_scaffold_60_32672580 NA "0/0" "1/1"
## HiC_scaffold_60_38856893 "0/0" "0/1" "0/0"
## HiC_scaffold_60_39028335 NA NA "1/1"
## HiC_scaffold_60_40296869 NA "1/1" "0/0"
## HiC_scaffold_60_42775723 NA "0/1" "1/1"
## HiC_scaffold_60_44687906 "0/0" NA "1/1"
## HiC_scaffold_60_44804601 "1/1" "0/0" "0/1"
## HiC_scaffold_60_53696867 "0/0" NA NA
## HiC_scaffold_60_53696868 "0/0" NA NA
## HiC_scaffold_60_60651515 "0/0" "1/1" "1|1"
## HiC_scaffold_60_70678462 "1/1" "1/1" "1/1"
## HiC_scaffold_61_2205328 NA "1|1" "0/0"
## HiC_scaffold_61_2491706 "1/1" "1/1" "0/0"
## HiC_scaffold_61_4009916 "0/0" "0/0" "2/2"
## HiC_scaffold_61_4062917 "0/0" "0/0" "2/2"
## HiC_scaffold_61_4122763 "1|1" "1|1" "1|1"
## HiC_scaffold_61_4216461 "1/1" "0/0" "1/1"
## HiC_scaffold_61_4325053 NA "0/0" "0/0"
## HiC_scaffold_61_9004838 NA NA "1|1"
## HiC_scaffold_61_14635083 "0|1" "0/0" "0/0"
## HiC_scaffold_62_1128608 "1/1" NA "1/1"
## HiC_scaffold_62_11335200 "1|2" "0/0" "0|1"
## HiC_scaffold_62_18828476 NA "1/1" "1/1"
## HiC_scaffold_62_21548870 "1|1" "1|1" "1|1"
## HiC_scaffold_62_23103274 NA "0/0" "0/0"
## HiC_scaffold_62_25793456 "0/1" NA "1/1"
## HiC_scaffold_62_25887474 "1/1" "0/0" "0/0"
## HiC_scaffold_62_28516096 "1|1" NA "0/0"
## HiC_scaffold_62_28516099 "1|1" NA "0/0"
## HiC_scaffold_62_28818725 "0|1" "1|1" "1|1"
## HiC_scaffold_62_28818729 "0/0" "0/0" "0/0"
## HiC_scaffold_62_45207353 "0/1" "0/1" "0/1"
## HiC_scaffold_63_3092269 "1/1" "0/1" "1/1"
## HiC_scaffold_63_3977940 "0/1" NA "0/1"
## HiC_scaffold_63_4084937 NA "0/0" "0/0"
## HiC_scaffold_63_4196326 "0/0" "0/0" "1/1"
## HiC_scaffold_63_6262453 "0/1" "0/1" NA
## HiC_scaffold_63_6350204 "1/1" NA "1/1"
## HiC_scaffold_63_6458794 "1|1" NA "0/1"
## HiC_scaffold_64_9162978 "0/0" "0/0" "0/0"
## HiC_scaffold_64_16876561 "0/0" "0/0" "1|1"
## HiC_scaffold_64_17543009 "0/1" "1/1" "0/0"
## HiC_scaffold_64_18925356 "1/1" "0/0" "1/1"
## HiC_scaffold_64_19133050 "1|1" "1|1" "1|1"
## HiC_scaffold_64_19627769 NA "0/0" NA
## HiC_scaffold_64_20477250 "0/0" NA "1/1"
## HiC_scaffold_64_22816677 NA "0/0" "0/1"
## HiC_scaffold_64_22954654 "1|1" NA "0/0"
## HiC_scaffold_64_22954658 "1|1" NA "0/0"
## HiC_scaffold_64_22954682 "1/1" NA "0/0"
## HiC_scaffold_65_6829971 NA "0/0" "0/0"
## HiC_scaffold_65_8071102 NA "1/1" "0/0"
## HiC_scaffold_65_9023979 "0/0" NA "0/1"
## HiC_scaffold_65_9839671 "0/0" NA "0/1"
## HiC_scaffold_65_10404778 "0/0" "0/0" "1/1"
## HiC_scaffold_65_11327791 "1/1" NA "1/1"
## HiC_scaffold_65_11332104 "0/1" "1/1" "1/1"
## HiC_scaffold_65_34823822 "1|1" "1|1" "1|1"
## HiC_scaffold_65_51418017 "1|1" NA "1/1"
## HiC_scaffold_65_54053979 "1|1" "1|1" "0/0"
## HiC_scaffold_65_57110875 "0|1" "0/0" "1|1"
## HiC_scaffold_66_15615363 "0/0" "0/0" "0/0"
## HiC_scaffold_66_15672090 NA NA "0/1"
## HiC_scaffold_66_17903445 NA "0/0" "0/1"
## HiC_scaffold_66_18298629 "0/0" NA "1|1"
## HiC_scaffold_66_19730676 "1|1" "1|1" "1|1"
## HiC_scaffold_66_23688768 NA "1/1" "1/1"
## HiC_scaffold_66_26614535 "1/1" "0/0" "0|2"
## HiC_scaffold_66_27445665 "0/0" NA "1/1"
## HiC_scaffold_66_29457165 "0/1" "0/0" NA
## HiC_scaffold_66_29457180 "0/1" NA NA
## HiC_scaffold_66_30116287 "1|1" "0|1" "1/1"
## HiC_scaffold_66_31603503 NA "0/0" "0/0"
## HiC_scaffold_66_33261460 NA "0/0" "0/0"
## HiC_scaffold_66_34138981 "1/1" "0/0" NA
## HiC_scaffold_66_34139020 "0/0" NA "0/1"
## HiC_scaffold_66_34142862 "0/0" "0/0" "0/0"
## HiC_scaffold_67_1404390 "1/1" "1/1" "0/1"
## HiC_scaffold_67_28493665 "0/0" "0/0" "1|1"
## HiC_scaffold_67_30243885 "1|1" "0/0" NA
## HiC_scaffold_67_31511806 "0/0" NA "1|1"
## HiC_scaffold_67_34638092 "0/1" "0/0" "0/0"
## HiC_scaffold_67_37534720 "0/0" NA "0/0"
## HiC_scaffold_67_39679546 NA NA "0/0"
## HiC_scaffold_67_39854918 NA "1|1" "1|1"
## HiC_scaffold_67_39860738 "0/0" NA "1/1"
## HiC_scaffold_67_40331656 "0/0" NA "1/1"
## HiC_scaffold_67_40824747 "1|1" "1|1" "1|1"
## HiC_scaffold_68_3438132 NA NA NA
## HiC_scaffold_68_3438133 NA NA NA
## HiC_scaffold_68_11206902 NA "0/1" "0/1"
## HiC_scaffold_68_32770607 NA NA "1|1"
## HiC_scaffold_68_34016823 "0/0" "0/0" "0/0"
## HiC_scaffold_68_34020019 "0/1" "0/1" "1/1"
## HiC_scaffold_68_40296057 "1|1" "0/0" "1|1"
## HiC_scaffold_68_40296059 "1|1" "0/0" "1|1"
## HiC_scaffold_68_65001879 NA "1/1" "1/1"
## HiC_scaffold_69_23311147 NA "0/0" "0/0"
## HiC_scaffold_69_27351303 NA "1/1" NA
## HiC_scaffold_69_29437208 "1/1" "1/1" "0/0"
## HiC_scaffold_69_33699381 "1|1" NA "1|1"
## HiC_scaffold_69_40194698 "1/1" "1/1" "1|1"
## HiC_scaffold_69_48273575 "1/1" "0/0" "0/0"
## HiC_scaffold_69_48348026 "0/1" "1|1" "0/1"
## HiC_scaffold_69_48348034 "0/0" "1|1" "0/0"
## HiC_scaffold_69_49563252 "1/1" NA "1/1"
## HiC_scaffold_69_49593952 "1/1" "0/1" "0/0"
## HiC_scaffold_69_49859037 "0/0" "0/0" "0|1"
## HiC_scaffold_69_51271238 NA "0/1" NA
## HiC_scaffold_69_51529836 NA "0/0" "1/1"
## HiC_scaffold_69_57313650 NA "1/1" "1/1"
## HiC_scaffold_69_57359194 NA "1/1" "0/0"
## HiC_scaffold_6951_523650 "1/1" NA "0/0"
## HiC_scaffold_6951_897126 "0/0" NA "0/0"
## HiC_scaffold_6951_1134482 NA "1|1" "0/1"
## HiC_scaffold_6951_2484960 "0/0" "0/0" "1/1"
## HiC_scaffold_6951_3301273 "0/0" "1|1" "0/0"
## HiC_scaffold_6951_3314609 "1/1" NA "0/1"
## HiC_scaffold_6951_3945993 "0/0" "0/0" "0/0"
## HiC_scaffold_6958_218293 "0/0" "0/0" "0|1"
## HiC_scaffold_6958_449143 "0/0" "1/1" NA
## HiC_scaffold_7_351023 "0/0" "1/1" "0/0"
## HiC_scaffold_7_488024 "0/0" "0/0" "0/0"
## HiC_scaffold_7_492663 NA "1/1" "0/1"
## HiC_scaffold_7_693567 NA "0/0" "0/0"
## HiC_scaffold_7_2379128 "0/1" "1/1" "1/1"
## HiC_scaffold_7_3087721 "0/1" NA "1/1"
## HiC_scaffold_7_3394880 "0/0" "0/1" "1/1"
## HiC_scaffold_7_22247106 "0/0" NA "0/1"
## HiC_scaffold_70_4632611 "0/1" "0/0" "1|1"
## HiC_scaffold_70_14042778 "0/0" NA "0/0"
## HiC_scaffold_71_410844 "0/0" "1|1" "0/0"
## HiC_scaffold_71_1753451 NA "0/0" NA
## HiC_scaffold_71_2283682 "1|1" "1|1" "0/1"
## HiC_scaffold_71_3439685 "0/0" "0|0" "0/0"
## HiC_scaffold_71_17850462 NA NA "0/0"
## HiC_scaffold_71_20588314 "1|1" "0/0" "1|1"
## HiC_scaffold_71_25465351 "1|1" "0/0" "1|1"
## HiC_scaffold_71_25465352 "1|1" "0/0" "1|1"
## HiC_scaffold_71_26356062 "1/1" NA "0/1"
## HiC_scaffold_72_11785096 "0/0" "0/0" NA
## HiC_scaffold_72_17285854 "1/1" NA NA
## HiC_scaffold_72_23704999 "0/0" "0/0" "0/0"
## HiC_scaffold_72_24465318 "1|1" "0/0" "0/1"
## HiC_scaffold_72_30457277 "0/1" "0/0" "0/0"
## HiC_scaffold_72_32068649 "0/0" "0/0" "1/1"
## HiC_scaffold_72_35058295 NA NA "1/1"
## HiC_scaffold_72_36024997 NA "1|1" "1|1"
## HiC_scaffold_72_37135067 "1|1" "0/0" "1|1"
## HiC_scaffold_72_38410141 "1/1" NA "1/1"
## HiC_scaffold_72_38448056 "0/0" "1|1" "0/0"
## HiC_scaffold_72_41412511 "0/0" "0/0" "0/0"
## HiC_scaffold_73_2192629 "1|1" "0/0" "1|1"
## HiC_scaffold_73_2920208 "0/0" NA "1|1"
## HiC_scaffold_73_4522493 "1/1" "1|1" "1/1"
## HiC_scaffold_73_4748625 "0/1" NA "0/1"
## HiC_scaffold_73_5839336 "1/1" "0/0" NA
## HiC_scaffold_73_9338582 "1/1" "1/1" "1/1"
## HiC_scaffold_73_27393859 "1|1" "0|1" "0/1"
## HiC_scaffold_74_14235619 "0/0" "0/0" "1/1"
## HiC_scaffold_74_14515598 "1/1" NA "1/1"
## HiC_scaffold_74_15116121 "1|1" "0/0" NA
## HiC_scaffold_74_17233613 NA "0/0" NA
## HiC_scaffold_74_17725340 "1|1" "0/0" "0|1"
## HiC_scaffold_74_18418135 "0/0" "1|1" NA
## HiC_scaffold_74_18418138 "0/0" "1|1" NA
## HiC_scaffold_74_21254425 "1/1" "1/1" "1/1"
## HiC_scaffold_74_22261065 "0/0" "1/1" "0/0"
## HiC_scaffold_74_47132519 NA "1|1" "0/0"
## HiC_scaffold_74_50979096 "0/0" NA "0/1"
## HiC_scaffold_74_51060549 "1/1" "1/1" "1/1"
## HiC_scaffold_74_53256803 "0/0" "0/1" NA
## HiC_scaffold_74_55464169 NA "0/0" "0/1"
## HiC_scaffold_74_55515512 "1/1" "0/1" "1/1"
## HiC_scaffold_74_55999260 NA NA "1|1"
## HiC_scaffold_74_57404902 NA NA NA
## HiC_scaffold_74_58181927 "0/0" "0/0" "1|1"
## HiC_scaffold_74_58198600 "1/1" "1/1" "1/1"
## HiC_scaffold_74_63060195 "0/1" NA NA
## HiC_scaffold_75_5345466 "0/0" "0/0" "0/0"
## HiC_scaffold_75_5346522 NA "0/1" "1/1"
## HiC_scaffold_75_5346535 NA "0/1" "1/1"
## HiC_scaffold_75_9850973 "0/0" NA "0/0"
## HiC_scaffold_76_27149820 "1/1" "0/0" NA
## HiC_scaffold_76_31582908 "1/1" "1/1" "0/0"
## HiC_scaffold_76_31792815 "0/0" "0/0" "1/1"
## HiC_scaffold_76_35352820 NA "1/1" "0/0"
## HiC_scaffold_76_57782171 "0/0" NA "0/0"
## HiC_scaffold_76_59862401 "1|1" "0/0" "1|1"
## HiC_scaffold_76_61095594 NA "0/0" "0/0"
## HiC_scaffold_76_65496128 "0/0" "1/1" "0/1"
## HiC_scaffold_76_68965847 "0/0" "1/1" "0/1"
## HiC_scaffold_76_68966411 "0/1" "1/1" "0/1"
## HiC_scaffold_76_69823482 "0/0" "1/1" "1|1"
## HiC_scaffold_76_73343841 "1/1" NA "0/1"
## HiC_scaffold_77_3598274 "0/0" "0/0" "0/0"
## HiC_scaffold_77_6982137 "0/0" "1/1" "0/0"
## HiC_scaffold_77_11021994 "1/1" NA "0/1"
## HiC_scaffold_77_13608165 "1/1" "0/0" "0/0"
## HiC_scaffold_77_16888594 "0/0" NA "0|1"
## HiC_scaffold_77_16888623 "0/0" "0/0" "0/0"
## HiC_scaffold_77_16889448 "0/0" "0/0" "0/0"
## HiC_scaffold_77_39784685 NA NA "0/1"
## HiC_scaffold_77_44375866 "0/0" "1/1" NA
## HiC_scaffold_77_45385370 "0/0" NA "0/0"
## HiC_scaffold_78_5719919 NA "0/0" "1/1"
## HiC_scaffold_78_11353297 "0/0" "1|1" "0|1"
## HiC_scaffold_78_27316392 "1/1" "1/1" "0/0"
## HiC_scaffold_78_48124809 "0/0" NA NA
## HiC_scaffold_78_48124826 NA NA NA
## HiC_scaffold_78_48126176 "1|1" "0/0" "0/0"
## HiC_scaffold_78_48279096 NA "0/0" NA
## HiC_scaffold_78_48434558 "1|1" "0/0" "1|1"
## HiC_scaffold_78_49759181 NA NA "0/0"
## HiC_scaffold_78_49759192 "0/0" NA "0/0"
## HiC_scaffold_78_49759215 "0/0" NA "0/1"
## HiC_scaffold_78_51364025 "1/1" NA "1/1"
## HiC_scaffold_78_55395445 NA "0/0" "0/0"
## HiC_scaffold_78_59610866 NA "1/1" NA
## HiC_scaffold_78_62136661 "0/1" "1/1" "0/0"
## HiC_scaffold_79_1643780 "0|1" "0/0" "1/1"
## HiC_scaffold_79_2519178 "1/1" NA "1/1"
## HiC_scaffold_79_2858100 "1/1" NA "0/0"
## HiC_scaffold_79_3922454 "1/1" "0/0" "1/1"
## HiC_scaffold_79_4127878 "1/1" "1|1" "1|1"
## HiC_scaffold_79_4543693 "1/1" "1/1" NA
## HiC_scaffold_79_11507678 "1/1" NA "1/1"
## HiC_scaffold_79_12618812 "0/0" "1/1" "1/1"
## HiC_scaffold_79_14185404 "1|1" NA NA
## HiC_scaffold_79_17120237 "0/0" "1/1" "1/1"
## HiC_scaffold_79_17120254 "0/0" "0/1" "1/1"
## HiC_scaffold_79_35551507 "1|1" "0/0" "0/1"
## HiC_scaffold_79_35551543 "1/1" "0/0" "0/1"
## HiC_scaffold_79_38927423 "1|1" NA "0/0"
## HiC_scaffold_79_42623307 "1|1" "1|1" "0/0"
## HiC_scaffold_79_43179786 "0/0" NA "0/0"
## HiC_scaffold_79_43180099 NA NA "0/0"
## HiC_scaffold_79_43828078 "0/0" "1|1" "0/0"
## HiC_scaffold_79_43872513 "0/0" "0/0" "1/1"
## HiC_scaffold_79_44627215 "0/0" NA "1/1"
## HiC_scaffold_79_50772769 "0/0" "0/0" "0/0"
## HiC_scaffold_79_55468575 "1/1" "0/0" "0/0"
## HiC_scaffold_79_55816114 NA NA "0/0"
## HiC_scaffold_79_59915784 NA NA "0/0"
## HiC_scaffold_79_60165298 "0/0" "0/1" "1/1"
## HiC_scaffold_79_60165305 "0/0" NA "0/0"
## HiC_scaffold_79_69145556 "0/0" "0/0" "0/0"
## HiC_scaffold_79_70208305 NA NA "0|1"
## HiC_scaffold_79_73412292 "0/0" NA "0/0"
## HiC_scaffold_79_73416663 NA NA "0|1"
## HiC_scaffold_79_73416688 NA "1/1" "0/0"
## HiC_scaffold_79_76863102 "0/0" NA "0/0"
## HiC_scaffold_79_81279649 "0/0" "1|1" "0/0"
## HiC_scaffold_79_81499990 "1/1" "1/1" "1/1"
## HiC_scaffold_79_82319836 "1|1" NA NA
## HiC_scaffold_79_82319849 "1|1" NA NA
## HiC_scaffold_79_83163707 NA NA "1/1"
## HiC_scaffold_79_86283512 "1/1" "0/0" "0/1"
## HiC_scaffold_79_87123758 NA NA "1|1"
## HiC_scaffold_79_88362889 "0/0" "1/1" "0/0"
## HiC_scaffold_79_88599431 "0/0" NA "0/0"
## HiC_scaffold_79_89322919 "0/0" NA "1/1"
## HiC_scaffold_79_89331918 "0/0" "0/0" NA
## HiC_scaffold_79_91340958 "0/0" "0|1" NA
## HiC_scaffold_8_13649836 "1/1" NA "1/1"
## HiC_scaffold_8_13650752 "1|1" "1|1" "0|1"
## HiC_scaffold_8_23818233 NA "1/1" NA
## HiC_scaffold_8_24123972 "1|1" "0/0" "1|1"
## HiC_scaffold_8_24230791 NA "0/0" "0/1"
## HiC_scaffold_8_24588423 "0/0" "0/0" "0|2"
## HiC_scaffold_8_25348483 "1/1" "0/0" "1/1"
## HiC_scaffold_8_25421933 NA "0/0" "0/0"
## HiC_scaffold_8_25772942 NA NA "0/0"
## HiC_scaffold_8_26289589 NA NA "1|1"
## HiC_scaffold_8_27602740 NA NA "1|1"
## HiC_scaffold_8_28159063 "1/1" NA "1/1"
## HiC_scaffold_8_30829320 "0/0" NA NA
## HiC_scaffold_8_31044084 NA NA "0/0"
## HiC_scaffold_8_31415507 NA NA NA
## HiC_scaffold_8_32594682 "1|1" NA "0/0"
## HiC_scaffold_80_3617847 NA NA "1|1"
## HiC_scaffold_80_5758183 "0/0" "1|1" "1|1"
## HiC_scaffold_80_6760006 "1|1" NA "0|1"
## HiC_scaffold_80_6760037 NA NA "0/0"
## HiC_scaffold_80_7772622 "1/1" "1/1" "1/1"
## HiC_scaffold_80_7919533 "1/1" "1/1" "2|2"
## HiC_scaffold_80_8110052 "0/0" "1|1" "0/1"
## HiC_scaffold_80_8193366 "0/0" "1/1" "1/1"
## HiC_scaffold_80_8625784 "1/1" "1/1" NA
## HiC_scaffold_80_8912846 "0/1" "0/0" "0/1"
## HiC_scaffold_80_9544102 "0/0" "0/0" "0/0"
## HiC_scaffold_80_10770701 "0/1" "0/0" "0/1"
## HiC_scaffold_80_11590146 "0/0" "0/0" "0/1"
## HiC_scaffold_80_16953653 "0/0" "0/1" "0/1"
## HiC_scaffold_80_18938832 NA "0/0" NA
## HiC_scaffold_80_19015946 NA "1/1" "0/0"
## HiC_scaffold_80_19404001 NA NA "1/1"
## HiC_scaffold_80_25346708 "1|1" "0/0" "0/0"
## HiC_scaffold_80_37479851 "1/1" "0/0" "0/0"
## HiC_scaffold_80_37507516 "1/1" "0/0" NA
## HiC_scaffold_81_1187192 "0/0" NA "0/0"
## HiC_scaffold_81_2689826 NA "1|1" NA
## HiC_scaffold_81_2690751 NA "1|1" NA
## HiC_scaffold_81_6614123 "0/0" NA "0/0"
## HiC_scaffold_81_7836855 "1/1" NA "0/1"
## HiC_scaffold_81_10334868 "0/0" "1/1" "1/1"
## HiC_scaffold_81_10458752 "0/0" "1/1" "1/1"
## HiC_scaffold_81_17515538 "1/1" NA "0/1"
## HiC_scaffold_81_40271282 NA NA "0/0"
## HiC_scaffold_81_40271294 "0/0" NA "1/1"
## HiC_scaffold_81_41096427 NA "0/0" "0/0"
## HiC_scaffold_81_41096444 NA "0/0" "0/0"
## HiC_scaffold_81_43820595 "1/1" NA "0/0"
## HiC_scaffold_81_43820732 NA "1|1" "0/0"
## HiC_scaffold_81_43854278 "1/1" "0/0" "0/0"
## HiC_scaffold_81_44804862 "0/0" NA NA
## HiC_scaffold_81_45063428 NA "0/0" "0/1"
## HiC_scaffold_81_45950590 "0/0" NA "0/1"
## HiC_scaffold_81_46714752 NA NA "1|1"
## HiC_scaffold_81_46714759 NA NA "1|1"
## HiC_scaffold_81_47170397 "1|1" "1|1" "1|1"
## HiC_scaffold_81_47628201 NA NA "1|1"
## HiC_scaffold_81_48105216 "0/0" NA "1|1"
## HiC_scaffold_81_48932070 "0/0" "1|1" "0/0"
## HiC_scaffold_81_54050146 "1/1" "1/1" "1/1"
## HiC_scaffold_82_5672063 "0/0" "0/0" "1/1"
## HiC_scaffold_82_8796823 "1|1" NA "0/0"
## HiC_scaffold_82_13450959 "0/0" "1/1" "0/0"
## HiC_scaffold_82_26144442 "0/0" "0/0" "0/1"
## HiC_scaffold_82_26147011 NA NA "1|1"
## HiC_scaffold_82_28907834 NA NA "1|1"
## HiC_scaffold_82_34413793 NA "0|1" NA
## HiC_scaffold_82_34413800 NA "0/0" NA
## HiC_scaffold_82_36173035 NA "0/0" "1/1"
## HiC_scaffold_82_40539273 NA "1/1" "0/0"
## HiC_scaffold_82_41470256 NA "1/1" "1/1"
## HiC_scaffold_83_23993605 "1/1" "0/0" "0/0"
## HiC_scaffold_83_35035961 "1/1" NA "0/0"
## HiC_scaffold_83_43423618 "0/0" "1|1" "0/0"
## HiC_scaffold_83_46920654 "1/1" NA "0/1"
## HiC_scaffold_83_46934197 NA NA "0|1"
## HiC_scaffold_84_356301 "0/0" "1|1" NA
## HiC_scaffold_84_5761817 "0/0" NA "0/1"
## HiC_scaffold_84_5769022 "1|1" "1|1" "0/0"
## HiC_scaffold_84_6288130 "0/0" "0|1" "1/1"
## HiC_scaffold_84_6288141 "1/1" "1/1" "1|1"
## HiC_scaffold_84_6288147 "0/0" "0/1" "1|1"
## HiC_scaffold_84_7069238 "1|1" "0/0" "0/0"
## HiC_scaffold_84_9131309 NA "1/1" "1/1"
## HiC_scaffold_84_10148442 NA NA "1/1"
## HiC_scaffold_84_14659391 "1/1" "1/1" "1/1"
## HiC_scaffold_84_16302752 "1/1" "1/1" "0/1"
## HiC_scaffold_84_18463244 "1/1" NA "1/1"
## HiC_scaffold_84_22909575 "1|1" "1|1" "1|1"
## HiC_scaffold_84_29275266 "0/0" "1/1" "1/1"
## HiC_scaffold_84_31184610 "0|1" NA "1/1"
## HiC_scaffold_84_33093169 NA "0/0" "0/1"
## HiC_scaffold_84_37675180 NA NA "1/1"
## HiC_scaffold_84_39501814 "1/1" "0/0" "0/0"
## HiC_scaffold_84_50169438 "1|1" NA "0/0"
## HiC_scaffold_84_50169445 "1|1" NA "0/0"
## HiC_scaffold_84_51231025 "0/0" "0/0" NA
## HiC_scaffold_85_9792207 "1|1" "0/0" "0/1"
## HiC_scaffold_85_11784233 "0/0" "0/0" "0|1"
## HiC_scaffold_85_11911022 "0/0" "1|1" "0/0"
## HiC_scaffold_85_11911142 NA "0/0" "1/1"
## HiC_scaffold_85_11913828 "1/1" "1/1" "0/0"
## HiC_scaffold_85_11913831 "0/0" "0/0" "1/1"
## HiC_scaffold_85_12353081 "1/1" NA "1/1"
## HiC_scaffold_85_12414551 "2/2" "1/1" "0/0"
## HiC_scaffold_85_13043967 NA "1|1" "1/1"
## HiC_scaffold_85_13221888 NA NA "1/1"
## HiC_scaffold_85_27008863 NA NA NA
## HiC_scaffold_85_28992264 NA "0/0" "0|1"
## HiC_scaffold_85_28992268 NA NA "0/1"
## HiC_scaffold_85_64310850 NA NA "0/0"
## HiC_scaffold_85_65135112 "0/0" NA "0/0"
## HiC_scaffold_85_65563529 "0/0" "0/1" "1/1"
## HiC_scaffold_86_1949664 NA NA "1|1"
## HiC_scaffold_86_5340423 "1/1" "0/0" "1/1"
## HiC_scaffold_86_5483991 NA NA "0/0"
## HiC_scaffold_86_8928469 "0/0" NA "1|1"
## HiC_scaffold_86_23727924 "0/0" "0/0" "1|1"
## HiC_scaffold_86_24825818 NA "1|1" "0|1"
## HiC_scaffold_86_25333718 NA "1/1" "1/1"
## HiC_scaffold_86_29668168 "0/0" "1|1" "0/2"
## HiC_scaffold_86_30914243 "0/0" "1|1" "1|1"
## HiC_scaffold_86_32040320 NA NA "0/0"
## HiC_scaffold_86_32040329 NA NA "0/0"
## HiC_scaffold_86_32125061 "0/0" "1/1" "0/0"
## HiC_scaffold_86_32144758 "0/1" "0/0" "0/0"
## HiC_scaffold_86_32153692 "1/1" "1/1" "0/0"
## HiC_scaffold_86_32534129 NA "1/1" "1/1"
## HiC_scaffold_86_32605768 "1|1" "0/0" "0/0"
## HiC_scaffold_86_36355399 "0/0" "0/0" NA
## HiC_scaffold_86_36357265 "0/0" "1/1" "1/1"
## HiC_scaffold_87_1253643 "0/0" "0/1" "1/1"
## HiC_scaffold_87_2137958 "0/0" "0/1" "1/1"
## HiC_scaffold_87_3980100 NA NA "1/1"
## HiC_scaffold_87_4395923 "0/1" "0/0" "0/0"
## HiC_scaffold_87_5489328 "1|1" NA "1|1"
## HiC_scaffold_87_6300441 "0|1" "0|1" NA
## HiC_scaffold_87_16306904 "1/1" NA "1/1"
## HiC_scaffold_87_44780945 "1|1" "0/0" "0/0"
## HiC_scaffold_88_5584327 "0/1" "0/0" "0/0"
## HiC_scaffold_88_7104630 "0/0" "0/0" NA
## HiC_scaffold_88_7104631 "0/1" "0/0" NA
## HiC_scaffold_88_7104638 "1|1" "1|1" NA
## HiC_scaffold_88_7104639 "1|1" "0/0" NA
## HiC_scaffold_88_7104640 "1|1" "0/0" NA
## HiC_scaffold_88_7479340 "0/0" NA "0/1"
## HiC_scaffold_88_8773607 "0/0" "0/0" "1|1"
## HiC_scaffold_88_9883678 "1|1" NA "1|1"
## HiC_scaffold_88_10878718 NA NA "0/0"
## HiC_scaffold_88_19365116 "0/0" NA "0|1"
## HiC_scaffold_88_20477349 "0/0" "0/0" "0/0"
## HiC_scaffold_88_20557885 "0/0" "1/1" "0/1"
## HiC_scaffold_89_675045 "0/0" NA "0/0"
## HiC_scaffold_89_2815845 "0/0" "0/0" "2|2"
## HiC_scaffold_89_2843940 "0/0" "1/1" "0/0"
## HiC_scaffold_89_3018830 NA NA NA
## HiC_scaffold_89_13745506 "0/0" "0/1" "0/0"
## HiC_scaffold_89_30006907 "0/0" "1/1" "1/1"
## HiC_scaffold_89_36509388 NA "0/0" "1|1"
## HiC_scaffold_89_38703735 "0/0" "0/0" "0/1"
## HiC_scaffold_89_38764895 "1/1" "1/1" "1/1"
## HiC_scaffold_89_42052609 NA "0/0" "0/0"
## HiC_scaffold_89_42054991 NA "0/0" NA
## HiC_scaffold_89_44306958 NA NA "0/0"
## HiC_scaffold_89_44338206 "0/0" NA "0/0"
## HiC_scaffold_89_45298973 NA "0/1" "0/0"
## HiC_scaffold_9_3529921 NA "1/1" "0/0"
## HiC_scaffold_9_5660454 "0/0" NA "0|1"
## HiC_scaffold_9_5660461 "1|1" NA "1|1"
## HiC_scaffold_9_5854070 "1/1" NA "0/1"
## HiC_scaffold_9_6142415 "1|1" NA "0/0"
## HiC_scaffold_9_6142436 "1|1" NA "0/0"
## HiC_scaffold_9_6143781 "1/1" "1/1" NA
## HiC_scaffold_9_6654825 "1/1" "0/0" "1/1"
## HiC_scaffold_9_7094545 "1|1" "0/0" "0|1"
## HiC_scaffold_9_7100208 "0|1" "0/0" "0|1"
## HiC_scaffold_9_7109988 "0/0" "0/0" "0/0"
## HiC_scaffold_9_7111922 "1|1" NA "0/0"
## HiC_scaffold_9_8235781 "0/0" "1/1" "0/0"
## HiC_scaffold_9_8279558 "0/0" NA "1/1"
## HiC_scaffold_9_15679481 "1|1" "0/0" "0/0"
## HiC_scaffold_9_18082611 "0/0" NA "0/0"
## HiC_scaffold_9_18090830 "0/0" NA "0/0"
## HiC_scaffold_9_30240531 "1/1" NA NA
## HiC_scaffold_90_10418696 "0/0" NA "0/0"
## HiC_scaffold_90_11470224 "1/1" NA "0/0"
## HiC_scaffold_90_13593319 "0/0" "1/1" "0/0"
## HiC_scaffold_90_16260161 "0/0" NA "0/0"
## HiC_scaffold_90_22325499 NA NA "0/0"
## HiC_scaffold_90_23574204 "0/0" NA "0/0"
## HiC_scaffold_90_23609908 "0/0" "0/0" "1|1"
## HiC_scaffold_90_23623078 "0/0" "1|1" "0/0"
## HiC_scaffold_90_23626883 NA NA "0/0"
## HiC_scaffold_90_23812663 "1/1" "1/1" "1/1"
## HiC_scaffold_90_25939283 NA "0/0" "0/1"
## HiC_scaffold_90_25985714 "0/0" "0/0" "0/0"
## HiC_scaffold_90_30751272 NA NA "0/0"
## HiC_scaffold_90_31232025 "1|1" "1|1" "1|1"
## HiC_scaffold_90_31245699 "1/1" NA "1/1"
## HiC_scaffold_90_31527975 NA "0/0" "0/0"
## HiC_scaffold_90_31546172 "0/0" "0/0" "0/0"
## HiC_scaffold_90_38511996 "0/0" NA "1|1"
## HiC_scaffold_90_38511999 "1|1" NA "1|1"
## HiC_scaffold_90_38517279 "1/1" "1/1" NA
## HiC_scaffold_90_40624104 "0/0" NA "0/0"
## HiC_scaffold_91_5644765 "1|1" "1|1" NA
## HiC_scaffold_91_5867214 NA "1|1" "0/0"
## HiC_scaffold_91_5867226 NA "1|1" "0/0"
## HiC_scaffold_91_7704263 "0/0" "0/0" "1|1"
## HiC_scaffold_91_7871360 "1/1" NA "0/0"
## HiC_scaffold_91_8538014 NA "1/1" "1/1"
## HiC_scaffold_91_13230485 NA NA "1|1"
## HiC_scaffold_91_28696118 "1/1" "0/0" "1/1"
## HiC_scaffold_91_28696625 NA "1|1" NA
## HiC_scaffold_91_42177482 "0|1" NA "0/0"
## HiC_scaffold_91_46813640 "0/0" "1/1" "0/0"
## HiC_scaffold_92_23783035 "0/0" "0/0" "0/0"
## HiC_scaffold_92_23783036 "0/0" "0/0" "0/0"
## HiC_scaffold_92_24712793 "0/1" NA "0/0"
## HiC_scaffold_92_28698258 "1|1" "1/1" "0|1"
## HiC_scaffold_92_40691582 "0/0" "0/0" "0/0"
## HiC_scaffold_92_43967712 "1/1" "0/0" "1/1"
## HiC_scaffold_92_47147572 NA NA "0|1"
## HiC_scaffold_92_49042714 "0/0" "0/0" NA
## HiC_scaffold_92_49042715 "0/0" "0/0" NA
## HiC_scaffold_92_53634002 "1/1" NA "0/0"
## HiC_scaffold_92_58211868 "0/0" NA "0/1"
## HiC_scaffold_92_60114155 NA "0/0" "0/0"
## HiC_scaffold_92_63603483 "0/1" "1|1" "0/0"
## HiC_scaffold_92_64797225 "0/0" "0/0" "2|2"
## HiC_scaffold_92_68367476 NA "0|1" "0/0"
## HiC_scaffold_93_1912167 "0/0" NA "0/1"
## HiC_scaffold_93_2485978 NA "1/1" NA
## HiC_scaffold_93_3227638 NA "1/1" "1/1"
## HiC_scaffold_93_3227641 NA "0/0" "0/0"
## HiC_scaffold_93_13971208 "1/1" "1/1" "1/1"
## HiC_scaffold_93_13987080 "0/0" "0/0" "0/0"
## HiC_scaffold_93_21125468 NA "1/1" "1/1"
## HiC_scaffold_93_21845293 "1/1" "1/1" NA
## HiC_scaffold_93_21845310 "0/0" "0/0" NA
## HiC_scaffold_93_21846342 NA "0/0" "0/0"
## HiC_scaffold_93_21846356 NA "0/0" "0/1"
## HiC_scaffold_93_22589723 "0/0" "0/0" NA
## HiC_scaffold_93_22619278 "1/1" "1/1" "1/1"
## HiC_scaffold_93_22631258 NA "1|1" "1|1"
## HiC_scaffold_93_22631266 NA "1|1" "1|1"
## HiC_scaffold_94_3110102 "0/0" "1/1" "1/1"
## HiC_scaffold_94_3205919 NA "0/0" NA
## HiC_scaffold_94_9023846 NA NA "0/1"
## HiC_scaffold_94_11572820 NA NA "1/1"
## HiC_scaffold_94_12368532 "1|1" "0/0" "0/1"
## HiC_scaffold_94_42179418 "0/0" "0/0" "0/1"
## HiC_scaffold_94_42179519 "0/0" "1/1" "0/1"
## HiC_scaffold_94_51646206 "2/2" "0/0" "0/1"
## HiC_scaffold_94_52781289 "0/0" NA "0|1"
## HiC_scaffold_94_53790035 "0/1" NA "1/1"
## HiC_scaffold_94_53792738 "0/0" "0/0" "1/1"
## HiC_scaffold_94_56768905 "1|1" "0/0" "0/0"
## HiC_scaffold_946_81276 "1/1" "1/1" "0/1"
## HiC_scaffold_95_3189690 "0/1" "1/1" "0/0"
## HiC_scaffold_95_4397298 "1|1" NA "0|1"
## HiC_scaffold_95_9469157 NA NA "0/0"
## HiC_scaffold_95_10641411 "1/1" "0/0" "1/1"
## HiC_scaffold_95_10949821 "1/1" "0/0" "1/1"
## HiC_scaffold_95_12993394 "0/0" "0/0" "0|1"
## HiC_scaffold_95_15515793 "1|1" "0/0" "1|1"
## HiC_scaffold_95_15608785 NA "0/0" NA
## HiC_scaffold_95_15609137 "1/1" "0/0" "0/0"
## HiC_scaffold_95_16295316 "0/0" "0/0" "1/1"
## HiC_scaffold_95_22656165 "0/0" NA "1|1"
## HiC_scaffold_95_25885727 NA NA "0/1"
## HiC_scaffold_96_10460019 NA "0/0" "1/1"
## HiC_scaffold_96_27155785 "0/0" "1/1" "1/1"
## HiC_scaffold_96_37939434 "0/0" NA "0/1"
## HiC_scaffold_96_51115048 "1/1" NA "1/1"
## HiC_scaffold_96_51116511 "0/0" "1/1" "0/0"
## HiC_scaffold_96_51915040 "0/0" NA "0|1"
## HiC_scaffold_96_52681287 "0/1" "0/0" "1/1"
## HiC_scaffold_96_53276519 "0/1" "0/1" "1/1"
## HiC_scaffold_97_1736926 "0|1" NA "0/0"
## HiC_scaffold_97_1736994 "1|1" NA "0/0"
## HiC_scaffold_97_3863543 "1/1" NA "1/1"
## HiC_scaffold_97_4200445 "0/0" NA "0/1"
## HiC_scaffold_97_4799162 NA NA "0/0"
## HiC_scaffold_97_5027892 "1/1" NA "1/1"
## HiC_scaffold_97_8007933 "1|1" NA "0/0"
## HiC_scaffold_97_17997210 NA NA "0/0"
## HiC_scaffold_97_18604647 NA "1/1" "1/1"
## HiC_scaffold_97_20239636 "0/0" NA "0|1"
## HiC_scaffold_98_15154096 NA NA "0/0"
## HiC_scaffold_98_22342667 "1/1" "0/0" "0/0"
## HiC_scaffold_98_22634293 "1|1" "1|1" "0|1"
## HiC_scaffold_98_22634294 "1|1" "1|1" "0|1"
## HiC_scaffold_98_22721138 "0/0" NA "1|1"
## HiC_scaffold_98_22869378 "0/0" "1/1" "0/0"
## HiC_scaffold_98_24108405 NA "0|1" "0/0"
## HiC_scaffold_98_27359592 NA "1/1" "1/1"
## HiC_scaffold_98_28549834 "1/1" "1/1" "0/0"
## HiC_scaffold_98_28867520 "1|1" NA "1|1"
## HiC_scaffold_98_28867524 "1|1" NA "2|2"
## HiC_scaffold_98_29431717 NA "1|1" NA
## HiC_scaffold_98_29675109 "0/0" "1/1" NA
## HiC_scaffold_99_1163244 "0/0" "1|1" "0/0"
## HiC_scaffold_99_1451611 "0/0" NA "1/1"
## HiC_scaffold_99_2021961 NA NA "0/0"
## HiC_scaffold_99_5134392 "0/0" NA "1/1"
## HiC_scaffold_99_5239109 NA NA "1/1"
## HiC_scaffold_99_6917738 NA "1|1" "1|1"
## HiC_scaffold_99_11221970 "1|1" "1|1" "0/0"
## HiC_scaffold_99_25982503 NA NA "0/1"
## Tank_4_Crab_1 Tank_4_Crab_2 Tank_4_Crab_3
## HiC_scaffold_1_2523394 "0/1" "0/0" NA
## HiC_scaffold_1_2542157 "0/1" "1/1" "0/0"
## HiC_scaffold_1_2647806 "1/1" "1/1" "1/1"
## HiC_scaffold_1_2970226 "0/0" "0/1" "0/0"
## HiC_scaffold_1_3329447 "0/0" "0/0" "0/0"
## HiC_scaffold_1_3795100 "1|1" "0|1" "0|1"
## HiC_scaffold_10_2221345 "0/0" "0/0" "1/1"
## HiC_scaffold_10_2299490 "0/0" NA "1|1"
## HiC_scaffold_10_2565301 NA "1/1" "1/1"
## HiC_scaffold_10_3864355 "0/1" "0/1" "0/0"
## HiC_scaffold_10_4319900 "1|1" NA "1|1"
## HiC_scaffold_10_4319907 "1|1" NA "1|1"
## HiC_scaffold_10_5404579 "0/1" "1/1" "0|1"
## HiC_scaffold_10_5843373 "1/1" "1/1" "1/1"
## HiC_scaffold_100_854947 "0/0" NA "0/0"
## HiC_scaffold_100_1070817 NA "0/0" "0/0"
## HiC_scaffold_100_2002094 "0|2" "0|1" "0|1"
## HiC_scaffold_100_2002097 "0|1" "0|1" "0|1"
## HiC_scaffold_100_2010331 "0/1" "1|1" "1|1"
## HiC_scaffold_100_5186498 "1/1" "1/1" "1/1"
## HiC_scaffold_100_5828477 "0/1" "0/0" "0/0"
## HiC_scaffold_100_6470419 "1|1" "0|1" "0/0"
## HiC_scaffold_100_6739225 "1/1" "1/1" "1/1"
## HiC_scaffold_100_6739258 "1|1" "1|1" "1|1"
## HiC_scaffold_100_6739264 "1|1" "1|1" "1|1"
## HiC_scaffold_100_6907177 "0/0" "0/1" NA
## HiC_scaffold_100_8384481 "0/0" NA "0|1"
## HiC_scaffold_100_8384495 "0/0" NA "0|1"
## HiC_scaffold_100_9451470 "0/1" "0/1" "0/1"
## HiC_scaffold_100_10464574 "0/0" "0/0" "0/0"
## HiC_scaffold_100_11934792 "0|1" "0/0" NA
## HiC_scaffold_100_11980177 "1/1" "1|1" "1|1"
## HiC_scaffold_100_18465760 "0|1" "0/0" "0|1"
## HiC_scaffold_100_18465762 "0|1" "0/0" "0|1"
## HiC_scaffold_100_18466205 "0/2" "0/2" "0/0"
## HiC_scaffold_100_31738115 "0/1" "0/1" "0/0"
## HiC_scaffold_100_44227362 "0/0" "1/1" "0/0"
## HiC_scaffold_101_12808961 "1|1" "0|1" "0/0"
## HiC_scaffold_101_13897149 "1/1" "1/1" "0/0"
## HiC_scaffold_101_18337279 "0/0" "0/0" "1/1"
## HiC_scaffold_101_20800167 "1/1" "1/1" "1/1"
## HiC_scaffold_102_2260041 "0/0" "0/0" "0/0"
## HiC_scaffold_102_8734519 "1|1" "1|1" "1|1"
## HiC_scaffold_102_10233999 "0/0" "1|1" "1|1"
## HiC_scaffold_102_11446042 "0/0" "0/0" "1/1"
## HiC_scaffold_102_15918694 "1|1" "0/0" "1/1"
## HiC_scaffold_102_15935667 "1/1" "0/0" "0/0"
## HiC_scaffold_102_17442643 "1/1" "1/1" NA
## HiC_scaffold_102_17608969 "0/1" "0/1" "0/1"
## HiC_scaffold_102_20180185 "1/1" "0/0" "0/0"
## HiC_scaffold_102_24788723 "0/1" "0/0" "0/0"
## HiC_scaffold_102_25423729 "1|1" "0/1" "1|1"
## HiC_scaffold_102_39755142 "1/1" "0/1" "1/1"
## HiC_scaffold_102_52046978 "0/0" "0/1" "1/1"
## HiC_scaffold_1027_34152 "0/1" "0/0" "0/1"
## HiC_scaffold_103_601715 "1/1" "0/1" "0/1"
## HiC_scaffold_103_2891384 "1/1" "0/0" "0/0"
## HiC_scaffold_103_8191270 "1|1" "0/0" NA
## HiC_scaffold_103_9521272 NA "1/1" "1/1"
## HiC_scaffold_103_14768909 "0/0" "1|1" "1|1"
## HiC_scaffold_103_19312119 "1|1" "1/1" "0|1"
## HiC_scaffold_103_21284866 "0/0" "0/0" "0/0"
## HiC_scaffold_103_31428453 "0|1" "0/0" "0|1"
## HiC_scaffold_103_42567396 "0/0" "0/0" "0/1"
## HiC_scaffold_103_45921571 "0|1" "0|1" "0/0"
## HiC_scaffold_103_45921573 "0|1" "0|1" "0/0"
## HiC_scaffold_103_49592022 "0/1" "0/0" "0/0"
## HiC_scaffold_103_49620132 "1|1" "1|1" "1|1"
## HiC_scaffold_103_50440915 NA "0/0" "0/0"
## HiC_scaffold_103_51944137 "1/1" "1/1" "0/0"
## HiC_scaffold_103_54308582 "0/0" "0/0" "1|1"
## HiC_scaffold_103_54424067 "0/0" "0/0" "1|1"
## HiC_scaffold_103_56932900 "1/1" "1/1" "1/1"
## HiC_scaffold_103_57470264 NA "1|1" "1|1"
## HiC_scaffold_104_7771140 "1/1" "1/1" "1/1"
## HiC_scaffold_104_9103028 "1/1" "0/0" "0/0"
## HiC_scaffold_104_10633168 NA "0/0" "1/1"
## HiC_scaffold_104_18917031 "0/1" "1/1" NA
## HiC_scaffold_104_20851902 "0/0" "0/0" "0/0"
## HiC_scaffold_104_24451803 "0/0" "0/0" "0/1"
## HiC_scaffold_104_28597688 "0/1" "0/1" "0/1"
## HiC_scaffold_104_40927999 "1/1" "1/1" "1/1"
## HiC_scaffold_104_46490074 "0/0" "0/0" "0/0"
## HiC_scaffold_104_49759053 "1/1" "0/0" "0/0"
## HiC_scaffold_104_57267896 "1/1" "1/1" "0/1"
## HiC_scaffold_104_62570010 "1/1" "0/0" "0/0"
## HiC_scaffold_11_32804173 "0/0" "0/0" "0/0"
## HiC_scaffold_11_34516508 NA NA "1/1"
## HiC_scaffold_11_35332996 "1/1" "1/1" "1/1"
## HiC_scaffold_11_35904027 "0/0" "1/1" "0/0"
## HiC_scaffold_11_41539793 "1|1" "1|1" "1|1"
## HiC_scaffold_11_41604080 NA "1|1" NA
## HiC_scaffold_11_42855323 "1/1" "0/0" "0/0"
## HiC_scaffold_11_45339409 "0|1" "0/0" "1/1"
## HiC_scaffold_11_45339410 "0/1" NA "0/0"
## HiC_scaffold_11_47544035 "1/1" NA "1/1"
## HiC_scaffold_12_7515164 "0/0" "0/0" "0/0"
## HiC_scaffold_12_12640100 NA "0/0" "0/0"
## HiC_scaffold_12_12826705 "0/1" "0/0" NA
## HiC_scaffold_12_14899285 "0/1" "0/1" "0/1"
## HiC_scaffold_12_17465672 "1/1" "1/1" "0/0"
## HiC_scaffold_12_22770710 "1|1" "1|1" "0/0"
## HiC_scaffold_12_32318964 "1|1" "1|1" "0/0"
## HiC_scaffold_12_35136373 "0/0" NA "0/0"
## HiC_scaffold_12_40687860 "1|1" "0/0" "1|1"
## HiC_scaffold_13_2938168 "0/1" "1/1" "1/1"
## HiC_scaffold_13_20350974 "0/0" "1/1" "1/1"
## HiC_scaffold_13_27759554 "1/1" "1/1" "1/1"
## HiC_scaffold_13_28146828 "0/0" "0/0" "0/0"
## HiC_scaffold_13_28146830 "0/0" "0/0" "0/0"
## HiC_scaffold_13_28925343 NA NA "1|1"
## HiC_scaffold_13_31913129 NA "1/1" "1/1"
## HiC_scaffold_13_32078924 "0|1" "0/0" "0/0"
## HiC_scaffold_13_33864805 "1/1" "1/1" "1/1"
## HiC_scaffold_13_34892542 "0/0" "1/1" "0/1"
## HiC_scaffold_13_34893103 "1/1" NA "0/0"
## HiC_scaffold_13_35762551 "1|1" "1|1" "0|1"
## HiC_scaffold_13_35881745 "0/0" "1/1" "0/1"
## HiC_scaffold_13_35881749 "0/0" "0/1" "0/1"
## HiC_scaffold_14_3843214 "0/0" "0/0" "0/0"
## HiC_scaffold_14_25884262 "0/1" NA "0|1"
## HiC_scaffold_14_27050415 "1/1" "1/1" "1/1"
## HiC_scaffold_14_27118495 "1/1" "0/1" "1/1"
## HiC_scaffold_14_27277222 "0/0" "0/0" "0/0"
## HiC_scaffold_14_29215814 "1|1" "1|1" "1|1"
## HiC_scaffold_15_2460398 "0|1" "1|1" "0|1"
## HiC_scaffold_15_2462980 "1/1" "0/1" "1/1"
## HiC_scaffold_15_2467289 "1/1" "1/1" "1/1"
## HiC_scaffold_15_5669141 "0/0" "1/1" "1/1"
## HiC_scaffold_15_13700694 "0/0" "0/0" "0/0"
## HiC_scaffold_15_17825275 "0|1" "0|1" "0/0"
## HiC_scaffold_15_19938475 NA "0/1" NA
## HiC_scaffold_15_23865956 NA "1|1" "1|1"
## HiC_scaffold_15_28837774 NA "1/1" "1/1"
## HiC_scaffold_15_28837810 NA "0/1" "1/1"
## HiC_scaffold_15_28837823 "0/0" "0/0" "1/1"
## HiC_scaffold_15_28837835 "0|1" "0|1" "1|1"
## HiC_scaffold_15_28837841 "0|1" "0|1" "1|1"
## HiC_scaffold_15_28837854 "1/1" "0/1" "0/0"
## HiC_scaffold_15_34827832 "0/0" "1/1" "0/0"
## HiC_scaffold_15_34893807 "0/1" "0/1" "0/1"
## HiC_scaffold_15_35327348 "0/1" "0/0" "1/1"
## HiC_scaffold_15_42161112 "1|1" "1|1" NA
## HiC_scaffold_15_42164926 "1|1" "0/0" "0/0"
## HiC_scaffold_15_42164946 "1/1" "0/1" "0/1"
## HiC_scaffold_15_46289572 "0|1" "0/0" "1/1"
## HiC_scaffold_15_50591576 "0/0" "1|1" "1|1"
## HiC_scaffold_15_50759128 "1|1" "1|1" "0/1"
## HiC_scaffold_15_51188336 "1|1" "0/0" "0/0"
## HiC_scaffold_15_54726640 "1/1" "1/1" "1/1"
## HiC_scaffold_15_54788235 "1/1" "0/0" "0/0"
## HiC_scaffold_15_56162375 "0|1" "1/1" "1|1"
## HiC_scaffold_15_61091106 "0/0" "0/1" "0/0"
## HiC_scaffold_15_61464359 "1/1" "1/1" "1/1"
## HiC_scaffold_15_61510386 "0/0" "0/0" "0/0"
## HiC_scaffold_15_62309788 NA "1|1" "1|1"
## HiC_scaffold_15_62309793 NA "1|1" "1|1"
## HiC_scaffold_15_62771254 "0/0" "0/0" "0/0"
## HiC_scaffold_15_63493927 "0/0" "0/0" "1/1"
## HiC_scaffold_15_64997502 "0/0" "0/0" "0/0"
## HiC_scaffold_15_65007865 NA "1|1" "1/1"
## HiC_scaffold_15_65007879 "0/0" "0|1" "0/1"
## HiC_scaffold_15_66038529 "1/1" "1/1" "1/1"
## HiC_scaffold_15_69811281 "0/1" "0/0" NA
## HiC_scaffold_16_14205925 NA "1/1" "0/0"
## HiC_scaffold_16_30404047 "0/0" "0/1" "0/0"
## HiC_scaffold_16_57413288 "0/0" "0/0" "0/0"
## HiC_scaffold_16_63687578 "0/1" "0/0" "0/1"
## HiC_scaffold_16_74138787 "0/0" "0/0" "1/1"
## HiC_scaffold_16_74140106 "0/0" "0/0" "1/1"
## HiC_scaffold_16_76276015 "0/0" "0/1" "1/1"
## HiC_scaffold_17_11390873 "1|1" "0|1" "0/0"
## HiC_scaffold_17_12551128 "1/1" "1/1" "1/1"
## HiC_scaffold_17_16615612 "0/0" "1/1" "0/0"
## HiC_scaffold_17_18838093 "0/0" "0/1" "0/0"
## HiC_scaffold_17_22801072 "1/1" "1/1" "1/1"
## HiC_scaffold_17_23788599 "0/0" "1/1" "0/0"
## HiC_scaffold_17_29383895 NA "0/0" "0/0"
## HiC_scaffold_17_29618771 "0/0" NA "0/0"
## HiC_scaffold_17_29976139 "1/1" "0/1" "0/1"
## HiC_scaffold_17_31107213 "1/1" "1/1" "1/1"
## HiC_scaffold_17_32493792 "0/0" "0/0" "0/0"
## HiC_scaffold_17_33732050 "1/1" "0/0" "0/0"
## HiC_scaffold_17_33801314 "0/0" "0/1" "0/1"
## HiC_scaffold_17_34081889 NA NA "1/1"
## HiC_scaffold_18_227565 "0/0" "0/0" "0/0"
## HiC_scaffold_18_1213486 "1/1" NA "0/1"
## HiC_scaffold_18_1701312 "1|1" "0/0" "0/0"
## HiC_scaffold_18_3506437 "1/1" "0/0" NA
## HiC_scaffold_18_6304978 NA "0/0" "0/0"
## HiC_scaffold_18_6351493 "0/1" "0/1" "0/1"
## HiC_scaffold_18_6358009 "1/1" "0|1" "1/1"
## HiC_scaffold_18_10770701 "1/1" NA "0/0"
## HiC_scaffold_18_13342858 "1/1" "0/0" "0/0"
## HiC_scaffold_18_20045832 "0/0" "0/0" "0/0"
## HiC_scaffold_18_22682683 "1/1" "0/1" "1/1"
## HiC_scaffold_18_26337790 "0/0" "0/0" "1|1"
## HiC_scaffold_18_48929148 NA "0/0" "0/0"
## HiC_scaffold_18_51490626 "0/0" "0/0" "1/1"
## HiC_scaffold_18_53723137 "0/0" "0/0" "0/0"
## HiC_scaffold_18_54496637 "0/1" "0/0" "0/0"
## HiC_scaffold_18_55294388 "1/1" "1/1" "0/0"
## HiC_scaffold_19_279726 "0/0" "1/1" "0/1"
## HiC_scaffold_19_6426572 "0/1" "0/0" "0/1"
## HiC_scaffold_19_6575887 "0/0" "0/0" "0/0"
## HiC_scaffold_19_7755254 "1/1" "1/1" "1|1"
## HiC_scaffold_19_9301421 "1/1" "1|1" "0/0"
## HiC_scaffold_19_9357388 "1|1" NA NA
## HiC_scaffold_19_9778841 "0/0" "1/1" "0/1"
## HiC_scaffold_19_10928976 "0/0" "1|1" NA
## HiC_scaffold_19_10928980 "0/0" "1|1" NA
## HiC_scaffold_19_10928982 NA "0/0" "0/0"
## HiC_scaffold_19_11106347 "0/1" "0/0" "0/0"
## HiC_scaffold_19_11590139 "0/1" "0/1" "1/1"
## HiC_scaffold_19_11665300 "1/1" "1/1" "1/1"
## HiC_scaffold_19_14793640 "0/1" NA "0/1"
## HiC_scaffold_19_22112743 NA "0/0" "0/0"
## HiC_scaffold_19_25473671 "1/1" "1/1" "1/1"
## HiC_scaffold_19_25473692 "0/1" "0/0" "0/0"
## HiC_scaffold_19_28110829 "0/0" "0/0" "0/0"
## HiC_scaffold_19_28465002 "0/0" "1/1" "1/1"
## HiC_scaffold_19_28465167 "0/0" "0|1" "0/0"
## HiC_scaffold_19_30106869 "0/1" "0/0" NA
## HiC_scaffold_19_52538858 "1/1" NA "1/1"
## HiC_scaffold_19_52596196 "0/1" "1|1" NA
## HiC_scaffold_19_53482993 "0/1" "1/1" "1/1"
## HiC_scaffold_19_54312637 "1/1" "1/1" "1/1"
## HiC_scaffold_19_59345841 NA "1|1" "0/0"
## HiC_scaffold_2_3296144 "0/0" "1|1" "1|1"
## HiC_scaffold_2_3418589 "0/1" "0/0" "0/0"
## HiC_scaffold_2_3864060 "0/0" "1/1" NA
## HiC_scaffold_2_4104755 "0/0" "0/0" "0/0"
## HiC_scaffold_2_4104758 "0/0" "0/0" "0/0"
## HiC_scaffold_2_8316721 "0/1" "0/1" NA
## HiC_scaffold_2_9098999 "0/1" "1/1" "1/1"
## HiC_scaffold_2_10457537 "0/0" "1/1" "1/1"
## HiC_scaffold_2_19048125 "1/1" "0/0" "0/0"
## HiC_scaffold_2_21748201 "1/1" "1/1" "1/1"
## HiC_scaffold_2_33187764 NA "0/0" "0/1"
## HiC_scaffold_2_33187770 "0/0" "0/0" "0|1"
## HiC_scaffold_2_33187959 "0/0" "0/1" "0/0"
## HiC_scaffold_2_41603929 "0/1" "0/1" "0/1"
## HiC_scaffold_2_52233191 "0/0" "0/0" "0/0"
## HiC_scaffold_2_52400748 "0/0" "1/1" "0/1"
## HiC_scaffold_2_52403793 "1|1" "1|1" NA
## HiC_scaffold_2_52799130 "1/1" "0/1" "0/1"
## HiC_scaffold_20_10332897 "0/0" "0/0" "0/0"
## HiC_scaffold_20_17198418 NA "1|1" "0/0"
## HiC_scaffold_20_17915398 "0/0" "1|1" "1|1"
## HiC_scaffold_20_18872955 "0/1" "0/1" "0/1"
## HiC_scaffold_20_19055301 "1/1" "1/1" "1/1"
## HiC_scaffold_20_19150094 "1/1" "0/1" "1/1"
## HiC_scaffold_20_20651022 "0/1" "0/1" "0/1"
## HiC_scaffold_20_22651296 NA "0/0" "0/0"
## HiC_scaffold_21_2009156 "0/0" "0/1" "0/1"
## HiC_scaffold_21_2435648 "0/0" "0/0" "0/0"
## HiC_scaffold_21_7164210 "1|1" "0|1" NA
## HiC_scaffold_21_9786512 "0/1" "0/0" "0/0"
## HiC_scaffold_21_12424922 "1/1" "1/1" "1|1"
## HiC_scaffold_21_17966833 "1/1" "1|1" "1/1"
## HiC_scaffold_21_19025429 "0/0" "0/0" "0/0"
## HiC_scaffold_21_20058318 "0/0" "0/0" "0/0"
## HiC_scaffold_21_20562855 "0/0" "1|1" "0/1"
## HiC_scaffold_21_20661860 "0/1" "0/0" "0/0"
## HiC_scaffold_21_20895395 "0/0" "0|1" "1|1"
## HiC_scaffold_21_21158811 "0/0" "1|1" "1|1"
## HiC_scaffold_21_22250857 "0/1" "1/1" "1/1"
## HiC_scaffold_21_22250866 "0/1" "0/1" "0/1"
## HiC_scaffold_21_22257737 NA "0/0" "0/1"
## HiC_scaffold_21_22644667 "0/0" "0/0" "0/0"
## HiC_scaffold_21_22644673 "0/0" "0/0" "0/0"
## HiC_scaffold_21_22666888 "0/0" "1/1" "1/1"
## HiC_scaffold_21_23905416 NA "0/1" "0/0"
## HiC_scaffold_21_23981651 "0/0" "0/1" "0/1"
## HiC_scaffold_21_24287068 "0/0" "1|1" "0/0"
## HiC_scaffold_21_30798434 "0/0" NA NA
## HiC_scaffold_21_35006232 "0/0" "1/1" "0/1"
## HiC_scaffold_21_35779294 "0/0" "0/0" "0/1"
## HiC_scaffold_22_124910 "0/1" "0/1" "0/1"
## HiC_scaffold_22_751023 NA "0|1" "0/1"
## HiC_scaffold_22_1042644 "0/0" "0/0" "0/0"
## HiC_scaffold_22_1044708 NA "0/1" "0/0"
## HiC_scaffold_22_2174911 NA "1/1" "1/1"
## HiC_scaffold_22_3431122 "0/1" "1|1" "1|1"
## HiC_scaffold_22_3446787 "0|1" "0/0" "0/1"
## HiC_scaffold_22_3451756 "1|1" "0/0" "0/0"
## HiC_scaffold_22_3720435 "1/1" "1/1" "1/1"
## HiC_scaffold_22_4065466 "1|1" "0/0" "0/0"
## HiC_scaffold_22_4739889 "0/0" "0/0" "0/0"
## HiC_scaffold_22_4918263 "0/0" "0/0" "0/0"
## HiC_scaffold_22_5750008 "0|0" "0/1" "1/1"
## HiC_scaffold_22_5769942 "1|1" NA "1/1"
## HiC_scaffold_22_28264522 "0/0" "0/1" "0/1"
## HiC_scaffold_22_28265115 "1/1" "1/1" "0/0"
## HiC_scaffold_22_29205851 "1/1" NA "1/1"
## HiC_scaffold_22_29822340 "1/1" "1/1" NA
## HiC_scaffold_22_30797357 "1/1" "1/1" NA
## HiC_scaffold_22_32042610 "0/1" "1|1" NA
## HiC_scaffold_23_11215327 "0/1" "0/0" "0/0"
## HiC_scaffold_23_27081333 "0/0" "0/0" "1/1"
## HiC_scaffold_23_28672255 "0/0" "0/0" "0/0"
## HiC_scaffold_23_29218828 "0/0" "0/1" "0/0"
## HiC_scaffold_23_32528768 NA "0/0" "0/0"
## HiC_scaffold_23_32669383 NA NA "0/0"
## HiC_scaffold_23_33199663 "0/0" "0/1" "0/0"
## HiC_scaffold_23_33245843 "1/1" "1/1" "0/0"
## HiC_scaffold_23_40824545 NA "0/0" "1|1"
## HiC_scaffold_23_41504669 "0/0" "1/1" "0/0"
## HiC_scaffold_24_16622654 "1/1" "1/1" NA
## HiC_scaffold_24_16622681 "1/1" "1/1" "1/1"
## HiC_scaffold_24_19851560 "0/1" "1/1" "1|1"
## HiC_scaffold_24_20590563 "0/1" "0/1" "0/0"
## HiC_scaffold_24_27745754 "0/1" "1/1" "0/1"
## HiC_scaffold_24_28763699 "1|1" "1|1" "1|1"
## HiC_scaffold_24_28763703 "1|1" "1|1" "1|1"
## HiC_scaffold_25_4135969 "0/0" "0/0" "0/0"
## HiC_scaffold_25_4201677 NA "0/0" "0/0"
## HiC_scaffold_25_5872831 "0/0" "0/0" "1/1"
## HiC_scaffold_25_6879627 "1/1" "1/1" "0/0"
## HiC_scaffold_25_8172813 "1/1" "1/1" "1/1"
## HiC_scaffold_25_9969507 "0/1" "0|1" "0/1"
## HiC_scaffold_25_10691336 "0/1" "1/1" "0/0"
## HiC_scaffold_25_21286462 "0/1" "0|1" "1/1"
## HiC_scaffold_26_4086662 "0/0" "0/0" "1/1"
## HiC_scaffold_26_7539671 "0/0" "0/0" "0/0"
## HiC_scaffold_26_8348511 "1/1" "1/1" "1/1"
## HiC_scaffold_26_9043748 NA "0/0" "0/0"
## HiC_scaffold_26_9045655 "0/1" "1/1" "1|1"
## HiC_scaffold_26_11253181 "0/1" "1|1" "1/1"
## HiC_scaffold_26_17828344 "1/1" "0/0" "1/1"
## HiC_scaffold_26_17932520 "1/1" "1/1" "1/1"
## HiC_scaffold_26_17941459 "1/1" "1/1" "0/0"
## HiC_scaffold_26_17960877 "1/1" "1/1" NA
## HiC_scaffold_26_18284041 "0/1" "0/0" "0/1"
## HiC_scaffold_26_18288701 "0|1" "1|1" "1|1"
## HiC_scaffold_26_18294422 "0/1" "0|1" "0|1"
## HiC_scaffold_26_21307365 "0/0" "1|1" "1/1"
## HiC_scaffold_26_22159924 "1/1" "1/1" "1/1"
## HiC_scaffold_26_22161535 "1/1" "1/1" "0|2"
## HiC_scaffold_26_24794176 "1/1" "1/1" NA
## HiC_scaffold_26_28538113 "0|1" "0|1" "0|1"
## HiC_scaffold_26_29031357 "1/1" "1/1" "1/1"
## HiC_scaffold_26_29163462 "0/1" "0/0" NA
## HiC_scaffold_26_42631018 "1|1" "1|1" "1|1"
## HiC_scaffold_26_42634814 NA "0/0" "0/1"
## HiC_scaffold_26_43483190 NA NA "1/1"
## HiC_scaffold_26_49955889 "1/1" NA "1/1"
## HiC_scaffold_26_58342510 "0/0" "1|1" "0/0"
## HiC_scaffold_27_1496120 "1|1" "1|1" NA
## HiC_scaffold_27_1947057 "0/0" "0/0" "0/1"
## HiC_scaffold_27_2359058 "0/1" "0/0" "1|1"
## HiC_scaffold_27_2699645 "1/1" "0/1" "1/1"
## HiC_scaffold_27_4425475 "0/0" "0/0" "1|1"
## HiC_scaffold_27_7539469 "0/0" "0/1" "0/1"
## HiC_scaffold_27_7777122 "0/0" "0/1" "0/0"
## HiC_scaffold_27_16657070 NA NA "0/1"
## HiC_scaffold_27_24539255 "1|1" "0|1" "0/1"
## HiC_scaffold_27_34642359 "1|1" "1|1" "1|1"
## HiC_scaffold_27_34647277 "0/0" "0/0" "0/0"
## HiC_scaffold_27_35380535 "1/1" "1/1" NA
## HiC_scaffold_27_35383230 "0/1" "1|1" "1|1"
## HiC_scaffold_28_21261390 NA NA "1|1"
## HiC_scaffold_28_24490442 "0/0" "0/1" "0/0"
## HiC_scaffold_28_25601927 NA "0/0" NA
## HiC_scaffold_28_31793968 "0/0" "0/0" "0/0"
## HiC_scaffold_28_32126687 "0/0" "0/0" "0/0"
## HiC_scaffold_28_34779518 "1/1" "1/1" "1/1"
## HiC_scaffold_28_36042491 "1/1" "1/1" "1/1"
## HiC_scaffold_28_36692361 "1/1" "1/1" "0|1"
## HiC_scaffold_28_38672993 "0/1" "0/1" NA
## HiC_scaffold_28_39640526 "0|1" "1/1" "1|1"
## HiC_scaffold_28_40169242 NA "1/1" "1/1"
## HiC_scaffold_28_41059640 NA "1|1" "1|1"
## HiC_scaffold_28_42514830 "1/1" "0/1" "1/1"
## HiC_scaffold_28_42601570 "1/1" "0/0" "0/0"
## HiC_scaffold_28_42601585 "0/0" "1/1" "0/0"
## HiC_scaffold_28_43018803 "0/1" "0/0" "1/1"
## HiC_scaffold_28_43036165 "0/0" "0/0" "0/0"
## HiC_scaffold_29_344317 NA "0/1" "1/1"
## HiC_scaffold_29_3811176 "0/1" "1/1" "0/1"
## HiC_scaffold_29_6073993 "0|1" "0|1" "1/1"
## HiC_scaffold_29_6415222 "0/0" "0/0" NA
## HiC_scaffold_29_8224424 "0/1" "1/1" "0/0"
## HiC_scaffold_29_11153624 "0/0" "0/0" "0/0"
## HiC_scaffold_29_11153712 "0/0" "0/0" "0/0"
## HiC_scaffold_29_11167966 NA "0/0" "0/1"
## HiC_scaffold_29_11491468 "0/1" "0/1" "0/0"
## HiC_scaffold_29_12103558 "1/1" "0/0" "0/0"
## HiC_scaffold_29_14279322 "0/1" "0/0" "0/1"
## HiC_scaffold_29_14913907 "0/1" "0/1" "0/1"
## HiC_scaffold_29_16378276 "1/1" "0/0" "1/1"
## HiC_scaffold_29_20635937 "0/0" "0/0" "1/1"
## HiC_scaffold_29_20636787 "1/1" "0/0" "1/1"
## HiC_scaffold_29_22560215 NA NA "1/1"
## HiC_scaffold_29_22561144 "1/1" "1/1" "0/1"
## HiC_scaffold_29_24017849 "0/0" "0/0" "0/0"
## HiC_scaffold_29_31603590 NA "0/1" "0/0"
## HiC_scaffold_3_21670751 "0/1" NA "1/1"
## HiC_scaffold_3_24747014 "1/1" "1/1" "0/1"
## HiC_scaffold_3_27861792 "0/1" "0/0" "0/0"
## HiC_scaffold_3_28057869 "1/1" "1/1" "1/1"
## HiC_scaffold_3_28441436 "0/1" "1/1" "1/1"
## HiC_scaffold_3_28694380 "0/0" "0/0" "0/0"
## HiC_scaffold_3_31361023 "0/0" "0|1" NA
## HiC_scaffold_3_31960572 "0/0" "0/0" "0/0"
## HiC_scaffold_3_32157169 "0/0" "0/1" "1/1"
## HiC_scaffold_3_32159152 NA "0/0" "0/1"
## HiC_scaffold_3_34124237 "0/0" "0/1" "1/1"
## HiC_scaffold_30_14199802 "0/0" NA "0/1"
## HiC_scaffold_30_16052331 "1/1" NA "0/0"
## HiC_scaffold_30_19914075 "1/1" "1/1" "0/1"
## HiC_scaffold_30_20688783 "0/1" "1/1" NA
## HiC_scaffold_30_21446076 "0/0" "0/0" "0/0"
## HiC_scaffold_30_21598563 "0/0" "0/0" "0/0"
## HiC_scaffold_30_22155728 "0/0" "0/0" "0|1"
## HiC_scaffold_31_687411 "0/0" "0/0" NA
## HiC_scaffold_31_3224722 "1/1" "0/0" "0/0"
## HiC_scaffold_31_3574854 "0/0" NA "0/1"
## HiC_scaffold_31_5899551 "1/1" "1/1" "1/1"
## HiC_scaffold_31_5911491 "0/1" "0/0" "0/0"
## HiC_scaffold_31_6297680 NA "0/0" "0/1"
## HiC_scaffold_31_12394016 "1/1" "0/0" "0/0"
## HiC_scaffold_31_12394040 "0/0" "1|1" "1|1"
## HiC_scaffold_31_18612650 "1/1" "0/0" "0/0"
## HiC_scaffold_32_4446859 NA "1/1" "0/1"
## HiC_scaffold_32_5274796 NA "1/1" "0/0"
## HiC_scaffold_32_5275108 "0/1" NA "0/1"
## HiC_scaffold_32_5282358 "0/0" "0/1" "0/0"
## HiC_scaffold_32_5450203 "1|1" "1|1" "1|1"
## HiC_scaffold_32_44200178 "0/0" "0/1" "0/0"
## HiC_scaffold_33_638523 "0/1" "0|1" "0/1"
## HiC_scaffold_33_44489563 "0/1" "0/1" "0/1"
## HiC_scaffold_33_44489988 "1/1" "1/1" "0/0"
## HiC_scaffold_33_47080180 "1/1" "0/1" "0/0"
## HiC_scaffold_33_47495907 "0/0" "0/0" "0/0"
## HiC_scaffold_33_51865876 "1/1" "1/1" "0/1"
## HiC_scaffold_34_1096982 "0/1" "0/0" "0/0"
## HiC_scaffold_34_6091943 "1|1" "1|1" NA
## HiC_scaffold_34_6100160 "1|1" "1|1" "1|1"
## HiC_scaffold_34_24368584 "0/1" "0/1" "1/1"
## HiC_scaffold_35_3233120 "0/1" "0/0" "1/1"
## HiC_scaffold_35_3253574 NA "1/1" "0/1"
## HiC_scaffold_35_5512296 "0/1" "0/0" "0/1"
## HiC_scaffold_35_15114788 "0/1" "0/0" "0/0"
## HiC_scaffold_35_21214090 "0/0" "0/0" "0/0"
## HiC_scaffold_35_21462564 "0/0" "0/1" "1/1"
## HiC_scaffold_35_22746783 NA "0/0" NA
## HiC_scaffold_35_22747085 NA NA "0/0"
## HiC_scaffold_35_23059580 "0/0" "0/0" "1/1"
## HiC_scaffold_35_23158882 "0/0" "1/1" "0/0"
## HiC_scaffold_35_23261143 "1/1" "1/1" "1/1"
## HiC_scaffold_35_24403602 "0/0" NA "0/0"
## HiC_scaffold_35_24403620 "0/0" "1/1" "0/0"
## HiC_scaffold_35_24993986 "0/1" NA "1/1"
## HiC_scaffold_35_24993998 "0|1" "0|1" "1|1"
## HiC_scaffold_36_1538038 "1/1" "1/1" "0/1"
## HiC_scaffold_36_2464728 "1/1" "0/1" "1/1"
## HiC_scaffold_36_5489050 "0/1" "0/0" "0/0"
## HiC_scaffold_36_9673981 "1/1" "0/1" "0/0"
## HiC_scaffold_36_9674127 "1/1" "1/1" "1/1"
## HiC_scaffold_36_9674756 "1/1" "1/1" "1/1"
## HiC_scaffold_36_9676329 NA "1/1" "1/1"
## HiC_scaffold_36_12304516 "1/1" "1/1" "0/1"
## HiC_scaffold_36_12515555 "1|1" "1|1" "0|1"
## HiC_scaffold_36_13092647 "1|1" "1/1" "1|1"
## HiC_scaffold_36_13766994 "1/1" "1/1" "1/1"
## HiC_scaffold_36_14567741 "0/1" "0/0" "0/1"
## HiC_scaffold_36_15530578 "1|1" NA "1|1"
## HiC_scaffold_37_679894 "0/0" "1/1" "1/1"
## HiC_scaffold_37_916693 "0/0" "0/0" "0/0"
## HiC_scaffold_37_928146 "0/0" NA "0/1"
## HiC_scaffold_37_1256768 "0/0" "1|1" "0/0"
## HiC_scaffold_37_1270034 "0/0" "1/1" "1/1"
## HiC_scaffold_37_1770997 "0/0" NA "2/2"
## HiC_scaffold_37_1798298 "0/0" "1/1" "1/1"
## HiC_scaffold_37_2010342 "0/0" "1|1" "0/1"
## HiC_scaffold_37_2141526 "0/0" NA "0/0"
## HiC_scaffold_37_3952190 "0/0" "0/0" "0/0"
## HiC_scaffold_37_3952215 "0/0" "0/0" "0/0"
## HiC_scaffold_37_9915037 "0/0" "0/0" "0/0"
## HiC_scaffold_38_5383430 "0/0" NA "0/0"
## HiC_scaffold_38_5668363 NA "0/0" "0/1"
## HiC_scaffold_38_5879849 NA "0/0" "0/1"
## HiC_scaffold_38_5880155 "0/0" "1/1" "1/1"
## HiC_scaffold_38_10612790 "0/0" "1/1" "0/0"
## HiC_scaffold_38_11940240 "0/0" "1|1" "0/1"
## HiC_scaffold_38_12878826 NA "1|1" "0/0"
## HiC_scaffold_38_12959698 "0/0" "0/0" "0/0"
## HiC_scaffold_38_13087368 "1/1" "0/0" "0/0"
## HiC_scaffold_38_13480648 "1/1" "1|1" "0|1"
## HiC_scaffold_38_13965243 "1/1" "1/1" "1/1"
## HiC_scaffold_38_14089955 "0/0" NA "0/1"
## HiC_scaffold_38_14408072 NA "1|1" "1|1"
## HiC_scaffold_38_14931216 "0/0" "0|1" "0/1"
## HiC_scaffold_38_14978356 "1|1" "1|1" "1|1"
## HiC_scaffold_38_14978367 "1|1" "1|1" "1|1"
## HiC_scaffold_38_15292863 "1/1" "0/0" "0/1"
## HiC_scaffold_38_15306135 "0/1" "1|1" "0/1"
## HiC_scaffold_38_16077506 NA "1|1" "1|1"
## HiC_scaffold_38_16138965 "1/1" "0/1" "0/1"
## HiC_scaffold_38_16226040 "1/1" "1/1" "1/1"
## HiC_scaffold_39_1393769 "0/0" "0/0" "0/0"
## HiC_scaffold_39_2014970 "0/0" "0/0" "1|1"
## HiC_scaffold_39_2014982 "0/0" "0/0" "1|1"
## HiC_scaffold_39_2014985 "0/0" "0/0" "1|1"
## HiC_scaffold_39_2426443 "1|1" NA NA
## HiC_scaffold_39_2485330 "0/0" "0/0" "0/0"
## HiC_scaffold_39_3350506 NA "0/0" "0/0"
## HiC_scaffold_39_5897388 "0/0" "0/0" "0/0"
## HiC_scaffold_39_17631133 "0/0" "0/1" "0/1"
## HiC_scaffold_4_12107187 "0/0" "1/1" "1/1"
## HiC_scaffold_4_18241670 "0/0" "1|1" "1|1"
## HiC_scaffold_4_18241723 "0|1" "1|1" "1|1"
## HiC_scaffold_4_22418566 "1|1" "0/0" "0/0"
## HiC_scaffold_4_27899990 "0/0" "1/1" "0/1"
## HiC_scaffold_4_35575118 "0/1" "0|1" "0|1"
## HiC_scaffold_4_38000967 "0/1" "1/1" "1/1"
## HiC_scaffold_4_50654021 "0/0" NA "0/0"
## HiC_scaffold_40_2243415 "1/1" "1/1" "1/1"
## HiC_scaffold_40_3000572 NA "1/1" "0/1"
## HiC_scaffold_40_3014177 NA "1/1" "0/1"
## HiC_scaffold_40_3027900 "0/0" "0/0" "0/1"
## HiC_scaffold_40_3143834 "1/1" "1/1" NA
## HiC_scaffold_40_3843942 NA "0|1" NA
## HiC_scaffold_40_3847620 "0/0" "0/0" "0/0"
## HiC_scaffold_40_3891007 "1/1" "1/1" "1/1"
## HiC_scaffold_40_3920667 "2/2" "2/2" "2/2"
## HiC_scaffold_40_4177963 "1/1" "1/1" "0/1"
## HiC_scaffold_40_4819107 "0/0" "0/0" "0/0"
## HiC_scaffold_40_4819834 "1|1" "1/1" "1|1"
## HiC_scaffold_40_5788271 NA "1|1" "1|1"
## HiC_scaffold_40_5965269 "1|1" "1|1" "1|1"
## HiC_scaffold_40_6204154 "0/0" "0/1" "1/1"
## HiC_scaffold_40_8387917 "0|1" "0|1" NA
## HiC_scaffold_41_3235384 "0/0" "0/0" "0/0"
## HiC_scaffold_41_3583000 "0/0" NA "0/0"
## HiC_scaffold_41_5334504 "1/1" "1|1" "1/1"
## HiC_scaffold_41_5387631 NA "0|1" "1|1"
## HiC_scaffold_41_6423426 "0/0" "0/1" "0/0"
## HiC_scaffold_41_14359947 "0/0" "0/1" "0/0"
## HiC_scaffold_41_24007593 "0/0" "0/0" "0/0"
## HiC_scaffold_41_26225447 "0/1" NA "1|1"
## HiC_scaffold_41_28626484 "1/1" "1/1" "1/1"
## HiC_scaffold_41_28660620 "0|1" "0/0" "0/0"
## HiC_scaffold_41_31007688 "1/1" "0/0" "0/1"
## HiC_scaffold_42_1131084 "1/1" "1/1" "1/1"
## HiC_scaffold_42_1818523 "0/0" "0/1" NA
## HiC_scaffold_42_2165002 NA "0/0" "0/0"
## HiC_scaffold_42_2711332 "0/0" NA "0/0"
## HiC_scaffold_42_6142699 "0/0" "1/1" "0/1"
## HiC_scaffold_42_6744976 "1/1" NA "1/1"
## HiC_scaffold_42_8066919 "0/1" "0/0" "1|1"
## HiC_scaffold_42_8068292 "0/0" "0|1" "1|1"
## HiC_scaffold_42_12487888 NA "0|1" "1|1"
## HiC_scaffold_42_41366687 "0/0" "1/1" "1/1"
## HiC_scaffold_42_47313337 "0/0" "0/0" "1|1"
## HiC_scaffold_42_47313338 "0/0" "0/0" "1|1"
## HiC_scaffold_42_50784971 "0/0" "0/0" "0/0"
## HiC_scaffold_42_50784977 "0/0" "0/0" "0/0"
## HiC_scaffold_42_50784981 "1/1" "1/1" "1/1"
## HiC_scaffold_42_51916989 "1/1" NA "1/1"
## HiC_scaffold_43_3842003 "0/1" "1/1" NA
## HiC_scaffold_43_14140861 NA "1|1" "1|1"
## HiC_scaffold_43_15053605 "1/1" NA NA
## HiC_scaffold_43_17289945 "0/0" "1|1" "0/1"
## HiC_scaffold_43_29967704 "0/1" "1/1" "1/1"
## HiC_scaffold_43_35745831 NA "1|1" NA
## HiC_scaffold_43_37627949 "0|1" "0|1" "0|1"
## HiC_scaffold_43_37628126 "0/0" NA "0/0"
## HiC_scaffold_43_44017118 "0/0" "0/0" "0/0"
## HiC_scaffold_43_55124138 "0/0" "0/0" "0|1"
## HiC_scaffold_43_60107326 "0|1" "1|1" "0|1"
## HiC_scaffold_43_61359386 "0/0" "0/1" "1/1"
## HiC_scaffold_43_61702593 "0/0" "0/0" "0/0"
## HiC_scaffold_43_61702606 "0/0" "0/0" "0/0"
## HiC_scaffold_43_61702721 "1|1" "1|1" "1|1"
## HiC_scaffold_43_61702738 "0/0" "0/0" "0/0"
## HiC_scaffold_43_62511703 NA NA "0/1"
## HiC_scaffold_43_64069457 "1/1" "0/0" "0/1"
## HiC_scaffold_43_64577269 "1/1" "1/1" "1/1"
## HiC_scaffold_44_1920144 "1|1" "0/1" "0/0"
## HiC_scaffold_44_2148035 "0/1" NA NA
## HiC_scaffold_44_2568167 NA "1/1" "1/1"
## HiC_scaffold_45_4180070 "0/0" "0/1" NA
## HiC_scaffold_45_4797754 "2/2" "0/0" "0/0"
## HiC_scaffold_45_5911123 "0/1" "0/0" "0/0"
## HiC_scaffold_45_6958990 "0/0" "1/1" "0/0"
## HiC_scaffold_45_8516216 NA "1|1" "1|1"
## HiC_scaffold_45_10191213 NA "1/1" "1/1"
## HiC_scaffold_45_12005885 "0/1" "0/0" "0/0"
## HiC_scaffold_45_12006766 "0/0" "0/0" "0/1"
## HiC_scaffold_45_24736172 "0/1" "0/0" "1/1"
## HiC_scaffold_45_24739830 "0/0" "0/1" "1|1"
## HiC_scaffold_46_9691567 "0|1" "0/0" "0/1"
## HiC_scaffold_46_17380257 "1/1" "0/0" "1/1"
## HiC_scaffold_46_18387147 "0/0" NA "0/0"
## HiC_scaffold_46_37092355 "0/0" NA "0/1"
## HiC_scaffold_46_39183624 "0/0" "1/1" "0/0"
## HiC_scaffold_46_39390547 "1|1" "1|1" NA
## HiC_scaffold_46_42964941 "0/0" "1|1" "1|1"
## HiC_scaffold_46_42986653 "0/0" "1/1" "1/1"
## HiC_scaffold_46_52074364 "1|1" "1|1" "1|1"
## HiC_scaffold_46_54255667 "1/1" "1/1" "1/1"
## HiC_scaffold_47_3750532 "0/0" "0/0" "0/0"
## HiC_scaffold_47_3751345 "1|1" "1/1" "1/1"
## HiC_scaffold_47_15400639 "0|1" "1|1" "1|1"
## HiC_scaffold_47_24072414 "1/1" "1/1" "0/0"
## HiC_scaffold_47_25273825 "1|1" "1|1" "0/0"
## HiC_scaffold_48_8752752 NA NA NA
## HiC_scaffold_48_10765920 "0/0" "0/0" "0/1"
## HiC_scaffold_48_16077918 "1|1" "1|1" "0|1"
## HiC_scaffold_48_16077940 "1|1" "1|1" "0|1"
## HiC_scaffold_48_16411609 "1/1" "1/1" "1/1"
## HiC_scaffold_48_19972580 "0/1" "0/0" "0/1"
## HiC_scaffold_48_23493079 "0/0" "0/0" "0/0"
## HiC_scaffold_48_23597210 "0/0" "0/0" "0/0"
## HiC_scaffold_48_24478493 "0/0" "0/0" "0/0"
## HiC_scaffold_48_24881148 "1/1" "0/1" "1/1"
## HiC_scaffold_48_25865723 "1/1" "1/1" "1/1"
## HiC_scaffold_48_25984068 "0/0" "0/0" "0/0"
## HiC_scaffold_48_25989079 "0/0" "0/1" "0/1"
## HiC_scaffold_48_30601375 "0/0" NA "0/0"
## HiC_scaffold_48_31662115 "1/1" "1/1" "0/0"
## HiC_scaffold_48_41971562 "1/1" "0/0" "1/1"
## HiC_scaffold_49_3392801 "0/0" "0/0" "0/0"
## HiC_scaffold_49_6101692 "1/1" "1/1" "1/1"
## HiC_scaffold_49_7996315 "0/1" "0/1" "1/1"
## HiC_scaffold_49_9470474 "1/1" "1/1" "1/1"
## HiC_scaffold_49_9886007 "1/1" "0/0" "0/1"
## HiC_scaffold_49_12592113 "0/0" "0/1" NA
## HiC_scaffold_49_12741575 "1/1" "1/1" "0/0"
## HiC_scaffold_49_15135019 "0/1" "0/0" "0/1"
## HiC_scaffold_49_25906219 NA "1|1" "1|1"
## HiC_scaffold_49_26614199 "0/0" "0/0" "0/0"
## HiC_scaffold_49_26655554 "0/0" NA "1/1"
## HiC_scaffold_49_37568341 "0/0" "0/0" "0/0"
## HiC_scaffold_49_37568353 "0/0" "0/0" "0/0"
## HiC_scaffold_49_40002255 "0/0" "0/0" "0/0"
## HiC_scaffold_49_40003229 NA "0/0" "0/1"
## HiC_scaffold_49_42966376 "0/1" "1/1" "0/0"
## HiC_scaffold_5_801252 "1/1" "0/1" "0/0"
## HiC_scaffold_5_1446603 "0|1" "0|1" "0/0"
## HiC_scaffold_5_1446611 "0|1" "0|1" "0/0"
## HiC_scaffold_5_1530759 "0/0" "0|1" "0/1"
## HiC_scaffold_5_1539275 "0/0" "2|2" "0/0"
## HiC_scaffold_5_1789576 NA "0/0" "0/0"
## HiC_scaffold_5_1808197 "0/0" "0/1" "1/1"
## HiC_scaffold_5_1808204 "1/1" "0/1" "0/0"
## HiC_scaffold_5_1943895 "1|1" NA "0/1"
## HiC_scaffold_5_1944469 "1/1" "0/1" "0|1"
## HiC_scaffold_5_2857283 "1/1" "0/1" "1/1"
## HiC_scaffold_5_4061378 "1/1" "0/0" "0/0"
## HiC_scaffold_5_4340647 "0/0" "1|1" "1|1"
## HiC_scaffold_5_4435246 "0/0" "1/1" "0/0"
## HiC_scaffold_5_8868783 NA "1/1" "1/1"
## HiC_scaffold_50_4315969 NA "0/1" "1/1"
## HiC_scaffold_50_11652296 NA NA "1/1"
## HiC_scaffold_50_11657309 "0/1" "0/0" "0/0"
## HiC_scaffold_50_15521027 "0/0" "0/0" "0/0"
## HiC_scaffold_50_21050962 "0/0" "0/0" "0/0"
## HiC_scaffold_50_23686202 "1/1" "0/0" "1/1"
## HiC_scaffold_50_27393462 NA "0/0" "0/0"
## HiC_scaffold_50_42586883 "0/0" NA "0/0"
## HiC_scaffold_50_45087211 "1/1" "1/1" NA
## HiC_scaffold_50_49796550 NA "1/1" "1/1"
## HiC_scaffold_50_54383367 "0/0" "0/1" NA
## HiC_scaffold_50_63318678 "0/0" "0/1" "0/0"
## HiC_scaffold_51_3521000 "1/1" "0/0" "0/0"
## HiC_scaffold_51_4681905 "1/1" "1/1" "0/1"
## HiC_scaffold_51_6305599 "0/1" "0/1" "0/0"
## HiC_scaffold_51_8530818 "1|1" "0/1" "1|1"
## HiC_scaffold_51_11653312 "1/1" "0/0" "0/1"
## HiC_scaffold_51_13138547 "1|1" "1|1" NA
## HiC_scaffold_51_14457091 "0/0" "0/0" "0/0"
## HiC_scaffold_51_15512668 NA NA "1/1"
## HiC_scaffold_51_17816346 "1/1" "0/1" "1/1"
## HiC_scaffold_51_19997934 "0|1" "1|1" "1|1"
## HiC_scaffold_51_19997936 "0|1" "1|1" "1|1"
## HiC_scaffold_51_20870773 "0/0" "0/1" "0/0"
## HiC_scaffold_51_26660104 NA "0|1" "1|1"
## HiC_scaffold_51_40727521 "1|1" "0/1" "1|1"
## HiC_scaffold_51_40892841 "0/1" "0/1" "0/0"
## HiC_scaffold_51_41717519 "0/1" "0/1" "0/1"
## HiC_scaffold_51_42547638 "1/1" "1/1" "1/1"
## HiC_scaffold_52_3335804 "0/0" "0/0" "0/0"
## HiC_scaffold_52_4149130 "0/1" "0/1" "0/0"
## HiC_scaffold_52_6893679 "1|1" "1|1" "1|1"
## HiC_scaffold_52_13155416 NA "1/1" "0/1"
## HiC_scaffold_52_13155437 NA "1|1" "0|1"
## HiC_scaffold_52_13155442 NA "1|1" "0|1"
## HiC_scaffold_52_14885688 "0|1" "0/0" "1|1"
## HiC_scaffold_52_14895078 "0/0" "1/1" "0/0"
## HiC_scaffold_52_15141791 "1/1" "1/1" "0/0"
## HiC_scaffold_52_15743051 "0/0" "0/0" NA
## HiC_scaffold_52_15760201 "0/1" "0/1" "0/0"
## HiC_scaffold_52_15834589 "0/0" "0/0" "0/0"
## HiC_scaffold_52_15841769 "0/0" "1/1" "1/1"
## HiC_scaffold_52_15862421 "1|1" "1|1" "1|1"
## HiC_scaffold_52_15970970 "0/0" "0/0" "1|1"
## HiC_scaffold_52_16275237 NA "0/0" "0/1"
## HiC_scaffold_52_16275240 NA "1|1" "0/0"
## HiC_scaffold_52_16275290 NA "1|1" "0/0"
## HiC_scaffold_52_16524164 "1|1" "1|1" "1|1"
## HiC_scaffold_52_16524572 "1/1" "1/1" "1/1"
## HiC_scaffold_52_16525647 "1/1" "1/1" "0/0"
## HiC_scaffold_52_16637047 NA "0/1" NA
## HiC_scaffold_52_17202127 "0/1" "1|1" "1|1"
## HiC_scaffold_52_17207724 "1/1" NA "1/1"
## HiC_scaffold_52_17508820 "0/0" "0/1" "1|1"
## HiC_scaffold_52_17547593 "0/0" "0/0" "0/0"
## HiC_scaffold_52_17551239 "1/1" "1/1" "0/0"
## HiC_scaffold_52_17560696 "0/0" "0/0" "1|1"
## HiC_scaffold_52_17560699 "0/0" "0/0" "1|1"
## HiC_scaffold_52_17741250 "0/0" "0/1" "0/0"
## HiC_scaffold_52_17742260 "0/0" "0/0" "0/0"
## HiC_scaffold_52_18340578 NA "0/0" "0/0"
## HiC_scaffold_52_18415911 "1/1" "1/1" "1|1"
## HiC_scaffold_52_22189517 "1/1" "0/1" "0/0"
## HiC_scaffold_52_22526592 "0/0" "0/0" "0/1"
## HiC_scaffold_52_26393471 "1/1" "0/0" "0/1"
## HiC_scaffold_52_26799380 NA "0/1" "0/0"
## HiC_scaffold_52_31871931 "0/0" "1/1" "1/1"
## HiC_scaffold_52_31874283 "1/1" "1/1" "1/1"
## HiC_scaffold_52_31874287 NA "0/0" "0/0"
## HiC_scaffold_52_32161053 "1|1" "1|1" "1|1"
## HiC_scaffold_52_33165557 "1/1" "1/1" "0/0"
## HiC_scaffold_52_33897620 "1/1" "0/0" "0/1"
## HiC_scaffold_52_34763156 NA "0/1" "0|1"
## HiC_scaffold_52_34763171 "0/0" "0/1" "0/1"
## HiC_scaffold_52_35174755 "0/1" "0/0" NA
## HiC_scaffold_52_35608453 "1/1" "0/1" "0/1"
## HiC_scaffold_52_35608470 "1|1" "1|1" "1|1"
## HiC_scaffold_52_39464728 NA "1|1" "1|1"
## HiC_scaffold_52_42141354 NA NA "0/1"
## HiC_scaffold_52_44675725 "1/1" "1/1" "1/1"
## HiC_scaffold_52_49935920 "1/1" "0/0" "0|1"
## HiC_scaffold_53_21789524 "0/0" "0/0" "0/0"
## HiC_scaffold_53_25168042 "1/1" "1/1" "1/1"
## HiC_scaffold_53_26398989 "0/0" "0|1" "0|1"
## HiC_scaffold_53_26398992 "0/0" "0|1" "0|1"
## HiC_scaffold_53_26398994 "0/0" "0|1" "0|1"
## HiC_scaffold_53_26549665 "1/1" "1/1" NA
## HiC_scaffold_53_29227676 "0|1" "0|1" "0/0"
## HiC_scaffold_53_31250349 "1/1" "1/1" "1/1"
## HiC_scaffold_54_530581 "0|1" "1|1" "1|1"
## HiC_scaffold_54_794095 "1|1" "1|1" "1|1"
## HiC_scaffold_54_1171109 "0/0" "0/0" "0/0"
## HiC_scaffold_54_1378956 "0/1" "0/0" "0/0"
## HiC_scaffold_54_1380539 "0/1" "1/1" "1/1"
## HiC_scaffold_54_3045015 "1/1" "1/1" "1/1"
## HiC_scaffold_54_3185987 "0/1" "0/1" "0/0"
## HiC_scaffold_54_4401098 "0/0" "0|1" "0|1"
## HiC_scaffold_54_5595903 "0/1" "1/1" NA
## HiC_scaffold_54_5595921 "0/0" "0/1" NA
## HiC_scaffold_54_5595928 "0/0" "0/0" NA
## HiC_scaffold_54_5595949 "0/0" "0/0" NA
## HiC_scaffold_54_6649662 "0/0" "0/0" "0/0"
## HiC_scaffold_54_8036734 "0/0" "0/1" NA
## HiC_scaffold_54_9206614 "0/0" "0/0" "0/0"
## HiC_scaffold_54_35913192 "1/1" "0/1" "0/1"
## HiC_scaffold_54_35913282 "0/0" "0/0" "0|1"
## HiC_scaffold_54_35913283 "0/0" "0/0" "0/1"
## HiC_scaffold_55_1260491 "1/1" "1/1" "1/1"
## HiC_scaffold_55_3254027 "1/1" NA "1/1"
## HiC_scaffold_55_3281985 "0/0" "1|1" "1|1"
## HiC_scaffold_55_5409544 "1/1" "1/1" "1/1"
## HiC_scaffold_55_5411094 "1|1" "1|1" "1|1"
## HiC_scaffold_55_5411115 "1|1" "1/1" "1|1"
## HiC_scaffold_55_18121799 "1/1" "1/1" "1/1"
## HiC_scaffold_55_19605809 "0/1" "1|1" "0/1"
## HiC_scaffold_55_19605817 "1|1" "1|1" "0/0"
## HiC_scaffold_55_19605821 "1|1" "1|1" "1/1"
## HiC_scaffold_55_20195204 "0/1" "0/1" NA
## HiC_scaffold_55_20886967 "0/0" "0/0" "0/1"
## HiC_scaffold_55_23222937 NA "0/1" "0/1"
## HiC_scaffold_55_23626331 "1/1" "0/1" "1/1"
## HiC_scaffold_55_24539590 NA "0/0" "1/1"
## HiC_scaffold_55_24585939 "1/1" "0/0" "0/1"
## HiC_scaffold_55_34174151 "1/1" "1/1" "1/1"
## HiC_scaffold_56_17874332 "0/0" "0/1" "0/0"
## HiC_scaffold_56_18635259 "0/0" "0/0" "0/0"
## HiC_scaffold_56_23654344 "1/1" "0/0" NA
## HiC_scaffold_56_35850533 "0/0" "0/0" "1/1"
## HiC_scaffold_56_35850539 "0/0" "0/0" "0/0"
## HiC_scaffold_56_40813556 "0/0" "0/0" "0/0"
## HiC_scaffold_56_53211633 "0/0" "0/1" "0|1"
## HiC_scaffold_56_60070829 "1/1" "1/1" "1/1"
## HiC_scaffold_56_73286017 "1/1" "0/1" "0/0"
## HiC_scaffold_56_73829442 "0/0" "0/0" "0/0"
## HiC_scaffold_56_73829443 "0/0" "0/0" "0/0"
## HiC_scaffold_56_76060304 "1|1" "0/0" "0/0"
## HiC_scaffold_57_25306408 NA "0/0" "0/0"
## HiC_scaffold_57_29222385 NA "0|1" NA
## HiC_scaffold_57_29592432 "0/0" "0/0" "0/0"
## HiC_scaffold_57_31472698 "0/0" NA "0/1"
## HiC_scaffold_57_32371742 "0/0" "0/0" "1|1"
## HiC_scaffold_57_36495072 "0/0" "0/0" "0/0"
## HiC_scaffold_57_37286264 NA "1/1" "0/0"
## HiC_scaffold_57_38537415 NA "1|1" "0/1"
## HiC_scaffold_57_45438854 "2|2" "1|1" "1|2"
## HiC_scaffold_57_52856874 "1/1" "1/1" "0/0"
## HiC_scaffold_57_53575355 "0/0" NA "0/0"
## HiC_scaffold_57_55856783 "1/1" "1/1" NA
## HiC_scaffold_58_1362614 "0/0" "0/1" "0/0"
## HiC_scaffold_58_1432845 "1/1" NA "1/1"
## HiC_scaffold_58_1541720 NA "0/0" "0/0"
## HiC_scaffold_58_2777120 "1/1" "0/1" "1/1"
## HiC_scaffold_58_2973169 "1/1" "1/1" "1/1"
## HiC_scaffold_58_3243043 "0/0" NA "0/0"
## HiC_scaffold_58_4035282 NA "1/1" "1/1"
## HiC_scaffold_58_5442157 "1|1" "0/0" "0/1"
## HiC_scaffold_58_8004631 "1/1" "1/1" "1|1"
## HiC_scaffold_58_8058998 NA NA "0/0"
## HiC_scaffold_58_8932837 "0/0" "0/1" "0/1"
## HiC_scaffold_58_14814944 "0/0" NA "1/1"
## HiC_scaffold_58_15639988 "0/0" "0/1" "0/1"
## HiC_scaffold_58_15707198 "0/0" "1/1" "1/1"
## HiC_scaffold_58_15707258 NA "1/1" "1/1"
## HiC_scaffold_58_15710623 NA "0/0" "1/1"
## HiC_scaffold_58_19155063 "1|1" "0/0" "0/1"
## HiC_scaffold_58_20224050 "1/1" NA "0|1"
## HiC_scaffold_58_38475355 "1/1" "1/1" "1/1"
## HiC_scaffold_59_3979055 "0/0" "0/0" "0/0"
## HiC_scaffold_59_5071810 "1|1" NA NA
## HiC_scaffold_59_5349936 "1/1" "0/0" "0/0"
## HiC_scaffold_59_5350114 "0/0" "0/1" "0/0"
## HiC_scaffold_59_7738302 "0/1" "1/1" "1/1"
## HiC_scaffold_59_7738351 "0/0" "1/1" NA
## HiC_scaffold_59_7958561 "0/0" NA "0/0"
## HiC_scaffold_59_9273798 "1/1" "0/0" "0/1"
## HiC_scaffold_59_50928099 "1/1" "1/1" "1/1"
## HiC_scaffold_59_52960060 "1|1" "1|1" "1|1"
## HiC_scaffold_6_10569023 "1/1" "0/0" "1/1"
## HiC_scaffold_6_10711445 "1/1" "0/0" "1/1"
## HiC_scaffold_6_13209200 "0/0" "0/1" NA
## HiC_scaffold_6_13213107 "0/0" "0/1" "1/1"
## HiC_scaffold_6_13311684 "1|1" "1/1" "1/1"
## HiC_scaffold_6_15670783 "0/1" "0|1" NA
## HiC_scaffold_6_19111232 "0/1" "1/1" "0/0"
## HiC_scaffold_6_32805498 "1/1" "0/0" NA
## HiC_scaffold_6_38793174 "0/0" "0/1" "1|1"
## HiC_scaffold_6_41092101 "0/1" "0/1" "1|1"
## HiC_scaffold_6_41342933 "0/1" "0/0" "1/1"
## HiC_scaffold_6_47594508 "0/0" "0/0" "0/0"
## HiC_scaffold_60_70878 "0|1" "0|1" "1|1"
## HiC_scaffold_60_99549 "1|1" "0/1" "0|1"
## HiC_scaffold_60_201823 "1/1" "1/1" "1/1"
## HiC_scaffold_60_712969 "1|1" "1|1" "1|1"
## HiC_scaffold_60_744783 "0|0" "0/0" "0/0"
## HiC_scaffold_60_744788 "1|1" "0/1" "0/0"
## HiC_scaffold_60_22142128 "0/0" "0/0" "0/0"
## HiC_scaffold_60_27599770 "1/1" "1/1" NA
## HiC_scaffold_60_30608878 "1|1" "1|1" "1|1"
## HiC_scaffold_60_32657324 "1/1" "1/1" "0/0"
## HiC_scaffold_60_32672580 "1/1" "1/1" "1/1"
## HiC_scaffold_60_38856893 "0/0" "0/0" "0/0"
## HiC_scaffold_60_39028335 NA "1/1" "1/1"
## HiC_scaffold_60_40296869 "0/1" NA "0/0"
## HiC_scaffold_60_42775723 "1/1" "1/1" "1/1"
## HiC_scaffold_60_44687906 "0/0" "0/0" "0/0"
## HiC_scaffold_60_44804601 "0/1" "0/1" "0/0"
## HiC_scaffold_60_53696867 "0|1" "0|1" "1|1"
## HiC_scaffold_60_53696868 "0|1" "0|1" "1|1"
## HiC_scaffold_60_60651515 "0/1" NA "0/1"
## HiC_scaffold_60_70678462 NA "0/1" "1/1"
## HiC_scaffold_61_2205328 "0/0" "0/0" "0/0"
## HiC_scaffold_61_2491706 "1|1" "1/1" "1/1"
## HiC_scaffold_61_4009916 "0/0" "0/0" "2/2"
## HiC_scaffold_61_4062917 "0/0" "0/0" "0/0"
## HiC_scaffold_61_4122763 "1|1" "1|1" "1|1"
## HiC_scaffold_61_4216461 "1/1" "1/1" "1/1"
## HiC_scaffold_61_4325053 "0/1" "0/1" "0/0"
## HiC_scaffold_61_9004838 NA "0/0" "1|1"
## HiC_scaffold_61_14635083 "0/1" "0/1" "0/0"
## HiC_scaffold_62_1128608 NA "0|1" "1/1"
## HiC_scaffold_62_11335200 "0/0" "0/0" "2|2"
## HiC_scaffold_62_18828476 "0/1" "0/1" "1/1"
## HiC_scaffold_62_21548870 "0|1" "0/1" "1|1"
## HiC_scaffold_62_23103274 "0/1" "1/1" "1/1"
## HiC_scaffold_62_25793456 "0/0" "0/0" "0/0"
## HiC_scaffold_62_25887474 "0/1" "0/0" "0/1"
## HiC_scaffold_62_28516096 "0/0" "0/0" "1|1"
## HiC_scaffold_62_28516099 "0/0" "0/0" "1|1"
## HiC_scaffold_62_28818725 "0/0" "1|1" "1|1"
## HiC_scaffold_62_28818729 "1/1" "0/0" "0/0"
## HiC_scaffold_62_45207353 "1/1" "1/1" "1/1"
## HiC_scaffold_63_3092269 "1/1" "1/1" "1/1"
## HiC_scaffold_63_3977940 "1/1" "0/1" "0/1"
## HiC_scaffold_63_4084937 "0/0" "0/0" "0/0"
## HiC_scaffold_63_4196326 "1/1" "0/1" "0/0"
## HiC_scaffold_63_6262453 "0/0" "0/0" "0/1"
## HiC_scaffold_63_6350204 "1/1" "0/1" "0/0"
## HiC_scaffold_63_6458794 "0|1" NA "0|1"
## HiC_scaffold_64_9162978 "0/0" "0/0" "0/0"
## HiC_scaffold_64_16876561 "1|1" "0|1" NA
## HiC_scaffold_64_17543009 "0/0" "0/0" NA
## HiC_scaffold_64_18925356 "1/1" "0/0" "0/0"
## HiC_scaffold_64_19133050 "0/0" "0/0" "0/0"
## HiC_scaffold_64_19627769 "0/0" NA "1|1"
## HiC_scaffold_64_20477250 NA "0/0" "0/0"
## HiC_scaffold_64_22816677 "0/0" "0/0" "0/0"
## HiC_scaffold_64_22954654 "1|1" "1|1" "1|1"
## HiC_scaffold_64_22954658 "1|1" "1|1" "1|1"
## HiC_scaffold_64_22954682 "1/1" "1/1" "1/1"
## HiC_scaffold_65_6829971 "0/0" "0/0" "0/0"
## HiC_scaffold_65_8071102 "1|1" "0/0" "1/1"
## HiC_scaffold_65_9023979 "0/0" "1/1" "0/1"
## HiC_scaffold_65_9839671 "1/1" "1/1" NA
## HiC_scaffold_65_10404778 NA "0/0" "0/1"
## HiC_scaffold_65_11327791 NA "1/1" "1/1"
## HiC_scaffold_65_11332104 "0/0" "0/0" "0/0"
## HiC_scaffold_65_34823822 NA NA "0/0"
## HiC_scaffold_65_51418017 "1/1" "1/1" "1/1"
## HiC_scaffold_65_54053979 NA "0/1" "0/0"
## HiC_scaffold_65_57110875 "0/0" "1/1" "0/0"
## HiC_scaffold_66_15615363 "0/0" NA "0/0"
## HiC_scaffold_66_15672090 "0/1" "1|1" "0/0"
## HiC_scaffold_66_17903445 "0|1" "0|1" NA
## HiC_scaffold_66_18298629 "1|1" "1|1" "1|1"
## HiC_scaffold_66_19730676 "0/0" "1|1" "0/0"
## HiC_scaffold_66_23688768 "0/1" "0/1" "0/1"
## HiC_scaffold_66_26614535 "0/0" "0/0" "0|2"
## HiC_scaffold_66_27445665 "1/1" "1/1" "1/1"
## HiC_scaffold_66_29457165 "0/0" "0/1" "1|1"
## HiC_scaffold_66_29457180 "1|1" "1/1" "1/1"
## HiC_scaffold_66_30116287 "1/1" "1/1" "1|1"
## HiC_scaffold_66_31603503 "0/1" "0/0" "0/0"
## HiC_scaffold_66_33261460 NA "0/0" "0/0"
## HiC_scaffold_66_34138981 "0/0" "0/1" NA
## HiC_scaffold_66_34139020 "1/1" "0|1" "1/1"
## HiC_scaffold_66_34142862 "1|1" "0/1" "1/1"
## HiC_scaffold_67_1404390 "0/1" "0/0" "0/0"
## HiC_scaffold_67_28493665 "1/1" "0/0" NA
## HiC_scaffold_67_30243885 "0/0" "0/0" "0/0"
## HiC_scaffold_67_31511806 "1|1" "0|1" "0/0"
## HiC_scaffold_67_34638092 "0/0" "0/0" "0/0"
## HiC_scaffold_67_37534720 "1/1" "0/1" "1/1"
## HiC_scaffold_67_39679546 "1/1" "1/1" "0/1"
## HiC_scaffold_67_39854918 "0/1" "0|1" "1|1"
## HiC_scaffold_67_39860738 "0/0" "0/1" "0/1"
## HiC_scaffold_67_40331656 "0/0" "0/0" "0/0"
## HiC_scaffold_67_40824747 "1|1" NA "1|1"
## HiC_scaffold_68_3438132 "1|1" "1|1" "1|1"
## HiC_scaffold_68_3438133 "1|1" "1|1" "1|1"
## HiC_scaffold_68_11206902 "0/1" "0/0" "0/1"
## HiC_scaffold_68_32770607 NA "1|1" "1|1"
## HiC_scaffold_68_34016823 "2/2" "2|2" "0/0"
## HiC_scaffold_68_34020019 "0/0" "1/1" "0/1"
## HiC_scaffold_68_40296057 "0/0" "1|1" "1|1"
## HiC_scaffold_68_40296059 "0/0" "1|1" "1|1"
## HiC_scaffold_68_65001879 "1/1" "0/0" "0/0"
## HiC_scaffold_69_23311147 "0/0" "0/0" "0/0"
## HiC_scaffold_69_27351303 "0/1" "0/0" "0/0"
## HiC_scaffold_69_29437208 "1|1" "1|1" "1|1"
## HiC_scaffold_69_33699381 "1|1" "1|1" "1|1"
## HiC_scaffold_69_40194698 "0/1" "0/1" "1/1"
## HiC_scaffold_69_48273575 "0/1" "1/1" "1/1"
## HiC_scaffold_69_48348026 "0/1" "0/1" "0/1"
## HiC_scaffold_69_48348034 "1/1" "0/1" "0/1"
## HiC_scaffold_69_49563252 "1/1" "0/0" "1/1"
## HiC_scaffold_69_49593952 "0/1" "0/0" NA
## HiC_scaffold_69_49859037 "0/0" NA "0/0"
## HiC_scaffold_69_51271238 "0/0" "0/0" "1/1"
## HiC_scaffold_69_51529836 "0/0" "0/0" "0/1"
## HiC_scaffold_69_57313650 "1/1" "0/0" "1/1"
## HiC_scaffold_69_57359194 "0/0" "0/0" "0/0"
## HiC_scaffold_6951_523650 "1/1" NA "0/0"
## HiC_scaffold_6951_897126 "1|1" "1|1" "1|1"
## HiC_scaffold_6951_1134482 "1|1" "1|1" NA
## HiC_scaffold_6951_2484960 "0/0" "0/1" "0/0"
## HiC_scaffold_6951_3301273 "0/0" "0/0" "0/0"
## HiC_scaffold_6951_3314609 NA "0/0" "0/0"
## HiC_scaffold_6951_3945993 NA "1|1" NA
## HiC_scaffold_6958_218293 "2/2" "0/0" "0/0"
## HiC_scaffold_6958_449143 "0/0" "0/0" "1/1"
## HiC_scaffold_7_351023 NA "0/1" "0/1"
## HiC_scaffold_7_488024 "1|1" "1|1" "1|1"
## HiC_scaffold_7_492663 "1/1" "1/1" "1/1"
## HiC_scaffold_7_693567 "1|1" NA "1|1"
## HiC_scaffold_7_2379128 "0/0" "0/0" "0/0"
## HiC_scaffold_7_3087721 "0/1" "1/1" "1/1"
## HiC_scaffold_7_3394880 "0/1" "0/1" "0/0"
## HiC_scaffold_7_22247106 NA "1|1" "0/0"
## HiC_scaffold_70_4632611 "0|1" "1|1" "1|1"
## HiC_scaffold_70_14042778 "0/1" "0/0" "0/0"
## HiC_scaffold_71_410844 "0|1" "1|1" "0/0"
## HiC_scaffold_71_1753451 "0/0" "1/1" "0/0"
## HiC_scaffold_71_2283682 "0|1" "0|1" NA
## HiC_scaffold_71_3439685 "0|2" "0/0" "0|2"
## HiC_scaffold_71_17850462 "0/0" "0/0" NA
## HiC_scaffold_71_20588314 "1|1" "0/0" "1/1"
## HiC_scaffold_71_25465351 "0/0" "0/0" "0/0"
## HiC_scaffold_71_25465352 "0/0" "0/0" "0/0"
## HiC_scaffold_71_26356062 "0/0" "0/0" "0/0"
## HiC_scaffold_72_11785096 "1/1" "0/1" "1/1"
## HiC_scaffold_72_17285854 NA "1/1" NA
## HiC_scaffold_72_23704999 "0/0" "0/0" "0/0"
## HiC_scaffold_72_24465318 "0|1" "0/1" "0/1"
## HiC_scaffold_72_30457277 "0/0" "0/1" "1/1"
## HiC_scaffold_72_32068649 "0/0" "0/0" "1/1"
## HiC_scaffold_72_35058295 "0/1" "0/1" "0/1"
## HiC_scaffold_72_36024997 "0/1" "1|1" "1|1"
## HiC_scaffold_72_37135067 "0/0" "0/0" "0/0"
## HiC_scaffold_72_38410141 "1/1" "1/1" "0/1"
## HiC_scaffold_72_38448056 "0/0" "0/0" "1|1"
## HiC_scaffold_72_41412511 NA "0/0" "0/0"
## HiC_scaffold_73_2192629 NA "1|1" NA
## HiC_scaffold_73_2920208 "1|1" NA "1|1"
## HiC_scaffold_73_4522493 "1|1" "1|1" "1/1"
## HiC_scaffold_73_4748625 NA NA "1/1"
## HiC_scaffold_73_5839336 "1/1" "1/1" "1/1"
## HiC_scaffold_73_9338582 "0/0" "0/0" "0/0"
## HiC_scaffold_73_27393859 NA NA "0/0"
## HiC_scaffold_74_14235619 "1/1" "0/0" "1/1"
## HiC_scaffold_74_14515598 "0/1" "1/1" "1/1"
## HiC_scaffold_74_15116121 NA "1|1" "0/1"
## HiC_scaffold_74_17233613 "1/1" "0/0" "1/1"
## HiC_scaffold_74_17725340 "1|1" "0/0" "1|1"
## HiC_scaffold_74_18418135 "0/0" "0/0" "0/1"
## HiC_scaffold_74_18418138 "0/0" "0/0" "0/0"
## HiC_scaffold_74_21254425 "1/1" "0/1" "1/1"
## HiC_scaffold_74_22261065 "1/1" NA "1/1"
## HiC_scaffold_74_47132519 "0/0" NA "1|1"
## HiC_scaffold_74_50979096 "0/0" "0/0" "0/0"
## HiC_scaffold_74_51060549 "0/0" "0/0" "0/0"
## HiC_scaffold_74_53256803 "0/0" "0/0" "0/0"
## HiC_scaffold_74_55464169 "0/1" "1/1" NA
## HiC_scaffold_74_55515512 "0/0" "0/0" "0/0"
## HiC_scaffold_74_55999260 "1|1" "0/0" NA
## HiC_scaffold_74_57404902 "1|1" "1|1" "1|1"
## HiC_scaffold_74_58181927 "1|1" "0/0" "0/0"
## HiC_scaffold_74_58198600 "0/0" "0/0" "0/0"
## HiC_scaffold_74_63060195 "1/1" "1/1" "0/1"
## HiC_scaffold_75_5345466 "0/1" "0/0" NA
## HiC_scaffold_75_5346522 "0/1" "1/1" "0/1"
## HiC_scaffold_75_5346535 "0/1" "1/1" "0/1"
## HiC_scaffold_75_9850973 "1/1" NA "1|1"
## HiC_scaffold_76_27149820 "0/0" "1/1" "1/1"
## HiC_scaffold_76_31582908 "0/0" "0/1" "0/1"
## HiC_scaffold_76_31792815 "0/1" "0/0" "1/1"
## HiC_scaffold_76_35352820 "1/1" "0|1" "0/0"
## HiC_scaffold_76_57782171 NA NA "1/1"
## HiC_scaffold_76_59862401 "0|1" "0|1" NA
## HiC_scaffold_76_61095594 "0/1" "1|1" "0/1"
## HiC_scaffold_76_65496128 "1/1" "0/1" "1/1"
## HiC_scaffold_76_68965847 "0/1" "1|1" "0/1"
## HiC_scaffold_76_68966411 "0/1" NA "0/1"
## HiC_scaffold_76_69823482 "1|1" "1|1" "1|1"
## HiC_scaffold_76_73343841 "1/1" NA "0/1"
## HiC_scaffold_77_3598274 "0/1" "1|1" "1|1"
## HiC_scaffold_77_6982137 "0|1" "0/1" NA
## HiC_scaffold_77_11021994 "1|1" "1/1" "1/1"
## HiC_scaffold_77_13608165 "0/1" "0/1" "0/0"
## HiC_scaffold_77_16888594 "0/1" NA "1/1"
## HiC_scaffold_77_16888623 NA "0/0" "0|1"
## HiC_scaffold_77_16889448 NA "0/0" "0/1"
## HiC_scaffold_77_39784685 "1|1" NA "1|1"
## HiC_scaffold_77_44375866 "0/0" "0/1" "0/0"
## HiC_scaffold_77_45385370 "0/0" "0/0" "0/0"
## HiC_scaffold_78_5719919 "1/1" "0/0" "0/1"
## HiC_scaffold_78_11353297 "0/0" "0|1" "0|1"
## HiC_scaffold_78_27316392 NA "1/1" "0/1"
## HiC_scaffold_78_48124809 "0/0" "0/0" "0/0"
## HiC_scaffold_78_48124826 "0/0" "1/1" "0/0"
## HiC_scaffold_78_48126176 "1/1" "0/0" "0/0"
## HiC_scaffold_78_48279096 "0/1" "0/1" "1/1"
## HiC_scaffold_78_48434558 "0|1" "1|1" "0/1"
## HiC_scaffold_78_49759181 "1|1" "1|1" "1|1"
## HiC_scaffold_78_49759192 "0/0" "0/1" "0|1"
## HiC_scaffold_78_49759215 "0/1" "0/0" "0/1"
## HiC_scaffold_78_51364025 "1/1" "1/1" "1/1"
## HiC_scaffold_78_55395445 "0/0" "0/1" "0/1"
## HiC_scaffold_78_59610866 NA "0/1" "1/1"
## HiC_scaffold_78_62136661 "1/1" "1/1" "0/0"
## HiC_scaffold_79_1643780 "0/0" "0/0" "0/0"
## HiC_scaffold_79_2519178 NA "1/1" "1/1"
## HiC_scaffold_79_2858100 "1/1" NA "0/0"
## HiC_scaffold_79_3922454 "1/1" NA "0/1"
## HiC_scaffold_79_4127878 "1|1" "1|1" "1|1"
## HiC_scaffold_79_4543693 "1/1" "0/0" "1/1"
## HiC_scaffold_79_11507678 "0/1" "0/1" "0/1"
## HiC_scaffold_79_12618812 "0/0" "0/0" "0/0"
## HiC_scaffold_79_14185404 NA "1|1" "1|1"
## HiC_scaffold_79_17120237 "1/1" "1/1" "0/0"
## HiC_scaffold_79_17120254 "0/1" "1/1" "0/0"
## HiC_scaffold_79_35551507 "0/0" "0/0" NA
## HiC_scaffold_79_35551543 "0/0" "0/0" "0/0"
## HiC_scaffold_79_38927423 "0/0" NA "0/1"
## HiC_scaffold_79_42623307 NA "1|1" "1|1"
## HiC_scaffold_79_43179786 NA "1|1" "0/0"
## HiC_scaffold_79_43180099 "0/0" "1/1" "0/0"
## HiC_scaffold_79_43828078 "0/0" "0/0" "0|1"
## HiC_scaffold_79_43872513 "1/1" "0/0" "1/1"
## HiC_scaffold_79_44627215 "1/1" "1/1" "1/1"
## HiC_scaffold_79_50772769 "0/1" "1|1" "0/0"
## HiC_scaffold_79_55468575 "0/0" "1/1" "1/1"
## HiC_scaffold_79_55816114 "1/1" "0/0" "1/1"
## HiC_scaffold_79_59915784 "0/0" "0/0" "0/0"
## HiC_scaffold_79_60165298 NA "1|1" "1/1"
## HiC_scaffold_79_60165305 NA "1|1" "1/1"
## HiC_scaffold_79_69145556 "0/0" "0/0" "0/2"
## HiC_scaffold_79_70208305 "1|1" "1|1" "0|1"
## HiC_scaffold_79_73412292 NA "0/0" "0/0"
## HiC_scaffold_79_73416663 NA "1|1" "0/0"
## HiC_scaffold_79_73416688 NA "0|1" NA
## HiC_scaffold_79_76863102 "0/1" "0/1" "1/1"
## HiC_scaffold_79_81279649 NA "0/0" NA
## HiC_scaffold_79_81499990 NA "1/1" "1/1"
## HiC_scaffold_79_82319836 NA NA "0/0"
## HiC_scaffold_79_82319849 NA NA "1/1"
## HiC_scaffold_79_83163707 "0/1" "0/0" "0/1"
## HiC_scaffold_79_86283512 "1/1" "1/1" "1/1"
## HiC_scaffold_79_87123758 "1|1" "1|1" "1|1"
## HiC_scaffold_79_88362889 NA "0/0" "0/0"
## HiC_scaffold_79_88599431 "0/1" "1/1" "1/1"
## HiC_scaffold_79_89322919 "0/0" "0/0" "0/0"
## HiC_scaffold_79_89331918 "0/0" "1/1" "1|1"
## HiC_scaffold_79_91340958 "1|1" "1|1" "1|1"
## HiC_scaffold_8_13649836 NA "1/1" "1/1"
## HiC_scaffold_8_13650752 NA "0|1" "0|1"
## HiC_scaffold_8_23818233 "0/1" "1/1" "0/1"
## HiC_scaffold_8_24123972 "0/0" "1|1" "0/0"
## HiC_scaffold_8_24230791 "0/1" "0/0" "1/1"
## HiC_scaffold_8_24588423 "0/0" "0/0" "0/0"
## HiC_scaffold_8_25348483 "0/0" "0/0" "0/1"
## HiC_scaffold_8_25421933 "0/1" NA "0/0"
## HiC_scaffold_8_25772942 "1/1" "1/1" "0/1"
## HiC_scaffold_8_26289589 "1|1" NA "0/0"
## HiC_scaffold_8_27602740 "0/0" "0/0" "1|1"
## HiC_scaffold_8_28159063 "1/1" "1/1" NA
## HiC_scaffold_8_30829320 "0/0" "0/1" "0/0"
## HiC_scaffold_8_31044084 "0/0" "0/0" "0/0"
## HiC_scaffold_8_31415507 "1|2" "0/0" "2|2"
## HiC_scaffold_8_32594682 "0/0" "0/0" NA
## HiC_scaffold_80_3617847 NA "1/1" "1/1"
## HiC_scaffold_80_5758183 "0/0" "0/1" "0/0"
## HiC_scaffold_80_6760006 "1|1" "0|1" "1|1"
## HiC_scaffold_80_6760037 "1/1" "0/1" "0/0"
## HiC_scaffold_80_7772622 "1/1" "1/1" "1/1"
## HiC_scaffold_80_7919533 "0/1" "0/1" "0/1"
## HiC_scaffold_80_8110052 "0/0" "0/0" "1|1"
## HiC_scaffold_80_8193366 "1/1" "1/1" "1/1"
## HiC_scaffold_80_8625784 "1/1" "1/1" "1/1"
## HiC_scaffold_80_8912846 "0/1" "1/1" "0/1"
## HiC_scaffold_80_9544102 "0/0" "1/1" "0/1"
## HiC_scaffold_80_10770701 "0/0" "0/1" "1/1"
## HiC_scaffold_80_11590146 "0/0" "0/0" "0/0"
## HiC_scaffold_80_16953653 "0/0" "0/0" "1/1"
## HiC_scaffold_80_18938832 "1|1" "1|1" "1|1"
## HiC_scaffold_80_19015946 "1|1" "1/1" "1/1"
## HiC_scaffold_80_19404001 "1/1" "1/1" "1/1"
## HiC_scaffold_80_25346708 "0/1" "0/1" "1|1"
## HiC_scaffold_80_37479851 "0/0" NA "0/0"
## HiC_scaffold_80_37507516 "0/0" "0/0" "0/1"
## HiC_scaffold_81_1187192 "0/1" "1/1" "1/1"
## HiC_scaffold_81_2689826 "1|1" "1|1" "1|1"
## HiC_scaffold_81_2690751 "1|1" "1|1" "1|1"
## HiC_scaffold_81_6614123 "0/0" NA "0/0"
## HiC_scaffold_81_7836855 NA "0/0" "0/0"
## HiC_scaffold_81_10334868 "0/0" "0/1" "0/1"
## HiC_scaffold_81_10458752 "0/0" "0/1" "1/1"
## HiC_scaffold_81_17515538 NA "1/1" "1/1"
## HiC_scaffold_81_40271282 "0/0" "0/0" "0/1"
## HiC_scaffold_81_40271294 "1/1" "1/1" "0|1"
## HiC_scaffold_81_41096427 "0/0" "0/0" "1|1"
## HiC_scaffold_81_41096444 "0/0" "0/0" "1|1"
## HiC_scaffold_81_43820595 "0/0" NA "1/1"
## HiC_scaffold_81_43820732 "0/0" "0/0" "1|1"
## HiC_scaffold_81_43854278 "0/0" "1/1" "0/1"
## HiC_scaffold_81_44804862 "0/0" "0/0" "0/0"
## HiC_scaffold_81_45063428 "0/0" "0|1" "0/1"
## HiC_scaffold_81_45950590 "0/1" "0/0" "0/0"
## HiC_scaffold_81_46714752 "1|1" "0|1" "0/0"
## HiC_scaffold_81_46714759 "1|1" "0|1" "0/0"
## HiC_scaffold_81_47170397 "1|1" NA "1|1"
## HiC_scaffold_81_47628201 "0/0" "1|1" "0/0"
## HiC_scaffold_81_48105216 "1|1" "1|1" "0|1"
## HiC_scaffold_81_48932070 "0/0" "0/0" "0/0"
## HiC_scaffold_81_54050146 NA "1/1" "1/1"
## HiC_scaffold_82_5672063 "0/0" "0/0" "0/0"
## HiC_scaffold_82_8796823 "0/1" "0/1" "1|1"
## HiC_scaffold_82_13450959 "1/1" "1/1" "1/1"
## HiC_scaffold_82_26144442 "0/0" "0|1" "0/0"
## HiC_scaffold_82_26147011 "1|1" "1|1" "1|1"
## HiC_scaffold_82_28907834 "0/0" "0/0" "0/0"
## HiC_scaffold_82_34413793 "0|1" NA "1|1"
## HiC_scaffold_82_34413800 "1/1" NA "0/0"
## HiC_scaffold_82_36173035 "0/0" "0/0" "0/0"
## HiC_scaffold_82_40539273 NA "0/1" "1/1"
## HiC_scaffold_82_41470256 "1/1" "1/1" "1/1"
## HiC_scaffold_83_23993605 "1/1" "0/0" "0/1"
## HiC_scaffold_83_35035961 "0/0" "0/1" "0/0"
## HiC_scaffold_83_43423618 "1|1" "0/0" "0/0"
## HiC_scaffold_83_46920654 "0/0" "1/1" "1|1"
## HiC_scaffold_83_46934197 "0/0" "1|1" "1|1"
## HiC_scaffold_84_356301 "0/0" "0/0" "0/1"
## HiC_scaffold_84_5761817 "0/0" "0/0" "1/1"
## HiC_scaffold_84_5769022 NA "0/0" "0/0"
## HiC_scaffold_84_6288130 NA NA NA
## HiC_scaffold_84_6288141 NA NA NA
## HiC_scaffold_84_6288147 NA NA NA
## HiC_scaffold_84_7069238 "1|1" "0/0" "1|1"
## HiC_scaffold_84_9131309 "0/0" "0/0" "1/1"
## HiC_scaffold_84_10148442 "0/1" "0/1" "0/1"
## HiC_scaffold_84_14659391 "0|1" "0/1" NA
## HiC_scaffold_84_16302752 "1/1" "2|2" "2|2"
## HiC_scaffold_84_18463244 "0/1" "1/1" NA
## HiC_scaffold_84_22909575 "0|1" NA "1|1"
## HiC_scaffold_84_29275266 "0/0" "0/0" "0/1"
## HiC_scaffold_84_31184610 "1/1" "1/1" NA
## HiC_scaffold_84_33093169 "1|1" "1|1" "0/0"
## HiC_scaffold_84_37675180 "0/0" "0/1" "0/1"
## HiC_scaffold_84_39501814 "0|1" "0/1" "0/1"
## HiC_scaffold_84_50169438 "0|1" NA "0/0"
## HiC_scaffold_84_50169445 "0|1" NA "0/0"
## HiC_scaffold_84_51231025 "0/0" "0/1" "0/0"
## HiC_scaffold_85_9792207 "1/1" NA "0/0"
## HiC_scaffold_85_11784233 NA "0/0" "0/0"
## HiC_scaffold_85_11911022 "0/0" "0/0" "1|1"
## HiC_scaffold_85_11911142 "1/1" "1/1" "0/1"
## HiC_scaffold_85_11913828 "0/1" "0/0" "0/0"
## HiC_scaffold_85_11913831 "0/1" "1/1" "0/1"
## HiC_scaffold_85_12353081 "0/0" "0/0" "0/0"
## HiC_scaffold_85_12414551 "0/0" "0/0" NA
## HiC_scaffold_85_13043967 "0/0" "0/0" "0/0"
## HiC_scaffold_85_13221888 "0/0" "0/0" "0/0"
## HiC_scaffold_85_27008863 "0/1" "0/1" "1/1"
## HiC_scaffold_85_28992264 "1|1" "1/1" "0|1"
## HiC_scaffold_85_28992268 "1|1" "1/1" "1|1"
## HiC_scaffold_85_64310850 "1|1" "1|1" "1|1"
## HiC_scaffold_85_65135112 "1/1" "0/0" "0/0"
## HiC_scaffold_85_65563529 "0/1" "0/1" "0/0"
## HiC_scaffold_86_1949664 "0/0" "0/0" "0/0"
## HiC_scaffold_86_5340423 "1/1" "1/1" "1/1"
## HiC_scaffold_86_5483991 "0/1" "1|1" "1|1"
## HiC_scaffold_86_8928469 "1/1" "1|1" "0/0"
## HiC_scaffold_86_23727924 "0/1" "0/0" "0/0"
## HiC_scaffold_86_24825818 "1|1" "1|1" "1|1"
## HiC_scaffold_86_25333718 "1/1" "1/1" "1/1"
## HiC_scaffold_86_29668168 "0/1" "0/0" "0/0"
## HiC_scaffold_86_30914243 NA "1|1" "1|1"
## HiC_scaffold_86_32040320 "0|1" "1|1" "1|1"
## HiC_scaffold_86_32040329 "0|1" "1|1" "1|1"
## HiC_scaffold_86_32125061 "0/1" "1/1" "1/1"
## HiC_scaffold_86_32144758 "0/1" "0/1" NA
## HiC_scaffold_86_32153692 NA "1/1" "1/1"
## HiC_scaffold_86_32534129 "0/0" "0/1" "1/1"
## HiC_scaffold_86_32605768 "1|1" "0/1" "0/0"
## HiC_scaffold_86_36355399 "0/1" "0/1" "0/0"
## HiC_scaffold_86_36357265 "1/1" "1/1" "1/1"
## HiC_scaffold_87_1253643 "0/0" "0/0" "0/1"
## HiC_scaffold_87_2137958 NA "0/1" "0/0"
## HiC_scaffold_87_3980100 "1/1" "1/1" "1/1"
## HiC_scaffold_87_4395923 "0/0" "1/1" "1/1"
## HiC_scaffold_87_5489328 "1|1" "1|1" "1|1"
## HiC_scaffold_87_6300441 "1|1" "1/1" NA
## HiC_scaffold_87_16306904 "1/1" "1/1" "1/1"
## HiC_scaffold_87_44780945 "1|1" "1|1" "0|1"
## HiC_scaffold_88_5584327 "1/1" NA "0|1"
## HiC_scaffold_88_7104630 NA "1|1" "0/0"
## HiC_scaffold_88_7104631 NA "0/0" "0|1"
## HiC_scaffold_88_7104638 NA "1|1" "0|1"
## HiC_scaffold_88_7104639 NA "0/0" "0|1"
## HiC_scaffold_88_7104640 NA "1|1" "0|1"
## HiC_scaffold_88_7479340 "0/0" "1/1" "0/0"
## HiC_scaffold_88_8773607 "0/1" "0/0" "0/0"
## HiC_scaffold_88_9883678 NA "1|1" "1|1"
## HiC_scaffold_88_10878718 "0/0" "0/1" "0/0"
## HiC_scaffold_88_19365116 NA "0/0" "0/1"
## HiC_scaffold_88_20477349 "1/1" "1/1" "1/1"
## HiC_scaffold_88_20557885 "1/1" "0/1" "1/1"
## HiC_scaffold_89_675045 NA "1/1" "0/1"
## HiC_scaffold_89_2815845 "0/0" "0/0" "0/0"
## HiC_scaffold_89_2843940 "0/0" "0/1" "1/1"
## HiC_scaffold_89_3018830 "1/1" "0/1" "0/1"
## HiC_scaffold_89_13745506 "0/0" "0/0" "0/0"
## HiC_scaffold_89_30006907 "0/0" "0/0" "1/1"
## HiC_scaffold_89_36509388 "0/0" "0/0" "0/0"
## HiC_scaffold_89_38703735 NA "0/1" "0/0"
## HiC_scaffold_89_38764895 NA "1/1" "1/1"
## HiC_scaffold_89_42052609 "0/0" "0/0" "0/0"
## HiC_scaffold_89_42054991 "0/0" "0/0" "0/0"
## HiC_scaffold_89_44306958 NA "0/1" "0/1"
## HiC_scaffold_89_44338206 NA "0/1" "0/0"
## HiC_scaffold_89_45298973 "1/1" "1/1" "1/1"
## HiC_scaffold_9_3529921 "1/1" "1/1" "1/1"
## HiC_scaffold_9_5660454 NA "0/0" "0/1"
## HiC_scaffold_9_5660461 NA "1|1" "0|1"
## HiC_scaffold_9_5854070 "1/1" "0/0" NA
## HiC_scaffold_9_6142415 "0/0" "1|1" "1|1"
## HiC_scaffold_9_6142436 "0/0" "0|1" "1|1"
## HiC_scaffold_9_6143781 "0/0" "1/1" "0/0"
## HiC_scaffold_9_6654825 "0/0" "0/0" "0/0"
## HiC_scaffold_9_7094545 "0/1" "1|1" "1|1"
## HiC_scaffold_9_7100208 "0/0" "1|1" "0|1"
## HiC_scaffold_9_7109988 "1/1" "1|1" "0/0"
## HiC_scaffold_9_7111922 "1|1" "1|1" "0/0"
## HiC_scaffold_9_8235781 "1/1" "1/1" "1/1"
## HiC_scaffold_9_8279558 NA "1/1" "0/1"
## HiC_scaffold_9_15679481 "0|1" "0/0" "0/0"
## HiC_scaffold_9_18082611 "0/0" "0/0" "0/2"
## HiC_scaffold_9_18090830 NA "0/1" "0/0"
## HiC_scaffold_9_30240531 "1/1" "1/1" "1/1"
## HiC_scaffold_90_10418696 "1/1" "1/1" "0/0"
## HiC_scaffold_90_11470224 "0/0" "0/0" "0/0"
## HiC_scaffold_90_13593319 "0/1" "0/0" "1/1"
## HiC_scaffold_90_16260161 "0/0" "0/0" "0/0"
## HiC_scaffold_90_22325499 "0/0" "1/1" "0/0"
## HiC_scaffold_90_23574204 "1|1" "1|1" "0/0"
## HiC_scaffold_90_23609908 "0/1" "0/1" "0/0"
## HiC_scaffold_90_23623078 "1|1" "1|1" "0/0"
## HiC_scaffold_90_23626883 "0/1" "1/1" "0/0"
## HiC_scaffold_90_23812663 NA "1/1" "1/1"
## HiC_scaffold_90_25939283 "0/0" NA "0/1"
## HiC_scaffold_90_25985714 "1/1" "1/1" "0/0"
## HiC_scaffold_90_30751272 "0/1" "0/1" "0/1"
## HiC_scaffold_90_31232025 "1|1" "1|1" "0/0"
## HiC_scaffold_90_31245699 NA "1/1" "0/1"
## HiC_scaffold_90_31527975 "1/1" "1/1" "0/0"
## HiC_scaffold_90_31546172 "0/0" "0/0" NA
## HiC_scaffold_90_38511996 NA "1|1" "0|1"
## HiC_scaffold_90_38511999 NA "1|1" "0|1"
## HiC_scaffold_90_38517279 "0/1" "1/1" "0/1"
## HiC_scaffold_90_40624104 "0/0" "0/0" NA
## HiC_scaffold_91_5644765 NA "0|1" "0/1"
## HiC_scaffold_91_5867214 "0|1" "0|1" "0/0"
## HiC_scaffold_91_5867226 "0|1" "0|1" "0/0"
## HiC_scaffold_91_7704263 "1|1" "1|1" "0/0"
## HiC_scaffold_91_7871360 "0/1" "0/1" "0/1"
## HiC_scaffold_91_8538014 "0/1" "1/1" "1/1"
## HiC_scaffold_91_13230485 "0/0" "0/0" "0/0"
## HiC_scaffold_91_28696118 "1/1" "0/1" "1/1"
## HiC_scaffold_91_28696625 "0/0" "0/0" "0/0"
## HiC_scaffold_91_42177482 NA "0/0" "0/0"
## HiC_scaffold_91_46813640 "0/0" "1/1" "0/0"
## HiC_scaffold_92_23783035 "0/0" "0|2" "0/0"
## HiC_scaffold_92_23783036 "0/0" "0|2" "0/0"
## HiC_scaffold_92_24712793 "1/1" "0/0" "0/0"
## HiC_scaffold_92_28698258 "1/1" "1/1" "1/1"
## HiC_scaffold_92_40691582 NA "1/1" "0/0"
## HiC_scaffold_92_43967712 "0/0" "0/0" "0/1"
## HiC_scaffold_92_47147572 NA "0/0" "0/0"
## HiC_scaffold_92_49042714 "1|1" "1|1" "1|1"
## HiC_scaffold_92_49042715 "1|1" "1|1" "1|1"
## HiC_scaffold_92_53634002 "1/1" "1/1" "1/1"
## HiC_scaffold_92_58211868 NA "0/1" "1|1"
## HiC_scaffold_92_60114155 "0/0" "1|1" "1|1"
## HiC_scaffold_92_63603483 "0/1" "0/0" "0|1"
## HiC_scaffold_92_64797225 "0/0" "0/0" "0/0"
## HiC_scaffold_92_68367476 "0/0" "0/0" "0|2"
## HiC_scaffold_93_1912167 "1|1" "0/0" "0/0"
## HiC_scaffold_93_2485978 "0/1" "0/0" "0/0"
## HiC_scaffold_93_3227638 "0/0" "1/1" "1/1"
## HiC_scaffold_93_3227641 "1|1" "0/0" "0/0"
## HiC_scaffold_93_13971208 "1/1" "1/1" "1/1"
## HiC_scaffold_93_13987080 "0/1" "0/0" "0/1"
## HiC_scaffold_93_21125468 "1/1" "1/1" "0/1"
## HiC_scaffold_93_21845293 "1/1" "0/0" "0/1"
## HiC_scaffold_93_21845310 "0/0" "1|1" "0/0"
## HiC_scaffold_93_21846342 "1/1" "0/0" "0|1"
## HiC_scaffold_93_21846356 "0/0" "0/0" "0|1"
## HiC_scaffold_93_22589723 "0/0" "0/0" "0/1"
## HiC_scaffold_93_22619278 "1/1" "1/1" "1/1"
## HiC_scaffold_93_22631258 "1|1" "0/1" "1|1"
## HiC_scaffold_93_22631266 "1|1" "0/0" "1|1"
## HiC_scaffold_94_3110102 "1/1" NA "1/1"
## HiC_scaffold_94_3205919 NA "0/0" "1/1"
## HiC_scaffold_94_9023846 "1/1" "0/0" "0/0"
## HiC_scaffold_94_11572820 "0/1" "1/1" "0/0"
## HiC_scaffold_94_12368532 "0/0" "1/1" NA
## HiC_scaffold_94_42179418 "0/1" "0/0" "0/0"
## HiC_scaffold_94_42179519 "1/1" "1/1" NA
## HiC_scaffold_94_51646206 "0/0" "0/0" "0/0"
## HiC_scaffold_94_52781289 "1/1" "1/1" "1/1"
## HiC_scaffold_94_53790035 "1/1" NA "0/1"
## HiC_scaffold_94_53792738 "1/1" "1/1" "1/1"
## HiC_scaffold_94_56768905 "1|1" "1|1" "1|1"
## HiC_scaffold_946_81276 "0/1" "0/1" "0/0"
## HiC_scaffold_95_3189690 "1/1" "1/1" "1/1"
## HiC_scaffold_95_4397298 "1|1" "0/1" "1|1"
## HiC_scaffold_95_9469157 "0/1" "1|1" "0|1"
## HiC_scaffold_95_10641411 "0/1" "0/0" NA
## HiC_scaffold_95_10949821 "0/0" "0/0" "0/0"
## HiC_scaffold_95_12993394 "0|1" "1|1" "0|1"
## HiC_scaffold_95_15515793 "1|1" "0/0" "1|1"
## HiC_scaffold_95_15608785 "0|1" "0/0" "1|1"
## HiC_scaffold_95_15609137 "0/0" "0/0" "0/1"
## HiC_scaffold_95_16295316 NA "0/0" "0/0"
## HiC_scaffold_95_22656165 "0/0" "0|1" "0|1"
## HiC_scaffold_95_25885727 NA "0/0" "0/0"
## HiC_scaffold_96_10460019 "0/1" "0/0" NA
## HiC_scaffold_96_27155785 "0/1" "0/0" "0/0"
## HiC_scaffold_96_37939434 "1|1" NA "0/1"
## HiC_scaffold_96_51115048 NA "1/1" "1|1"
## HiC_scaffold_96_51116511 "1/1" NA "0/0"
## HiC_scaffold_96_51915040 "0/0" "0/1" "1|1"
## HiC_scaffold_96_52681287 "0/0" "0/1" NA
## HiC_scaffold_96_53276519 "0/1" "0/0" "0/1"
## HiC_scaffold_97_1736926 "0/0" "0/0" "0/0"
## HiC_scaffold_97_1736994 "0/0" "0/0" "0/0"
## HiC_scaffold_97_3863543 NA "1/1" "0/0"
## HiC_scaffold_97_4200445 NA "0/1" "0/1"
## HiC_scaffold_97_4799162 "0|1" "0/0" "0/0"
## HiC_scaffold_97_5027892 "1/1" "1/1" "1/1"
## HiC_scaffold_97_8007933 "0/0" "1|1" NA
## HiC_scaffold_97_17997210 "1|1" "1|1" NA
## HiC_scaffold_97_18604647 "1|1" "0/0" "1/1"
## HiC_scaffold_97_20239636 "0|1" "0/0" "0|1"
## HiC_scaffold_98_15154096 NA "1|1" "1|1"
## HiC_scaffold_98_22342667 "0/0" "1/1" "0/0"
## HiC_scaffold_98_22634293 "1|1" "1|1" "1|1"
## HiC_scaffold_98_22634294 "1|1" "1|1" "1|1"
## HiC_scaffold_98_22721138 "1/1" "1|1" "0/1"
## HiC_scaffold_98_22869378 NA "0/0" "0/0"
## HiC_scaffold_98_24108405 "1|1" "1|1" "1|1"
## HiC_scaffold_98_27359592 "0/0" "1/1" "0|1"
## HiC_scaffold_98_28549834 "0/0" "1/1" "0/1"
## HiC_scaffold_98_28867520 "0/0" "0/0" "0/0"
## HiC_scaffold_98_28867524 "0/0" "0/0" "0/0"
## HiC_scaffold_98_29431717 "1|1" "0/0" "1|1"
## HiC_scaffold_98_29675109 "0/1" "0/1" "1/1"
## HiC_scaffold_99_1163244 "1/1" "0/1" "1/1"
## HiC_scaffold_99_1451611 "0/0" "1|1" "0/1"
## HiC_scaffold_99_2021961 "2|2" "0/0" "0/2"
## HiC_scaffold_99_5134392 "0/0" "0/1" "0/1"
## HiC_scaffold_99_5239109 "0/0" "0/0" "0/0"
## HiC_scaffold_99_6917738 "1|1" "1|1" "1|1"
## HiC_scaffold_99_11221970 "1|1" "0|1" "0/0"
## HiC_scaffold_99_25982503 "0/0" "1/1" "1/1"
## Tank_5_Crab_1 Tank_5_Crab_2 Tank_5_Crab_3
## HiC_scaffold_1_2523394 "0/0" "1/1" NA
## HiC_scaffold_1_2542157 "1/1" "0/0" "0/1"
## HiC_scaffold_1_2647806 "1/1" "1/1" "1/1"
## HiC_scaffold_1_2970226 "0/1" "0/0" "0/1"
## HiC_scaffold_1_3329447 NA "2|2" "0/0"
## HiC_scaffold_1_3795100 "0/0" "0|1" "0/0"
## HiC_scaffold_10_2221345 "1|1" "1|1" "0/0"
## HiC_scaffold_10_2299490 "0/0" "0/0" "0|1"
## HiC_scaffold_10_2565301 "1/1" "0/0" "0/1"
## HiC_scaffold_10_3864355 "1/1" "1/1" NA
## HiC_scaffold_10_4319900 "1|1" NA NA
## HiC_scaffold_10_4319907 "1|1" NA NA
## HiC_scaffold_10_5404579 "0/1" "1/1" "0/0"
## HiC_scaffold_10_5843373 "1/1" "1/1" "0/1"
## HiC_scaffold_100_854947 "0/0" NA "0/0"
## HiC_scaffold_100_1070817 "0/1" "1/1" "1/1"
## HiC_scaffold_100_2002094 "1|1" "1|1" "0/0"
## HiC_scaffold_100_2002097 "1|1" "1|1" "0/0"
## HiC_scaffold_100_2010331 "0/0" "0/0" NA
## HiC_scaffold_100_5186498 "0/1" "1/1" "0/1"
## HiC_scaffold_100_5828477 "0/1" "1/1" "0/0"
## HiC_scaffold_100_6470419 "0|1" "1/1" NA
## HiC_scaffold_100_6739225 "1/1" "0/0" "1/1"
## HiC_scaffold_100_6739258 "1|1" "0/0" "1|1"
## HiC_scaffold_100_6739264 "1|1" "0/0" "1|1"
## HiC_scaffold_100_6907177 "0/0" "0/0" "0/0"
## HiC_scaffold_100_8384481 "0/0" NA "0|0"
## HiC_scaffold_100_8384495 "0/0" NA "0|0"
## HiC_scaffold_100_9451470 "0/0" "0/0" "0/0"
## HiC_scaffold_100_10464574 "0/1" "0/0" "1/1"
## HiC_scaffold_100_11934792 NA NA "0/0"
## HiC_scaffold_100_11980177 "1/1" "1|1" "0|1"
## HiC_scaffold_100_18465760 "0|1" "0/0" "0/0"
## HiC_scaffold_100_18465762 "0|1" "0/0" "0/0"
## HiC_scaffold_100_18466205 "0/2" "0/0" "0/0"
## HiC_scaffold_100_31738115 "0/1" "0/1" "0/0"
## HiC_scaffold_100_44227362 NA NA "0/0"
## HiC_scaffold_101_12808961 "0/0" "0/0" NA
## HiC_scaffold_101_13897149 "0/1" "1/1" "1/1"
## HiC_scaffold_101_18337279 "0/0" "0/0" "0/0"
## HiC_scaffold_101_20800167 "1/1" "0/0" "1/1"
## HiC_scaffold_102_2260041 "1/1" NA "0/0"
## HiC_scaffold_102_8734519 "0|1" "0/0" "1|1"
## HiC_scaffold_102_10233999 "1|1" "1|1" "1|1"
## HiC_scaffold_102_11446042 "0/0" "0/0" "1/1"
## HiC_scaffold_102_15918694 "1|1" "0/0" "1/1"
## HiC_scaffold_102_15935667 "1/1" "0/0" "0/1"
## HiC_scaffold_102_17442643 NA "1/1" "1/1"
## HiC_scaffold_102_17608969 "1/1" "0/0" NA
## HiC_scaffold_102_20180185 "0/0" "0/0" "1/1"
## HiC_scaffold_102_24788723 "0/0" "0/0" "0/1"
## HiC_scaffold_102_25423729 "0/0" "1|1" "1|1"
## HiC_scaffold_102_39755142 NA "1/1" "1/1"
## HiC_scaffold_102_52046978 "0/0" "0/0" "0/0"
## HiC_scaffold_1027_34152 "0/1" "1|1" "1/1"
## HiC_scaffold_103_601715 NA "0/0" "1/1"
## HiC_scaffold_103_2891384 NA "0/0" "0/0"
## HiC_scaffold_103_8191270 "0/0" "1|1" "0/0"
## HiC_scaffold_103_9521272 NA "0/0" "0/0"
## HiC_scaffold_103_14768909 "1|1" "0/0" "0/0"
## HiC_scaffold_103_19312119 "0/0" "1|1" "0/0"
## HiC_scaffold_103_21284866 "0/0" NA "0/0"
## HiC_scaffold_103_31428453 "1|1" NA "0/0"
## HiC_scaffold_103_42567396 "0/1" "0/1" "0/1"
## HiC_scaffold_103_45921571 "0/0" "0|1" "1|1"
## HiC_scaffold_103_45921573 "0/0" "0|1" "1|1"
## HiC_scaffold_103_49592022 "0/0" "0/1" "0/0"
## HiC_scaffold_103_49620132 "0|1" "1|1" "0/0"
## HiC_scaffold_103_50440915 NA "0/0" "0/0"
## HiC_scaffold_103_51944137 "1/1" "1/1" "1/1"
## HiC_scaffold_103_54308582 "0/0" "0/0" "0/0"
## HiC_scaffold_103_54424067 NA "1|1" "0/0"
## HiC_scaffold_103_56932900 "1/1" "1/1" "1/1"
## HiC_scaffold_103_57470264 "1|1" "1|1" NA
## HiC_scaffold_104_7771140 NA "1/1" "1/1"
## HiC_scaffold_104_9103028 "1/1" "0/1" "0/1"
## HiC_scaffold_104_10633168 NA "0/0" "1/1"
## HiC_scaffold_104_18917031 "0/0" "0/0" "1/1"
## HiC_scaffold_104_20851902 "0/1" "0/0" NA
## HiC_scaffold_104_24451803 "1/1" NA "0/1"
## HiC_scaffold_104_28597688 "0/1" "0|1" NA
## HiC_scaffold_104_40927999 NA "0/0" "0/1"
## HiC_scaffold_104_46490074 "0/0" "0/1" "0/0"
## HiC_scaffold_104_49759053 "0/0" "1/1" "0/0"
## HiC_scaffold_104_57267896 "0/0" "0/1" "0/0"
## HiC_scaffold_104_62570010 "0/0" "0/0" "0/0"
## HiC_scaffold_11_32804173 "0/0" "1/1" "0/0"
## HiC_scaffold_11_34516508 "1/1" "1/1" NA
## HiC_scaffold_11_35332996 "1/1" "0/1" NA
## HiC_scaffold_11_35904027 "0/0" "1/1" "1/1"
## HiC_scaffold_11_41539793 "1|1" "0/1" NA
## HiC_scaffold_11_41604080 "1|1" "0/0" "1/1"
## HiC_scaffold_11_42855323 "0/0" "0/0" "0/0"
## HiC_scaffold_11_45339409 "0/0" NA NA
## HiC_scaffold_11_45339410 "0/0" NA "0/0"
## HiC_scaffold_11_47544035 "1/1" "0/0" "1/1"
## HiC_scaffold_12_7515164 "0/0" "0/1" NA
## HiC_scaffold_12_12640100 "0/0" "0/0" "0/0"
## HiC_scaffold_12_12826705 "1|1" "0/0" "0/0"
## HiC_scaffold_12_14899285 "0/1" "0/0" "1/1"
## HiC_scaffold_12_17465672 "0/0" "0/0" NA
## HiC_scaffold_12_22770710 "0/0" "0/0" NA
## HiC_scaffold_12_32318964 "0|1" "1|1" "1|1"
## HiC_scaffold_12_35136373 "0/1" "0|1" "1|1"
## HiC_scaffold_12_40687860 "1|1" "0/0" "0/0"
## HiC_scaffold_13_2938168 "0/0" "1/1" "1/1"
## HiC_scaffold_13_20350974 "0/1" "1/1" "0/0"
## HiC_scaffold_13_27759554 "0/1" NA "1/1"
## HiC_scaffold_13_28146828 "2|2" "0/0" NA
## HiC_scaffold_13_28146830 "2|2" "0/0" NA
## HiC_scaffold_13_28925343 "0/1" "1/1" "2/2"
## HiC_scaffold_13_31913129 "0/0" "0/0" "1/1"
## HiC_scaffold_13_32078924 "0/0" "0/0" NA
## HiC_scaffold_13_33864805 NA "0/0" "1/1"
## HiC_scaffold_13_34892542 "1/1" "0/1" NA
## HiC_scaffold_13_34893103 "0/0" "1|1" "0|1"
## HiC_scaffold_13_35762551 NA "0|1" "1|1"
## HiC_scaffold_13_35881745 "1/1" "1/1" "0/1"
## HiC_scaffold_13_35881749 "0/1" NA "0/0"
## HiC_scaffold_14_3843214 "0/0" "0/0" "0/1"
## HiC_scaffold_14_25884262 "0/0" NA "0/0"
## HiC_scaffold_14_27050415 "1/1" "1/1" "1/1"
## HiC_scaffold_14_27118495 "0/0" "1/1" "1/1"
## HiC_scaffold_14_27277222 "0/0" "0/0" "0/0"
## HiC_scaffold_14_29215814 "0/0" "0/0" "0/0"
## HiC_scaffold_15_2460398 "1|1" NA "1|1"
## HiC_scaffold_15_2462980 "0/0" "1|1" NA
## HiC_scaffold_15_2467289 NA "0/0" "1/1"
## HiC_scaffold_15_5669141 "1/1" "1/1" "1/1"
## HiC_scaffold_15_13700694 "0/1" "0/2" NA
## HiC_scaffold_15_17825275 "0|1" "0|1" "0|1"
## HiC_scaffold_15_19938475 "1/1" "0/1" "1/1"
## HiC_scaffold_15_23865956 "1|1" "1|1" "1|1"
## HiC_scaffold_15_28837774 "0/0" "1/1" "1|1"
## HiC_scaffold_15_28837810 "0/0" "1/1" "0/0"
## HiC_scaffold_15_28837823 NA "0|1" "0/0"
## HiC_scaffold_15_28837835 NA "0|1" "0/0"
## HiC_scaffold_15_28837841 "0/0" "0/0" "0/0"
## HiC_scaffold_15_28837854 "1/1" "1|1" NA
## HiC_scaffold_15_34827832 "1/1" NA "0/0"
## HiC_scaffold_15_34893807 "0/0" NA "0/0"
## HiC_scaffold_15_35327348 "0/0" "0/0" "0/0"
## HiC_scaffold_15_42161112 "0|0" NA "0/0"
## HiC_scaffold_15_42164926 "0/0" NA "0|1"
## HiC_scaffold_15_42164946 "0/0" NA "0/1"
## HiC_scaffold_15_46289572 "0/1" "0/0" "1/1"
## HiC_scaffold_15_50591576 "1|1" "1|1" NA
## HiC_scaffold_15_50759128 "0/1" "1|1" "0/0"
## HiC_scaffold_15_51188336 "0/0" "1|1" "1|1"
## HiC_scaffold_15_54726640 "1/1" "1/1" "1/1"
## HiC_scaffold_15_54788235 "0/1" "1/1" "0/0"
## HiC_scaffold_15_56162375 "0/0" "0/0" "0|1"
## HiC_scaffold_15_61091106 "0/1" "1/1" NA
## HiC_scaffold_15_61464359 "1/1" "0/1" "1|1"
## HiC_scaffold_15_61510386 NA "1/1" "1/1"
## HiC_scaffold_15_62309788 NA "0/0" "0|1"
## HiC_scaffold_15_62309793 NA "0/0" "0|1"
## HiC_scaffold_15_62771254 "0/0" NA "1/1"
## HiC_scaffold_15_63493927 "1/1" "1/1" "1/1"
## HiC_scaffold_15_64997502 "0/0" "1/1" "0/1"
## HiC_scaffold_15_65007865 "0|1" "1|1" "1/1"
## HiC_scaffold_15_65007879 "0/0" NA NA
## HiC_scaffold_15_66038529 "1/1" "0/1" "0/0"
## HiC_scaffold_15_69811281 "0/1" "1/1" "1/1"
## HiC_scaffold_16_14205925 NA "0/1" "0/0"
## HiC_scaffold_16_30404047 "0|1" "1|1" "0/0"
## HiC_scaffold_16_57413288 "1|1" NA "1|1"
## HiC_scaffold_16_63687578 "0/0" "0/0" "0|1"
## HiC_scaffold_16_74138787 "0/1" NA "1/1"
## HiC_scaffold_16_74140106 "0/0" "1/1" NA
## HiC_scaffold_16_76276015 "1/1" NA "1/1"
## HiC_scaffold_17_11390873 "0/1" "1|1" NA
## HiC_scaffold_17_12551128 "1/1" "1/1" "1/1"
## HiC_scaffold_17_16615612 "1/1" NA "0/0"
## HiC_scaffold_17_18838093 NA "0/0" NA
## HiC_scaffold_17_22801072 "1/1" "1/1" NA
## HiC_scaffold_17_23788599 "0/1" "0|1" "1/1"
## HiC_scaffold_17_29383895 "0/0" "0/0" "1/1"
## HiC_scaffold_17_29618771 "0/0" "1/1" "0/1"
## HiC_scaffold_17_29976139 "0/1" "0/0" "0/0"
## HiC_scaffold_17_31107213 "1/1" "0/1" "1/1"
## HiC_scaffold_17_32493792 "1/1" NA "0/1"
## HiC_scaffold_17_33732050 "0/0" "1/1" NA
## HiC_scaffold_17_33801314 "0/0" "0|1" "0/1"
## HiC_scaffold_17_34081889 "1/1" "1/1" "0/1"
## HiC_scaffold_18_227565 "0/0" "0/0" NA
## HiC_scaffold_18_1213486 "1/1" NA "1/1"
## HiC_scaffold_18_1701312 "0/0" "0/0" "0|1"
## HiC_scaffold_18_3506437 "1/1" "1/1" "1/1"
## HiC_scaffold_18_6304978 "0/0" "1/1" "1/1"
## HiC_scaffold_18_6351493 "1/1" "1/1" "1/1"
## HiC_scaffold_18_6358009 "1/1" "0/0" NA
## HiC_scaffold_18_10770701 "0/0" "0/0" "0/0"
## HiC_scaffold_18_13342858 "0/0" "0/1" "1/1"
## HiC_scaffold_18_20045832 "0/0" "0/0" "0/0"
## HiC_scaffold_18_22682683 "1/1" "0/0" "0/0"
## HiC_scaffold_18_26337790 "1|1" "0/0" "1|1"
## HiC_scaffold_18_48929148 "1/1" "1|1" "0/0"
## HiC_scaffold_18_51490626 "1/1" "0/0" "1/1"
## HiC_scaffold_18_53723137 "0/0" "0/0" NA
## HiC_scaffold_18_54496637 "0/0" "0|1" "0/0"
## HiC_scaffold_18_55294388 "0/0" "1/1" "0/0"
## HiC_scaffold_19_279726 NA "1/1" "0/1"
## HiC_scaffold_19_6426572 NA "1/1" "0/0"
## HiC_scaffold_19_6575887 "1|1" "0/0" "0/0"
## HiC_scaffold_19_7755254 "0/1" "0/1" "0/0"
## HiC_scaffold_19_9301421 "0/1" "0|1" "0|1"
## HiC_scaffold_19_9357388 "0/0" "1|1" "1|1"
## HiC_scaffold_19_9778841 "0/1" "0/0" "1/1"
## HiC_scaffold_19_10928976 "0/0" "0|1" NA
## HiC_scaffold_19_10928980 "0/0" "0|1" NA
## HiC_scaffold_19_10928982 "1|1" "0|1" "0/0"
## HiC_scaffold_19_11106347 "1|1" "0/0" "0/1"
## HiC_scaffold_19_11590139 "1/1" "0/1" "0/1"
## HiC_scaffold_19_11665300 "1/1" "1/1" "1/1"
## HiC_scaffold_19_14793640 "1/1" "0/0" "1/1"
## HiC_scaffold_19_22112743 "1|1" "0/0" "0/0"
## HiC_scaffold_19_25473671 "1/1" "1/1" "1/1"
## HiC_scaffold_19_25473692 "0/1" "0/1" "1/1"
## HiC_scaffold_19_28110829 NA "0/0" "0/1"
## HiC_scaffold_19_28465002 "0/0" "1/1" "1/1"
## HiC_scaffold_19_28465167 "0|1" "1|1" NA
## HiC_scaffold_19_30106869 "0/0" "0/0" "0|1"
## HiC_scaffold_19_52538858 "1/1" "1/1" "1/1"
## HiC_scaffold_19_52596196 "1|1" "0/0" "0/0"
## HiC_scaffold_19_53482993 "1/1" "0/1" "0/0"
## HiC_scaffold_19_54312637 "1/1" "1/1" "1|1"
## HiC_scaffold_19_59345841 "1|1" "0/0" "0|1"
## HiC_scaffold_2_3296144 "1|1" NA NA
## HiC_scaffold_2_3418589 "0/0" NA "1/1"
## HiC_scaffold_2_3864060 "1|1" NA "1/1"
## HiC_scaffold_2_4104755 "0|2" NA "0|2"
## HiC_scaffold_2_4104758 "0|2" NA "0|2"
## HiC_scaffold_2_8316721 "0|1" "0/0" "0/0"
## HiC_scaffold_2_9098999 "0/1" "0/0" "0/1"
## HiC_scaffold_2_10457537 "0/0" "0/0" NA
## HiC_scaffold_2_19048125 "1/1" "0/0" "1/1"
## HiC_scaffold_2_21748201 "1/1" "0/0" NA
## HiC_scaffold_2_33187764 "1|1" "0/0" "0/0"
## HiC_scaffold_2_33187770 "1|1" "0/0" "0/0"
## HiC_scaffold_2_33187959 "0/1" "0/0" "1/1"
## HiC_scaffold_2_41603929 "0/1" "0/0" "0/0"
## HiC_scaffold_2_52233191 "0/1" "0/0" "0/0"
## HiC_scaffold_2_52400748 "0/0" "1/1" "0/1"
## HiC_scaffold_2_52403793 "1|1" "1|1" "0/0"
## HiC_scaffold_2_52799130 "0/1" "0/1" "0/1"
## HiC_scaffold_20_10332897 "0/0" "0/1" "0/1"
## HiC_scaffold_20_17198418 NA "1|1" "1|1"
## HiC_scaffold_20_17915398 "1|1" "1|1" NA
## HiC_scaffold_20_18872955 "0/0" "0/0" "0/0"
## HiC_scaffold_20_19055301 "1/1" "0/0" NA
## HiC_scaffold_20_19150094 "1/1" NA "1/1"
## HiC_scaffold_20_20651022 "1|1" NA NA
## HiC_scaffold_20_22651296 "1/1" NA "1/1"
## HiC_scaffold_21_2009156 "0/1" NA "0/0"
## HiC_scaffold_21_2435648 "0/0" "0/0" "0/0"
## HiC_scaffold_21_7164210 "0|1" "0|1" "1|1"
## HiC_scaffold_21_9786512 "0/0" "0/0" NA
## HiC_scaffold_21_12424922 "1/1" "1/1" "1/1"
## HiC_scaffold_21_17966833 "1/1" "0/1" "1/1"
## HiC_scaffold_21_19025429 "0/1" "0/0" "0/1"
## HiC_scaffold_21_20058318 NA "0/1" NA
## HiC_scaffold_21_20562855 "0/0" "0/0" "0/1"
## HiC_scaffold_21_20661860 NA "1|1" "1/1"
## HiC_scaffold_21_20895395 NA "0/0" NA
## HiC_scaffold_21_21158811 "1|1" "2|2" "1|1"
## HiC_scaffold_21_22250857 "0/1" "0/1" "0/1"
## HiC_scaffold_21_22250866 "0|1" "0/0" "0/0"
## HiC_scaffold_21_22257737 NA "1/1" "0/0"
## HiC_scaffold_21_22644667 "0/0" "0/0" "1|1"
## HiC_scaffold_21_22644673 "0/0" "0/0" "1|1"
## HiC_scaffold_21_22666888 "1/1" "0/1" "0/0"
## HiC_scaffold_21_23905416 "0/0" "0/0" "0/0"
## HiC_scaffold_21_23981651 "0/0" "0/0" "0/0"
## HiC_scaffold_21_24287068 NA "1/1" "0/0"
## HiC_scaffold_21_30798434 "0/0" "0/0" "0/0"
## HiC_scaffold_21_35006232 "1/1" "1/1" "1/1"
## HiC_scaffold_21_35779294 "1/1" "0/0" "1/1"
## HiC_scaffold_22_124910 "0/1" "0/0" "1/1"
## HiC_scaffold_22_751023 "1|1" "1/1" "1/1"
## HiC_scaffold_22_1042644 "0/0" "0/0" "1|1"
## HiC_scaffold_22_1044708 "0/1" NA "1/1"
## HiC_scaffold_22_2174911 "0/0" "0/0" "1/1"
## HiC_scaffold_22_3431122 "0/0" "0/0" "0/0"
## HiC_scaffold_22_3446787 "0|1" "0|1" "1|1"
## HiC_scaffold_22_3451756 "0/0" NA "1|1"
## HiC_scaffold_22_3720435 "1/1" "0/0" "0/0"
## HiC_scaffold_22_4065466 "0/1" "0/0" "0/0"
## HiC_scaffold_22_4739889 "0/0" NA "0/0"
## HiC_scaffold_22_4918263 NA "0|1" "0|1"
## HiC_scaffold_22_5750008 "0/1" "0/1" "1/1"
## HiC_scaffold_22_5769942 "0|1" "1|1" "0/0"
## HiC_scaffold_22_28264522 "1|1" NA "1|1"
## HiC_scaffold_22_28265115 NA "0/0" "1/1"
## HiC_scaffold_22_29205851 "1/1" "0/1" "0/1"
## HiC_scaffold_22_29822340 "0/1" "0/0" "1/1"
## HiC_scaffold_22_30797357 "0/0" "0/0" "1/1"
## HiC_scaffold_22_32042610 "0/0" "1|1" "1|1"
## HiC_scaffold_23_11215327 "0/0" NA "0/0"
## HiC_scaffold_23_27081333 "0/1" "1/1" "1/1"
## HiC_scaffold_23_28672255 NA NA "0/0"
## HiC_scaffold_23_29218828 NA "1/1" "0/0"
## HiC_scaffold_23_32528768 "0/1" "0/0" "1|1"
## HiC_scaffold_23_32669383 "0/1" "1/1" "0|1"
## HiC_scaffold_23_33199663 "0/0" "0/0" "0/0"
## HiC_scaffold_23_33245843 "1/1" NA "1/1"
## HiC_scaffold_23_40824545 NA "1|1" "0|1"
## HiC_scaffold_23_41504669 "0/1" "0/0" "0/0"
## HiC_scaffold_24_16622654 "1/1" "0/0" "1/1"
## HiC_scaffold_24_16622681 "1/1" "0/0" "1/1"
## HiC_scaffold_24_19851560 "1/1" "1|1" "0/1"
## HiC_scaffold_24_20590563 NA "1/1" "0/0"
## HiC_scaffold_24_27745754 "0/1" "1/1" "0/0"
## HiC_scaffold_24_28763699 "1|1" "1|1" "0/1"
## HiC_scaffold_24_28763703 "0/1" "1|1" "0/1"
## HiC_scaffold_25_4135969 "0/0" "0/1" "1/1"
## HiC_scaffold_25_4201677 "0/0" "0/1" "1/1"
## HiC_scaffold_25_5872831 "1/1" "0|1" NA
## HiC_scaffold_25_6879627 "1/1" "1/1" NA
## HiC_scaffold_25_8172813 "1/1" "1/1" "1/1"
## HiC_scaffold_25_9969507 "0/0" "1|1" "0/1"
## HiC_scaffold_25_10691336 "1/1" "1/1" "0/0"
## HiC_scaffold_25_21286462 "1|1" "1/1" "0/1"
## HiC_scaffold_26_4086662 "1|1" "0/1" "0/0"
## HiC_scaffold_26_7539671 "0/0" "0/0" "0|1"
## HiC_scaffold_26_8348511 NA NA "1/1"
## HiC_scaffold_26_9043748 "1|1" NA "1|1"
## HiC_scaffold_26_9045655 "1|1" NA NA
## HiC_scaffold_26_11253181 "0/1" "0/0" "0/0"
## HiC_scaffold_26_17828344 "0/1" "1/1" "1/1"
## HiC_scaffold_26_17932520 "1/1" "0/1" "1/1"
## HiC_scaffold_26_17941459 NA "0/0" NA
## HiC_scaffold_26_17960877 "1/1" "1/1" "0|1"
## HiC_scaffold_26_18284041 NA "0/0" "0/1"
## HiC_scaffold_26_18288701 NA "1|1" "1|1"
## HiC_scaffold_26_18294422 "1|1" "0|1" NA
## HiC_scaffold_26_21307365 "1/1" "1/1" "1/1"
## HiC_scaffold_26_22159924 "1/1" "0/0" "1/1"
## HiC_scaffold_26_22161535 "1/1" "0/0" NA
## HiC_scaffold_26_24794176 "1/1" "1/1" NA
## HiC_scaffold_26_28538113 "0|1" NA "1|1"
## HiC_scaffold_26_29031357 "1/1" "1/1" "1/1"
## HiC_scaffold_26_29163462 "0/0" "0/0" "0/1"
## HiC_scaffold_26_42631018 "1/1" NA "0/0"
## HiC_scaffold_26_42634814 "0/0" "1/1" "1/1"
## HiC_scaffold_26_43483190 "1/1" "0/1" "0/0"
## HiC_scaffold_26_49955889 "1/1" "1/1" NA
## HiC_scaffold_26_58342510 NA "0/0" "1|1"
## HiC_scaffold_27_1496120 "1|1" "0/0" "0/0"
## HiC_scaffold_27_1947057 "0/1" "1/1" "0|1"
## HiC_scaffold_27_2359058 NA "0/1" "0/0"
## HiC_scaffold_27_2699645 "0/0" "0/0" "1/1"
## HiC_scaffold_27_4425475 "1|1" "0/0" "0|1"
## HiC_scaffold_27_7539469 "0/2" "0/0" "0/0"
## HiC_scaffold_27_7777122 "0/1" "1|1" "0/0"
## HiC_scaffold_27_16657070 "1/1" "0/0" "1/1"
## HiC_scaffold_27_24539255 "1|1" "0/0" "0|1"
## HiC_scaffold_27_34642359 "1|1" "0/0" "1|1"
## HiC_scaffold_27_34647277 "0/0" "0/0" "0/0"
## HiC_scaffold_27_35380535 "1/1" NA "1/1"
## HiC_scaffold_27_35383230 NA "0/0" "0/0"
## HiC_scaffold_28_21261390 NA "0/0" "1|1"
## HiC_scaffold_28_24490442 "0/0" "1/1" "1|1"
## HiC_scaffold_28_25601927 NA "1/1" "1/1"
## HiC_scaffold_28_31793968 "0/0" "0/0" "0/1"
## HiC_scaffold_28_32126687 "2|2" "0/0" "0/0"
## HiC_scaffold_28_34779518 "1/1" NA "0/0"
## HiC_scaffold_28_36042491 "1/1" "0/0" "0/0"
## HiC_scaffold_28_36692361 "0/0" "0/0" "1/1"
## HiC_scaffold_28_38672993 "1|1" "0/1" NA
## HiC_scaffold_28_39640526 "0/0" "0/1" "1/1"
## HiC_scaffold_28_40169242 "1/1" "0/0" "0/1"
## HiC_scaffold_28_41059640 "1|1" "1|1" "1|1"
## HiC_scaffold_28_42514830 "1|1" "1|1" "1/1"
## HiC_scaffold_28_42601570 "0/0" "1/1" "0/0"
## HiC_scaffold_28_42601585 "0/0" "0/0" "1/1"
## HiC_scaffold_28_43018803 NA "0/0" "0/1"
## HiC_scaffold_28_43036165 NA "1/1" "0/0"
## HiC_scaffold_29_344317 "0/0" "0|1" "0/0"
## HiC_scaffold_29_3811176 "1/1" "1/1" "0/1"
## HiC_scaffold_29_6073993 "1|1" "1/1" "0|1"
## HiC_scaffold_29_6415222 "0/0" "0/0" "0/0"
## HiC_scaffold_29_8224424 "1/1" "0/0" "1/1"
## HiC_scaffold_29_11153624 "0/0" NA NA
## HiC_scaffold_29_11153712 "0/0" NA "0/1"
## HiC_scaffold_29_11167966 "0/1" "0/0" "1/1"
## HiC_scaffold_29_11491468 "0/1" NA "0/0"
## HiC_scaffold_29_12103558 "0/0" "0/1" "0/1"
## HiC_scaffold_29_14279322 "0|1" "1/1" "0/1"
## HiC_scaffold_29_14913907 "0/0" NA "0/0"
## HiC_scaffold_29_16378276 "0/1" "1/1" NA
## HiC_scaffold_29_20635937 "0/0" "0/0" "1/1"
## HiC_scaffold_29_20636787 "0/0" "0/0" "0/1"
## HiC_scaffold_29_22560215 "1/1" "0/1" "0/0"
## HiC_scaffold_29_22561144 "1/1" NA "1/1"
## HiC_scaffold_29_24017849 "0/0" "0/0" "0/0"
## HiC_scaffold_29_31603590 "0/0" "1/1" "0/1"
## HiC_scaffold_3_21670751 "1/1" NA "0/0"
## HiC_scaffold_3_24747014 "0/0" "0/0" "0/1"
## HiC_scaffold_3_27861792 "0/0" "0/0" "1/1"
## HiC_scaffold_3_28057869 NA "0/0" "0/0"
## HiC_scaffold_3_28441436 "0/1" "1/1" "0/0"
## HiC_scaffold_3_28694380 "1/1" "1|1" "0/0"
## HiC_scaffold_3_31361023 "0/1" "0/1" "1/1"
## HiC_scaffold_3_31960572 "0/0" "1|1" "0/0"
## HiC_scaffold_3_32157169 "0/0" NA "0/0"
## HiC_scaffold_3_32159152 "1/1" "1|1" "0/1"
## HiC_scaffold_3_34124237 "0/0" "1/1" "0/0"
## HiC_scaffold_30_14199802 "0/0" "0/0" "0/1"
## HiC_scaffold_30_16052331 NA "0/0" "1/1"
## HiC_scaffold_30_19914075 "0/1" "0/0" "1/1"
## HiC_scaffold_30_20688783 "0/1" "1/1" "0/0"
## HiC_scaffold_30_21446076 "0/0" "0/0" "2/2"
## HiC_scaffold_30_21598563 "0/0" "0/0" "0/0"
## HiC_scaffold_30_22155728 "0/0" "1|1" "1|1"
## HiC_scaffold_31_687411 "0/0" "0/0" "0/1"
## HiC_scaffold_31_3224722 "0/1" "0/0" "1/1"
## HiC_scaffold_31_3574854 "0/0" "0/0" "0/0"
## HiC_scaffold_31_5899551 "1/1" NA "1/1"
## HiC_scaffold_31_5911491 "0/1" "1|1" "0/0"
## HiC_scaffold_31_6297680 "0/0" "0/0" "1/1"
## HiC_scaffold_31_12394016 "0/0" "0/0" "0/0"
## HiC_scaffold_31_12394040 "1|1" "0/0" "0/0"
## HiC_scaffold_31_18612650 "0/0" "1/1" "0/0"
## HiC_scaffold_32_4446859 NA "0/0" "0/0"
## HiC_scaffold_32_5274796 "1/1" "0/0" "1/1"
## HiC_scaffold_32_5275108 "0/1" "1/1" "0/1"
## HiC_scaffold_32_5282358 "1/1" NA "0|1"
## HiC_scaffold_32_5450203 "1|1" "1|1" "0/1"
## HiC_scaffold_32_44200178 "0/0" "1/1" "1/1"
## HiC_scaffold_33_638523 "0/0" "1/1" "0/0"
## HiC_scaffold_33_44489563 "0/1" "1/1" "1/1"
## HiC_scaffold_33_44489988 "1/1" "0/0" "0/0"
## HiC_scaffold_33_47080180 "0/0" "0/0" "1/1"
## HiC_scaffold_33_47495907 "0/0" "0/0" "1|1"
## HiC_scaffold_33_51865876 "0/0" NA NA
## HiC_scaffold_34_1096982 "0/1" "0/0" "1/1"
## HiC_scaffold_34_6091943 "0/0" "0/0" "0/0"
## HiC_scaffold_34_6100160 "0/0" "0/0" "1|1"
## HiC_scaffold_34_24368584 "1/1" "0/0" NA
## HiC_scaffold_35_3233120 "0/1" "0/1" "0/1"
## HiC_scaffold_35_3253574 "1/1" NA NA
## HiC_scaffold_35_5512296 "0/1" "1/1" "0/1"
## HiC_scaffold_35_15114788 "0/1" "1/1" "1/1"
## HiC_scaffold_35_21214090 "0/0" "0/0" "0/0"
## HiC_scaffold_35_21462564 NA NA "1/1"
## HiC_scaffold_35_22746783 "0/0" "0/0" "0/0"
## HiC_scaffold_35_22747085 "0/0" NA "0/0"
## HiC_scaffold_35_23059580 "1/1" "1/1" "1/1"
## HiC_scaffold_35_23158882 "0/1" "1/1" "1/1"
## HiC_scaffold_35_23261143 NA "1/1" "1/1"
## HiC_scaffold_35_24403602 "1|1" "0/0" "1|1"
## HiC_scaffold_35_24403620 "1|1" "0/0" "1|1"
## HiC_scaffold_35_24993986 "1/1" "1/1" "0/1"
## HiC_scaffold_35_24993998 "0|1" "0/1" "0/0"
## HiC_scaffold_36_1538038 "1/1" "1/1" "0/0"
## HiC_scaffold_36_2464728 "1/1" "0|1" NA
## HiC_scaffold_36_5489050 "1/1" "0/1" "0/0"
## HiC_scaffold_36_9673981 "0/1" "0/0" "0/0"
## HiC_scaffold_36_9674127 "1/1" "0/0" "1/1"
## HiC_scaffold_36_9674756 "1/1" "0/0" "1/1"
## HiC_scaffold_36_9676329 "1/1" "1/1" "1/1"
## HiC_scaffold_36_12304516 "1/1" "0/0" NA
## HiC_scaffold_36_12515555 NA "0|1" "0/0"
## HiC_scaffold_36_13092647 NA "0/0" "0/0"
## HiC_scaffold_36_13766994 "1/1" "1/1" "0/0"
## HiC_scaffold_36_14567741 "0/1" "0/1" "0/0"
## HiC_scaffold_36_15530578 "1|1" "1|1" "1|1"
## HiC_scaffold_37_679894 "0/1" "1/1" NA
## HiC_scaffold_37_916693 "0/0" "0/0" "0/0"
## HiC_scaffold_37_928146 "0/0" "0/0" "1/1"
## HiC_scaffold_37_1256768 "0/0" "1|1" NA
## HiC_scaffold_37_1270034 "1/1" "1/1" "0/1"
## HiC_scaffold_37_1770997 "0/0" "0/0" "0/0"
## HiC_scaffold_37_1798298 "0/0" "1/1" "0/1"
## HiC_scaffold_37_2010342 "1|1" "0/0" "0/0"
## HiC_scaffold_37_2141526 "0/0" "1/1" "0/0"
## HiC_scaffold_37_3952190 "0/0" "0/0" "1|1"
## HiC_scaffold_37_3952215 "0/0" "0/0" "1|1"
## HiC_scaffold_37_9915037 "0/0" "0/1" "0/1"
## HiC_scaffold_38_5383430 NA "0/1" NA
## HiC_scaffold_38_5668363 "0/0" NA "0/0"
## HiC_scaffold_38_5879849 "0/0" "1/1" "0/0"
## HiC_scaffold_38_5880155 "1/1" "0/0" "0/0"
## HiC_scaffold_38_10612790 NA "0/1" "1/1"
## HiC_scaffold_38_11940240 "0|1" "0/0" "0|1"
## HiC_scaffold_38_12878826 "1/1" "0/0" "0|1"
## HiC_scaffold_38_12959698 "0/0" "0/1" NA
## HiC_scaffold_38_13087368 "1/1" "1/1" "1/1"
## HiC_scaffold_38_13480648 "0|1" "0/0" "0|1"
## HiC_scaffold_38_13965243 "1/1" "1/1" "1/1"
## HiC_scaffold_38_14089955 "0/0" "1/1" "1/1"
## HiC_scaffold_38_14408072 "1|1" "0/0" "0/0"
## HiC_scaffold_38_14931216 NA "0/1" "1|1"
## HiC_scaffold_38_14978356 "0|1" "1|1" "0/0"
## HiC_scaffold_38_14978367 "0|1" "1|1" "0/0"
## HiC_scaffold_38_15292863 "0/0" "0/0" "0/1"
## HiC_scaffold_38_15306135 "1|1" "0/0" "0|1"
## HiC_scaffold_38_16077506 "1|1" "1|1" "1|1"
## HiC_scaffold_38_16138965 "0/1" "0/0" "0/0"
## HiC_scaffold_38_16226040 "1/1" "1/1" "0/1"
## HiC_scaffold_39_1393769 "0/1" "0/0" "0/0"
## HiC_scaffold_39_2014970 "0/1" NA "0/0"
## HiC_scaffold_39_2014982 "0|1" NA "0/0"
## HiC_scaffold_39_2014985 "0|1" "0/1" "0/0"
## HiC_scaffold_39_2426443 "0/1" NA "0/0"
## HiC_scaffold_39_2485330 "0/0" NA "1/1"
## HiC_scaffold_39_3350506 "0/0" "1|1" NA
## HiC_scaffold_39_5897388 "0/0" "0/0" "1|1"
## HiC_scaffold_39_17631133 "0/1" "1/1" "0/1"
## HiC_scaffold_4_12107187 "1/1" "0/0" "0/0"
## HiC_scaffold_4_18241670 "0/0" "1|1" "1|1"
## HiC_scaffold_4_18241723 "0/0" "1|1" "1|1"
## HiC_scaffold_4_22418566 "1|1" "0/0" "0/0"
## HiC_scaffold_4_27899990 "0/1" "0/0" NA
## HiC_scaffold_4_35575118 "1/1" "0|1" "0|1"
## HiC_scaffold_4_38000967 "0/1" "1/1" "1/1"
## HiC_scaffold_4_50654021 "0/0" "0/0" "0/0"
## HiC_scaffold_40_2243415 NA "0/0" "0/0"
## HiC_scaffold_40_3000572 "1/1" "1/1" "0/0"
## HiC_scaffold_40_3014177 "0|1" "1/1" "1|1"
## HiC_scaffold_40_3027900 "0/0" NA NA
## HiC_scaffold_40_3143834 "1/1" "0/0" "0/0"
## HiC_scaffold_40_3843942 "0/0" "2|2" "0|1"
## HiC_scaffold_40_3847620 "0/0" "1|1" "1|1"
## HiC_scaffold_40_3891007 "1/1" "0/1" "0/0"
## HiC_scaffold_40_3920667 "2/2" "2/2" "1|1"
## HiC_scaffold_40_4177963 "0/0" "0/0" "0/0"
## HiC_scaffold_40_4819107 "0/0" "1/1" "0/1"
## HiC_scaffold_40_4819834 "1/1" "0/0" "0/0"
## HiC_scaffold_40_5788271 NA "0/1" "1|1"
## HiC_scaffold_40_5965269 "0/0" "1|1" "0/0"
## HiC_scaffold_40_6204154 "1/1" "0/0" "1/1"
## HiC_scaffold_40_8387917 "0/0" "0/1" NA
## HiC_scaffold_41_3235384 "0/0" "1/1" "0/0"
## HiC_scaffold_41_3583000 "0/0" "0/0" "1/1"
## HiC_scaffold_41_5334504 "1/1" NA NA
## HiC_scaffold_41_5387631 "0/1" "0/0" "0/0"
## HiC_scaffold_41_6423426 "0/0" "1/1" "1/1"
## HiC_scaffold_41_14359947 "0/0" "0/1" "0/1"
## HiC_scaffold_41_24007593 "0/0" "0/0" NA
## HiC_scaffold_41_26225447 "1/1" "1|1" "0/0"
## HiC_scaffold_41_28626484 "1/1" "1/1" "1/1"
## HiC_scaffold_41_28660620 "0|1" "1|1" "0/0"
## HiC_scaffold_41_31007688 "0/0" "1/1" "0/1"
## HiC_scaffold_42_1131084 "1/1" NA "0/0"
## HiC_scaffold_42_1818523 "0/0" "0/0" "0/0"
## HiC_scaffold_42_2165002 "0/0" "0/1" "0/0"
## HiC_scaffold_42_2711332 "0/0" "0/0" "0/0"
## HiC_scaffold_42_6142699 "0/0" "1/1" "0/1"
## HiC_scaffold_42_6744976 "1/1" "0/1" "0/0"
## HiC_scaffold_42_8066919 "1|1" "1/1" "0|1"
## HiC_scaffold_42_8068292 "0/0" "0/0" "0/1"
## HiC_scaffold_42_12487888 "0/0" "0/0" NA
## HiC_scaffold_42_41366687 "0/1" NA NA
## HiC_scaffold_42_47313337 "2|2" "0/0" NA
## HiC_scaffold_42_47313338 "2|2" "0/0" "0/0"
## HiC_scaffold_42_50784971 "0/0" "0/0" "1|1"
## HiC_scaffold_42_50784977 "0/0" "0/0" "1|1"
## HiC_scaffold_42_50784981 "1/1" "1/1" "0/0"
## HiC_scaffold_42_51916989 "1/1" "0/0" "1/1"
## HiC_scaffold_43_3842003 "1/1" "1/1" NA
## HiC_scaffold_43_14140861 "1|1" "0/0" "1|1"
## HiC_scaffold_43_15053605 "1/1" "0|1" "1/1"
## HiC_scaffold_43_17289945 "0/0" "1|1" "0/1"
## HiC_scaffold_43_29967704 "1/1" NA NA
## HiC_scaffold_43_35745831 "0/0" "1|1" "0|1"
## HiC_scaffold_43_37627949 "1|1" "0|1" "1|1"
## HiC_scaffold_43_37628126 "1/1" "1/1" NA
## HiC_scaffold_43_44017118 "0/0" "1/1" "0/0"
## HiC_scaffold_43_55124138 "0/1" "1|1" NA
## HiC_scaffold_43_60107326 "0/0" "0/0" "0/0"
## HiC_scaffold_43_61359386 "0/1" "1/1" "0/0"
## HiC_scaffold_43_61702593 "0/0" "0/0" "0/0"
## HiC_scaffold_43_61702606 "0/0" "0/0" "0/0"
## HiC_scaffold_43_61702721 "1|1" "0/1" "1|1"
## HiC_scaffold_43_61702738 "0/0" "0/1" "0/0"
## HiC_scaffold_43_62511703 "1|1" "1|1" "1|1"
## HiC_scaffold_43_64069457 NA "0/0" NA
## HiC_scaffold_43_64577269 "1/1" "0/1" "0/0"
## HiC_scaffold_44_1920144 "1|1" "0/0" "1|1"
## HiC_scaffold_44_2148035 "0/0" "0/0" "1/1"
## HiC_scaffold_44_2568167 "0/0" "0/0" "0/0"
## HiC_scaffold_45_4180070 "0/0" "0/1" NA
## HiC_scaffold_45_4797754 "0/0" "0/0" "1/2"
## HiC_scaffold_45_5911123 "1|1" "0/0" "0/0"
## HiC_scaffold_45_6958990 "1/1" "0/0" "0/1"
## HiC_scaffold_45_8516216 "1|1" "0/0" "0/1"
## HiC_scaffold_45_10191213 "1/1" "0/0" "1/1"
## HiC_scaffold_45_12005885 "1/1" "0/1" "0/0"
## HiC_scaffold_45_12006766 "0/0" "0|1" "0/0"
## HiC_scaffold_45_24736172 NA "0/1" "0/0"
## HiC_scaffold_45_24739830 "1|1" "1|1" "0/0"
## HiC_scaffold_46_9691567 "0|1" "0|1" NA
## HiC_scaffold_46_17380257 "0/0" "0/1" "1/1"
## HiC_scaffold_46_18387147 "0/0" "0/0" "0/0"
## HiC_scaffold_46_37092355 "0|1" NA "1|1"
## HiC_scaffold_46_39183624 NA "0/0" "1/1"
## HiC_scaffold_46_39390547 "1|1" NA "1/1"
## HiC_scaffold_46_42964941 "0/0" "0/0" "0/0"
## HiC_scaffold_46_42986653 "0/1" "0/0" "0/0"
## HiC_scaffold_46_52074364 "1|1" "1|1" "1|1"
## HiC_scaffold_46_54255667 "1/1" "1/1" "1/1"
## HiC_scaffold_47_3750532 "0/0" "0/0" "1/1"
## HiC_scaffold_47_3751345 "1/1" NA "0/0"
## HiC_scaffold_47_15400639 NA "1|1" "1|1"
## HiC_scaffold_47_24072414 "0/0" "0/1" "0/0"
## HiC_scaffold_47_25273825 "0/0" "0/0" "0/1"
## HiC_scaffold_48_8752752 "0|2" "0/0" "0/0"
## HiC_scaffold_48_10765920 "0/0" "0/0" "0/0"
## HiC_scaffold_48_16077918 "1|1" "0/0" "0|1"
## HiC_scaffold_48_16077940 "1|1" "1/1" "0|1"
## HiC_scaffold_48_16411609 "1/1" "1/1" "1/1"
## HiC_scaffold_48_19972580 "0/1" "1/1" "0/1"
## HiC_scaffold_48_23493079 "0|1" "0/0" "1|1"
## HiC_scaffold_48_23597210 "0/1" "0/0" "0/0"
## HiC_scaffold_48_24478493 "0/0" NA "1/1"
## HiC_scaffold_48_24881148 "1/1" "1/1" "0/0"
## HiC_scaffold_48_25865723 "1/1" NA "1/1"
## HiC_scaffold_48_25984068 "0/0" "1|1" "0/0"
## HiC_scaffold_48_25989079 "1/1" "1/1" "0/1"
## HiC_scaffold_48_30601375 "0/0" "0/0" "0/0"
## HiC_scaffold_48_31662115 "0/1" NA "1/1"
## HiC_scaffold_48_41971562 "0/0" NA "0/1"
## HiC_scaffold_49_3392801 NA "1|1" "0/0"
## HiC_scaffold_49_6101692 "1/1" NA "0/0"
## HiC_scaffold_49_7996315 "0/0" "0/1" "1/1"
## HiC_scaffold_49_9470474 "1/1" "0/0" "0/1"
## HiC_scaffold_49_9886007 NA "0/1" NA
## HiC_scaffold_49_12592113 "1/1" "0/1" "0/0"
## HiC_scaffold_49_12741575 "1/1" NA "0/0"
## HiC_scaffold_49_15135019 NA "1/1" "1|1"
## HiC_scaffold_49_25906219 "1|1" "1|1" "0/0"
## HiC_scaffold_49_26614199 "0/0" "0/0" "0/1"
## HiC_scaffold_49_26655554 "0/0" "0/1" "0/0"
## HiC_scaffold_49_37568341 "0/1" "1/1" "1|1"
## HiC_scaffold_49_37568353 "0/1" "1/1" "1|1"
## HiC_scaffold_49_40002255 "0/0" "0/0" "0/0"
## HiC_scaffold_49_40003229 "0/0" "1|1" "0/0"
## HiC_scaffold_49_42966376 "1/1" "0/0" "1/1"
## HiC_scaffold_5_801252 "0/0" NA "1/1"
## HiC_scaffold_5_1446603 "0/0" "1|1" "0|1"
## HiC_scaffold_5_1446611 "0/0" "1|1" "0|1"
## HiC_scaffold_5_1530759 "1|1" "0/0" "0|1"
## HiC_scaffold_5_1539275 "2|2" "0/0" "0/0"
## HiC_scaffold_5_1789576 "0/0" "1|1" "0/0"
## HiC_scaffold_5_1808197 NA "1/1" "1/1"
## HiC_scaffold_5_1808204 "0/0" "0/0" "0/0"
## HiC_scaffold_5_1943895 "1|1" "1|1" "0/0"
## HiC_scaffold_5_1944469 "0|1" "1/1" "0/1"
## HiC_scaffold_5_2857283 "1/1" NA NA
## HiC_scaffold_5_4061378 "0/0" "0/0" "1/1"
## HiC_scaffold_5_4340647 "1|1" "1|1" "0/1"
## HiC_scaffold_5_4435246 "0/1" "0/1" "1/1"
## HiC_scaffold_5_8868783 "1/1" "0/0" "0/0"
## HiC_scaffold_50_4315969 "0/1" NA "0/0"
## HiC_scaffold_50_11652296 "1|1" "1/1" "1/1"
## HiC_scaffold_50_11657309 "1/1" NA "1/1"
## HiC_scaffold_50_15521027 "0/1" "0/1" "1/1"
## HiC_scaffold_50_21050962 "0/1" "1/1" NA
## HiC_scaffold_50_23686202 "0/1" NA "1|1"
## HiC_scaffold_50_27393462 "0/0" "0/0" "1|1"
## HiC_scaffold_50_42586883 "0/0" "0/0" "0/0"
## HiC_scaffold_50_45087211 "1/1" "0/1" NA
## HiC_scaffold_50_49796550 "1/1" NA NA
## HiC_scaffold_50_54383367 "1|1" "0/1" "0/0"
## HiC_scaffold_50_63318678 "0/0" "0/0" "1/1"
## HiC_scaffold_51_3521000 "0/0" "1/1" NA
## HiC_scaffold_51_4681905 NA "1/1" "1/1"
## HiC_scaffold_51_6305599 "2|2" "2|2" "0/0"
## HiC_scaffold_51_8530818 "0/0" NA "1/1"
## HiC_scaffold_51_11653312 "0/0" NA "0/1"
## HiC_scaffold_51_13138547 NA "1/1" NA
## HiC_scaffold_51_14457091 "0/0" "1|1" "1|1"
## HiC_scaffold_51_15512668 "1/1" "0/1" "1|1"
## HiC_scaffold_51_17816346 "0/0" "1/1" "0|1"
## HiC_scaffold_51_19997934 "1|1" "1|1" "1|1"
## HiC_scaffold_51_19997936 "1|1" "1|1" "1|1"
## HiC_scaffold_51_20870773 "0/1" "0/0" "1/1"
## HiC_scaffold_51_26660104 "0/0" NA NA
## HiC_scaffold_51_40727521 NA "1|1" "0/0"
## HiC_scaffold_51_40892841 "0/0" NA "0/1"
## HiC_scaffold_51_41717519 "0/0" "0/1" "1/1"
## HiC_scaffold_51_42547638 "1/1" "1/1" "0/0"
## HiC_scaffold_52_3335804 NA "0/0" "0/1"
## HiC_scaffold_52_4149130 "0/1" NA "1/1"
## HiC_scaffold_52_6893679 "1/1" "1|1" NA
## HiC_scaffold_52_13155416 "1/1" "1/1" "1/1"
## HiC_scaffold_52_13155437 "1|1" "1|1" "1|1"
## HiC_scaffold_52_13155442 "1|1" "1|1" "1|1"
## HiC_scaffold_52_14885688 "0/0" "1/1" "1/1"
## HiC_scaffold_52_14895078 "1/1" "1/1" "1/1"
## HiC_scaffold_52_15141791 "1/1" "0/0" "0/1"
## HiC_scaffold_52_15743051 "0/0" "1|1" "0/1"
## HiC_scaffold_52_15760201 "1/1" NA "0/1"
## HiC_scaffold_52_15834589 "0/0" "0/0" "0/1"
## HiC_scaffold_52_15841769 "0/0" NA "0/1"
## HiC_scaffold_52_15862421 "1|1" NA "0|1"
## HiC_scaffold_52_15970970 "0/0" "1/1" "1/1"
## HiC_scaffold_52_16275237 "0/0" NA "0/0"
## HiC_scaffold_52_16275240 "1|1" NA "1|1"
## HiC_scaffold_52_16275290 "1|1" "0/0" "1|1"
## HiC_scaffold_52_16524164 "0/0" "0/0" "0/0"
## HiC_scaffold_52_16524572 "1/1" NA "1/1"
## HiC_scaffold_52_16525647 "0/0" "1/1" "0/0"
## HiC_scaffold_52_16637047 "0/0" "0/0" "0/0"
## HiC_scaffold_52_17202127 "0/0" NA NA
## HiC_scaffold_52_17207724 NA NA "1/1"
## HiC_scaffold_52_17508820 "0/0" "0/0" "1|1"
## HiC_scaffold_52_17547593 "1/1" NA "1/1"
## HiC_scaffold_52_17551239 "1/1" "0/1" "1|1"
## HiC_scaffold_52_17560696 "0|1" NA "0|1"
## HiC_scaffold_52_17560699 "0|1" NA "0|1"
## HiC_scaffold_52_17741250 "1/1" NA "0|1"
## HiC_scaffold_52_17742260 "0/1" "1|1" NA
## HiC_scaffold_52_18340578 "0/0" "1/1" "0/0"
## HiC_scaffold_52_18415911 "1/1" "0/0" "0/0"
## HiC_scaffold_52_22189517 "1/1" "1/1" "0/0"
## HiC_scaffold_52_22526592 "0/1" "1/1" "1/1"
## HiC_scaffold_52_26393471 NA NA "0/1"
## HiC_scaffold_52_26799380 "0/1" "0/0" "0/0"
## HiC_scaffold_52_31871931 "1/1" "0/1" "1/1"
## HiC_scaffold_52_31874283 "0/1" "1|1" "1/1"
## HiC_scaffold_52_31874287 "0/0" "1|1" "0/0"
## HiC_scaffold_52_32161053 "1|1" "1|1" "1|1"
## HiC_scaffold_52_33165557 "0/1" "0/1" "1/1"
## HiC_scaffold_52_33897620 "0/1" "0/0" "1/1"
## HiC_scaffold_52_34763156 "0/1" "1/1" NA
## HiC_scaffold_52_34763171 "0/1" "0/0" "0/0"
## HiC_scaffold_52_35174755 "0/1" "0/0" "1|1"
## HiC_scaffold_52_35608453 "0/0" "0/0" "0/0"
## HiC_scaffold_52_35608470 "0/0" "0/0" "0/0"
## HiC_scaffold_52_39464728 "1|1" "0/0" "0/0"
## HiC_scaffold_52_42141354 "0/0" "1|1" "1|1"
## HiC_scaffold_52_44675725 "0/1" NA "1/1"
## HiC_scaffold_52_49935920 "0/0" "0/0" "0/1"
## HiC_scaffold_53_21789524 "0/0" "0/0" NA
## HiC_scaffold_53_25168042 "1/1" "0/0" NA
## HiC_scaffold_53_26398989 "0|1" "0/0" "0|1"
## HiC_scaffold_53_26398992 "0|1" "0/0" "0|1"
## HiC_scaffold_53_26398994 "0|1" "0/0" "0|1"
## HiC_scaffold_53_26549665 "0/0" NA "1/1"
## HiC_scaffold_53_29227676 "1|1" "0|1" "0|1"
## HiC_scaffold_53_31250349 "1/1" "1/1" "1/1"
## HiC_scaffold_54_530581 "0/0" "1|1" NA
## HiC_scaffold_54_794095 "1|1" "0/0" "0/0"
## HiC_scaffold_54_1171109 "0/0" "1|1" NA
## HiC_scaffold_54_1378956 "0/0" "0/1" NA
## HiC_scaffold_54_1380539 "1/1" "1/1" "0/0"
## HiC_scaffold_54_3045015 "1/1" "1/1" "0/0"
## HiC_scaffold_54_3185987 "0/0" "0/1" "1/1"
## HiC_scaffold_54_4401098 "1|1" "0/0" "1|1"
## HiC_scaffold_54_5595903 "0/1" "1/1" "1/1"
## HiC_scaffold_54_5595921 "0|1" "1/1" "0/0"
## HiC_scaffold_54_5595928 "0|1" "0/0" "0/0"
## HiC_scaffold_54_5595949 "0/0" "1/1" "0/0"
## HiC_scaffold_54_6649662 "0/0" "1/1" "0/0"
## HiC_scaffold_54_8036734 "0/0" "0|1" "0|1"
## HiC_scaffold_54_9206614 "0/0" "0/0" NA
## HiC_scaffold_54_35913192 "0/1" "0/0" "0/0"
## HiC_scaffold_54_35913282 NA "1|1" "0/0"
## HiC_scaffold_54_35913283 NA "1|1" "0/0"
## HiC_scaffold_55_1260491 "1/1" "0/1" "1/1"
## HiC_scaffold_55_3254027 "1/1" "0/1" "0/0"
## HiC_scaffold_55_3281985 "0/0" NA "1|1"
## HiC_scaffold_55_5409544 "1/1" "0/0" "0/0"
## HiC_scaffold_55_5411094 NA "1|1" "1|1"
## HiC_scaffold_55_5411115 NA "1/1" "1|1"
## HiC_scaffold_55_18121799 "1/1" NA NA
## HiC_scaffold_55_19605809 "0|1" "0/0" "1|1"
## HiC_scaffold_55_19605817 "0|1" "0/0" "1|1"
## HiC_scaffold_55_19605821 "0|1" "1/1" "1|1"
## HiC_scaffold_55_20195204 "1/1" "0/0" "0/0"
## HiC_scaffold_55_20886967 "1/1" "0/0" NA
## HiC_scaffold_55_23222937 "0/1" "1/1" "0/0"
## HiC_scaffold_55_23626331 "0/0" "0/1" "0/0"
## HiC_scaffold_55_24539590 "1/1" "1/1" NA
## HiC_scaffold_55_24585939 "0/1" "0/0" NA
## HiC_scaffold_55_34174151 "1/1" "0/0" "1/1"
## HiC_scaffold_56_17874332 NA "1/1" "1/1"
## HiC_scaffold_56_18635259 "0/0" "0/0" "1|1"
## HiC_scaffold_56_23654344 "0/0" NA "1/1"
## HiC_scaffold_56_35850533 "0/0" "0/0" "0/1"
## HiC_scaffold_56_35850539 "0/0" "0/0" "0/1"
## HiC_scaffold_56_40813556 "1/1" "1/1" "0/1"
## HiC_scaffold_56_53211633 "0/0" "0/0" "0/0"
## HiC_scaffold_56_60070829 "0/1" "1/1" "0/1"
## HiC_scaffold_56_73286017 "0/1" NA "1/1"
## HiC_scaffold_56_73829442 "0/2" "0/0" "0/0"
## HiC_scaffold_56_73829443 "0/2" "0/0" "0/0"
## HiC_scaffold_56_76060304 "1|1" "1|1" "1|1"
## HiC_scaffold_57_25306408 "1/1" "0/0" NA
## HiC_scaffold_57_29222385 "1/1" "0/0" "0/0"
## HiC_scaffold_57_29592432 "0/0" "0/0" "1/1"
## HiC_scaffold_57_31472698 "0/0" NA "0|1"
## HiC_scaffold_57_32371742 "1/1" "1/1" "1/1"
## HiC_scaffold_57_36495072 "0/0" "0/1" "0/1"
## HiC_scaffold_57_37286264 "0/0" "1/1" "1/1"
## HiC_scaffold_57_38537415 "0/0" "0/0" "0/0"
## HiC_scaffold_57_45438854 "1/1" NA "2|2"
## HiC_scaffold_57_52856874 "0/0" NA "0/1"
## HiC_scaffold_57_53575355 "1/1" "0/1" "0/1"
## HiC_scaffold_57_55856783 "1/1" "0/0" "0/0"
## HiC_scaffold_58_1362614 "0/0" "1/1" "0/0"
## HiC_scaffold_58_1432845 "1/1" "1|1" NA
## HiC_scaffold_58_1541720 "2/2" "1/2" "0/0"
## HiC_scaffold_58_2777120 "1/1" "0/0" NA
## HiC_scaffold_58_2973169 "1/1" NA NA
## HiC_scaffold_58_3243043 "0/0" "1/1" "0/0"
## HiC_scaffold_58_4035282 "1/1" "0/0" NA
## HiC_scaffold_58_5442157 "1|1" "0/0" "0/0"
## HiC_scaffold_58_8004631 "0/1" "0/1" "0/0"
## HiC_scaffold_58_8058998 "0/0" "0/0" "1/1"
## HiC_scaffold_58_8932837 "0/0" "1/1" "0/1"
## HiC_scaffold_58_14814944 "0/0" "0/0" "0/0"
## HiC_scaffold_58_15639988 "0/0" "1/1" NA
## HiC_scaffold_58_15707198 NA "0/1" NA
## HiC_scaffold_58_15707258 "1/1" NA "0/0"
## HiC_scaffold_58_15710623 "0/0" "0/1" "1/1"
## HiC_scaffold_58_19155063 "0/1" NA NA
## HiC_scaffold_58_20224050 "1/1" NA "1/1"
## HiC_scaffold_58_38475355 "1/1" NA "1/1"
## HiC_scaffold_59_3979055 "0/0" "0/1" "0/1"
## HiC_scaffold_59_5071810 "1|1" "0/0" "0/0"
## HiC_scaffold_59_5349936 "1/1" NA "1/1"
## HiC_scaffold_59_5350114 "1/1" "0/0" "1/1"
## HiC_scaffold_59_7738302 "0/1" "0/0" "1/1"
## HiC_scaffold_59_7738351 "0/1" "0/0" "1/1"
## HiC_scaffold_59_7958561 "0/0" "1|1" "0|1"
## HiC_scaffold_59_9273798 "1/1" "1/1" "0/0"
## HiC_scaffold_59_50928099 "0/1" NA "0/1"
## HiC_scaffold_59_52960060 "0/1" "0/0" "1|1"
## HiC_scaffold_6_10569023 "0/0" "0/0" NA
## HiC_scaffold_6_10711445 "0/1" "0/0" "1/1"
## HiC_scaffold_6_13209200 "0/0" "0/0" "0/0"
## HiC_scaffold_6_13213107 "0/0" "0/0" NA
## HiC_scaffold_6_13311684 NA "1|1" "0/0"
## HiC_scaffold_6_15670783 "0/0" "0/0" "0/1"
## HiC_scaffold_6_19111232 "1/1" "1/1" "0/0"
## HiC_scaffold_6_32805498 "0/0" "1/1" "1/1"
## HiC_scaffold_6_38793174 "0/0" "0/1" "0/1"
## HiC_scaffold_6_41092101 "0|1" "0/0" "0/0"
## HiC_scaffold_6_41342933 "0/0" NA NA
## HiC_scaffold_6_47594508 "0/0" "0/0" "1/1"
## HiC_scaffold_60_70878 "1|1" "1|1" "1|1"
## HiC_scaffold_60_99549 "0/0" "0/0" NA
## HiC_scaffold_60_201823 "0/1" "0/0" "0/1"
## HiC_scaffold_60_712969 "1|1" NA "1|1"
## HiC_scaffold_60_744783 "0|1" "1|1" "0|1"
## HiC_scaffold_60_744788 "0/0" "1|1" "0|1"
## HiC_scaffold_60_22142128 "0/1" NA "0/1"
## HiC_scaffold_60_27599770 "1/1" NA "1/1"
## HiC_scaffold_60_30608878 "0/1" "0/0" "1|1"
## HiC_scaffold_60_32657324 "0/1" "0/0" "0/0"
## HiC_scaffold_60_32672580 "1/1" "1/1" "1/1"
## HiC_scaffold_60_38856893 "0/0" "0/0" "0/0"
## HiC_scaffold_60_39028335 "1/1" "1/1" "1/1"
## HiC_scaffold_60_40296869 "0/1" "0/0" "1/1"
## HiC_scaffold_60_42775723 "0/0" NA "0/0"
## HiC_scaffold_60_44687906 NA "0/0" "0/0"
## HiC_scaffold_60_44804601 "0/1" "0/0" NA
## HiC_scaffold_60_53696867 "0/0" NA "0/0"
## HiC_scaffold_60_53696868 "0/0" NA "0/0"
## HiC_scaffold_60_60651515 "0/0" NA "1/1"
## HiC_scaffold_60_70678462 "1/1" "0/1" "1/1"
## HiC_scaffold_61_2205328 "0/0" "0/0" "0/0"
## HiC_scaffold_61_2491706 "1/1" "1/1" "1|1"
## HiC_scaffold_61_4009916 "0/0" "0/2" "1|1"
## HiC_scaffold_61_4062917 "0/0" "0/0" "0/0"
## HiC_scaffold_61_4122763 "1|1" "1|1" "1|1"
## HiC_scaffold_61_4216461 "1/1" NA "0/0"
## HiC_scaffold_61_4325053 "0/0" "0/0" "1/1"
## HiC_scaffold_61_9004838 "1|1" NA "1/1"
## HiC_scaffold_61_14635083 "1/1" "0/0" "1|1"
## HiC_scaffold_62_1128608 "1/1" "1/1" "0/1"
## HiC_scaffold_62_11335200 "0/0" NA NA
## HiC_scaffold_62_18828476 NA "1/1" "1/1"
## HiC_scaffold_62_21548870 "1|1" "1|1" NA
## HiC_scaffold_62_23103274 "1/1" "0/1" "1/1"
## HiC_scaffold_62_25793456 "0/0" "0/0" "0/0"
## HiC_scaffold_62_25887474 "1/1" NA "0/1"
## HiC_scaffold_62_28516096 NA "1|1" "1|1"
## HiC_scaffold_62_28516099 NA "1|1" "1|1"
## HiC_scaffold_62_28818725 "1|1" "0/0" "0/0"
## HiC_scaffold_62_28818729 "0/0" "1/1" "1|1"
## HiC_scaffold_62_45207353 "0|1" "0/0" "0/1"
## HiC_scaffold_63_3092269 "1/1" "0/1" "1/1"
## HiC_scaffold_63_3977940 "1/1" "0/0" "0/0"
## HiC_scaffold_63_4084937 "1/1" "0/0" "1/1"
## HiC_scaffold_63_4196326 "1|1" "0|1" "0/1"
## HiC_scaffold_63_6262453 "0/0" "0/1" "0/0"
## HiC_scaffold_63_6350204 "0/1" "1/1" "1/1"
## HiC_scaffold_63_6458794 NA "0/1" "0|1"
## HiC_scaffold_64_9162978 "0/2" "0/0" "0/0"
## HiC_scaffold_64_16876561 NA "0/0" "0/0"
## HiC_scaffold_64_17543009 "0/1" "0/1" "0/0"
## HiC_scaffold_64_18925356 "0/0" "1/1" "1/1"
## HiC_scaffold_64_19133050 "0/0" NA "1|1"
## HiC_scaffold_64_19627769 "1|1" "1|1" "1|1"
## HiC_scaffold_64_20477250 "0/0" "0/1" "1/1"
## HiC_scaffold_64_22816677 "0/0" "0/0" "0/0"
## HiC_scaffold_64_22954654 "1|1" "1|1" NA
## HiC_scaffold_64_22954658 "1|1" "1|1" NA
## HiC_scaffold_64_22954682 "1/1" "1/1" NA
## HiC_scaffold_65_6829971 "0/0" "0/0" "1/1"
## HiC_scaffold_65_8071102 NA "0/0" "0/0"
## HiC_scaffold_65_9023979 "0/1" "0/0" "1/1"
## HiC_scaffold_65_9839671 "0/1" NA "1/1"
## HiC_scaffold_65_10404778 "0/1" "0/0" "0/0"
## HiC_scaffold_65_11327791 "1/1" "1/1" NA
## HiC_scaffold_65_11332104 "0/0" "0/0" "1/1"
## HiC_scaffold_65_34823822 "0/0" "0/0" "1|1"
## HiC_scaffold_65_51418017 "1/1" "0/0" "1/1"
## HiC_scaffold_65_54053979 "1|1" "1|1" "1|1"
## HiC_scaffold_65_57110875 "1|1" "0/0" NA
## HiC_scaffold_66_15615363 "1|1" NA "0|1"
## HiC_scaffold_66_15672090 "0/0" NA "0/0"
## HiC_scaffold_66_17903445 "0|1" "0/0" "1|1"
## HiC_scaffold_66_18298629 "1|1" "0/0" "1|1"
## HiC_scaffold_66_19730676 "1|1" "0/0" "0/0"
## HiC_scaffold_66_23688768 "0/1" "0/1" "0/0"
## HiC_scaffold_66_26614535 "0/0" "2|2" NA
## HiC_scaffold_66_27445665 "1|1" NA "0/0"
## HiC_scaffold_66_29457165 "0/1" "1|1" "1|1"
## HiC_scaffold_66_29457180 "1/1" "0/0" "0/1"
## HiC_scaffold_66_30116287 "1/1" NA "0/0"
## HiC_scaffold_66_31603503 "0/0" "0/0" "0/0"
## HiC_scaffold_66_33261460 "0/1" "0|1" "1/1"
## HiC_scaffold_66_34138981 "0/0" "1/1" "1/1"
## HiC_scaffold_66_34139020 "1|1" "0/0" "0/0"
## HiC_scaffold_66_34142862 "1/1" "0/0" "0/0"
## HiC_scaffold_67_1404390 "0/0" "0/0" "0/1"
## HiC_scaffold_67_28493665 "0/0" "1|1" "1|1"
## HiC_scaffold_67_30243885 "0/0" "0/0" "0/0"
## HiC_scaffold_67_31511806 "0|1" "1|1" "0/0"
## HiC_scaffold_67_34638092 "0/1" "0/0" "0/0"
## HiC_scaffold_67_37534720 "0/1" "1/1" "0/0"
## HiC_scaffold_67_39679546 "1/1" "0/0" "0/1"
## HiC_scaffold_67_39854918 "0/0" "0/0" "1|1"
## HiC_scaffold_67_39860738 NA "0/1" "1/1"
## HiC_scaffold_67_40331656 "0/1" "0/1" "1/1"
## HiC_scaffold_67_40824747 "1|1" "1|1" "1|1"
## HiC_scaffold_68_3438132 "1|1" "0|1" "0/0"
## HiC_scaffold_68_3438133 "1|1" "0|1" "0/0"
## HiC_scaffold_68_11206902 "0/0" NA "1/1"
## HiC_scaffold_68_32770607 "1|1" "0|1" "0/1"
## HiC_scaffold_68_34016823 "0/0" "0|2" "0/0"
## HiC_scaffold_68_34020019 "1/1" "0/1" "0/0"
## HiC_scaffold_68_40296057 "1|1" "0/0" "0/0"
## HiC_scaffold_68_40296059 "1|1" "0/0" "0/0"
## HiC_scaffold_68_65001879 "1/1" "1/1" "1/1"
## HiC_scaffold_69_23311147 "0/0" NA "0/0"
## HiC_scaffold_69_27351303 "0/1" "0/0" "0/0"
## HiC_scaffold_69_29437208 "1|1" "1|1" "1|1"
## HiC_scaffold_69_33699381 NA "1|1" "1|1"
## HiC_scaffold_69_40194698 "1/1" "1/1" "1/1"
## HiC_scaffold_69_48273575 "1/1" NA "1|1"
## HiC_scaffold_69_48348026 "0/1" "0|1" "0/1"
## HiC_scaffold_69_48348034 "0/0" "0/1" "1/1"
## HiC_scaffold_69_49563252 "1/1" NA "0/1"
## HiC_scaffold_69_49593952 "1/1" "0/1" "1/1"
## HiC_scaffold_69_49859037 "0|1" "1|1" "1|1"
## HiC_scaffold_69_51271238 "0/1" "0/0" "1/1"
## HiC_scaffold_69_51529836 "0/0" "0/1" "0/0"
## HiC_scaffold_69_57313650 "0/0" "1/1" "0/1"
## HiC_scaffold_69_57359194 "0/0" "1/1" "1/1"
## HiC_scaffold_6951_523650 "0/1" NA "0/0"
## HiC_scaffold_6951_897126 "1|1" "0/0" "0/0"
## HiC_scaffold_6951_1134482 "1|1" "0/0" "0/0"
## HiC_scaffold_6951_2484960 "0/0" "0/0" "0/0"
## HiC_scaffold_6951_3301273 "1|1" "0/0" "1|1"
## HiC_scaffold_6951_3314609 "0/0" "0/0" "0/0"
## HiC_scaffold_6951_3945993 "1|1" "0/0" "0/1"
## HiC_scaffold_6958_218293 "0/2" "0/0" "0/0"
## HiC_scaffold_6958_449143 "0/0" "0/0" "0/0"
## HiC_scaffold_7_351023 "1/1" "0/0" "1/1"
## HiC_scaffold_7_488024 "1|1" "0/0" "0/0"
## HiC_scaffold_7_492663 "1/1" "0/1" "0/1"
## HiC_scaffold_7_693567 "1|1" NA "0/0"
## HiC_scaffold_7_2379128 "0/0" "0/0" "0/0"
## HiC_scaffold_7_3087721 NA "1/1" "1/1"
## HiC_scaffold_7_3394880 "0/0" "1/1" "1/1"
## HiC_scaffold_7_22247106 "0/1" "0/0" "0/0"
## HiC_scaffold_70_4632611 NA "1|1" "1|1"
## HiC_scaffold_70_14042778 "0/0" "0/0" "0/0"
## HiC_scaffold_71_410844 "1|1" "1|1" "1|1"
## HiC_scaffold_71_1753451 "0/0" "0/0" "0/0"
## HiC_scaffold_71_2283682 "0/0" "0/1" "0/0"
## HiC_scaffold_71_3439685 "0|0" "0/0" "0/0"
## HiC_scaffold_71_17850462 "1|1" "1/1" "0/0"
## HiC_scaffold_71_20588314 "0|1" "0/0" "0/0"
## HiC_scaffold_71_25465351 "0/0" NA "0|1"
## HiC_scaffold_71_25465352 "0/0" NA "0|1"
## HiC_scaffold_71_26356062 "0/0" "0/0" "1/1"
## HiC_scaffold_72_11785096 "0/1" "1/1" "0/1"
## HiC_scaffold_72_17285854 "0/0" "1/1" "0/1"
## HiC_scaffold_72_23704999 "0/0" "0/0" "1/1"
## HiC_scaffold_72_24465318 "0|0" "0/0" NA
## HiC_scaffold_72_30457277 "0/0" "0/0" "0/0"
## HiC_scaffold_72_32068649 "0/1" "0/0" "1/1"
## HiC_scaffold_72_35058295 "0/0" "0/1" "0/1"
## HiC_scaffold_72_36024997 "0/1" "0/1" "0/1"
## HiC_scaffold_72_37135067 "0/0" "1|1" "0/0"
## HiC_scaffold_72_38410141 "1/1" "0/1" "1/1"
## HiC_scaffold_72_38448056 "0/0" "0/0" "0/0"
## HiC_scaffold_72_41412511 "0/0" "1/1" "0/1"
## HiC_scaffold_73_2192629 NA "0/0" NA
## HiC_scaffold_73_2920208 "0|1" NA "0/0"
## HiC_scaffold_73_4522493 "1/1" "0/0" "1/1"
## HiC_scaffold_73_4748625 "1/1" "1/1" "1|1"
## HiC_scaffold_73_5839336 "1/1" "1/1" "1/1"
## HiC_scaffold_73_9338582 "0/0" "0/0" "1/1"
## HiC_scaffold_73_27393859 "0/0" "0/0" "0/1"
## HiC_scaffold_74_14235619 NA "1/1" "1|1"
## HiC_scaffold_74_14515598 "1/1" "1/1" "0/1"
## HiC_scaffold_74_15116121 "0/0" NA "0/0"
## HiC_scaffold_74_17233613 "1/1" "1/1" "1/1"
## HiC_scaffold_74_17725340 "1|1" "1|1" NA
## HiC_scaffold_74_18418135 "0/0" "1|1" "0/0"
## HiC_scaffold_74_18418138 "0/0" "1|1" "0/0"
## HiC_scaffold_74_21254425 "1/1" "0/0" "1/1"
## HiC_scaffold_74_22261065 "1/1" "0/0" "0/0"
## HiC_scaffold_74_47132519 "1|1" "0/1" "0/0"
## HiC_scaffold_74_50979096 "0/1" "0/0" "1/1"
## HiC_scaffold_74_51060549 "1/1" NA "1/1"
## HiC_scaffold_74_53256803 "0/0" "1/1" "0/1"
## HiC_scaffold_74_55464169 NA "0/0" "1/1"
## HiC_scaffold_74_55515512 "1/1" "1/1" "1/1"
## HiC_scaffold_74_55999260 "0/0" "0/0" "0/0"
## HiC_scaffold_74_57404902 NA "0/0" "1|1"
## HiC_scaffold_74_58181927 "1|1" "0/0" "1|1"
## HiC_scaffold_74_58198600 "1/1" "0/0" "0/1"
## HiC_scaffold_74_63060195 "1/1" "1/1" "1/1"
## HiC_scaffold_75_5345466 "1|1" "0/0" "0/1"
## HiC_scaffold_75_5346522 "0/1" "0/1" "0/0"
## HiC_scaffold_75_5346535 "0/1" "0/1" "0/0"
## HiC_scaffold_75_9850973 "1/1" "0/0" "1|1"
## HiC_scaffold_76_27149820 NA "0/1" "0/0"
## HiC_scaffold_76_31582908 NA NA NA
## HiC_scaffold_76_31792815 "0/0" "0/0" "0/0"
## HiC_scaffold_76_35352820 "1/1" NA "0/1"
## HiC_scaffold_76_57782171 "1/1" "1/1" "1/1"
## HiC_scaffold_76_59862401 "0/1" "0/0" "0/1"
## HiC_scaffold_76_61095594 NA "0/0" "1|1"
## HiC_scaffold_76_65496128 "0/1" "1/1" "0/1"
## HiC_scaffold_76_68965847 "0/0" "0/0" "1/1"
## HiC_scaffold_76_68966411 "1/1" NA "1/1"
## HiC_scaffold_76_69823482 "1|1" NA "0/0"
## HiC_scaffold_76_73343841 "1/1" NA "1/1"
## HiC_scaffold_77_3598274 "1/1" "0/0" "0/1"
## HiC_scaffold_77_6982137 "0/0" "0/1" NA
## HiC_scaffold_77_11021994 "1/1" "1/1" "1/1"
## HiC_scaffold_77_13608165 "0/0" "0/0" "0/0"
## HiC_scaffold_77_16888594 "0/1" "0|0" "1/1"
## HiC_scaffold_77_16888623 "0/0" "0/1" "0/1"
## HiC_scaffold_77_16889448 "0/0" "0/0" "0/0"
## HiC_scaffold_77_39784685 "1|1" "1|1" "1|1"
## HiC_scaffold_77_44375866 NA "0/0" "1/1"
## HiC_scaffold_77_45385370 "0/0" "0/0" NA
## HiC_scaffold_78_5719919 "0/0" NA "1/1"
## HiC_scaffold_78_11353297 "1|1" NA "0/0"
## HiC_scaffold_78_27316392 "0/1" "1/1" NA
## HiC_scaffold_78_48124809 "0/0" "2/2" "1/1"
## HiC_scaffold_78_48124826 "1/1" "1/1" "1/1"
## HiC_scaffold_78_48126176 "0/0" "0/1" "0/1"
## HiC_scaffold_78_48279096 "1/1" "0/0" "0/0"
## HiC_scaffold_78_48434558 "0/1" "0/0" "0/0"
## HiC_scaffold_78_49759181 "1|1" "0/0" "0/0"
## HiC_scaffold_78_49759192 "1|1" "0/0" NA
## HiC_scaffold_78_49759215 "0/0" "1/1" NA
## HiC_scaffold_78_51364025 "1/1" "1/1" "1/1"
## HiC_scaffold_78_55395445 "0/0" NA "0/0"
## HiC_scaffold_78_59610866 "0/1" "0/1" "0/1"
## HiC_scaffold_78_62136661 "1/1" "1/1" "1/1"
## HiC_scaffold_79_1643780 NA "0/0" "0|1"
## HiC_scaffold_79_2519178 NA "1/1" "1/1"
## HiC_scaffold_79_2858100 "0/0" "0/0" "1/1"
## HiC_scaffold_79_3922454 "0/1" "1/1" "0/0"
## HiC_scaffold_79_4127878 "1|1" "0/0" "0/0"
## HiC_scaffold_79_4543693 NA "0/0" NA
## HiC_scaffold_79_11507678 "0/1" "0/0" "0/0"
## HiC_scaffold_79_12618812 "0/0" "1/1" NA
## HiC_scaffold_79_14185404 NA "1|1" "1|1"
## HiC_scaffold_79_17120237 "0/0" "0/0" NA
## HiC_scaffold_79_17120254 "0/0" "0/0" NA
## HiC_scaffold_79_35551507 "1|1" "0/0" "1|1"
## HiC_scaffold_79_35551543 "1/1" "0/0" "1/1"
## HiC_scaffold_79_38927423 "0/0" "0|1" "1|1"
## HiC_scaffold_79_42623307 "1|1" "1|1" "1|1"
## HiC_scaffold_79_43179786 "1|1" NA "0/0"
## HiC_scaffold_79_43180099 "1/1" "0/0" "0/0"
## HiC_scaffold_79_43828078 "1|1" "0/0" "1|1"
## HiC_scaffold_79_43872513 "0/1" "1/1" "0/0"
## HiC_scaffold_79_44627215 "1/1" "0/0" "1/1"
## HiC_scaffold_79_50772769 NA "1|1" "1|1"
## HiC_scaffold_79_55468575 "1/1" "0/1" "0/0"
## HiC_scaffold_79_55816114 "0/1" "0/0" "1/1"
## HiC_scaffold_79_59915784 "0/0" "0/0" "1/1"
## HiC_scaffold_79_60165298 "0|1" NA "1|1"
## HiC_scaffold_79_60165305 "0/1" NA "1|1"
## HiC_scaffold_79_69145556 "0/0" NA "0/0"
## HiC_scaffold_79_70208305 "0|1" NA "0/0"
## HiC_scaffold_79_73412292 "0/0" NA "0/0"
## HiC_scaffold_79_73416663 "1|1" "0/0" "1|1"
## HiC_scaffold_79_73416688 "0/0" "1/1" "1|1"
## HiC_scaffold_79_76863102 "0/0" NA "0/1"
## HiC_scaffold_79_81279649 "1|1" NA "1|1"
## HiC_scaffold_79_81499990 "1/1" "0/1" "1/1"
## HiC_scaffold_79_82319836 "1|1" "1/1" "0/0"
## HiC_scaffold_79_82319849 "1|1" NA "0/0"
## HiC_scaffold_79_83163707 "0/0" "0/1" "0/1"
## HiC_scaffold_79_86283512 "1/1" "0/0" "1/1"
## HiC_scaffold_79_87123758 "1|1" "1|1" "1|1"
## HiC_scaffold_79_88362889 "0/0" "0/1" "0/0"
## HiC_scaffold_79_88599431 "0/0" NA "0/1"
## HiC_scaffold_79_89322919 "0/0" "0/0" "1/1"
## HiC_scaffold_79_89331918 "0/0" "0/0" "1|1"
## HiC_scaffold_79_91340958 "1|1" "1|1" "0/0"
## HiC_scaffold_8_13649836 "1|1" "1|1" NA
## HiC_scaffold_8_13650752 "1|1" NA "1|1"
## HiC_scaffold_8_23818233 "0/1" "1/1" "0/1"
## HiC_scaffold_8_24123972 "1|1" "1|1" "0/0"
## HiC_scaffold_8_24230791 NA "0/1" "0/0"
## HiC_scaffold_8_24588423 "0/0" "1|1" "0/0"
## HiC_scaffold_8_25348483 "0/0" NA "0/0"
## HiC_scaffold_8_25421933 "0/1" "1/1" "1/1"
## HiC_scaffold_8_25772942 "1/1" "1/1" "0/0"
## HiC_scaffold_8_26289589 "1|1" "1|1" "0/0"
## HiC_scaffold_8_27602740 "0/1" "1|1" "0/0"
## HiC_scaffold_8_28159063 "1/1" "1/1" "1/1"
## HiC_scaffold_8_30829320 "0/0" "1/1" "0/1"
## HiC_scaffold_8_31044084 "0/0" NA "0/1"
## HiC_scaffold_8_31415507 "0/0" "0/0" NA
## HiC_scaffold_8_32594682 "0/1" "0/0" "0/0"
## HiC_scaffold_80_3617847 "1/1" "1/1" "1/1"
## HiC_scaffold_80_5758183 NA "0/0" "0/0"
## HiC_scaffold_80_6760006 "0/0" "0|1" "1|1"
## HiC_scaffold_80_6760037 "0/0" "0/1" "1/1"
## HiC_scaffold_80_7772622 "1/1" "1/1" NA
## HiC_scaffold_80_7919533 "1/1" "1/1" "1/1"
## HiC_scaffold_80_8110052 NA "0/0" "0/1"
## HiC_scaffold_80_8193366 "1/1" "1/1" "0/1"
## HiC_scaffold_80_8625784 "1/1" "1/1" "1/1"
## HiC_scaffold_80_8912846 "0/1" "0/1" "1/1"
## HiC_scaffold_80_9544102 "0/1" "1/1" "0/0"
## HiC_scaffold_80_10770701 "0/1" "0/1" NA
## HiC_scaffold_80_11590146 "0/0" "0/1" "0/0"
## HiC_scaffold_80_16953653 "0/0" "0/1" "0/1"
## HiC_scaffold_80_18938832 "1|1" "0/0" NA
## HiC_scaffold_80_19015946 "1/1" "1/1" NA
## HiC_scaffold_80_19404001 NA "1/1" "1/1"
## HiC_scaffold_80_25346708 "0/0" "0/1" "0/0"
## HiC_scaffold_80_37479851 "1/1" "0/0" "1/1"
## HiC_scaffold_80_37507516 "0/1" NA "0/1"
## HiC_scaffold_81_1187192 "0/1" NA "1/1"
## HiC_scaffold_81_2689826 "1|1" "0|1" "0/0"
## HiC_scaffold_81_2690751 "1|1" "0/0" "1|1"
## HiC_scaffold_81_6614123 "1/1" "0/0" "0/1"
## HiC_scaffold_81_7836855 "0/0" "0/0" "0/1"
## HiC_scaffold_81_10334868 "0/1" "0/0" NA
## HiC_scaffold_81_10458752 NA "0/0" "0/0"
## HiC_scaffold_81_17515538 "1/1" NA "0/0"
## HiC_scaffold_81_40271282 NA "0/1" "1/1"
## HiC_scaffold_81_40271294 NA "0/1" "0/0"
## HiC_scaffold_81_41096427 "0/0" "0/1" "0/0"
## HiC_scaffold_81_41096444 "0/0" "0/0" "0/0"
## HiC_scaffold_81_43820595 "1/1" "0/0" "0/0"
## HiC_scaffold_81_43820732 "1|1" "0/0" "0/0"
## HiC_scaffold_81_43854278 "1/1" NA "0/0"
## HiC_scaffold_81_44804862 "0/0" "0/0" "1/1"
## HiC_scaffold_81_45063428 "1/1" NA "0/0"
## HiC_scaffold_81_45950590 "0/0" "1/1" "0/0"
## HiC_scaffold_81_46714752 "0/0" "1|1" "0/0"
## HiC_scaffold_81_46714759 NA "0/0" "0/0"
## HiC_scaffold_81_47170397 NA "1|1" "0/1"
## HiC_scaffold_81_47628201 NA "0/0" "0/0"
## HiC_scaffold_81_48105216 "1|1" "1|1" "0/1"
## HiC_scaffold_81_48932070 "0/0" "1/1" NA
## HiC_scaffold_81_54050146 NA "1/1" "0/1"
## HiC_scaffold_82_5672063 "0/0" "0/0" "1|1"
## HiC_scaffold_82_8796823 "0/0" NA "0/0"
## HiC_scaffold_82_13450959 "0/0" NA "0/0"
## HiC_scaffold_82_26144442 "0/0" "0/0" "1/1"
## HiC_scaffold_82_26147011 "1|1" NA "1|1"
## HiC_scaffold_82_28907834 "0/1" "1/1" "0/1"
## HiC_scaffold_82_34413793 "0/0" "0/1" "1|1"
## HiC_scaffold_82_34413800 "1/1" "0/1" "1|1"
## HiC_scaffold_82_36173035 "0/0" NA NA
## HiC_scaffold_82_40539273 "1/1" NA NA
## HiC_scaffold_82_41470256 "1/1" "1/1" "0/0"
## HiC_scaffold_83_23993605 "0/1" "0/0" "0/0"
## HiC_scaffold_83_35035961 "1/1" "0/1" "1/1"
## HiC_scaffold_83_43423618 "1|1" "0/0" "1|1"
## HiC_scaffold_83_46920654 NA "0/1" "1/1"
## HiC_scaffold_83_46934197 "1/1" NA "0|1"
## HiC_scaffold_84_356301 "0/0" "0/0" "1|1"
## HiC_scaffold_84_5761817 "1/1" "0/1" "0/1"
## HiC_scaffold_84_5769022 "0/0" "1|1" "0/1"
## HiC_scaffold_84_6288130 NA "0/0" "0/0"
## HiC_scaffold_84_6288141 NA "0/0" "1|1"
## HiC_scaffold_84_6288147 NA "0/0" "0/0"
## HiC_scaffold_84_7069238 "1|1" "0|1" "1|1"
## HiC_scaffold_84_9131309 "1/1" "0/1" "0/0"
## HiC_scaffold_84_10148442 "0/1" "0/1" "0/1"
## HiC_scaffold_84_14659391 "1/1" "1/1" "1/1"
## HiC_scaffold_84_16302752 "1/1" "1/1" "2|2"
## HiC_scaffold_84_18463244 "0/1" "0/1" "1/1"
## HiC_scaffold_84_22909575 NA "1|1" "1|1"
## HiC_scaffold_84_29275266 NA "1/1" "1/1"
## HiC_scaffold_84_31184610 "1/1" "1/1" "1/1"
## HiC_scaffold_84_33093169 "0/0" "0/0" NA
## HiC_scaffold_84_37675180 "0/1" NA "0/0"
## HiC_scaffold_84_39501814 "0|1" "0/0" "1/1"
## HiC_scaffold_84_50169438 "0/0" NA "1|1"
## HiC_scaffold_84_50169445 "0/0" NA "1|1"
## HiC_scaffold_84_51231025 "0/1" "0/0" "0/0"
## HiC_scaffold_85_9792207 "1/1" "1|1" "0/0"
## HiC_scaffold_85_11784233 NA "0/0" "0/0"
## HiC_scaffold_85_11911022 "0/0" "1|1" NA
## HiC_scaffold_85_11911142 "1/1" "0/0" "0/0"
## HiC_scaffold_85_11913828 NA "1/1" "0/1"
## HiC_scaffold_85_11913831 "0/0" "0/0" "0/0"
## HiC_scaffold_85_12353081 "0/0" "1/1" "0/1"
## HiC_scaffold_85_12414551 "0/0" "1/1" "0/0"
## HiC_scaffold_85_13043967 NA "0/0" "0|1"
## HiC_scaffold_85_13221888 "0/0" "0/0" "0/0"
## HiC_scaffold_85_27008863 "1/1" "0/0" NA
## HiC_scaffold_85_28992264 NA "1|1" "0|1"
## HiC_scaffold_85_28992268 NA "1|1" "1/1"
## HiC_scaffold_85_64310850 "1|1" "0/0" "1/1"
## HiC_scaffold_85_65135112 "0/0" "1|1" "1|1"
## HiC_scaffold_85_65563529 NA "1/1" "1/1"
## HiC_scaffold_86_1949664 "1|1" "0/1" "1|1"
## HiC_scaffold_86_5340423 "1/1" "1/1" "1/1"
## HiC_scaffold_86_5483991 NA "1|1" "0/0"
## HiC_scaffold_86_8928469 "0/1" "0/0" "0/0"
## HiC_scaffold_86_23727924 "1|1" "0/0" "0/0"
## HiC_scaffold_86_24825818 "1|1" "1|1" "1|1"
## HiC_scaffold_86_25333718 "1/1" NA NA
## HiC_scaffold_86_29668168 "0/0" "0/0" NA
## HiC_scaffold_86_30914243 "1|1" NA "0/0"
## HiC_scaffold_86_32040320 "0/0" "1|1" NA
## HiC_scaffold_86_32040329 "0/0" "1|1" NA
## HiC_scaffold_86_32125061 NA "0/0" "0/0"
## HiC_scaffold_86_32144758 "1/1" "1/1" "0/0"
## HiC_scaffold_86_32153692 "1/1" "0/1" "1/1"
## HiC_scaffold_86_32534129 "1/1" "0|1" "0/0"
## HiC_scaffold_86_32605768 NA "1|1" "1|1"
## HiC_scaffold_86_36355399 NA "0/0" "1/1"
## HiC_scaffold_86_36357265 "1/1" "1/1" "1/1"
## HiC_scaffold_87_1253643 "0/0" "0/0" "0/0"
## HiC_scaffold_87_2137958 "1/1" NA "1/1"
## HiC_scaffold_87_3980100 "1/1" "0/0" "1/1"
## HiC_scaffold_87_4395923 "1/1" "0/0" "0/0"
## HiC_scaffold_87_5489328 "1|1" NA "1|1"
## HiC_scaffold_87_6300441 "1/1" "0/1" "1/1"
## HiC_scaffold_87_16306904 "1/1" "1/1" "1/1"
## HiC_scaffold_87_44780945 NA "0/0" "1|1"
## HiC_scaffold_88_5584327 "0/1" "0/1" "1|1"
## HiC_scaffold_88_7104630 "1|1" "0/0" "0|1"
## HiC_scaffold_88_7104631 "1|1" "1|1" "0|1"
## HiC_scaffold_88_7104638 "1|1" "1|1" "1/1"
## HiC_scaffold_88_7104639 "1|1" "1|1" "0|1"
## HiC_scaffold_88_7104640 "1|1" "0/1" "0|1"
## HiC_scaffold_88_7479340 "0/0" "0/0" "1/1"
## HiC_scaffold_88_8773607 NA "0/0" "1|1"
## HiC_scaffold_88_9883678 "1|1" "1|1" "1|1"
## HiC_scaffold_88_10878718 "0/0" "0/0" "1/1"
## HiC_scaffold_88_19365116 "0/0" "1|1" "0/0"
## HiC_scaffold_88_20477349 "0/0" NA "0/0"
## HiC_scaffold_88_20557885 "0/1" "0/0" "0/1"
## HiC_scaffold_89_675045 NA "1/1" "0/1"
## HiC_scaffold_89_2815845 "0/0" "0/0" "0/2"
## HiC_scaffold_89_2843940 "1|1" "0/0" "0|1"
## HiC_scaffold_89_3018830 "1/1" "1/1" "1/1"
## HiC_scaffold_89_13745506 "0/0" NA "1/1"
## HiC_scaffold_89_30006907 "0/0" "1/1" "0/1"
## HiC_scaffold_89_36509388 "0/0" "1|1" "1|1"
## HiC_scaffold_89_38703735 NA "1/1" NA
## HiC_scaffold_89_38764895 "1/1" NA "1/1"
## HiC_scaffold_89_42052609 "0/0" "0/1" "0/1"
## HiC_scaffold_89_42054991 "0/0" "0/1" "1/1"
## HiC_scaffold_89_44306958 "1/1" "0/1" "1/1"
## HiC_scaffold_89_44338206 "0/1" "0/0" "1/1"
## HiC_scaffold_89_45298973 "1/1" "1/1" "1/1"
## HiC_scaffold_9_3529921 NA "0/0" NA
## HiC_scaffold_9_5660454 "0|1" "1|1" "0/1"
## HiC_scaffold_9_5660461 "0|1" "1|1" "1/1"
## HiC_scaffold_9_5854070 "1/1" "1/1" "1/1"
## HiC_scaffold_9_6142415 "0/0" "1|1" "0/0"
## HiC_scaffold_9_6142436 "0/0" "1|1" "0/0"
## HiC_scaffold_9_6143781 "0/0" NA "0/1"
## HiC_scaffold_9_6654825 "0/0" "1/1" "0/1"
## HiC_scaffold_9_7094545 "0/1" "1|1" NA
## HiC_scaffold_9_7100208 "1|1" "1|1" NA
## HiC_scaffold_9_7109988 "0/1" "0/1" "0/0"
## HiC_scaffold_9_7111922 NA "1|1" "1|1"
## HiC_scaffold_9_8235781 NA "1/1" NA
## HiC_scaffold_9_8279558 "1/1" "1/1" "0/0"
## HiC_scaffold_9_15679481 "1|1" "0/0" NA
## HiC_scaffold_9_18082611 "0/2" "0/0" "0/0"
## HiC_scaffold_9_18090830 "1/1" "1/1" "0/1"
## HiC_scaffold_9_30240531 NA "1/1" NA
## HiC_scaffold_90_10418696 "1/1" NA "0/0"
## HiC_scaffold_90_11470224 "0/0" "1/1" "0/0"
## HiC_scaffold_90_13593319 "0/0" "1/1" "0/0"
## HiC_scaffold_90_16260161 "0/0" "0/0" "0/1"
## HiC_scaffold_90_22325499 "0/1" "1/1" "0/0"
## HiC_scaffold_90_23574204 NA "0|1" "1/1"
## HiC_scaffold_90_23609908 "1|1" NA "0/0"
## HiC_scaffold_90_23623078 "1|1" "0/0" "0/1"
## HiC_scaffold_90_23626883 "1/1" "0/0" "0/0"
## HiC_scaffold_90_23812663 NA "1/1" "1/1"
## HiC_scaffold_90_25939283 "0/1" "0/0" "0/0"
## HiC_scaffold_90_25985714 "0/1" "0/0" "0/0"
## HiC_scaffold_90_30751272 "0/1" "0/0" "1/1"
## HiC_scaffold_90_31232025 "0|1" "0/0" "1|1"
## HiC_scaffold_90_31245699 "0/0" "1/1" "0|1"
## HiC_scaffold_90_31527975 "0/1" "0/1" "1/1"
## HiC_scaffold_90_31546172 "0/0" "0/1" "1|1"
## HiC_scaffold_90_38511996 "0/1" NA "0/0"
## HiC_scaffold_90_38511999 "1|1" NA "0/0"
## HiC_scaffold_90_38517279 "1/1" "0/0" "0/0"
## HiC_scaffold_90_40624104 "0/0" NA "0/1"
## HiC_scaffold_91_5644765 "0/0" "0/0" "0/1"
## HiC_scaffold_91_5867214 "0|1" NA "0|1"
## HiC_scaffold_91_5867226 "0|1" NA "0|1"
## HiC_scaffold_91_7704263 "0/0" "1|1" "0/0"
## HiC_scaffold_91_7871360 NA "1/1" "1/1"
## HiC_scaffold_91_8538014 NA "1/1" "1/1"
## HiC_scaffold_91_13230485 "1|1" "1|1" NA
## HiC_scaffold_91_28696118 "0/0" NA "0/1"
## HiC_scaffold_91_28696625 "0/0" "0/0" "0/0"
## HiC_scaffold_91_42177482 NA "0/0" "0/0"
## HiC_scaffold_91_46813640 "1/1" "0/0" "0/0"
## HiC_scaffold_92_23783035 NA "0/0" "0/0"
## HiC_scaffold_92_23783036 NA "0/0" "0/0"
## HiC_scaffold_92_24712793 "0/0" "0/0" "0/0"
## HiC_scaffold_92_28698258 "1|1" NA "1|1"
## HiC_scaffold_92_40691582 "2/2" "0/0" NA
## HiC_scaffold_92_43967712 "0/1" "0/1" NA
## HiC_scaffold_92_47147572 "0|1" "0/0" "1/1"
## HiC_scaffold_92_49042714 "1|1" NA "1|1"
## HiC_scaffold_92_49042715 "1|1" NA "1|1"
## HiC_scaffold_92_53634002 "1/1" "1/1" "1/1"
## HiC_scaffold_92_58211868 "0/0" "0/0" "0/1"
## HiC_scaffold_92_60114155 "0|1" "0/0" "1|1"
## HiC_scaffold_92_63603483 "1|1" "0/0" "0/0"
## HiC_scaffold_92_64797225 "0/0" "0/0" "0/0"
## HiC_scaffold_92_68367476 "0|2" "0/0" "0|2"
## HiC_scaffold_93_1912167 "0/0" "0/0" "0/0"
## HiC_scaffold_93_2485978 "0|1" "0/0" "0/0"
## HiC_scaffold_93_3227638 "0/0" "0/0" "0/0"
## HiC_scaffold_93_3227641 "1|1" "1|1" "0/0"
## HiC_scaffold_93_13971208 "1/1" "1/1" "0/0"
## HiC_scaffold_93_13987080 "0/0" "0/0" NA
## HiC_scaffold_93_21125468 "1/1" "1/1" "0/1"
## HiC_scaffold_93_21845293 NA "0/0" "0/0"
## HiC_scaffold_93_21845310 "0/0" "0/0" NA
## HiC_scaffold_93_21846342 "1/1" "0/0" "0|1"
## HiC_scaffold_93_21846356 "0/0" "0/0" "1|1"
## HiC_scaffold_93_22589723 "0/0" "0/0" NA
## HiC_scaffold_93_22619278 "0/0" NA "1/1"
## HiC_scaffold_93_22631258 "1|1" "0/0" "1|1"
## HiC_scaffold_93_22631266 "1|1" "0/0" "1|1"
## HiC_scaffold_94_3110102 NA "0/0" "0/0"
## HiC_scaffold_94_3205919 "0/1" NA "1/1"
## HiC_scaffold_94_9023846 "0/1" "0/0" "0/1"
## HiC_scaffold_94_11572820 "1/1" "1/1" "1/1"
## HiC_scaffold_94_12368532 "0/1" "0/1" "0/0"
## HiC_scaffold_94_42179418 "0/0" "0/0" "1/1"
## HiC_scaffold_94_42179519 "1/1" "1/1" "0/0"
## HiC_scaffold_94_51646206 "0/2" "0/0" "1/1"
## HiC_scaffold_94_52781289 "0/0" "1/1" "1/1"
## HiC_scaffold_94_53790035 "0/0" "1|1" "0/1"
## HiC_scaffold_94_53792738 "1/1" "1/1" "0/1"
## HiC_scaffold_94_56768905 "0|1" "1|1" "1|1"
## HiC_scaffold_946_81276 "0/0" "1/1" "1/1"
## HiC_scaffold_95_3189690 "1/1" "1/1" "0/1"
## HiC_scaffold_95_4397298 "1|1" "1|1" "1|1"
## HiC_scaffold_95_9469157 "0/0" "1|1" "1|1"
## HiC_scaffold_95_10641411 "1/1" "1/1" "1/1"
## HiC_scaffold_95_10949821 "0/0" "0/0" "1/1"
## HiC_scaffold_95_12993394 "1|1" "0/0" "1|1"
## HiC_scaffold_95_15515793 "0|1" NA "0/0"
## HiC_scaffold_95_15608785 "1|1" "1|1" NA
## HiC_scaffold_95_15609137 "0/0" NA "1/1"
## HiC_scaffold_95_16295316 "0/0" NA "0/1"
## HiC_scaffold_95_22656165 "0/0" "1|1" "0|1"
## HiC_scaffold_95_25885727 "0/0" "0/0" "0|1"
## HiC_scaffold_96_10460019 "1/1" "1/1" "0/0"
## HiC_scaffold_96_27155785 "0/1" "1/1" "1/1"
## HiC_scaffold_96_37939434 "0/1" "1|1" "0/1"
## HiC_scaffold_96_51115048 "0/0" "1/1" "1|1"
## HiC_scaffold_96_51116511 "1/1" "1/1" "1/1"
## HiC_scaffold_96_51915040 NA "0/0" "1|1"
## HiC_scaffold_96_52681287 "0/0" "1/1" "0/1"
## HiC_scaffold_96_53276519 "0/0" "0/1" NA
## HiC_scaffold_97_1736926 "0/0" "1|1" "1|1"
## HiC_scaffold_97_1736994 "0/0" "1|1" NA
## HiC_scaffold_97_3863543 "1/1" "1/1" "1/1"
## HiC_scaffold_97_4200445 NA "0/0" "0/0"
## HiC_scaffold_97_4799162 "0/0" "1/1" "0/0"
## HiC_scaffold_97_5027892 "1/1" NA "0/0"
## HiC_scaffold_97_8007933 "0/0" "0/0" "1|1"
## HiC_scaffold_97_17997210 "1|1" NA "0/0"
## HiC_scaffold_97_18604647 "1/1" "1/1" "1|1"
## HiC_scaffold_97_20239636 "0|1" "1|1" NA
## HiC_scaffold_98_15154096 "1/1" "1|1" "1/1"
## HiC_scaffold_98_22342667 "0/0" NA NA
## HiC_scaffold_98_22634293 "1|1" "1|1" "1|1"
## HiC_scaffold_98_22634294 "1|1" "1|1" "1|1"
## HiC_scaffold_98_22721138 "1/1" NA "1/1"
## HiC_scaffold_98_22869378 "0/0" NA "0/0"
## HiC_scaffold_98_24108405 "1|1" "0/1" "0/0"
## HiC_scaffold_98_27359592 "0/1" "0/1" "1|1"
## HiC_scaffold_98_28549834 "0/1" "1/1" NA
## HiC_scaffold_98_28867520 "0|1" "0/0" "1|1"
## HiC_scaffold_98_28867524 "0|1" "0/0" "1|1"
## HiC_scaffold_98_29431717 "1|1" "0/0" NA
## HiC_scaffold_98_29675109 "0/1" "0/1" NA
## HiC_scaffold_99_1163244 "0/1" "0/0" "0/0"
## HiC_scaffold_99_1451611 "0/0" "1/1" "0/0"
## HiC_scaffold_99_2021961 "0/0" NA "0/0"
## HiC_scaffold_99_5134392 "0/1" "0/0" "0/0"
## HiC_scaffold_99_5239109 "0/1" "0/0" "0/1"
## HiC_scaffold_99_6917738 NA "1|1" "1|1"
## HiC_scaffold_99_11221970 "1|1" "0/0" "0|1"
## HiC_scaffold_99_25982503 "1/1" "1/1" "1/1"
## Tank_7_Crab_1 Tank_7_Crab_3 Tank_7_Crab_4
## HiC_scaffold_1_2523394 "1/1" "0/0" "0/1"
## HiC_scaffold_1_2542157 "0/0" "1/1" "0/0"
## HiC_scaffold_1_2647806 "0/0" "1/1" "0/0"
## HiC_scaffold_1_2970226 "0/0" "1|1" "1|1"
## HiC_scaffold_1_3329447 "0/0" "0/0" "0/0"
## HiC_scaffold_1_3795100 "0/0" "0/0" "1|1"
## HiC_scaffold_10_2221345 "0/0" "0/0" NA
## HiC_scaffold_10_2299490 "0/0" "0/0" "0/0"
## HiC_scaffold_10_2565301 "1/1" "0/1" NA
## HiC_scaffold_10_3864355 NA "1/1" NA
## HiC_scaffold_10_4319900 "1|1" "0/0" "0|1"
## HiC_scaffold_10_4319907 "1|1" "0/0" "0|1"
## HiC_scaffold_10_5404579 "0/0" "0/0" "0/0"
## HiC_scaffold_10_5843373 "1/1" NA "0/1"
## HiC_scaffold_100_854947 NA "1|1" "1|1"
## HiC_scaffold_100_1070817 "0/1" NA "1/1"
## HiC_scaffold_100_2002094 NA "0/0" "0|1"
## HiC_scaffold_100_2002097 NA "0/0" "0|1"
## HiC_scaffold_100_2010331 NA "1|1" "1|1"
## HiC_scaffold_100_5186498 "1/1" "1/1" "1/1"
## HiC_scaffold_100_5828477 "0/0" "0/0" "1/1"
## HiC_scaffold_100_6470419 "0|1" "0|1" "1|1"
## HiC_scaffold_100_6739225 "0/0" NA "1/1"
## HiC_scaffold_100_6739258 "0/0" NA "1|1"
## HiC_scaffold_100_6739264 "0/0" NA "1|1"
## HiC_scaffold_100_6907177 "0/0" "1/1" "0/1"
## HiC_scaffold_100_8384481 "0/0" "0/0" "1|1"
## HiC_scaffold_100_8384495 NA "1/1" "1|1"
## HiC_scaffold_100_9451470 NA NA "0/0"
## HiC_scaffold_100_10464574 "0/1" NA "1/1"
## HiC_scaffold_100_11934792 "0/0" "1|1" NA
## HiC_scaffold_100_11980177 "1/1" "1|1" NA
## HiC_scaffold_100_18465760 "1|1" "0/0" NA
## HiC_scaffold_100_18465762 "1|1" "0/0" NA
## HiC_scaffold_100_18466205 "2|2" NA NA
## HiC_scaffold_100_31738115 "0/1" "1/1" "1/1"
## HiC_scaffold_100_44227362 "0/0" "0/0" NA
## HiC_scaffold_101_12808961 "0/1" "0/0" "0|1"
## HiC_scaffold_101_13897149 "1/1" "1/1" "1/1"
## HiC_scaffold_101_18337279 "0/0" NA "0/0"
## HiC_scaffold_101_20800167 "1/1" "1/1" "1/1"
## HiC_scaffold_102_2260041 "1/1" "0/0" NA
## HiC_scaffold_102_8734519 "0/0" "0/1" "0/1"
## HiC_scaffold_102_10233999 NA "0/0" "0/0"
## HiC_scaffold_102_11446042 "1/1" "0/0" NA
## HiC_scaffold_102_15918694 "0/0" "0/0" NA
## HiC_scaffold_102_15935667 "1/1" "0/0" "1/1"
## HiC_scaffold_102_17442643 "0/0" "1/1" "0/0"
## HiC_scaffold_102_17608969 "0/0" "1/1" "0/0"
## HiC_scaffold_102_20180185 "0/0" "1/1" NA
## HiC_scaffold_102_24788723 "1/1" "0/0" "0/0"
## HiC_scaffold_102_25423729 NA "1|1" NA
## HiC_scaffold_102_39755142 "0/0" NA "1/1"
## HiC_scaffold_102_52046978 "1/1" "0/1" NA
## HiC_scaffold_1027_34152 "1/1" "1/1" "0/0"
## HiC_scaffold_103_601715 "0/1" "0/1" "1/1"
## HiC_scaffold_103_2891384 "0/0" "0/0" "1/1"
## HiC_scaffold_103_8191270 "0/0" NA NA
## HiC_scaffold_103_9521272 NA "1/1" "0/0"
## HiC_scaffold_103_14768909 "0/0" "0/0" "0/0"
## HiC_scaffold_103_19312119 "1|1" "1/1" NA
## HiC_scaffold_103_21284866 "1/1" NA NA
## HiC_scaffold_103_31428453 NA "1|1" NA
## HiC_scaffold_103_42567396 "1/1" "0/0" "1/1"
## HiC_scaffold_103_45921571 "0/0" "1|1" "0/0"
## HiC_scaffold_103_45921573 "0/0" "1|1" "0/0"
## HiC_scaffold_103_49592022 "1|1" "0/0" "1/1"
## HiC_scaffold_103_49620132 NA NA NA
## HiC_scaffold_103_50440915 "0/0" "1|1" "0/0"
## HiC_scaffold_103_51944137 "1/1" "1/1" NA
## HiC_scaffold_103_54308582 "0/1" "0/0" "0/0"
## HiC_scaffold_103_54424067 "0/0" "0/0" "0/0"
## HiC_scaffold_103_56932900 "0/1" "1/1" NA
## HiC_scaffold_103_57470264 "1|1" "1|1" "1|1"
## HiC_scaffold_104_7771140 NA NA NA
## HiC_scaffold_104_9103028 "0/0" NA NA
## HiC_scaffold_104_10633168 "0/0" "0/0" NA
## HiC_scaffold_104_18917031 "0/0" "0/0" NA
## HiC_scaffold_104_20851902 "0/0" "1/1" "1/1"
## HiC_scaffold_104_24451803 "0/1" "1/1" NA
## HiC_scaffold_104_28597688 "0|1" "0/0" "0/1"
## HiC_scaffold_104_40927999 "0/0" "0/0" "1/1"
## HiC_scaffold_104_46490074 "1/1" "0/1" "0/0"
## HiC_scaffold_104_49759053 "0/1" "0/1" "1/1"
## HiC_scaffold_104_57267896 "0/0" "0/0" NA
## HiC_scaffold_104_62570010 "0/0" "0/0" NA
## HiC_scaffold_11_32804173 "1/1" "1/1" "0/1"
## HiC_scaffold_11_34516508 "1/1" NA "1/1"
## HiC_scaffold_11_35332996 NA "0/0" "0/0"
## HiC_scaffold_11_35904027 NA "1/1" "1/1"
## HiC_scaffold_11_41539793 "1/1" "1|1" NA
## HiC_scaffold_11_41604080 "0/0" "1|1" "1|1"
## HiC_scaffold_11_42855323 "1/1" NA "1/1"
## HiC_scaffold_11_45339409 "0/0" "0/0" "0/0"
## HiC_scaffold_11_45339410 "0/0" "0/0" "0/1"
## HiC_scaffold_11_47544035 "0/0" NA NA
## HiC_scaffold_12_7515164 NA "0/0" NA
## HiC_scaffold_12_12640100 "1/1" "1/1" "0/0"
## HiC_scaffold_12_12826705 NA "0/0" NA
## HiC_scaffold_12_14899285 "0/0" "0/0" "0/1"
## HiC_scaffold_12_17465672 "0|1" "0|1" NA
## HiC_scaffold_12_22770710 "0/0" "0/0" NA
## HiC_scaffold_12_32318964 "1|1" NA NA
## HiC_scaffold_12_35136373 "0/0" "0/0" NA
## HiC_scaffold_12_40687860 "0/0" NA "0/0"
## HiC_scaffold_13_2938168 "0/1" NA NA
## HiC_scaffold_13_20350974 "1/1" "0/1" "1/1"
## HiC_scaffold_13_27759554 "1/1" "0/0" "0/0"
## HiC_scaffold_13_28146828 "0|0" NA "0/0"
## HiC_scaffold_13_28146830 "0|0" NA "0/0"
## HiC_scaffold_13_28925343 "1/1" "1/1" "1/1"
## HiC_scaffold_13_31913129 "0/0" "1/1" "0/1"
## HiC_scaffold_13_32078924 "0/0" "0/0" "0/0"
## HiC_scaffold_13_33864805 NA "1/1" "0/1"
## HiC_scaffold_13_34892542 "0/1" "0/0" NA
## HiC_scaffold_13_34893103 "1/1" NA NA
## HiC_scaffold_13_35762551 "0|1" "0/0" NA
## HiC_scaffold_13_35881745 "1|1" "1/1" "1/1"
## HiC_scaffold_13_35881749 "1|1" "0/1" "0/0"
## HiC_scaffold_14_3843214 NA "0/0" "0/0"
## HiC_scaffold_14_25884262 "0/0" NA "0/0"
## HiC_scaffold_14_27050415 "1/1" "0/0" "1/1"
## HiC_scaffold_14_27118495 "1/1" "1/1" NA
## HiC_scaffold_14_27277222 NA NA NA
## HiC_scaffold_14_29215814 "0/0" "1|1" "0/0"
## HiC_scaffold_15_2460398 "0/0" "1|1" "0/0"
## HiC_scaffold_15_2462980 "1/1" "1/1" "0/1"
## HiC_scaffold_15_2467289 "1/1" "1/1" "1/1"
## HiC_scaffold_15_5669141 "1/1" "1/1" NA
## HiC_scaffold_15_13700694 NA "0/2" NA
## HiC_scaffold_15_17825275 "0/0" NA NA
## HiC_scaffold_15_19938475 "1/1" NA NA
## HiC_scaffold_15_23865956 "0/0" NA "0/0"
## HiC_scaffold_15_28837774 "1/1" "1|1" "0/0"
## HiC_scaffold_15_28837810 "0/0" "0/0" NA
## HiC_scaffold_15_28837823 "1/1" "0/0" "1/1"
## HiC_scaffold_15_28837835 NA "1/1" "0/0"
## HiC_scaffold_15_28837841 NA "0/0" "0/0"
## HiC_scaffold_15_28837854 NA NA "1/1"
## HiC_scaffold_15_34827832 "0|1" "0/0" "0/0"
## HiC_scaffold_15_34893807 NA NA "1/1"
## HiC_scaffold_15_35327348 "0/1" "1/1" NA
## HiC_scaffold_15_42161112 "1|1" NA NA
## HiC_scaffold_15_42164926 "0/0" "1|1" NA
## HiC_scaffold_15_42164946 "0/0" "1/1" NA
## HiC_scaffold_15_46289572 "1/1" "1/1" NA
## HiC_scaffold_15_50591576 "1|1" "1|1" "1|1"
## HiC_scaffold_15_50759128 "0/1" "1|1" NA
## HiC_scaffold_15_51188336 "0/0" "0/1" "1|1"
## HiC_scaffold_15_54726640 "1/1" "1/1" "1/1"
## HiC_scaffold_15_54788235 "1/1" "1/1" "1/1"
## HiC_scaffold_15_56162375 NA "0|1" "0|1"
## HiC_scaffold_15_61091106 "0/0" "1/1" "0/0"
## HiC_scaffold_15_61464359 NA "1/1" "1/1"
## HiC_scaffold_15_61510386 "1/1" "0/0" NA
## HiC_scaffold_15_62309788 NA "0/0" "1|1"
## HiC_scaffold_15_62309793 NA "0/0" "1|1"
## HiC_scaffold_15_62771254 "0/0" NA "0/0"
## HiC_scaffold_15_63493927 "1/1" "1/1" NA
## HiC_scaffold_15_64997502 "1/1" "0/0" "0/1"
## HiC_scaffold_15_65007865 "0|1" NA "1|1"
## HiC_scaffold_15_65007879 "0|1" NA "0/1"
## HiC_scaffold_15_66038529 "0/1" "0/0" "0/1"
## HiC_scaffold_15_69811281 "1/1" NA NA
## HiC_scaffold_16_14205925 "1/1" "0/0" "0/1"
## HiC_scaffold_16_30404047 "0/0" "0/0" NA
## HiC_scaffold_16_57413288 NA "0|1" NA
## HiC_scaffold_16_63687578 "1|1" "0/1" NA
## HiC_scaffold_16_74138787 "1/1" "0/0" "1/1"
## HiC_scaffold_16_74140106 NA "0/0" "0/0"
## HiC_scaffold_16_76276015 "0/1" "1/1" "0/0"
## HiC_scaffold_17_11390873 "0/0" NA NA
## HiC_scaffold_17_12551128 "0/0" "0/1" "1/1"
## HiC_scaffold_17_16615612 "1/1" "0/0" NA
## HiC_scaffold_17_18838093 "0/0" "1|1" "0/0"
## HiC_scaffold_17_22801072 "0/1" "0/0" "0/0"
## HiC_scaffold_17_23788599 "0/0" "0/0" NA
## HiC_scaffold_17_29383895 "0/0" "1/1" "0/0"
## HiC_scaffold_17_29618771 "0/0" "1/1" "0/0"
## HiC_scaffold_17_29976139 NA "0/1" "1/1"
## HiC_scaffold_17_31107213 "1/1" "1/1" "1/1"
## HiC_scaffold_17_32493792 "1/1" "1/1" NA
## HiC_scaffold_17_33732050 "1/1" NA "0/0"
## HiC_scaffold_17_33801314 "1|1" "0/0" NA
## HiC_scaffold_17_34081889 "0/1" "1/1" "0/1"
## HiC_scaffold_18_227565 "0/0" "0/0" "0/0"
## HiC_scaffold_18_1213486 "0/1" "1/1" "0/1"
## HiC_scaffold_18_1701312 "0/0" "0/0" NA
## HiC_scaffold_18_3506437 "1/1" "1/1" "1/1"
## HiC_scaffold_18_6304978 "1/1" "1/1" "0/1"
## HiC_scaffold_18_6351493 NA "0/0" NA
## HiC_scaffold_18_6358009 "0/0" "0/0" "0/0"
## HiC_scaffold_18_10770701 "1/1" "0/0" NA
## HiC_scaffold_18_13342858 NA "1/1" "1/1"
## HiC_scaffold_18_20045832 "1|1" "0/0" "0/0"
## HiC_scaffold_18_22682683 "0/0" "0/0" "0/0"
## HiC_scaffold_18_26337790 "0/0" "0/0" "1|1"
## HiC_scaffold_18_48929148 "0/0" "0/1" NA
## HiC_scaffold_18_51490626 "0/0" NA NA
## HiC_scaffold_18_53723137 "0/0" "0/0" "1/1"
## HiC_scaffold_18_54496637 NA "1|1" "0/1"
## HiC_scaffold_18_55294388 "1/1" "0/0" "0/0"
## HiC_scaffold_19_279726 "0/1" "1/1" NA
## HiC_scaffold_19_6426572 "0/0" "0/0" "0/0"
## HiC_scaffold_19_6575887 "0/0" NA NA
## HiC_scaffold_19_7755254 "0|1" NA "0/0"
## HiC_scaffold_19_9301421 "0/1" NA "0/0"
## HiC_scaffold_19_9357388 NA "1|1" "0/0"
## HiC_scaffold_19_9778841 "0/0" "1/1" "0/0"
## HiC_scaffold_19_10928976 "1|1" "0/0" NA
## HiC_scaffold_19_10928980 "1|1" "0/0" NA
## HiC_scaffold_19_10928982 "0/0" "1|1" NA
## HiC_scaffold_19_11106347 "0/0" "1|1" "1|1"
## HiC_scaffold_19_11590139 "0/1" "0/0" "1/1"
## HiC_scaffold_19_11665300 "1/1" "1/1" "0/0"
## HiC_scaffold_19_14793640 "0/0" "0/0" "0/0"
## HiC_scaffold_19_22112743 "0/1" "1|1" "0/1"
## HiC_scaffold_19_25473671 "1/1" "0/1" "0/1"
## HiC_scaffold_19_25473692 "0/0" "0/0" "0/1"
## HiC_scaffold_19_28110829 "1|1" "1|1" "0/0"
## HiC_scaffold_19_28465002 "1/1" "0/0" NA
## HiC_scaffold_19_28465167 NA "0/1" NA
## HiC_scaffold_19_30106869 "1|1" NA NA
## HiC_scaffold_19_52538858 "1/1" "1/1" "1/1"
## HiC_scaffold_19_52596196 "0/0" "0/0" "0|1"
## HiC_scaffold_19_53482993 "1/1" "0/0" "1|1"
## HiC_scaffold_19_54312637 "1/1" "1/1" "0/1"
## HiC_scaffold_19_59345841 "0/0" "0/0" NA
## HiC_scaffold_2_3296144 "1|1" "1|1" NA
## HiC_scaffold_2_3418589 "1/1" "0/1" "1/1"
## HiC_scaffold_2_3864060 NA "1/1" NA
## HiC_scaffold_2_4104755 "0/0" "0/0" NA
## HiC_scaffold_2_4104758 "0/0" "0/0" NA
## HiC_scaffold_2_8316721 "0/0" "1|1" "0/0"
## HiC_scaffold_2_9098999 NA "1/1" "0/1"
## HiC_scaffold_2_10457537 "0/0" "0/0" "0/0"
## HiC_scaffold_2_19048125 "1/1" NA "0/0"
## HiC_scaffold_2_21748201 "1/1" "1/1" "0|1"
## HiC_scaffold_2_33187764 NA "0/0" "0/0"
## HiC_scaffold_2_33187770 NA "0/0" "0/0"
## HiC_scaffold_2_33187959 NA NA "1/1"
## HiC_scaffold_2_41603929 "1/1" "0/1" NA
## HiC_scaffold_2_52233191 "1/1" "0/0" NA
## HiC_scaffold_2_52400748 "1|1" NA NA
## HiC_scaffold_2_52403793 "1|1" NA NA
## HiC_scaffold_2_52799130 NA "0/1" "0/1"
## HiC_scaffold_20_10332897 "0/0" "0/1" "1/1"
## HiC_scaffold_20_17198418 "1|1" "1|1" "0/1"
## HiC_scaffold_20_17915398 "0/0" "1|1" "0/1"
## HiC_scaffold_20_18872955 "0/1" NA NA
## HiC_scaffold_20_19055301 "1/1" "1/1" "1/1"
## HiC_scaffold_20_19150094 "0/1" "1/1" NA
## HiC_scaffold_20_20651022 "0/1" "0/1" "1|1"
## HiC_scaffold_20_22651296 "1/1" "1/1" NA
## HiC_scaffold_21_2009156 "0|1" "0/0" "0/0"
## HiC_scaffold_21_2435648 NA "0/1" "1/1"
## HiC_scaffold_21_7164210 "0/0" "0|1" "0/0"
## HiC_scaffold_21_9786512 "0/0" "1/1" "0/0"
## HiC_scaffold_21_12424922 "1/1" "1|1" "1/1"
## HiC_scaffold_21_17966833 "1/1" "1/1" "1/1"
## HiC_scaffold_21_19025429 "1/1" "1/1" NA
## HiC_scaffold_21_20058318 "0|1" "0|1" "0/0"
## HiC_scaffold_21_20562855 NA "0|1" NA
## HiC_scaffold_21_20661860 "0/0" "0/1" "0/0"
## HiC_scaffold_21_20895395 "0/0" "0/0" "0/0"
## HiC_scaffold_21_21158811 "1|1" "0/0" "0/0"
## HiC_scaffold_21_22250857 "1/1" NA "0/0"
## HiC_scaffold_21_22250866 "0|1" NA "0/0"
## HiC_scaffold_21_22257737 "1|1" "0/1" "0|1"
## HiC_scaffold_21_22644667 "1|1" "1|1" NA
## HiC_scaffold_21_22644673 "1|1" "1|1" NA
## HiC_scaffold_21_22666888 "0/1" "1/1" NA
## HiC_scaffold_21_23905416 "0/0" "1|1" "1|1"
## HiC_scaffold_21_23981651 "0/0" NA NA
## HiC_scaffold_21_24287068 "0/1" "0/0" NA
## HiC_scaffold_21_30798434 "0/0" "0/0" NA
## HiC_scaffold_21_35006232 "1/1" NA "1/1"
## HiC_scaffold_21_35779294 "1/1" "0/0" "0/1"
## HiC_scaffold_22_124910 "1/1" "0/1" "0/1"
## HiC_scaffold_22_751023 "0/1" "0|1" "0/1"
## HiC_scaffold_22_1042644 "0|1" "1|1" "0/0"
## HiC_scaffold_22_1044708 "0/1" "0/1" "1/1"
## HiC_scaffold_22_2174911 "0/1" "0/0" "0/0"
## HiC_scaffold_22_3431122 "0|1" "1|1" "0/0"
## HiC_scaffold_22_3446787 "0|0" "0/0" "0/0"
## HiC_scaffold_22_3451756 "1/1" "0/0" NA
## HiC_scaffold_22_3720435 "1/1" "1/1" NA
## HiC_scaffold_22_4065466 "1|1" "1|1" NA
## HiC_scaffold_22_4739889 "2/2" "0/0" "0/0"
## HiC_scaffold_22_4918263 NA "1|1" "1|1"
## HiC_scaffold_22_5750008 "1/1" "1/1" "1/1"
## HiC_scaffold_22_5769942 NA "0/0" "1/1"
## HiC_scaffold_22_28264522 "0/0" "0/1" "0/0"
## HiC_scaffold_22_28265115 "1/1" NA NA
## HiC_scaffold_22_29205851 "0/1" NA "1/1"
## HiC_scaffold_22_29822340 "1/1" "1/1" NA
## HiC_scaffold_22_30797357 "0/0" "1/1" "0/0"
## HiC_scaffold_22_32042610 "1|1" "1|1" "1|1"
## HiC_scaffold_23_11215327 "0/0" "1/1" NA
## HiC_scaffold_23_27081333 "0/0" NA "1/1"
## HiC_scaffold_23_28672255 "0/0" "1/1" "0/0"
## HiC_scaffold_23_29218828 "1/1" "1/1" "0/0"
## HiC_scaffold_23_32528768 "0/0" "1|1" "1|1"
## HiC_scaffold_23_32669383 "1/1" "0/0" "0/1"
## HiC_scaffold_23_33199663 "0/0" "1|1" "1/1"
## HiC_scaffold_23_33245843 "1/1" "0/1" "0/0"
## HiC_scaffold_23_40824545 "0/0" "0/0" NA
## HiC_scaffold_23_41504669 "0/1" "1/1" NA
## HiC_scaffold_24_16622654 "1|1" "1/1" "0/0"
## HiC_scaffold_24_16622681 "1|1" "1/1" "0/0"
## HiC_scaffold_24_19851560 NA "1/1" "0|1"
## HiC_scaffold_24_20590563 "0/0" NA "1/1"
## HiC_scaffold_24_27745754 NA "0/0" NA
## HiC_scaffold_24_28763699 "1|1" "1|1" NA
## HiC_scaffold_24_28763703 "1|1" "1|1" NA
## HiC_scaffold_25_4135969 "0/0" NA "0/1"
## HiC_scaffold_25_4201677 "0/0" "1/1" NA
## HiC_scaffold_25_5872831 "0/0" "0/0" "0/0"
## HiC_scaffold_25_6879627 "1/1" "0/1" "0/0"
## HiC_scaffold_25_8172813 "0/0" "1/1" "1/1"
## HiC_scaffold_25_9969507 "1|1" "0/0" NA
## HiC_scaffold_25_10691336 "0/0" "1/1" NA
## HiC_scaffold_25_21286462 "0/0" "1/1" NA
## HiC_scaffold_26_4086662 "0|1" "1/1" "0/0"
## HiC_scaffold_26_7539671 "0/0" "0/0" "0/0"
## HiC_scaffold_26_8348511 "0/1" "1/1" "0/1"
## HiC_scaffold_26_9043748 "0|1" "0/0" NA
## HiC_scaffold_26_9045655 NA "0/0" "1|1"
## HiC_scaffold_26_11253181 "0/0" "0/0" "0/0"
## HiC_scaffold_26_17828344 NA "1/1" NA
## HiC_scaffold_26_17932520 "1/1" NA "1/1"
## HiC_scaffold_26_17941459 NA "0/1" "1/1"
## HiC_scaffold_26_17960877 "1/1" NA "1/1"
## HiC_scaffold_26_18284041 "1/1" "0/1" "0/1"
## HiC_scaffold_26_18288701 "1|1" NA "1|1"
## HiC_scaffold_26_18294422 NA "1|1" "0/1"
## HiC_scaffold_26_21307365 "0/0" "0/1" "1/1"
## HiC_scaffold_26_22159924 "1/1" "1/1" "0/1"
## HiC_scaffold_26_22161535 NA "0/1" "1/1"
## HiC_scaffold_26_24794176 "1/1" "0/1" NA
## HiC_scaffold_26_28538113 "1|1" "1|1" "0|1"
## HiC_scaffold_26_29031357 NA "1/1" "0/0"
## HiC_scaffold_26_29163462 "0/0" "1/1" NA
## HiC_scaffold_26_42631018 "0/1" "0/0" NA
## HiC_scaffold_26_42634814 "1/1" "1/1" NA
## HiC_scaffold_26_43483190 "0/0" "0/0" "0/0"
## HiC_scaffold_26_49955889 "0/0" "0/1" "0/1"
## HiC_scaffold_26_58342510 "1|1" "1|1" NA
## HiC_scaffold_27_1496120 "1|1" NA NA
## HiC_scaffold_27_1947057 "0/1" "0/1" "0/0"
## HiC_scaffold_27_2359058 "0/0" NA NA
## HiC_scaffold_27_2699645 NA "1/1" NA
## HiC_scaffold_27_4425475 NA "1|1" NA
## HiC_scaffold_27_7539469 "0/0" "1|1" "0/0"
## HiC_scaffold_27_7777122 "0/0" "0/0" "0|1"
## HiC_scaffold_27_16657070 "0/0" NA "0/0"
## HiC_scaffold_27_24539255 "0/0" "0|1" "0|1"
## HiC_scaffold_27_34642359 "0/0" "0/0" NA
## HiC_scaffold_27_34647277 "0/0" "0/0" "2|2"
## HiC_scaffold_27_35380535 "0/1" "1/1" NA
## HiC_scaffold_27_35383230 "1|1" "0/0" NA
## HiC_scaffold_28_21261390 "0/0" "1|1" NA
## HiC_scaffold_28_24490442 "0/0" "0/0" "0/1"
## HiC_scaffold_28_25601927 "1/1" "1/1" "0/0"
## HiC_scaffold_28_31793968 "2|2" "1/1" "0/0"
## HiC_scaffold_28_32126687 "0/0" "0/0" NA
## HiC_scaffold_28_34779518 "1/1" "0/0" "1/1"
## HiC_scaffold_28_36042491 "0/0" "1/1" NA
## HiC_scaffold_28_36692361 "0/0" "0/0" "0/0"
## HiC_scaffold_28_38672993 "0/0" "1|1" "0|1"
## HiC_scaffold_28_39640526 "0/1" "0/0" NA
## HiC_scaffold_28_40169242 "0/0" "1/1" "1/1"
## HiC_scaffold_28_41059640 "1|1" "1|1" "1|1"
## HiC_scaffold_28_42514830 NA "0/0" "1/1"
## HiC_scaffold_28_42601570 "0/0" "0/1" NA
## HiC_scaffold_28_42601585 "0/0" "0/1" NA
## HiC_scaffold_28_43018803 "1/1" NA "0/0"
## HiC_scaffold_28_43036165 NA "0/0" NA
## HiC_scaffold_29_344317 "1/1" NA NA
## HiC_scaffold_29_3811176 "1/1" NA "0/1"
## HiC_scaffold_29_6073993 "1|1" "0/0" NA
## HiC_scaffold_29_6415222 "0/0" "0/0" "0/0"
## HiC_scaffold_29_8224424 "0/0" "0/1" "0/0"
## HiC_scaffold_29_11153624 "1/1" "0/0" "1/1"
## HiC_scaffold_29_11153712 "1/1" "0/0" "0/0"
## HiC_scaffold_29_11167966 "0/0" "1|1" "0/0"
## HiC_scaffold_29_11491468 "1/1" "0/0" "0/1"
## HiC_scaffold_29_12103558 "0/0" "0/0" NA
## HiC_scaffold_29_14279322 "0/0" "0/0" "0/1"
## HiC_scaffold_29_14913907 "0/0" "0/0" "1|1"
## HiC_scaffold_29_16378276 "0/1" "1/1" NA
## HiC_scaffold_29_20635937 "0/1" NA NA
## HiC_scaffold_29_20636787 NA "0/0" NA
## HiC_scaffold_29_22560215 "0/0" "1/1" NA
## HiC_scaffold_29_22561144 NA "1/1" NA
## HiC_scaffold_29_24017849 "0/0" "0/0" "0/0"
## HiC_scaffold_29_31603590 "0/0" "0|1" NA
## HiC_scaffold_3_21670751 "1/1" NA NA
## HiC_scaffold_3_24747014 "0/0" "0/1" NA
## HiC_scaffold_3_27861792 "0/0" NA "0/0"
## HiC_scaffold_3_28057869 NA "0/0" NA
## HiC_scaffold_3_28441436 "1/1" "0/1" "0/0"
## HiC_scaffold_3_28694380 "1|1" NA "0/1"
## HiC_scaffold_3_31361023 "0/0" "0/0" "0/1"
## HiC_scaffold_3_31960572 "1|1" NA "0/1"
## HiC_scaffold_3_32157169 "0/0" "0/0" "1/1"
## HiC_scaffold_3_32159152 "1/1" "0/0" NA
## HiC_scaffold_3_34124237 NA "0/0" "0/0"
## HiC_scaffold_30_14199802 "0/1" "1/1" NA
## HiC_scaffold_30_16052331 "1/1" "1/1" NA
## HiC_scaffold_30_19914075 "1/1" "1/1" NA
## HiC_scaffold_30_20688783 NA "1/1" NA
## HiC_scaffold_30_21446076 NA "0/0" "0/0"
## HiC_scaffold_30_21598563 "1/1" "0/0" "0/0"
## HiC_scaffold_30_22155728 NA "0/0" "0/0"
## HiC_scaffold_31_687411 "0/1" "0/0" NA
## HiC_scaffold_31_3224722 "0/0" "0/0" "1/1"
## HiC_scaffold_31_3574854 "0/1" "0/1" "0/0"
## HiC_scaffold_31_5899551 "1|1" NA "1|1"
## HiC_scaffold_31_5911491 "0/0" "0/0" NA
## HiC_scaffold_31_6297680 "0/0" "1/1" "0/1"
## HiC_scaffold_31_12394016 "0/0" "1|1" NA
## HiC_scaffold_31_12394040 "1|1" "0/0" NA
## HiC_scaffold_31_18612650 "1/1" NA "0/1"
## HiC_scaffold_32_4446859 "0/1" "1/1" NA
## HiC_scaffold_32_5274796 "0/0" "0/0" NA
## HiC_scaffold_32_5275108 "1/1" "0/0" NA
## HiC_scaffold_32_5282358 "1/1" NA NA
## HiC_scaffold_32_5450203 "1|1" NA NA
## HiC_scaffold_32_44200178 "0/0" NA NA
## HiC_scaffold_33_638523 "1|1" NA "0/0"
## HiC_scaffold_33_44489563 "0/0" NA NA
## HiC_scaffold_33_44489988 NA "1/1" NA
## HiC_scaffold_33_47080180 "0/0" NA NA
## HiC_scaffold_33_47495907 "0/0" NA "0/1"
## HiC_scaffold_33_51865876 "0/0" "1/1" "0/0"
## HiC_scaffold_34_1096982 "0/0" "0/1" NA
## HiC_scaffold_34_6091943 "1|1" "1|1" "0/0"
## HiC_scaffold_34_6100160 "0/0" "0/0" "1|1"
## HiC_scaffold_34_24368584 "0/0" "0/0" "0/0"
## HiC_scaffold_35_3233120 "0/0" "0/1" NA
## HiC_scaffold_35_3253574 "0/1" NA NA
## HiC_scaffold_35_5512296 "1/1" "0/0" NA
## HiC_scaffold_35_15114788 "1/1" "0/0" NA
## HiC_scaffold_35_21214090 "0/0" "0/0" "0/1"
## HiC_scaffold_35_21462564 "0/0" NA "1/1"
## HiC_scaffold_35_22746783 "0/0" NA "0/0"
## HiC_scaffold_35_22747085 "1|1" "1|1" NA
## HiC_scaffold_35_23059580 "1/1" "0/0" NA
## HiC_scaffold_35_23158882 "1/1" "1/1" "0/0"
## HiC_scaffold_35_23261143 NA "1/1" NA
## HiC_scaffold_35_24403602 "0/0" "0/0" "1/1"
## HiC_scaffold_35_24403620 "0/0" "1/1" "1/1"
## HiC_scaffold_35_24993986 NA "0/0" "0/0"
## HiC_scaffold_35_24993998 NA NA NA
## HiC_scaffold_36_1538038 "0/0" "0/1" "0/1"
## HiC_scaffold_36_2464728 "1/1" "0|1" "1|1"
## HiC_scaffold_36_5489050 "0/0" "0/0" "0/0"
## HiC_scaffold_36_9673981 "0/0" "1|1" "0/1"
## HiC_scaffold_36_9674127 "1/1" "1/1" "0/0"
## HiC_scaffold_36_9674756 "1/1" "1/1" NA
## HiC_scaffold_36_9676329 "1/1" "1/1" "1/1"
## HiC_scaffold_36_12304516 "0/1" "0/0" "0/0"
## HiC_scaffold_36_12515555 "0/0" NA "0/0"
## HiC_scaffold_36_13092647 "1|1" "0/0" "1|1"
## HiC_scaffold_36_13766994 "0/1" NA "1/1"
## HiC_scaffold_36_14567741 "0/1" "0/1" NA
## HiC_scaffold_36_15530578 "1|1" NA "0/1"
## HiC_scaffold_37_679894 "1/1" "1/1" NA
## HiC_scaffold_37_916693 "0|1" "1/1" "1|1"
## HiC_scaffold_37_928146 "0/1" "0/1" NA
## HiC_scaffold_37_1256768 "0/0" "0/0" "1|1"
## HiC_scaffold_37_1270034 "0/1" "1/1" "0/0"
## HiC_scaffold_37_1770997 "0/0" NA "0/0"
## HiC_scaffold_37_1798298 "1/1" "1/1" "0/1"
## HiC_scaffold_37_2010342 "1|1" "0/0" "1|1"
## HiC_scaffold_37_2141526 "0/0" NA "0/0"
## HiC_scaffold_37_3952190 NA "0/0" "0/0"
## HiC_scaffold_37_3952215 NA "0/0" "0/0"
## HiC_scaffold_37_9915037 "1/1" "1/1" "0/1"
## HiC_scaffold_38_5383430 "1/1" "1/1" NA
## HiC_scaffold_38_5668363 NA "1/1" NA
## HiC_scaffold_38_5879849 NA "0/1" NA
## HiC_scaffold_38_5880155 "1/1" "0/0" "0/0"
## HiC_scaffold_38_10612790 "1/1" "1/1" "1/1"
## HiC_scaffold_38_11940240 "0/0" NA NA
## HiC_scaffold_38_12878826 "0|1" "1|1" "0/1"
## HiC_scaffold_38_12959698 NA NA "0/0"
## HiC_scaffold_38_13087368 "1/1" "1/1" NA
## HiC_scaffold_38_13480648 "1|1" "1/1" "1|1"
## HiC_scaffold_38_13965243 NA NA "1/1"
## HiC_scaffold_38_14089955 "0/1" "0/0" "0/0"
## HiC_scaffold_38_14408072 "0/0" "1|1" "0/0"
## HiC_scaffold_38_14931216 "1/1" "0/1" "1/1"
## HiC_scaffold_38_14978356 "0|1" "0/0" NA
## HiC_scaffold_38_14978367 "0|1" "0/0" NA
## HiC_scaffold_38_15292863 "0/0" "0/0" NA
## HiC_scaffold_38_15306135 "0/0" "0/0" NA
## HiC_scaffold_38_16077506 "1|1" "1|1" "0/0"
## HiC_scaffold_38_16138965 "0/0" "1/1" "1/1"
## HiC_scaffold_38_16226040 "1/1" "1/1" "0/1"
## HiC_scaffold_39_1393769 NA "0/0" "0/0"
## HiC_scaffold_39_2014970 "0/0" "0/0" NA
## HiC_scaffold_39_2014982 "0/0" "0/0" "0/0"
## HiC_scaffold_39_2014985 "0/0" "0/0" "0/0"
## HiC_scaffold_39_2426443 "0/1" "0/0" "1/1"
## HiC_scaffold_39_2485330 "0/0" "1|1" "0/0"
## HiC_scaffold_39_3350506 "0/0" "1|1" "0/0"
## HiC_scaffold_39_5897388 "1|1" "0/0" "0/0"
## HiC_scaffold_39_17631133 "0/1" "0/0" "1/1"
## HiC_scaffold_4_12107187 "0/0" "0/0" "0/0"
## HiC_scaffold_4_18241670 "1|1" "1|1" NA
## HiC_scaffold_4_18241723 "1|1" "1/1" NA
## HiC_scaffold_4_22418566 "0|1" "0|1" NA
## HiC_scaffold_4_27899990 NA "0/0" NA
## HiC_scaffold_4_35575118 "0/0" "1/1" "0/1"
## HiC_scaffold_4_38000967 "1/1" "1/1" "1/1"
## HiC_scaffold_4_50654021 "1|1" "0/0" "0/0"
## HiC_scaffold_40_2243415 "0/0" "0/0" "0/0"
## HiC_scaffold_40_3000572 "1/1" NA "0/0"
## HiC_scaffold_40_3014177 "1|1" NA "0/1"
## HiC_scaffold_40_3027900 "0/0" "1/1" "0/1"
## HiC_scaffold_40_3143834 "0/0" "0/0" "0/1"
## HiC_scaffold_40_3843942 "0/0" "1|1" "0/0"
## HiC_scaffold_40_3847620 "1|1" NA "0/0"
## HiC_scaffold_40_3891007 "0/0" "0|0" "1/1"
## HiC_scaffold_40_3920667 "2/2" "2/2" "2/2"
## HiC_scaffold_40_4177963 "0/0" NA "0/0"
## HiC_scaffold_40_4819107 "1/1" "1/1" NA
## HiC_scaffold_40_4819834 "0/0" "0/0" NA
## HiC_scaffold_40_5788271 "0/0" "0/0" NA
## HiC_scaffold_40_5965269 NA "0/0" NA
## HiC_scaffold_40_6204154 "0/1" "0/0" "0/0"
## HiC_scaffold_40_8387917 "1/1" "0/0" NA
## HiC_scaffold_41_3235384 "2/2" "0/0" "0/0"
## HiC_scaffold_41_3583000 "1/1" "1/1" "0/0"
## HiC_scaffold_41_5334504 "1/1" "0/0" "1/1"
## HiC_scaffold_41_5387631 "0/0" "1|1" "1|1"
## HiC_scaffold_41_6423426 "0/0" "0/0" "1/1"
## HiC_scaffold_41_14359947 "0/0" "0/0" "0/0"
## HiC_scaffold_41_24007593 "0/0" NA "1|1"
## HiC_scaffold_41_26225447 "1|1" "1|1" "1|1"
## HiC_scaffold_41_28626484 "1/1" "1/1" "1/1"
## HiC_scaffold_41_28660620 NA NA "0/0"
## HiC_scaffold_41_31007688 "0/1" "0/1" "0/0"
## HiC_scaffold_42_1131084 "0/0" "0/0" NA
## HiC_scaffold_42_1818523 NA "0/1" NA
## HiC_scaffold_42_2165002 "2/2" "0/0" NA
## HiC_scaffold_42_2711332 "0/0" "1|1" "1|1"
## HiC_scaffold_42_6142699 "0/0" "1/1" NA
## HiC_scaffold_42_6744976 "0/0" NA NA
## HiC_scaffold_42_8066919 "0/0" "1|1" "0/0"
## HiC_scaffold_42_8068292 "0|1" "1|1" NA
## HiC_scaffold_42_12487888 "0/0" "0/0" "0|1"
## HiC_scaffold_42_41366687 "0/1" "0|1" "1/1"
## HiC_scaffold_42_47313337 "0/0" "0/0" NA
## HiC_scaffold_42_47313338 "0/0" "0/0" NA
## HiC_scaffold_42_50784971 "1|1" NA NA
## HiC_scaffold_42_50784977 "1|1" NA NA
## HiC_scaffold_42_50784981 "0/0" "0/0" NA
## HiC_scaffold_42_51916989 "1/1" "1/1" "1/1"
## HiC_scaffold_43_3842003 "1/1" "1/1" "1/1"
## HiC_scaffold_43_14140861 NA NA NA
## HiC_scaffold_43_15053605 "1/1" "1/1" "1|1"
## HiC_scaffold_43_17289945 "0/0" "1|1" NA
## HiC_scaffold_43_29967704 "1/1" "0/1" "0/0"
## HiC_scaffold_43_35745831 "0/0" "0/1" "0|1"
## HiC_scaffold_43_37627949 "1/1" "0|1" NA
## HiC_scaffold_43_37628126 "1/1" "1/1" "0/0"
## HiC_scaffold_43_44017118 NA "0/0" "0/0"
## HiC_scaffold_43_55124138 NA NA "0/0"
## HiC_scaffold_43_60107326 "1|1" "0/0" "1|1"
## HiC_scaffold_43_61359386 "0/0" "1/1" "1/1"
## HiC_scaffold_43_61702593 "1|1" "0/0" "1|1"
## HiC_scaffold_43_61702606 "1|1" "0/0" "1|1"
## HiC_scaffold_43_61702721 NA "1|1" "0/0"
## HiC_scaffold_43_61702738 NA "0/0" "1/1"
## HiC_scaffold_43_62511703 "1|1" "1|1" "1|1"
## HiC_scaffold_43_64069457 "0/0" "0/0" NA
## HiC_scaffold_43_64577269 NA NA NA
## HiC_scaffold_44_1920144 "0/0" "1|1" "1|1"
## HiC_scaffold_44_2148035 "0/0" "1/1" "0/1"
## HiC_scaffold_44_2568167 "0/0" NA NA
## HiC_scaffold_45_4180070 "0/1" "1/1" "1/1"
## HiC_scaffold_45_4797754 "2/2" "0/0" "1/2"
## HiC_scaffold_45_5911123 "0|1" "1|1" "0/1"
## HiC_scaffold_45_6958990 "1/1" "0/1" "1/1"
## HiC_scaffold_45_8516216 NA "1|1" NA
## HiC_scaffold_45_10191213 NA "0/1" "1/1"
## HiC_scaffold_45_12005885 "0/0" "0/1" "0/1"
## HiC_scaffold_45_12006766 "1|1" "0/0" NA
## HiC_scaffold_45_24736172 "1/1" "0/0" "0/0"
## HiC_scaffold_45_24739830 "1|1" "0/0" "0/0"
## HiC_scaffold_46_9691567 NA "0/0" "0/1"
## HiC_scaffold_46_17380257 "0/0" NA NA
## HiC_scaffold_46_18387147 NA "0|1" NA
## HiC_scaffold_46_37092355 "0/0" "0|1" "0|1"
## HiC_scaffold_46_39183624 NA "1/1" "0/0"
## HiC_scaffold_46_39390547 "0/0" NA "0/0"
## HiC_scaffold_46_42964941 NA NA "0/0"
## HiC_scaffold_46_42986653 "1/1" "0/1" NA
## HiC_scaffold_46_52074364 "1|1" "1|1" NA
## HiC_scaffold_46_54255667 NA "1/1" "0/1"
## HiC_scaffold_47_3750532 NA "0/0" "1/1"
## HiC_scaffold_47_3751345 "0|1" "0/0" "0/0"
## HiC_scaffold_47_15400639 "1|1" NA NA
## HiC_scaffold_47_24072414 "0/0" "1/1" "0/0"
## HiC_scaffold_47_25273825 "0/0" "1|1" "1|1"
## HiC_scaffold_48_8752752 "0/0" "0/1" "0/0"
## HiC_scaffold_48_10765920 "0/1" NA "1/1"
## HiC_scaffold_48_16077918 "0|1" "1|1" NA
## HiC_scaffold_48_16077940 "0|1" "1|1" NA
## HiC_scaffold_48_16411609 "1/1" NA "1/1"
## HiC_scaffold_48_19972580 "0/1" "0/0" "0/1"
## HiC_scaffold_48_23493079 "1|1" "1|1" "0/0"
## HiC_scaffold_48_23597210 "1|1" "0/1" "1|1"
## HiC_scaffold_48_24478493 "0/0" NA NA
## HiC_scaffold_48_24881148 "0/0" "0/1" "0/0"
## HiC_scaffold_48_25865723 "1|1" "1/1" "1/1"
## HiC_scaffold_48_25984068 "1|1" "0/0" NA
## HiC_scaffold_48_25989079 "1/1" "1/1" NA
## HiC_scaffold_48_30601375 NA "0/0" NA
## HiC_scaffold_48_31662115 "0/1" "1/1" NA
## HiC_scaffold_48_41971562 "1/1" "0/1" "1/1"
## HiC_scaffold_49_3392801 "0/0" "1|1" NA
## HiC_scaffold_49_6101692 "1/1" "1/1" "1/1"
## HiC_scaffold_49_7996315 "1/1" "0/0" NA
## HiC_scaffold_49_9470474 "1/1" "1/1" "1/1"
## HiC_scaffold_49_9886007 "0/1" "0/0" "0/0"
## HiC_scaffold_49_12592113 "0/0" "0/0" NA
## HiC_scaffold_49_12741575 "0/0" "0/0" "0/0"
## HiC_scaffold_49_15135019 "1/1" "1/1" NA
## HiC_scaffold_49_25906219 "0/0" NA NA
## HiC_scaffold_49_26614199 "1/1" "1/1" NA
## HiC_scaffold_49_26655554 "0/0" "0|1" NA
## HiC_scaffold_49_37568341 "1/1" NA NA
## HiC_scaffold_49_37568353 "1/1" NA NA
## HiC_scaffold_49_40002255 "1|1" "1|1" "0/0"
## HiC_scaffold_49_40003229 "1|1" "0/0" "0/0"
## HiC_scaffold_49_42966376 NA "1|1" NA
## HiC_scaffold_5_801252 NA "1/1" NA
## HiC_scaffold_5_1446603 "1|1" "0|1" "0|1"
## HiC_scaffold_5_1446611 "1|1" "0|1" "0|1"
## HiC_scaffold_5_1530759 "0/1" "1|1" NA
## HiC_scaffold_5_1539275 "0/0" "0/0" NA
## HiC_scaffold_5_1789576 "0/0" "0/0" "0/0"
## HiC_scaffold_5_1808197 "0/1" "0/0" "0/1"
## HiC_scaffold_5_1808204 "0/1" "1/1" "0/1"
## HiC_scaffold_5_1943895 "1|1" "1|1" "0/1"
## HiC_scaffold_5_1944469 "1/1" "1/1" "0/1"
## HiC_scaffold_5_2857283 "1/1" "0/0" "1/1"
## HiC_scaffold_5_4061378 "0/0" "0/1" "0/0"
## HiC_scaffold_5_4340647 "0/0" "1|1" "1|1"
## HiC_scaffold_5_4435246 "1/1" "0/1" "0/1"
## HiC_scaffold_5_8868783 "0/1" NA "1|1"
## HiC_scaffold_50_4315969 "1/1" "0/0" NA
## HiC_scaffold_50_11652296 "0/1" "1|1" "0/0"
## HiC_scaffold_50_11657309 "0/0" "0/0" NA
## HiC_scaffold_50_15521027 NA NA "0/0"
## HiC_scaffold_50_21050962 "1/1" "0/0" "1/1"
## HiC_scaffold_50_23686202 "1|1" "1|1" "0/1"
## HiC_scaffold_50_27393462 "1|1" "0/0" "0|1"
## HiC_scaffold_50_42586883 "1/1" "1/1" NA
## HiC_scaffold_50_45087211 NA "1/1" NA
## HiC_scaffold_50_49796550 "1/1" "1/1" "1/1"
## HiC_scaffold_50_54383367 "0/0" "0/0" NA
## HiC_scaffold_50_63318678 NA "1/1" "1/1"
## HiC_scaffold_51_3521000 "1/1" "0/0" "1/1"
## HiC_scaffold_51_4681905 "0/1" "1/1" NA
## HiC_scaffold_51_6305599 "0/0" "0/0" NA
## HiC_scaffold_51_8530818 "1|1" "0/0" NA
## HiC_scaffold_51_11653312 "1/1" "0/0" "0/1"
## HiC_scaffold_51_13138547 "1/1" "1/1" "1/1"
## HiC_scaffold_51_14457091 "1|1" "0/0" NA
## HiC_scaffold_51_15512668 "1/1" "0/1" NA
## HiC_scaffold_51_17816346 "0/0" "1/1" "0/0"
## HiC_scaffold_51_19997934 "1|1" "1|1" "0/0"
## HiC_scaffold_51_19997936 "1|1" "1|1" "0/0"
## HiC_scaffold_51_20870773 "0/0" "1|1" "0/1"
## HiC_scaffold_51_26660104 "0|1" "0|1" "0|1"
## HiC_scaffold_51_40727521 "1|1" "0/0" "1|1"
## HiC_scaffold_51_40892841 "1/1" "0/0" "0/0"
## HiC_scaffold_51_41717519 "1/1" "0/1" "0/0"
## HiC_scaffold_51_42547638 "1/1" NA "0/1"
## HiC_scaffold_52_3335804 "0/0" "1/1" "1/1"
## HiC_scaffold_52_4149130 "0/1" NA "0/0"
## HiC_scaffold_52_6893679 "1|1" "1/1" NA
## HiC_scaffold_52_13155416 "0|1" "1/1" "0/0"
## HiC_scaffold_52_13155437 "1|1" "1|1" "0/0"
## HiC_scaffold_52_13155442 "1|1" "1|1" "0/0"
## HiC_scaffold_52_14885688 "0/1" "0/1" NA
## HiC_scaffold_52_14895078 "1/1" "0/0" NA
## HiC_scaffold_52_15141791 "1/1" "0/1" NA
## HiC_scaffold_52_15743051 "0/0" "0/0" "0/0"
## HiC_scaffold_52_15760201 "0/0" "0/1" "0/1"
## HiC_scaffold_52_15834589 NA NA NA
## HiC_scaffold_52_15841769 "0/1" NA "0/1"
## HiC_scaffold_52_15862421 "0|1" NA "0/0"
## HiC_scaffold_52_15970970 NA "0/0" "0/0"
## HiC_scaffold_52_16275237 "1/1" "0/1" "0/0"
## HiC_scaffold_52_16275240 "0/0" "0|1" NA
## HiC_scaffold_52_16275290 "0/0" "0/0" NA
## HiC_scaffold_52_16524164 "0|1" NA "0/0"
## HiC_scaffold_52_16524572 "1/1" "1/1" "1/1"
## HiC_scaffold_52_16525647 "1/1" "1|1" NA
## HiC_scaffold_52_16637047 "0/0" "1|1" NA
## HiC_scaffold_52_17202127 "0/0" "1|1" "0/0"
## HiC_scaffold_52_17207724 NA "1/1" "0/0"
## HiC_scaffold_52_17508820 "1|1" "1|1" "1|1"
## HiC_scaffold_52_17547593 "0/0" "0/1" "0/0"
## HiC_scaffold_52_17551239 "1/1" "1/1" "0/0"
## HiC_scaffold_52_17560696 "1|1" NA "0|1"
## HiC_scaffold_52_17560699 "1|1" NA "0|1"
## HiC_scaffold_52_17741250 "1/1" NA "0/0"
## HiC_scaffold_52_17742260 NA "1|1" "1|1"
## HiC_scaffold_52_18340578 NA "1/1" "1/1"
## HiC_scaffold_52_18415911 NA "1/1" "0/0"
## HiC_scaffold_52_22189517 "0/0" NA "0/0"
## HiC_scaffold_52_22526592 "0/0" "0/0" NA
## HiC_scaffold_52_26393471 NA "0/0" "0/0"
## HiC_scaffold_52_26799380 "1/1" NA "0/0"
## HiC_scaffold_52_31871931 NA NA NA
## HiC_scaffold_52_31874283 "1/1" NA NA
## HiC_scaffold_52_31874287 "0/0" NA "0/0"
## HiC_scaffold_52_32161053 "1|1" "1|1" "1|1"
## HiC_scaffold_52_33165557 "0/0" "0/0" "0/0"
## HiC_scaffold_52_33897620 NA "0/0" "0/0"
## HiC_scaffold_52_34763156 "0|1" "1/1" "0/1"
## HiC_scaffold_52_34763171 "0/1" "0/1" "0/1"
## HiC_scaffold_52_35174755 "0/0" "0/1" "0/0"
## HiC_scaffold_52_35608453 "0/1" "0/1" "0/0"
## HiC_scaffold_52_35608470 "0/1" "0/1" "0/0"
## HiC_scaffold_52_39464728 "0/0" "1|1" "0/0"
## HiC_scaffold_52_42141354 "0/1" NA "0/0"
## HiC_scaffold_52_44675725 "1/1" "1/1" "1/1"
## HiC_scaffold_52_49935920 "1/1" "0/0" "1|1"
## HiC_scaffold_53_21789524 "1/1" "0/0" NA
## HiC_scaffold_53_25168042 "0/0" "1/1" NA
## HiC_scaffold_53_26398989 "0/0" "1|1" "1|1"
## HiC_scaffold_53_26398992 "0/0" "1|1" "1|1"
## HiC_scaffold_53_26398994 "0/0" "1|1" "1|1"
## HiC_scaffold_53_26549665 "0/0" "0/0" NA
## HiC_scaffold_53_29227676 NA "0|1" "0|1"
## HiC_scaffold_53_31250349 "1/1" NA "1/1"
## HiC_scaffold_54_530581 "1|1" "1|1" "1|1"
## HiC_scaffold_54_794095 NA "0/0" "1|1"
## HiC_scaffold_54_1171109 NA "0|1" NA
## HiC_scaffold_54_1378956 "0/1" "1/1" "0/0"
## HiC_scaffold_54_1380539 "1/1" NA NA
## HiC_scaffold_54_3045015 "0/1" "0/1" "1/1"
## HiC_scaffold_54_3185987 "0/1" "0/0" "0/0"
## HiC_scaffold_54_4401098 "0/0" NA NA
## HiC_scaffold_54_5595903 "0/0" "1/1" "0/0"
## HiC_scaffold_54_5595921 "0/0" "0/0" "0/0"
## HiC_scaffold_54_5595928 "1|1" "0/0" NA
## HiC_scaffold_54_5595949 NA "1/1" NA
## HiC_scaffold_54_6649662 "0/0" "0/1" "1/1"
## HiC_scaffold_54_8036734 "0/0" "0|0" "1|1"
## HiC_scaffold_54_9206614 "0/0" "0/1" "0/0"
## HiC_scaffold_54_35913192 "1/1" "0/0" "0/0"
## HiC_scaffold_54_35913282 "1|1" "1|1" "0/0"
## HiC_scaffold_54_35913283 "1|1" "1|1" "1/1"
## HiC_scaffold_55_1260491 NA "0/0" NA
## HiC_scaffold_55_3254027 "1/1" "1/1" "1/1"
## HiC_scaffold_55_3281985 "1|1" "1|1" "0|1"
## HiC_scaffold_55_5409544 "0/0" NA "0/0"
## HiC_scaffold_55_5411094 "1|1" "1|1" NA
## HiC_scaffold_55_5411115 "1/1" "1|1" NA
## HiC_scaffold_55_18121799 "0/0" "0/0" "1/1"
## HiC_scaffold_55_19605809 "1|1" "1|1" "0/0"
## HiC_scaffold_55_19605817 "1|1" "1|1" NA
## HiC_scaffold_55_19605821 "1|1" "1|1" "0/1"
## HiC_scaffold_55_20195204 NA "0/1" "0/0"
## HiC_scaffold_55_20886967 "0/1" "0/1" "0/0"
## HiC_scaffold_55_23222937 "0/0" "1/1" "1/1"
## HiC_scaffold_55_23626331 "0/1" "0/0" NA
## HiC_scaffold_55_24539590 NA "1/1" "0/0"
## HiC_scaffold_55_24585939 "0/0" "0|1" "1/1"
## HiC_scaffold_55_34174151 "0/1" "0/0" "0/0"
## HiC_scaffold_56_17874332 "0/0" "1/1" "1/1"
## HiC_scaffold_56_18635259 "1|1" "1|1" "0/0"
## HiC_scaffold_56_23654344 "0/0" "0/0" "1/1"
## HiC_scaffold_56_35850533 "0/0" NA NA
## HiC_scaffold_56_35850539 "0/0" NA NA
## HiC_scaffold_56_40813556 NA NA NA
## HiC_scaffold_56_53211633 NA "0/1" NA
## HiC_scaffold_56_60070829 "1/1" "0/0" "1/1"
## HiC_scaffold_56_73286017 "0/0" NA "0/1"
## HiC_scaffold_56_73829442 "0/0" "0/0" "0/0"
## HiC_scaffold_56_73829443 "0/0" "0/0" "0/0"
## HiC_scaffold_56_76060304 "0/0" "0/0" NA
## HiC_scaffold_57_25306408 "0/0" "1/1" "0/0"
## HiC_scaffold_57_29222385 NA "0/0" "0/0"
## HiC_scaffold_57_29592432 "1/1" "1/1" "0/1"
## HiC_scaffold_57_31472698 "0/0" "1/1" "0/0"
## HiC_scaffold_57_32371742 "0/1" NA NA
## HiC_scaffold_57_36495072 "0/0" "1/1" "1/1"
## HiC_scaffold_57_37286264 NA "1/1" "0/0"
## HiC_scaffold_57_38537415 "0/0" NA "0/1"
## HiC_scaffold_57_45438854 "1|1" NA "1|2"
## HiC_scaffold_57_52856874 NA "0/0" "0/1"
## HiC_scaffold_57_53575355 "0/0" "0/0" "1|1"
## HiC_scaffold_57_55856783 "0/0" NA NA
## HiC_scaffold_58_1362614 "1/1" "1/1" "0/1"
## HiC_scaffold_58_1432845 NA "1/1" NA
## HiC_scaffold_58_1541720 "0/0" "0/0" "1/1"
## HiC_scaffold_58_2777120 "0/0" "0/0" "1/1"
## HiC_scaffold_58_2973169 "1/1" NA "1/1"
## HiC_scaffold_58_3243043 "1/1" "0/0" "0/0"
## HiC_scaffold_58_4035282 "1/1" "0/0" "0/0"
## HiC_scaffold_58_5442157 "0/1" "1|1" NA
## HiC_scaffold_58_8004631 "0/0" "0/0" "0/1"
## HiC_scaffold_58_8058998 "1|1" "1|1" "0/0"
## HiC_scaffold_58_8932837 "0/0" "1/1" NA
## HiC_scaffold_58_14814944 "0/0" "1/1" "1/1"
## HiC_scaffold_58_15639988 "0/0" NA NA
## HiC_scaffold_58_15707198 "1/1" "1/1" "0/0"
## HiC_scaffold_58_15707258 NA "1/1" "0/0"
## HiC_scaffold_58_15710623 "0/0" "0/1" "0/0"
## HiC_scaffold_58_19155063 "0/0" "0/0" "0/0"
## HiC_scaffold_58_20224050 "0/0" "0/1" NA
## HiC_scaffold_58_38475355 "1/1" "1/1" NA
## HiC_scaffold_59_3979055 "1/1" "1/1" "1/1"
## HiC_scaffold_59_5071810 "1|1" NA NA
## HiC_scaffold_59_5349936 "0/0" "0/0" "0/0"
## HiC_scaffold_59_5350114 "0/0" "1/1" "0/0"
## HiC_scaffold_59_7738302 NA "1/1" NA
## HiC_scaffold_59_7738351 "0/0" NA NA
## HiC_scaffold_59_7958561 "1|1" "0/0" NA
## HiC_scaffold_59_9273798 "0/0" "0/0" "0/1"
## HiC_scaffold_59_50928099 "0/0" "0/1" "0/0"
## HiC_scaffold_59_52960060 "0/0" "0/0" "1|1"
## HiC_scaffold_6_10569023 "0/0" NA NA
## HiC_scaffold_6_10711445 "1/1" "0/0" "0/0"
## HiC_scaffold_6_13209200 "1|1" "1|1" "0/1"
## HiC_scaffold_6_13213107 NA "1/1" "0/0"
## HiC_scaffold_6_13311684 "1/1" "0/0" "1|1"
## HiC_scaffold_6_15670783 NA "0/0" "0/0"
## HiC_scaffold_6_19111232 NA "0/0" NA
## HiC_scaffold_6_32805498 "1/1" "1/1" NA
## HiC_scaffold_6_38793174 "0/0" "1|1" NA
## HiC_scaffold_6_41092101 NA "1|1" NA
## HiC_scaffold_6_41342933 NA "0/0" NA
## HiC_scaffold_6_47594508 "0/0" "1/1" NA
## HiC_scaffold_60_70878 "1|1" NA "1|1"
## HiC_scaffold_60_99549 "0/0" "0/0" NA
## HiC_scaffold_60_201823 "1/1" "1/1" "1/1"
## HiC_scaffold_60_712969 "1|1" "1|1" NA
## HiC_scaffold_60_744783 "0/1" "0/0" NA
## HiC_scaffold_60_744788 "0/1" "1|1" "0/0"
## HiC_scaffold_60_22142128 "1/1" "0/0" NA
## HiC_scaffold_60_27599770 "1/1" "1/1" NA
## HiC_scaffold_60_30608878 "1|1" "0/0" "1|1"
## HiC_scaffold_60_32657324 "0/0" "0/0" NA
## HiC_scaffold_60_32672580 "1/1" "1/1" "1/1"
## HiC_scaffold_60_38856893 "0/0" "0/0" "1/1"
## HiC_scaffold_60_39028335 "0/0" "1/1" "1/1"
## HiC_scaffold_60_40296869 "0/1" "0/0" "0/0"
## HiC_scaffold_60_42775723 "0/0" "0/0" "0/0"
## HiC_scaffold_60_44687906 "0/1" "0/0" NA
## HiC_scaffold_60_44804601 "1/1" "0/0" "0/0"
## HiC_scaffold_60_53696867 "1|1" "0|1" "0/0"
## HiC_scaffold_60_53696868 "1|1" "0|1" "0/0"
## HiC_scaffold_60_60651515 "0/0" "0/0" NA
## HiC_scaffold_60_70678462 "1/1" "1|1" NA
## HiC_scaffold_61_2205328 "1|1" "1/1" "0/0"
## HiC_scaffold_61_2491706 "1/1" "1/1" "1|1"
## HiC_scaffold_61_4009916 "0|1" "0/0" "0/0"
## HiC_scaffold_61_4062917 "0/0" "0/0" "0/0"
## HiC_scaffold_61_4122763 "1|1" "1|1" "0/0"
## HiC_scaffold_61_4216461 "0/1" "1/1" "1/1"
## HiC_scaffold_61_4325053 "0/0" "0/1" "1/1"
## HiC_scaffold_61_9004838 "0|1" "1/1" "0/1"
## HiC_scaffold_61_14635083 "0/1" "1|1" "1|1"
## HiC_scaffold_62_1128608 "1/1" "1/1" NA
## HiC_scaffold_62_11335200 NA "0|0" NA
## HiC_scaffold_62_18828476 "1/1" "1/1" "0/0"
## HiC_scaffold_62_21548870 "0|1" NA NA
## HiC_scaffold_62_23103274 "0/0" "0/0" NA
## HiC_scaffold_62_25793456 "0/0" "0/1" "0/0"
## HiC_scaffold_62_25887474 "0/0" "1/1" "1/1"
## HiC_scaffold_62_28516096 "1|1" "1|1" "1|1"
## HiC_scaffold_62_28516099 "1|1" "1|1" "1|1"
## HiC_scaffold_62_28818725 "1|1" NA NA
## HiC_scaffold_62_28818729 "0/0" NA NA
## HiC_scaffold_62_45207353 "0/0" "0/0" "0/0"
## HiC_scaffold_63_3092269 "1/1" "1/1" "1/1"
## HiC_scaffold_63_3977940 NA NA "0/0"
## HiC_scaffold_63_4084937 "0/0" "1/1" NA
## HiC_scaffold_63_4196326 "0/0" "1/1" "0/0"
## HiC_scaffold_63_6262453 "0/1" "0/1" "0/0"
## HiC_scaffold_63_6350204 "1/1" NA "1/1"
## HiC_scaffold_63_6458794 "0/1" "0/0" "0/0"
## HiC_scaffold_64_9162978 NA "0/0" NA
## HiC_scaffold_64_16876561 "0/0" "0/1" "0/0"
## HiC_scaffold_64_17543009 "1/1" NA "0/0"
## HiC_scaffold_64_18925356 "0/1" "0/1" "1/1"
## HiC_scaffold_64_19133050 "1|1" NA NA
## HiC_scaffold_64_19627769 "1|1" "1|1" NA
## HiC_scaffold_64_20477250 "0/1" "0/0" "1/1"
## HiC_scaffold_64_22816677 "0/0" "0/1" "0/1"
## HiC_scaffold_64_22954654 "0|1" "1|1" "1|1"
## HiC_scaffold_64_22954658 "0|1" "1|1" "1|1"
## HiC_scaffold_64_22954682 "0/1" "1/1" "1/1"
## HiC_scaffold_65_6829971 "0|1" "0/1" "0/0"
## HiC_scaffold_65_8071102 "0/1" "1/1" "1|1"
## HiC_scaffold_65_9023979 "0/0" NA "0/1"
## HiC_scaffold_65_9839671 "1/1" "0/0" "0/0"
## HiC_scaffold_65_10404778 "0/0" "1/1" NA
## HiC_scaffold_65_11327791 "1/1" "1/1" "1/1"
## HiC_scaffold_65_11332104 "1|1" NA "0/0"
## HiC_scaffold_65_34823822 "0/0" "0/0" "0/0"
## HiC_scaffold_65_51418017 "1/1" "1/1" "1/1"
## HiC_scaffold_65_54053979 "1|1" "1|1" "1|1"
## HiC_scaffold_65_57110875 "0/0" "1|1" "0/0"
## HiC_scaffold_66_15615363 "0/0" NA "0|1"
## HiC_scaffold_66_15672090 "1/1" "0/0" NA
## HiC_scaffold_66_17903445 NA NA NA
## HiC_scaffold_66_18298629 "0/0" NA "0/0"
## HiC_scaffold_66_19730676 "1|1" "1|1" "1|1"
## HiC_scaffold_66_23688768 "0/1" "0/0" NA
## HiC_scaffold_66_26614535 "0/1" "0/0" "0/0"
## HiC_scaffold_66_27445665 NA "1/1" "1|1"
## HiC_scaffold_66_29457165 "1|1" "1|1" NA
## HiC_scaffold_66_29457180 NA "1/1" "0/0"
## HiC_scaffold_66_30116287 "1/1" "1/1" NA
## HiC_scaffold_66_31603503 "1|1" "1|1" "0/0"
## HiC_scaffold_66_33261460 "0/0" "1/1" "0/0"
## HiC_scaffold_66_34138981 "0/0" "1/1" NA
## HiC_scaffold_66_34139020 "1/1" "0/0" NA
## HiC_scaffold_66_34142862 "0/1" "0/0" "0/0"
## HiC_scaffold_67_1404390 NA "0/0" NA
## HiC_scaffold_67_28493665 "1/1" "0/0" "0/0"
## HiC_scaffold_67_30243885 "0/1" "0/1" "1/1"
## HiC_scaffold_67_31511806 "0/0" NA NA
## HiC_scaffold_67_34638092 "1/1" NA "1/1"
## HiC_scaffold_67_37534720 "1/1" "1/1" "0/1"
## HiC_scaffold_67_39679546 "1/1" NA "1/1"
## HiC_scaffold_67_39854918 "1|1" NA NA
## HiC_scaffold_67_39860738 "0/0" "0/0" "1/1"
## HiC_scaffold_67_40331656 NA "0/0" "0/0"
## HiC_scaffold_67_40824747 "1|1" "1|1" NA
## HiC_scaffold_68_3438132 "1|1" "1|1" "1|1"
## HiC_scaffold_68_3438133 "1|1" "1|1" "1|1"
## HiC_scaffold_68_11206902 NA "0/0" "0/0"
## HiC_scaffold_68_32770607 "0/0" "1|1" NA
## HiC_scaffold_68_34016823 "0|2" "2|2" "0/2"
## HiC_scaffold_68_34020019 "0/1" NA "0/1"
## HiC_scaffold_68_40296057 "0/0" NA "0/0"
## HiC_scaffold_68_40296059 "0/0" NA "0/0"
## HiC_scaffold_68_65001879 "0/0" "1|1" NA
## HiC_scaffold_69_23311147 "0/0" "1|1" "0/0"
## HiC_scaffold_69_27351303 "0/0" "0/0" "0/0"
## HiC_scaffold_69_29437208 "1/1" "1/1" NA
## HiC_scaffold_69_33699381 "1|1" "1|1" "1|1"
## HiC_scaffold_69_40194698 "1/1" "0/0" "0/0"
## HiC_scaffold_69_48273575 "0/0" NA "1/1"
## HiC_scaffold_69_48348026 NA "1/1" "0/1"
## HiC_scaffold_69_48348034 "0/0" "0/0" "0/0"
## HiC_scaffold_69_49563252 "1/1" "1/1" "0/1"
## HiC_scaffold_69_49593952 "1/1" "0/0" "0/1"
## HiC_scaffold_69_49859037 "0/0" NA NA
## HiC_scaffold_69_51271238 "0/0" NA NA
## HiC_scaffold_69_51529836 "1/1" "1/1" NA
## HiC_scaffold_69_57313650 "1/1" "0/0" NA
## HiC_scaffold_69_57359194 "0/0" NA NA
## HiC_scaffold_6951_523650 "0/0" "0/1" "1|1"
## HiC_scaffold_6951_897126 "1|1" "1|1" "0/0"
## HiC_scaffold_6951_1134482 "0/0" "1|1" "1|1"
## HiC_scaffold_6951_2484960 "0/1" "0/0" "1/1"
## HiC_scaffold_6951_3301273 "1|1" "0/0" "1|1"
## HiC_scaffold_6951_3314609 "1/1" "1/1" "1/1"
## HiC_scaffold_6951_3945993 "0/1" "0/0" "0/0"
## HiC_scaffold_6958_218293 "0/0" NA "0/0"
## HiC_scaffold_6958_449143 "0/0" "1/1" "1/1"
## HiC_scaffold_7_351023 NA "1/1" NA
## HiC_scaffold_7_488024 "0/0" NA "0/0"
## HiC_scaffold_7_492663 NA "1/1" NA
## HiC_scaffold_7_693567 "0/0" "0/0" "0/0"
## HiC_scaffold_7_2379128 "0/0" "1/1" NA
## HiC_scaffold_7_3087721 "0/1" "1/1" NA
## HiC_scaffold_7_3394880 NA "1/1" NA
## HiC_scaffold_7_22247106 "0/0" "1|1" "1|1"
## HiC_scaffold_70_4632611 "1|1" "0/0" "0/0"
## HiC_scaffold_70_14042778 "1|1" "1/1" NA
## HiC_scaffold_71_410844 "1/1" "0/0" NA
## HiC_scaffold_71_1753451 "0/0" "0/0" NA
## HiC_scaffold_71_2283682 NA "0/0" NA
## HiC_scaffold_71_3439685 "0/0" NA "0/0"
## HiC_scaffold_71_17850462 "0/0" "1/1" NA
## HiC_scaffold_71_20588314 "0/0" NA NA
## HiC_scaffold_71_25465351 NA "1|1" NA
## HiC_scaffold_71_25465352 NA "1|1" NA
## HiC_scaffold_71_26356062 "0/0" "0/0" "0/0"
## HiC_scaffold_72_11785096 NA NA NA
## HiC_scaffold_72_17285854 "0/1" "1/1" "1/1"
## HiC_scaffold_72_23704999 "0/0" "0/0" NA
## HiC_scaffold_72_24465318 NA "1|1" "0/0"
## HiC_scaffold_72_30457277 "0/0" "0/1" "0/1"
## HiC_scaffold_72_32068649 "1/1" "0/0" "0/0"
## HiC_scaffold_72_35058295 "0/0" NA "0/0"
## HiC_scaffold_72_36024997 "1|1" "0/0" "0/0"
## HiC_scaffold_72_37135067 "0/1" NA "1|1"
## HiC_scaffold_72_38410141 "0/0" NA "1/1"
## HiC_scaffold_72_38448056 "1|1" "0/0" "0/0"
## HiC_scaffold_72_41412511 "0/0" "0/1" "0/0"
## HiC_scaffold_73_2192629 "0/0" "1|1" "0/0"
## HiC_scaffold_73_2920208 NA "0/0" "0/0"
## HiC_scaffold_73_4522493 "1/1" "1/1" "1/1"
## HiC_scaffold_73_4748625 "1/1" "1/1" "1/1"
## HiC_scaffold_73_5839336 "1/1" "1/1" NA
## HiC_scaffold_73_9338582 NA "0/0" "0/0"
## HiC_scaffold_73_27393859 "0/1" "0/0" NA
## HiC_scaffold_74_14235619 NA "0/0" "0/0"
## HiC_scaffold_74_14515598 "1/1" "1/1" NA
## HiC_scaffold_74_15116121 "0/0" "0/0" "0/0"
## HiC_scaffold_74_17233613 NA "1/1" NA
## HiC_scaffold_74_17725340 "0/0" NA NA
## HiC_scaffold_74_18418135 "0|1" "0|1" "1|1"
## HiC_scaffold_74_18418138 "0|1" "0|1" "1|1"
## HiC_scaffold_74_21254425 "1/1" "1/1" "1/1"
## HiC_scaffold_74_22261065 "1/1" "0/0" NA
## HiC_scaffold_74_47132519 "1|1" "0/0" NA
## HiC_scaffold_74_50979096 "1/1" "0/0" NA
## HiC_scaffold_74_51060549 "1/1" "0/0" NA
## HiC_scaffold_74_53256803 "0/0" "0/1" NA
## HiC_scaffold_74_55464169 "1/1" "0/1" NA
## HiC_scaffold_74_55515512 "0/1" NA NA
## HiC_scaffold_74_55999260 "0/0" "0/0" "1|1"
## HiC_scaffold_74_57404902 "0/1" "1|1" "0/0"
## HiC_scaffold_74_58181927 "0/0" NA NA
## HiC_scaffold_74_58198600 "1/1" NA NA
## HiC_scaffold_74_63060195 "1/1" "1/1" "1/1"
## HiC_scaffold_75_5345466 "0/0" "1|1" NA
## HiC_scaffold_75_5346522 "0/1" NA "0/0"
## HiC_scaffold_75_5346535 "1/1" "1/1" "0/0"
## HiC_scaffold_75_9850973 "1|1" "0/0" NA
## HiC_scaffold_76_27149820 "0|1" "1/1" NA
## HiC_scaffold_76_31582908 "0/0" "1/1" "0/0"
## HiC_scaffold_76_31792815 "1/1" "0/0" "0/1"
## HiC_scaffold_76_35352820 "1/1" "1|1" NA
## HiC_scaffold_76_57782171 "0/1" "1/1" "0/0"
## HiC_scaffold_76_59862401 NA "1/1" "0/0"
## HiC_scaffold_76_61095594 "0/0" "1|1" "1|1"
## HiC_scaffold_76_65496128 "0/0" NA "0/0"
## HiC_scaffold_76_68965847 NA "1/1" NA
## HiC_scaffold_76_68966411 NA NA "0/0"
## HiC_scaffold_76_69823482 "0|1" "1|1" NA
## HiC_scaffold_76_73343841 "1/1" "1/1" "0/0"
## HiC_scaffold_77_3598274 "0/0" "0/0" NA
## HiC_scaffold_77_6982137 NA "0/0" "0/0"
## HiC_scaffold_77_11021994 NA "1|1" "1/1"
## HiC_scaffold_77_13608165 NA "0/0" "1/1"
## HiC_scaffold_77_16888594 "0/1" "0/1" NA
## HiC_scaffold_77_16888623 "0/1" "0/1" NA
## HiC_scaffold_77_16889448 "0/1" "0/0" "0/0"
## HiC_scaffold_77_39784685 "1|1" "1|1" "1|1"
## HiC_scaffold_77_44375866 "1/1" "1|1" "0/1"
## HiC_scaffold_77_45385370 "0/1" "0/1" "1/1"
## HiC_scaffold_78_5719919 "0/0" "1/1" "1/1"
## HiC_scaffold_78_11353297 "1|1" "0/1" "0|1"
## HiC_scaffold_78_27316392 "0/0" NA "0/0"
## HiC_scaffold_78_48124809 NA "0/0" "0/0"
## HiC_scaffold_78_48124826 "1/1" "0/1" NA
## HiC_scaffold_78_48126176 "0/0" "1/1" NA
## HiC_scaffold_78_48279096 "0/1" "0/1" NA
## HiC_scaffold_78_48434558 "0/0" NA "0|1"
## HiC_scaffold_78_49759181 "1|1" NA NA
## HiC_scaffold_78_49759192 "1|1" "0/0" NA
## HiC_scaffold_78_49759215 "1/1" NA NA
## HiC_scaffold_78_51364025 "1/1" "1/1" "1/1"
## HiC_scaffold_78_55395445 "1/1" "1/1" NA
## HiC_scaffold_78_59610866 "0/0" "0/0" "0/0"
## HiC_scaffold_78_62136661 NA "0/0" NA
## HiC_scaffold_79_1643780 "0/0" "0/1" "0/1"
## HiC_scaffold_79_2519178 "1/1" NA "1/1"
## HiC_scaffold_79_2858100 "1/1" NA "0/0"
## HiC_scaffold_79_3922454 "0/0" "0/0" "0/0"
## HiC_scaffold_79_4127878 "1|1" "1/1" "0/0"
## HiC_scaffold_79_4543693 "1/1" NA "0/0"
## HiC_scaffold_79_11507678 NA "1/1" "0/0"
## HiC_scaffold_79_12618812 "1/1" "0/0" "0/0"
## HiC_scaffold_79_14185404 "1|1" "1|1" "1|1"
## HiC_scaffold_79_17120237 "0/0" NA NA
## HiC_scaffold_79_17120254 "0/0" NA NA
## HiC_scaffold_79_35551507 "0/0" NA "1|1"
## HiC_scaffold_79_35551543 NA "0/0" NA
## HiC_scaffold_79_38927423 "0/0" "0/0" "1|1"
## HiC_scaffold_79_42623307 "0/0" "1|1" "1|1"
## HiC_scaffold_79_43179786 "1|1" "0/0" "0/0"
## HiC_scaffold_79_43180099 "0/1" "0/0" "0/0"
## HiC_scaffold_79_43828078 "0/0" "0/0" NA
## HiC_scaffold_79_43872513 "0/0" "0/1" NA
## HiC_scaffold_79_44627215 "1/1" "1/1" "1/1"
## HiC_scaffold_79_50772769 NA "0/0" "0|1"
## HiC_scaffold_79_55468575 "0/1" NA "0/0"
## HiC_scaffold_79_55816114 "1/1" "0/0" NA
## HiC_scaffold_79_59915784 "1/1" "0/0" "0/1"
## HiC_scaffold_79_60165298 "0/0" "0/0" "1/1"
## HiC_scaffold_79_60165305 "0/0" "0/0" "0/0"
## HiC_scaffold_79_69145556 "0/0" "0/0" "0/0"
## HiC_scaffold_79_70208305 "1|1" "0|1" "0/0"
## HiC_scaffold_79_73412292 "0/0" "0/0" "2/2"
## HiC_scaffold_79_73416663 "0/0" "1|1" "1|1"
## HiC_scaffold_79_73416688 "0/0" NA "0/0"
## HiC_scaffold_79_76863102 "0/0" "0/1" NA
## HiC_scaffold_79_81279649 "0|1" "0/0" NA
## HiC_scaffold_79_81499990 NA NA "1/1"
## HiC_scaffold_79_82319836 "0/0" NA "1|1"
## HiC_scaffold_79_82319849 "0/0" NA "1|1"
## HiC_scaffold_79_83163707 "0/1" "0/0" "0/0"
## HiC_scaffold_79_86283512 "0/1" "1/1" NA
## HiC_scaffold_79_87123758 "1|1" "1|1" "1|1"
## HiC_scaffold_79_88362889 "1/1" "0/0" "1/1"
## HiC_scaffold_79_88599431 "0/0" "1/1" "0/0"
## HiC_scaffold_79_89322919 "0/0" "1/1" "0/0"
## HiC_scaffold_79_89331918 "0/0" "1|1" "1|1"
## HiC_scaffold_79_91340958 "0/1" NA NA
## HiC_scaffold_8_13649836 "1|1" "0|1" "1/1"
## HiC_scaffold_8_13650752 NA "1|1" "1|1"
## HiC_scaffold_8_23818233 NA NA "0/0"
## HiC_scaffold_8_24123972 NA "1|1" "1|1"
## HiC_scaffold_8_24230791 "0/0" "0/0" NA
## HiC_scaffold_8_24588423 "0/0" "0/0" NA
## HiC_scaffold_8_25348483 "0/0" "1/1" NA
## HiC_scaffold_8_25421933 "0/0" "0/0" NA
## HiC_scaffold_8_25772942 "1/1" NA "0/1"
## HiC_scaffold_8_26289589 "0/0" "0/1" "0/0"
## HiC_scaffold_8_27602740 "0/1" "0/1" "0/1"
## HiC_scaffold_8_28159063 "0/0" "1/1" "1/1"
## HiC_scaffold_8_30829320 "0|1" "0/0" "0/0"
## HiC_scaffold_8_31044084 NA "1|1" "1|1"
## HiC_scaffold_8_31415507 "0|2" NA "0/0"
## HiC_scaffold_8_32594682 "0/0" "1|1" NA
## HiC_scaffold_80_3617847 "1/1" "1/1" NA
## HiC_scaffold_80_5758183 "1|1" "0/0" "0/0"
## HiC_scaffold_80_6760006 "1|1" NA NA
## HiC_scaffold_80_6760037 "1/1" "1/1" NA
## HiC_scaffold_80_7772622 "1/1" NA NA
## HiC_scaffold_80_7919533 NA "2|2" "1/1"
## HiC_scaffold_80_8110052 "0/0" "0/0" NA
## HiC_scaffold_80_8193366 "1/1" "1/1" "1/1"
## HiC_scaffold_80_8625784 "1/1" "1/1" "1/1"
## HiC_scaffold_80_8912846 "1/1" "1/1" "0/0"
## HiC_scaffold_80_9544102 "0/1" NA NA
## HiC_scaffold_80_10770701 "0/0" "0/1" "0/0"
## HiC_scaffold_80_11590146 "0/1" NA NA
## HiC_scaffold_80_16953653 "0/0" "0/0" NA
## HiC_scaffold_80_18938832 "0/0" "1|1" "1|1"
## HiC_scaffold_80_19015946 "1/1" "1/1" "1/1"
## HiC_scaffold_80_19404001 "1/1" "1/1" "0/0"
## HiC_scaffold_80_25346708 "0/0" "1|1" NA
## HiC_scaffold_80_37479851 "0/0" "0/0" "0|1"
## HiC_scaffold_80_37507516 "0/0" "0/0" "1/1"
## HiC_scaffold_81_1187192 "0/0" "0/0" NA
## HiC_scaffold_81_2689826 "1|1" "0/0" "1|1"
## HiC_scaffold_81_2690751 "0/0" NA "0/0"
## HiC_scaffold_81_6614123 "1/1" "0/0" "0/0"
## HiC_scaffold_81_7836855 "1/1" NA "1/1"
## HiC_scaffold_81_10334868 "1/1" NA "0/0"
## HiC_scaffold_81_10458752 "0/0" "1/1" "1/1"
## HiC_scaffold_81_17515538 "1/1" "1/1" "1|1"
## HiC_scaffold_81_40271282 "0/0" "0/0" NA
## HiC_scaffold_81_40271294 "0|1" "1/1" NA
## HiC_scaffold_81_41096427 "0/0" "1/1" "0|1"
## HiC_scaffold_81_41096444 "0/0" "1/1" "0|1"
## HiC_scaffold_81_43820595 "0/0" "1/1" "0/0"
## HiC_scaffold_81_43820732 NA "1|1" "0/0"
## HiC_scaffold_81_43854278 "0/1" "0/1" NA
## HiC_scaffold_81_44804862 "0/0" "0/0" NA
## HiC_scaffold_81_45063428 "0/0" "0/0" "0/0"
## HiC_scaffold_81_45950590 "0/0" "0/1" "0/0"
## HiC_scaffold_81_46714752 "1|1" "1|1" "1|1"
## HiC_scaffold_81_46714759 "1|1" "0/0" "0/0"
## HiC_scaffold_81_47170397 "1|1" "1|1" NA
## HiC_scaffold_81_47628201 "1|1" NA "0/0"
## HiC_scaffold_81_48105216 "1|1" "0/0" "0/0"
## HiC_scaffold_81_48932070 "0/1" "0/0" NA
## HiC_scaffold_81_54050146 "1/1" "1/1" "1/1"
## HiC_scaffold_82_5672063 "0/0" "0/0" "0|1"
## HiC_scaffold_82_8796823 "0|1" "0/1" "0/1"
## HiC_scaffold_82_13450959 "0/1" NA "1/1"
## HiC_scaffold_82_26144442 NA "0/0" NA
## HiC_scaffold_82_26147011 "0/0" NA NA
## HiC_scaffold_82_28907834 "0/0" "0/1" "0/1"
## HiC_scaffold_82_34413793 "1|1" "1|1" "0/0"
## HiC_scaffold_82_34413800 NA "1|1" "0/0"
## HiC_scaffold_82_36173035 NA "1|1" NA
## HiC_scaffold_82_40539273 "0/1" "1/1" "0/0"
## HiC_scaffold_82_41470256 "1/1" "1/1" NA
## HiC_scaffold_83_23993605 "0/1" NA "0/0"
## HiC_scaffold_83_35035961 NA "1/1" NA
## HiC_scaffold_83_43423618 "1|1" NA "1|1"
## HiC_scaffold_83_46920654 "0/0" "0/1" "1/1"
## HiC_scaffold_83_46934197 "1|1" "1/1" "1/1"
## HiC_scaffold_84_356301 "0/0" "0/0" "0/0"
## HiC_scaffold_84_5761817 "0/0" "0/1" "0/0"
## HiC_scaffold_84_5769022 NA NA "1|1"
## HiC_scaffold_84_6288130 "0|0" "1|1" "0/0"
## HiC_scaffold_84_6288141 "1/1" "1|1" "1/1"
## HiC_scaffold_84_6288147 "1/1" "0/0" "0/0"
## HiC_scaffold_84_7069238 "0/0" "0/0" "0|1"
## HiC_scaffold_84_9131309 NA "0/0" "1/1"
## HiC_scaffold_84_10148442 "0/0" NA "0/0"
## HiC_scaffold_84_14659391 "1/1" "1/1" "1/1"
## HiC_scaffold_84_16302752 NA NA "1/1"
## HiC_scaffold_84_18463244 NA NA "1/1"
## HiC_scaffold_84_22909575 NA "0/0" "1|1"
## HiC_scaffold_84_29275266 "0/0" "0/0" "1/1"
## HiC_scaffold_84_31184610 "0/1" NA "1/1"
## HiC_scaffold_84_33093169 NA "0|1" "0/0"
## HiC_scaffold_84_37675180 "0/1" "0/0" "1/1"
## HiC_scaffold_84_39501814 "0/0" "0|1" "0/0"
## HiC_scaffold_84_50169438 "1|1" "0|1" "0|1"
## HiC_scaffold_84_50169445 "1|1" "0|1" "0|1"
## HiC_scaffold_84_51231025 "0/0" "1/1" NA
## HiC_scaffold_85_9792207 NA NA NA
## HiC_scaffold_85_11784233 "0/0" NA "1/1"
## HiC_scaffold_85_11911022 "1|1" "1|1" NA
## HiC_scaffold_85_11911142 "0/0" "0/0" "0/0"
## HiC_scaffold_85_11913828 "0/0" "1/1" NA
## HiC_scaffold_85_11913831 "1/1" "0/0" NA
## HiC_scaffold_85_12353081 "1/1" "1/1" "1/1"
## HiC_scaffold_85_12414551 "0/0" NA "0/1"
## HiC_scaffold_85_13043967 "0|1" NA NA
## HiC_scaffold_85_13221888 NA "1/1" "0/0"
## HiC_scaffold_85_27008863 "0/1" "0/0" "0/0"
## HiC_scaffold_85_28992264 "0|1" "0|1" "0/1"
## HiC_scaffold_85_28992268 "0|1" "0|1" "0/1"
## HiC_scaffold_85_64310850 "1|1" "1|1" NA
## HiC_scaffold_85_65135112 NA "0|2" "0/2"
## HiC_scaffold_85_65563529 NA NA NA
## HiC_scaffold_86_1949664 "1|1" NA "0/0"
## HiC_scaffold_86_5340423 "0/0" "0/0" "0/0"
## HiC_scaffold_86_5483991 "1|1" "1|1" "0/0"
## HiC_scaffold_86_8928469 "0/0" "0/0" NA
## HiC_scaffold_86_23727924 "0/0" "0/0" "0/0"
## HiC_scaffold_86_24825818 "1|1" "1|1" NA
## HiC_scaffold_86_25333718 "1/1" "1/1" "1/1"
## HiC_scaffold_86_29668168 "0/0" "0/0" "0/0"
## HiC_scaffold_86_30914243 "1|1" "0/0" "1|1"
## HiC_scaffold_86_32040320 "1|1" "1|1" "0|1"
## HiC_scaffold_86_32040329 "1|1" "1|1" "0|1"
## HiC_scaffold_86_32125061 "1/1" NA "0/0"
## HiC_scaffold_86_32144758 NA "1/1" "1/1"
## HiC_scaffold_86_32153692 "1/1" "1/1" NA
## HiC_scaffold_86_32534129 "1/1" NA "0/0"
## HiC_scaffold_86_32605768 "0/0" NA "0/0"
## HiC_scaffold_86_36355399 "0/1" "0/0" "0/0"
## HiC_scaffold_86_36357265 "1/1" "0/0" "0/0"
## HiC_scaffold_87_1253643 NA "0/0" "0/1"
## HiC_scaffold_87_2137958 "0/1" "0/0" "0/0"
## HiC_scaffold_87_3980100 NA "1/1" "0/0"
## HiC_scaffold_87_4395923 "0/0" "0/0" "0/0"
## HiC_scaffold_87_5489328 "1|1" "1|1" "1|1"
## HiC_scaffold_87_6300441 "1/1" "0/0" NA
## HiC_scaffold_87_16306904 "0/0" "1/1" NA
## HiC_scaffold_87_44780945 "0/0" "0|1" "0/0"
## HiC_scaffold_88_5584327 "0/0" "0/1" "1/1"
## HiC_scaffold_88_7104630 "1|1" NA "0|1"
## HiC_scaffold_88_7104631 "1|1" NA "0/0"
## HiC_scaffold_88_7104638 "0/0" NA "0|1"
## HiC_scaffold_88_7104639 "0/0" NA "0/0"
## HiC_scaffold_88_7104640 "0/0" NA "0|1"
## HiC_scaffold_88_7479340 "0/0" "0|1" "1|1"
## HiC_scaffold_88_8773607 NA "0/0" "0/0"
## HiC_scaffold_88_9883678 "1|1" "1|1" "0/1"
## HiC_scaffold_88_10878718 "0/0" NA "1/1"
## HiC_scaffold_88_19365116 "1/1" "0/0" NA
## HiC_scaffold_88_20477349 "0/0" "0/0" "1/1"
## HiC_scaffold_88_20557885 "0/0" "0/1" "0/0"
## HiC_scaffold_89_675045 "0/0" NA "0/0"
## HiC_scaffold_89_2815845 "0/0" "0/0" "0/0"
## HiC_scaffold_89_2843940 "1|1" "0/0" "0/0"
## HiC_scaffold_89_3018830 "1/1" NA "1/1"
## HiC_scaffold_89_13745506 "0/1" "0/0" "1/1"
## HiC_scaffold_89_30006907 NA "0/1" "1/1"
## HiC_scaffold_89_36509388 "1|1" "1|1" "0/1"
## HiC_scaffold_89_38703735 "0/0" "1/1" "0/1"
## HiC_scaffold_89_38764895 "1/1" "1/1" "1/1"
## HiC_scaffold_89_42052609 NA NA "1/1"
## HiC_scaffold_89_42054991 "0/0" "0/1" "1/1"
## HiC_scaffold_89_44306958 NA NA "1|1"
## HiC_scaffold_89_44338206 "0/0" "0/0" "0/0"
## HiC_scaffold_89_45298973 "1/1" "1/1" "1/1"
## HiC_scaffold_9_3529921 "1/1" NA NA
## HiC_scaffold_9_5660454 "0/0" "0/0" "0/1"
## HiC_scaffold_9_5660461 "1|1" "0|1" "1/1"
## HiC_scaffold_9_5854070 "1/1" "1/1" "1/1"
## HiC_scaffold_9_6142415 "0/0" NA "1|1"
## HiC_scaffold_9_6142436 "0/0" NA "1|1"
## HiC_scaffold_9_6143781 "0/1" NA "1/1"
## HiC_scaffold_9_6654825 "0/1" "1/1" "0/0"
## HiC_scaffold_9_7094545 "0/1" "0/1" "1|1"
## HiC_scaffold_9_7100208 "0/0" "0/0" "1|1"
## HiC_scaffold_9_7109988 NA "0/1" "1/1"
## HiC_scaffold_9_7111922 NA "1|1" "1|1"
## HiC_scaffold_9_8235781 "1/1" "0/1" "1/1"
## HiC_scaffold_9_8279558 NA "0/1" "1/1"
## HiC_scaffold_9_15679481 "0/0" "0/0" "0/0"
## HiC_scaffold_9_18082611 NA "0/0" "0/0"
## HiC_scaffold_9_18090830 "0/0" "0/0" "0/0"
## HiC_scaffold_9_30240531 "1/1" "0/1" "1/1"
## HiC_scaffold_90_10418696 "1/1" "0/0" "0/0"
## HiC_scaffold_90_11470224 NA "1/1" NA
## HiC_scaffold_90_13593319 "1/1" "0/0" "0/0"
## HiC_scaffold_90_16260161 NA "1/1" NA
## HiC_scaffold_90_22325499 "0/0" "0/0" "0/0"
## HiC_scaffold_90_23574204 "0/0" NA "0/0"
## HiC_scaffold_90_23609908 "1|1" "1|1" NA
## HiC_scaffold_90_23623078 "1|1" "1|1" NA
## HiC_scaffold_90_23626883 "0/0" "1/1" "0/0"
## HiC_scaffold_90_23812663 "1/1" "1/1" "0/1"
## HiC_scaffold_90_25939283 "0/0" "0/0" "0/1"
## HiC_scaffold_90_25985714 NA "1/1" "0/0"
## HiC_scaffold_90_30751272 "1/1" NA "0/0"
## HiC_scaffold_90_31232025 "1|1" "1|1" "1|1"
## HiC_scaffold_90_31245699 NA "1/1" "0/0"
## HiC_scaffold_90_31527975 NA "0/0" "1/1"
## HiC_scaffold_90_31546172 "0/0" NA "0/1"
## HiC_scaffold_90_38511996 "0/1" "1|1" "0/0"
## HiC_scaffold_90_38511999 "0|1" "1|1" "0/0"
## HiC_scaffold_90_38517279 "1/1" "0/0" NA
## HiC_scaffold_90_40624104 "0/0" "0/1" "1/1"
## HiC_scaffold_91_5644765 "0|1" "1|1" NA
## HiC_scaffold_91_5867214 NA "0|1" "1|1"
## HiC_scaffold_91_5867226 NA "0|1" "1|1"
## HiC_scaffold_91_7704263 "0/0" "0/0" "0|1"
## HiC_scaffold_91_7871360 "1/1" "1/1" "1/1"
## HiC_scaffold_91_8538014 "1/1" "1/1" "1/1"
## HiC_scaffold_91_13230485 "1|1" "0/0" NA
## HiC_scaffold_91_28696118 "0/0" "1/1" NA
## HiC_scaffold_91_28696625 NA "1|1" NA
## HiC_scaffold_91_42177482 "1|1" "0/0" NA
## HiC_scaffold_91_46813640 "2|2" "0/0" "2|2"
## HiC_scaffold_92_23783035 "0/0" "0/0" NA
## HiC_scaffold_92_23783036 "0/0" "0/0" NA
## HiC_scaffold_92_24712793 "0/1" "1/1" NA
## HiC_scaffold_92_28698258 NA "1|1" NA
## HiC_scaffold_92_40691582 "0/0" "0/0" "0/0"
## HiC_scaffold_92_43967712 "0/0" NA "0/1"
## HiC_scaffold_92_47147572 "0|1" "0/0" "0/0"
## HiC_scaffold_92_49042714 "0/0" "0|1" "1|1"
## HiC_scaffold_92_49042715 "0/0" "0|1" "1|1"
## HiC_scaffold_92_53634002 "0/0" NA NA
## HiC_scaffold_92_58211868 "1|1" "0/1" "1|1"
## HiC_scaffold_92_60114155 "0/0" "0/0" "0/0"
## HiC_scaffold_92_63603483 "0/0" "0/0" NA
## HiC_scaffold_92_64797225 NA "0/0" "0/0"
## HiC_scaffold_92_68367476 NA "0/0" "0/0"
## HiC_scaffold_93_1912167 "0/0" "0/1" NA
## HiC_scaffold_93_2485978 "1/1" "1/1" "1/1"
## HiC_scaffold_93_3227638 "0/0" "0/0" "1/1"
## HiC_scaffold_93_3227641 NA "0/0" "0/0"
## HiC_scaffold_93_13971208 NA "0/1" NA
## HiC_scaffold_93_13987080 "0/0" "1/1" "0/0"
## HiC_scaffold_93_21125468 "0/1" "1/1" "1/1"
## HiC_scaffold_93_21845293 "0/0" "0/0" "1/1"
## HiC_scaffold_93_21845310 "0/0" "0/0" "0/0"
## HiC_scaffold_93_21846342 "0/0" "0/0" "1|1"
## HiC_scaffold_93_21846356 "0/0" "0/0" "1|1"
## HiC_scaffold_93_22589723 "0/0" "0/0" "0/0"
## HiC_scaffold_93_22619278 "1/1" NA NA
## HiC_scaffold_93_22631258 "1|1" "0|1" "1|1"
## HiC_scaffold_93_22631266 "1|1" "0|1" "1|1"
## HiC_scaffold_94_3110102 "0/0" "0/0" "1/1"
## HiC_scaffold_94_3205919 "0/0" NA "0/0"
## HiC_scaffold_94_9023846 NA "0/0" "0/0"
## HiC_scaffold_94_11572820 "1/1" "0/1" "0/0"
## HiC_scaffold_94_12368532 "0/0" "1/1" "0/0"
## HiC_scaffold_94_42179418 "0/0" "0/0" NA
## HiC_scaffold_94_42179519 NA "1/1" NA
## HiC_scaffold_94_51646206 "0/0" "2/2" NA
## HiC_scaffold_94_52781289 "1/1" NA "1/1"
## HiC_scaffold_94_53790035 "1/1" "0/0" "0/0"
## HiC_scaffold_94_53792738 NA "0/0" "0/0"
## HiC_scaffold_94_56768905 "1|1" "0/0" "1|1"
## HiC_scaffold_946_81276 NA "0/1" "1/1"
## HiC_scaffold_95_3189690 "1/1" "1/1" NA
## HiC_scaffold_95_4397298 "1|1" "1|1" "1|1"
## HiC_scaffold_95_9469157 "1|1" NA NA
## HiC_scaffold_95_10641411 NA "1/1" "0/0"
## HiC_scaffold_95_10949821 "1/1" "1/1" "0/0"
## HiC_scaffold_95_12993394 "1|1" "0/0" "1/1"
## HiC_scaffold_95_15515793 "0|1" "1|1" NA
## HiC_scaffold_95_15608785 "1|1" "1|1" "0/0"
## HiC_scaffold_95_15609137 "1/1" "1/1" "0/0"
## HiC_scaffold_95_16295316 NA NA "0/1"
## HiC_scaffold_95_22656165 "0/0" "0/0" NA
## HiC_scaffold_95_25885727 NA "1/1" "1/1"
## HiC_scaffold_96_10460019 "0/0" NA "1/1"
## HiC_scaffold_96_27155785 "1/1" "1/1" "1/1"
## HiC_scaffold_96_37939434 "0/0" "0/0" "0/0"
## HiC_scaffold_96_51115048 "0/0" "1/1" "1|1"
## HiC_scaffold_96_51116511 "1/1" "0/1" NA
## HiC_scaffold_96_51915040 "0/0" "0/0" "1|1"
## HiC_scaffold_96_52681287 "1/1" "0/1" "0/0"
## HiC_scaffold_96_53276519 "0/0" "0/1" "0/0"
## HiC_scaffold_97_1736926 NA NA NA
## HiC_scaffold_97_1736994 "0/1" "1|1" "0/0"
## HiC_scaffold_97_3863543 "1/1" "1/1" NA
## HiC_scaffold_97_4200445 NA "0/0" "0/0"
## HiC_scaffold_97_4799162 "1/1" "1/1" NA
## HiC_scaffold_97_5027892 NA "0/0" "0/1"
## HiC_scaffold_97_8007933 "0|1" "0/0" NA
## HiC_scaffold_97_17997210 NA "0/0" "0/0"
## HiC_scaffold_97_18604647 NA "1/1" NA
## HiC_scaffold_97_20239636 "0/0" "0|1" "0/0"
## HiC_scaffold_98_15154096 "0/0" "0/0" "1|1"
## HiC_scaffold_98_22342667 "1|1" "0/0" "1/1"
## HiC_scaffold_98_22634293 "1|1" NA NA
## HiC_scaffold_98_22634294 "1|1" NA NA
## HiC_scaffold_98_22721138 "1/1" "1/1" "1/1"
## HiC_scaffold_98_22869378 "0/1" NA NA
## HiC_scaffold_98_24108405 "0/0" NA NA
## HiC_scaffold_98_27359592 "0|1" "0/0" "1/1"
## HiC_scaffold_98_28549834 "1/1" "0/0" NA
## HiC_scaffold_98_28867520 "1/1" "1|1" "0/0"
## HiC_scaffold_98_28867524 "1/2" "1|1" "0/0"
## HiC_scaffold_98_29431717 "0/1" "0/0" "0/1"
## HiC_scaffold_98_29675109 "1/1" NA "0/0"
## HiC_scaffold_99_1163244 "1|1" "1/1" "0/0"
## HiC_scaffold_99_1451611 "0/0" "0/0" NA
## HiC_scaffold_99_2021961 "0/0" "0/0" "0/0"
## HiC_scaffold_99_5134392 "1/1" NA "1/1"
## HiC_scaffold_99_5239109 "1/1" "1/1" "0/0"
## HiC_scaffold_99_6917738 "1|1" "1|1" "1|1"
## HiC_scaffold_99_11221970 "0/0" "0/0" "0/0"
## HiC_scaffold_99_25982503 "0/1" "1/1" "1/1"
## Tank_9_Crab_1 Tank_9_Crab_2 Tank_9_Crab_3
## HiC_scaffold_1_2523394 "1/1" "0/0" "1/1"
## HiC_scaffold_1_2542157 "0/0" "0/1" "0/0"
## HiC_scaffold_1_2647806 "1/1" "0/0" "1/1"
## HiC_scaffold_1_2970226 "0/0" "1|1" "0/0"
## HiC_scaffold_1_3329447 "0/0" "0/0" "0/0"
## HiC_scaffold_1_3795100 "1|1" "1|1" NA
## HiC_scaffold_10_2221345 "0/0" NA "0/0"
## HiC_scaffold_10_2299490 "0/0" NA "1|1"
## HiC_scaffold_10_2565301 "0/1" "0/1" "0/0"
## HiC_scaffold_10_3864355 "1/1" "0/0" "1/1"
## HiC_scaffold_10_4319900 "1|1" NA NA
## HiC_scaffold_10_4319907 "1|1" NA NA
## HiC_scaffold_10_5404579 NA "0/0" NA
## HiC_scaffold_10_5843373 "0/0" "0/0" "0/1"
## HiC_scaffold_100_854947 "0/0" "1|1" "0/0"
## HiC_scaffold_100_1070817 "0/0" NA "0/0"
## HiC_scaffold_100_2002094 "0/0" "0/0" "0|1"
## HiC_scaffold_100_2002097 "0/0" "0/0" "0|1"
## HiC_scaffold_100_2010331 "0/0" "1|1" "0/0"
## HiC_scaffold_100_5186498 "1/1" "1/1" "1/1"
## HiC_scaffold_100_5828477 NA "1/1" "0/1"
## HiC_scaffold_100_6470419 "0/1" "1|1" "0|1"
## HiC_scaffold_100_6739225 "0/1" NA "1/1"
## HiC_scaffold_100_6739258 "0/0" "1|1" "1|1"
## HiC_scaffold_100_6739264 "0/0" "1|1" "1|1"
## HiC_scaffold_100_6907177 "0/0" "1/1" "0/0"
## HiC_scaffold_100_8384481 "1/1" "0|1" "0/0"
## HiC_scaffold_100_8384495 "0/0" "1|1" "0/0"
## HiC_scaffold_100_9451470 "0/0" "0/0" "0/0"
## HiC_scaffold_100_10464574 "0/0" "0/0" "0/0"
## HiC_scaffold_100_11934792 "1|1" "0/0" "0/0"
## HiC_scaffold_100_11980177 "0/1" NA "1|1"
## HiC_scaffold_100_18465760 "1|1" NA NA
## HiC_scaffold_100_18465762 "1|1" NA NA
## HiC_scaffold_100_18466205 "2/2" "3|3" "2|2"
## HiC_scaffold_100_31738115 "0/0" "1/1" "0/1"
## HiC_scaffold_100_44227362 "0/0" NA "1/1"
## HiC_scaffold_101_12808961 "0/0" "0|1" "1|1"
## HiC_scaffold_101_13897149 NA "1/1" "1/1"
## HiC_scaffold_101_18337279 "0/0" NA "1/1"
## HiC_scaffold_101_20800167 "1/1" "1/1" "1/1"
## HiC_scaffold_102_2260041 "0/0" "1/1" "0/1"
## HiC_scaffold_102_8734519 NA "0/0" "0/1"
## HiC_scaffold_102_10233999 NA "1|1" "1|1"
## HiC_scaffold_102_11446042 "0/1" NA "0/0"
## HiC_scaffold_102_15918694 "1/1" "0/0" "0/0"
## HiC_scaffold_102_15935667 "0/0" "0/0" NA
## HiC_scaffold_102_17442643 "0/0" NA "1/1"
## HiC_scaffold_102_17608969 "0/0" "0/0" NA
## HiC_scaffold_102_20180185 "0/1" "0/0" "1/1"
## HiC_scaffold_102_24788723 NA "0/0" "0|1"
## HiC_scaffold_102_25423729 "1|1" "1|1" "1|1"
## HiC_scaffold_102_39755142 "0/0" "1/1" "1/1"
## HiC_scaffold_102_52046978 "1/1" "1/1" "0/1"
## HiC_scaffold_1027_34152 NA NA "0/0"
## HiC_scaffold_103_601715 "1/1" "1/1" "1/1"
## HiC_scaffold_103_2891384 "0/0" "0/0" "0/0"
## HiC_scaffold_103_8191270 "0/0" "1|1" "0/0"
## HiC_scaffold_103_9521272 "1/1" "0/0" "1/1"
## HiC_scaffold_103_14768909 "0/0" "0/0" "0/0"
## HiC_scaffold_103_19312119 "1|1" "1|1" "1|1"
## HiC_scaffold_103_21284866 "0/1" "1/1" "1/1"
## HiC_scaffold_103_31428453 "0/0" "0|1" "0/0"
## HiC_scaffold_103_42567396 "0/0" "0/1" "0/0"
## HiC_scaffold_103_45921571 "0|1" "0/0" "0|1"
## HiC_scaffold_103_45921573 "0|1" "0/0" "0|1"
## HiC_scaffold_103_49592022 "0/0" NA "1/1"
## HiC_scaffold_103_49620132 "0/0" "0/0" "0/0"
## HiC_scaffold_103_50440915 "0/0" "0/0" "1|1"
## HiC_scaffold_103_51944137 NA NA "1/1"
## HiC_scaffold_103_54308582 "0/0" NA "0/0"
## HiC_scaffold_103_54424067 "0/0" "0/0" "0/0"
## HiC_scaffold_103_56932900 "0/1" "1/1" "1/1"
## HiC_scaffold_103_57470264 "0|1" "0|1" "0/0"
## HiC_scaffold_104_7771140 "1/1" "1/1" "1/1"
## HiC_scaffold_104_9103028 "1/1" "0/1" "1/1"
## HiC_scaffold_104_10633168 "1/1" "0/0" "0/0"
## HiC_scaffold_104_18917031 "0/1" "1/1" "0/0"
## HiC_scaffold_104_20851902 "0/0" "0/1" "0/0"
## HiC_scaffold_104_24451803 "0/0" "0/0" "0/1"
## HiC_scaffold_104_28597688 "0/0" "0|1" "0/0"
## HiC_scaffold_104_40927999 NA NA "0/0"
## HiC_scaffold_104_46490074 "0|1" "0/0" "1/1"
## HiC_scaffold_104_49759053 "0/0" "0/0" "0/0"
## HiC_scaffold_104_57267896 NA "0/1" "1/1"
## HiC_scaffold_104_62570010 "1/1" "0/0" "1/1"
## HiC_scaffold_11_32804173 "0/1" NA "1/1"
## HiC_scaffold_11_34516508 "1/1" "1|1" "1/1"
## HiC_scaffold_11_35332996 "0/0" "1/1" NA
## HiC_scaffold_11_35904027 "1/1" "1|1" "1/1"
## HiC_scaffold_11_41539793 "0/1" "0/0" NA
## HiC_scaffold_11_41604080 "1/1" "1|1" "1|1"
## HiC_scaffold_11_42855323 "0/0" "0/0" "0/1"
## HiC_scaffold_11_45339409 "1/1" NA "0/0"
## HiC_scaffold_11_45339410 "0/0" NA "1/1"
## HiC_scaffold_11_47544035 "1/1" NA "1/1"
## HiC_scaffold_12_7515164 "0/1" "0/1" "0/1"
## HiC_scaffold_12_12640100 "0/0" "0/0" "0/0"
## HiC_scaffold_12_12826705 "0/1" "0/0" "0/0"
## HiC_scaffold_12_14899285 "1/1" "0/0" "1/1"
## HiC_scaffold_12_17465672 "0/0" "0/1" "0/0"
## HiC_scaffold_12_22770710 "0/0" "0/0" NA
## HiC_scaffold_12_32318964 "1|1" "1|1" "1|1"
## HiC_scaffold_12_35136373 "0|1" "1|1" NA
## HiC_scaffold_12_40687860 "0/0" "0/0" "0/0"
## HiC_scaffold_13_2938168 "1/1" "1/1" "1/1"
## HiC_scaffold_13_20350974 "0/0" "1/1" NA
## HiC_scaffold_13_27759554 "1/1" "0/0" "0/1"
## HiC_scaffold_13_28146828 "0/0" "0/0" NA
## HiC_scaffold_13_28146830 "0/0" "0/0" NA
## HiC_scaffold_13_28925343 "2/2" "1/1" "1/1"
## HiC_scaffold_13_31913129 "0/0" "1/1" "1/1"
## HiC_scaffold_13_32078924 "0/0" "1|1" "0/0"
## HiC_scaffold_13_33864805 "1/1" "1/1" "1|1"
## HiC_scaffold_13_34892542 "0/0" "1|1" "1/1"
## HiC_scaffold_13_34893103 "0|1" "0/0" "0/0"
## HiC_scaffold_13_35762551 "0|1" "1|1" "1|1"
## HiC_scaffold_13_35881745 "1/1" "1/1" "1|1"
## HiC_scaffold_13_35881749 "0/1" "0/1" "1|1"
## HiC_scaffold_14_3843214 "1/1" "1/1" "1/1"
## HiC_scaffold_14_25884262 NA "0/0" "2|2"
## HiC_scaffold_14_27050415 "1/1" "1/1" "1/1"
## HiC_scaffold_14_27118495 NA "1/1" "0/0"
## HiC_scaffold_14_27277222 "0|2" "0|2" "0/0"
## HiC_scaffold_14_29215814 "0/1" "1|1" "1|1"
## HiC_scaffold_15_2460398 NA NA "1|1"
## HiC_scaffold_15_2462980 "0/1" NA "0/0"
## HiC_scaffold_15_2467289 NA "1/1" "0/1"
## HiC_scaffold_15_5669141 "0/0" "0/0" "1/1"
## HiC_scaffold_15_13700694 "0/0" "0/0" NA
## HiC_scaffold_15_17825275 "0|1" NA "1|1"
## HiC_scaffold_15_19938475 "0/0" "0/0" "1/1"
## HiC_scaffold_15_23865956 NA "1|1" "1|1"
## HiC_scaffold_15_28837774 "0/0" "1/1" "0/1"
## HiC_scaffold_15_28837810 "0/1" "0/1" "0/1"
## HiC_scaffold_15_28837823 "0|1" "0/0" "0/1"
## HiC_scaffold_15_28837835 "0/0" "0/0" "0/0"
## HiC_scaffold_15_28837841 "0/0" "0/0" "0/1"
## HiC_scaffold_15_28837854 "1/1" "1/1" "1/1"
## HiC_scaffold_15_34827832 "0/0" NA "0/0"
## HiC_scaffold_15_34893807 "0/0" "0/0" "0/0"
## HiC_scaffold_15_35327348 "0/0" "0/0" "1/1"
## HiC_scaffold_15_42161112 "0/0" "1|1" "0/0"
## HiC_scaffold_15_42164926 "0|1" NA "0/0"
## HiC_scaffold_15_42164946 "0/1" NA "0/0"
## HiC_scaffold_15_46289572 "0/0" "0/0" "0/1"
## HiC_scaffold_15_50591576 "1|1" "0|1" "0/0"
## HiC_scaffold_15_50759128 "0/1" NA "0/0"
## HiC_scaffold_15_51188336 "1|1" "0/0" "1|1"
## HiC_scaffold_15_54726640 "1/1" "1/1" "1/1"
## HiC_scaffold_15_54788235 "0/0" "1/1" "1/1"
## HiC_scaffold_15_56162375 "0|1" "1|1" "1|1"
## HiC_scaffold_15_61091106 NA "1/1" "0/0"
## HiC_scaffold_15_61464359 NA "1/1" "1/1"
## HiC_scaffold_15_61510386 "1/1" NA NA
## HiC_scaffold_15_62309788 "0/0" "0/0" "0/0"
## HiC_scaffold_15_62309793 "0/0" "0/0" "0/0"
## HiC_scaffold_15_62771254 "0/0" "1/1" NA
## HiC_scaffold_15_63493927 "1/1" "1/1" "1/1"
## HiC_scaffold_15_64997502 "1/1" NA "1/1"
## HiC_scaffold_15_65007865 "1/1" NA NA
## HiC_scaffold_15_65007879 "0/0" "0/0" NA
## HiC_scaffold_15_66038529 "0/0" NA "0/0"
## HiC_scaffold_15_69811281 "1/1" "1/1" "1/1"
## HiC_scaffold_16_14205925 "0/1" "1/1" NA
## HiC_scaffold_16_30404047 "0/1" "0|1" "0/1"
## HiC_scaffold_16_57413288 "1|1" "0/0" "0/0"
## HiC_scaffold_16_63687578 "0/0" "1|1" "0/0"
## HiC_scaffold_16_74138787 "1/1" "0/1" "1/1"
## HiC_scaffold_16_74140106 "1/1" "0/0" "1/1"
## HiC_scaffold_16_76276015 "0/0" "0/0" "1/1"
## HiC_scaffold_17_11390873 "0/1" "1|1" "0|1"
## HiC_scaffold_17_12551128 "1/1" "1/1" "1/1"
## HiC_scaffold_17_16615612 "0/0" "0/0" "0/1"
## HiC_scaffold_17_18838093 "1|1" "0/1" "0/0"
## HiC_scaffold_17_22801072 "0/0" "0/1" "0/0"
## HiC_scaffold_17_23788599 "1/1" "1/1" "1/1"
## HiC_scaffold_17_29383895 "1/1" "0/0" "0/0"
## HiC_scaffold_17_29618771 "0/1" NA "0/1"
## HiC_scaffold_17_29976139 "0/0" NA "0/0"
## HiC_scaffold_17_31107213 "1/1" NA "1/1"
## HiC_scaffold_17_32493792 "1/1" "1/1" "0/0"
## HiC_scaffold_17_33732050 NA "1/1" "0/1"
## HiC_scaffold_17_33801314 "1|1" "0/0" "0/0"
## HiC_scaffold_17_34081889 "0/1" "1/1" "0/1"
## HiC_scaffold_18_227565 "1/1" "0/0" "0/0"
## HiC_scaffold_18_1213486 "0/0" "1/1" NA
## HiC_scaffold_18_1701312 "0/0" "0/0" "0/0"
## HiC_scaffold_18_3506437 "0/1" "1/1" "0/0"
## HiC_scaffold_18_6304978 "1/1" "1/1" NA
## HiC_scaffold_18_6351493 "1/1" "1/1" "1/1"
## HiC_scaffold_18_6358009 NA "1/1" "1/1"
## HiC_scaffold_18_10770701 "0/1" "0/0" "0/1"
## HiC_scaffold_18_13342858 "1/1" NA NA
## HiC_scaffold_18_20045832 "0/0" NA "0/0"
## HiC_scaffold_18_22682683 NA NA "0/0"
## HiC_scaffold_18_26337790 "1|1" "1|1" NA
## HiC_scaffold_18_48929148 "0/0" "1|1" "0/0"
## HiC_scaffold_18_51490626 "0/1" "1/1" "0/0"
## HiC_scaffold_18_53723137 "1|1" "0/1" "0/0"
## HiC_scaffold_18_54496637 "0/1" "0|0" "0/0"
## HiC_scaffold_18_55294388 "0/0" "0/0" "0/0"
## HiC_scaffold_19_279726 "1/1" "1/1" "1/1"
## HiC_scaffold_19_6426572 "1/1" NA "1/1"
## HiC_scaffold_19_6575887 "1|1" "0/0" "1|1"
## HiC_scaffold_19_7755254 "0/1" "0/0" "0/0"
## HiC_scaffold_19_9301421 "0/0" "0/0" "0/0"
## HiC_scaffold_19_9357388 "1|1" "0/0" "1|1"
## HiC_scaffold_19_9778841 NA "0/0" "0/0"
## HiC_scaffold_19_10928976 "0|1" "1|1" "0/0"
## HiC_scaffold_19_10928980 "0|1" "1|1" "0/0"
## HiC_scaffold_19_10928982 "0|1" "0/0" "1|1"
## HiC_scaffold_19_11106347 "0/0" "1|1" "0/0"
## HiC_scaffold_19_11590139 "1/1" "1/1" "1/1"
## HiC_scaffold_19_11665300 "1/1" "1/1" "1/1"
## HiC_scaffold_19_14793640 "0/0" "0/0" "0/0"
## HiC_scaffold_19_22112743 "1|1" NA "1|1"
## HiC_scaffold_19_25473671 "1/1" "1/1" "1/1"
## HiC_scaffold_19_25473692 "0/1" "1/1" "1/1"
## HiC_scaffold_19_28110829 "0/0" "1|1" "0/0"
## HiC_scaffold_19_28465002 "0/0" NA "0/1"
## HiC_scaffold_19_28465167 "0/1" "0/1" "0/0"
## HiC_scaffold_19_30106869 "1|1" "1|1" "0/1"
## HiC_scaffold_19_52538858 "1/1" NA "1/1"
## HiC_scaffold_19_52596196 "0/0" NA "1/1"
## HiC_scaffold_19_53482993 "0/0" "1|1" "1/1"
## HiC_scaffold_19_54312637 "1/1" "0/0" "1/1"
## HiC_scaffold_19_59345841 "0/0" "0|1" NA
## HiC_scaffold_2_3296144 "1|1" "1|1" "1|1"
## HiC_scaffold_2_3418589 "1/1" "1/1" "1/1"
## HiC_scaffold_2_3864060 "1/1" "1/1" "1/1"
## HiC_scaffold_2_4104755 "0|1" "1|1" "0/0"
## HiC_scaffold_2_4104758 "0|1" "1|1" "0/0"
## HiC_scaffold_2_8316721 "0|0" "0|1" "0/0"
## HiC_scaffold_2_9098999 "0/1" "0/0" "0/0"
## HiC_scaffold_2_10457537 "1/1" "0/0" "0/0"
## HiC_scaffold_2_19048125 "1/1" "0/1" "1/1"
## HiC_scaffold_2_21748201 "1/1" "1/1" "1/1"
## HiC_scaffold_2_33187764 "0|1" "1|1" "0/0"
## HiC_scaffold_2_33187770 "1|1" "1|1" "0/0"
## HiC_scaffold_2_33187959 "0/1" "1/1" "0/0"
## HiC_scaffold_2_41603929 "0|1" "0/1" "0/1"
## HiC_scaffold_2_52233191 "0/1" NA "0/0"
## HiC_scaffold_2_52400748 "0/0" "1/1" NA
## HiC_scaffold_2_52403793 "0/1" "1|1" NA
## HiC_scaffold_2_52799130 "1/1" "1/1" "1/1"
## HiC_scaffold_20_10332897 "0/0" "0/1" "0/1"
## HiC_scaffold_20_17198418 "0/1" "0/0" "0/0"
## HiC_scaffold_20_17915398 "0/0" "1|1" "0/1"
## HiC_scaffold_20_18872955 "0/0" "0/0" "1/1"
## HiC_scaffold_20_19055301 "1/1" "0/0" "1/1"
## HiC_scaffold_20_19150094 "1/1" "1/1" "0/1"
## HiC_scaffold_20_20651022 "0/0" NA "0/0"
## HiC_scaffold_20_22651296 "1/1" "1/1" "0/0"
## HiC_scaffold_21_2009156 "1|1" "1|1" "0|1"
## HiC_scaffold_21_2435648 "0/0" "0/0" "0/0"
## HiC_scaffold_21_7164210 "0/0" "0/0" "0|1"
## HiC_scaffold_21_9786512 "1/1" "0/1" "0/1"
## HiC_scaffold_21_12424922 "1/1" "1/1" "1/1"
## HiC_scaffold_21_17966833 "1/1" "1/1" "1/1"
## HiC_scaffold_21_19025429 "1|1" "0/0" "0/0"
## HiC_scaffold_21_20058318 NA "0/0" "0|1"
## HiC_scaffold_21_20562855 "0/0" NA "0|1"
## HiC_scaffold_21_20661860 "0/0" "0/1" "0/0"
## HiC_scaffold_21_20895395 "0/0" "0/0" "1|1"
## HiC_scaffold_21_21158811 "1|1" "2|2" NA
## HiC_scaffold_21_22250857 "0/1" "0/1" NA
## HiC_scaffold_21_22250866 "0|1" "0/0" NA
## HiC_scaffold_21_22257737 "1|1" "1/1" "1/1"
## HiC_scaffold_21_22644667 "1|1" "1|1" "1|1"
## HiC_scaffold_21_22644673 "1|1" "1|1" "1|1"
## HiC_scaffold_21_22666888 "0/0" NA "0/0"
## HiC_scaffold_21_23905416 "0/0" "0/0" "0/0"
## HiC_scaffold_21_23981651 "0/0" "0/0" "1|1"
## HiC_scaffold_21_24287068 "0/0" "1/1" "0/0"
## HiC_scaffold_21_30798434 "0/0" NA "0/0"
## HiC_scaffold_21_35006232 "1/1" "1/1" "0/0"
## HiC_scaffold_21_35779294 "0/0" "1/1" "0/0"
## HiC_scaffold_22_124910 "0/1" "0/0" "0/0"
## HiC_scaffold_22_751023 "0/1" NA "1|1"
## HiC_scaffold_22_1042644 "0/0" "0/0" "1|1"
## HiC_scaffold_22_1044708 "1/1" "1/1" "1/1"
## HiC_scaffold_22_2174911 "1/1" "0/0" "1/1"
## HiC_scaffold_22_3431122 "0/0" "0/0" "0/0"
## HiC_scaffold_22_3446787 "1|1" "0/0" "1|1"
## HiC_scaffold_22_3451756 "1|1" NA "1|1"
## HiC_scaffold_22_3720435 "0/0" "0/1" "1/1"
## HiC_scaffold_22_4065466 "0|1" NA NA
## HiC_scaffold_22_4739889 "0/0" "0/0" "0/0"
## HiC_scaffold_22_4918263 "1|1" "1|1" "1|1"
## HiC_scaffold_22_5750008 "1/1" NA "1/1"
## HiC_scaffold_22_5769942 "0/0" NA "0/0"
## HiC_scaffold_22_28264522 "0/1" "0/0" "0/0"
## HiC_scaffold_22_28265115 "0/1" "0/0" "0/0"
## HiC_scaffold_22_29205851 "0/1" "1/1" "1/1"
## HiC_scaffold_22_29822340 "1/1" NA "1/1"
## HiC_scaffold_22_30797357 "0|1" "0/0" "1/1"
## HiC_scaffold_22_32042610 "1|1" "1|1" "1|1"
## HiC_scaffold_23_11215327 "0/0" "0/0" "0/0"
## HiC_scaffold_23_27081333 "0/1" "1/1" "1/1"
## HiC_scaffold_23_28672255 "0/0" "0/0" "1/1"
## HiC_scaffold_23_29218828 "0/0" "0/0" "0/0"
## HiC_scaffold_23_32528768 "0/0" "0/0" "0/0"
## HiC_scaffold_23_32669383 "0/1" "1/1" "0/0"
## HiC_scaffold_23_33199663 "0/1" "1/1" "0/0"
## HiC_scaffold_23_33245843 "1/1" "0/0" "0/0"
## HiC_scaffold_23_40824545 "0|1" "1|1" "0/0"
## HiC_scaffold_23_41504669 "0/1" "0/0" "0/0"
## HiC_scaffold_24_16622654 "0|1" NA "0/0"
## HiC_scaffold_24_16622681 "0|1" NA "0/1"
## HiC_scaffold_24_19851560 "0/1" NA "1|1"
## HiC_scaffold_24_20590563 "1/1" NA "1/1"
## HiC_scaffold_24_27745754 "0/1" "0/0" "0/0"
## HiC_scaffold_24_28763699 "1|1" "0/0" "1|1"
## HiC_scaffold_24_28763703 "1|1" NA "1|1"
## HiC_scaffold_25_4135969 "1/1" "0/1" "0/0"
## HiC_scaffold_25_4201677 "1/1" "0/0" "0/0"
## HiC_scaffold_25_5872831 "1/1" "1/1" "1/1"
## HiC_scaffold_25_6879627 "0/1" "0/0" "0/0"
## HiC_scaffold_25_8172813 "1/1" "1|1" "1/1"
## HiC_scaffold_25_9969507 "0/1" "1|1" "0/1"
## HiC_scaffold_25_10691336 "0/0" "0/1" "0/0"
## HiC_scaffold_25_21286462 "1/1" "0/0" "0/0"
## HiC_scaffold_26_4086662 "0/0" NA "1/1"
## HiC_scaffold_26_7539671 "0/0" "0/0" "1|1"
## HiC_scaffold_26_8348511 "1/1" NA "0/0"
## HiC_scaffold_26_9043748 "1|1" NA "1|1"
## HiC_scaffold_26_9045655 "0/1" "1|1" NA
## HiC_scaffold_26_11253181 "0/1" "0/0" "1/1"
## HiC_scaffold_26_17828344 "1/1" NA "1/1"
## HiC_scaffold_26_17932520 "1/1" "1/1" "1/1"
## HiC_scaffold_26_17941459 "1/1" "1/1" "0/0"
## HiC_scaffold_26_17960877 "1/1" "1/1" "1/1"
## HiC_scaffold_26_18284041 "0/0" "0/0" "0/1"
## HiC_scaffold_26_18288701 "1|1" "1|1" "0/0"
## HiC_scaffold_26_18294422 "0/1" "0/0" NA
## HiC_scaffold_26_21307365 "1/1" "1/1" "0/0"
## HiC_scaffold_26_22159924 "1/1" "1/1" NA
## HiC_scaffold_26_22161535 "1/1" "1/1" "0/2"
## HiC_scaffold_26_24794176 "0/1" "1/1" "1/1"
## HiC_scaffold_26_28538113 "0/0" "1|1" "1|1"
## HiC_scaffold_26_29031357 "1/1" "1/1" "1/1"
## HiC_scaffold_26_29163462 "0/1" "0/1" "0/0"
## HiC_scaffold_26_42631018 NA NA "0/0"
## HiC_scaffold_26_42634814 "1/1" "1/1" "1/1"
## HiC_scaffold_26_43483190 "0/0" "0/1" "1|1"
## HiC_scaffold_26_49955889 "1/1" "1/1" "0/0"
## HiC_scaffold_26_58342510 "1|1" "1|1" "0/0"
## HiC_scaffold_27_1496120 "1|1" "0/0" "1|1"
## HiC_scaffold_27_1947057 "0/0" NA "1/1"
## HiC_scaffold_27_2359058 "0|1" "0/1" "0/0"
## HiC_scaffold_27_2699645 "0/0" "0/0" "0/0"
## HiC_scaffold_27_4425475 "0/0" "0/0" "0/0"
## HiC_scaffold_27_7539469 "0/0" "0/0" "1|1"
## HiC_scaffold_27_7777122 "0/1" NA "0/0"
## HiC_scaffold_27_16657070 "0/0" "0/0" "0/0"
## HiC_scaffold_27_24539255 "0|1" "0/1" "0|1"
## HiC_scaffold_27_34642359 "1|1" NA "1|1"
## HiC_scaffold_27_34647277 "0/0" "2|2" "0/0"
## HiC_scaffold_27_35380535 "0/1" "1/1" "1/1"
## HiC_scaffold_27_35383230 "1|1" "1|1" "0/1"
## HiC_scaffold_28_21261390 "1|1" "1|1" "0/0"
## HiC_scaffold_28_24490442 "1/1" "1/1" "1/1"
## HiC_scaffold_28_25601927 "0/0" "1/1" "0/0"
## HiC_scaffold_28_31793968 "1/1" "0|1" NA
## HiC_scaffold_28_32126687 "0/0" NA "0/0"
## HiC_scaffold_28_34779518 "0/0" "0/0" "1/1"
## HiC_scaffold_28_36042491 "0/0" "1/1" "1/1"
## HiC_scaffold_28_36692361 "0/1" "0|1" NA
## HiC_scaffold_28_38672993 "0/0" NA "0/1"
## HiC_scaffold_28_39640526 "1/1" "1/1" "0/0"
## HiC_scaffold_28_40169242 NA "0/0" "0/1"
## HiC_scaffold_28_41059640 "1|1" "1|1" "1|1"
## HiC_scaffold_28_42514830 "1|1" "1/1" "0/1"
## HiC_scaffold_28_42601570 NA "1/1" "1/1"
## HiC_scaffold_28_42601585 "0/0" "0/0" "0/0"
## HiC_scaffold_28_43018803 "0/0" "0/1" "0/1"
## HiC_scaffold_28_43036165 "0/0" "0/0" "0/0"
## HiC_scaffold_29_344317 "0/0" "1/1" "0/1"
## HiC_scaffold_29_3811176 "0/1" "0/1" "0|1"
## HiC_scaffold_29_6073993 "1|1" NA "0/0"
## HiC_scaffold_29_6415222 "0/1" "0/0" "0/0"
## HiC_scaffold_29_8224424 "1/1" "0/0" "0/0"
## HiC_scaffold_29_11153624 "1/1" NA "0/0"
## HiC_scaffold_29_11153712 "0/1" "0/0" "1/1"
## HiC_scaffold_29_11167966 "0/1" "0/0" "1/1"
## HiC_scaffold_29_11491468 "0/0" "0/0" "1/1"
## HiC_scaffold_29_12103558 "0/1" NA "0/0"
## HiC_scaffold_29_14279322 "1/1" "0/0" "0/0"
## HiC_scaffold_29_14913907 "0/1" NA "0/1"
## HiC_scaffold_29_16378276 "1/1" "1/1" "1/1"
## HiC_scaffold_29_20635937 "0/0" "1/1" "1/1"
## HiC_scaffold_29_20636787 "0/1" NA "0/1"
## HiC_scaffold_29_22560215 "0/0" "1/1" "0/0"
## HiC_scaffold_29_22561144 "1/1" "0/1" "1/1"
## HiC_scaffold_29_24017849 "0/0" NA "0/0"
## HiC_scaffold_29_31603590 "1/1" NA "0/0"
## HiC_scaffold_3_21670751 "0/0" "0/0" "0/0"
## HiC_scaffold_3_24747014 "0/0" "0/1" "0/1"
## HiC_scaffold_3_27861792 "1/1" "0/0" "1/1"
## HiC_scaffold_3_28057869 "0/1" NA "1/1"
## HiC_scaffold_3_28441436 NA "0/0" "0/1"
## HiC_scaffold_3_28694380 "0/0" "1|1" "0/0"
## HiC_scaffold_3_31361023 "0/1" "1/1" "1/1"
## HiC_scaffold_3_31960572 "1|1" NA "0/0"
## HiC_scaffold_3_32157169 "0/0" "1/1" "0/0"
## HiC_scaffold_3_32159152 "0/0" NA "1/1"
## HiC_scaffold_3_34124237 "0/0" "0/0" "0/0"
## HiC_scaffold_30_14199802 "1/1" "0/0" "1/1"
## HiC_scaffold_30_16052331 "1/1" NA "0/0"
## HiC_scaffold_30_19914075 NA "1/1" "1/1"
## HiC_scaffold_30_20688783 "0/0" "1/1" "0/0"
## HiC_scaffold_30_21446076 "0/0" "0/0" "0/0"
## HiC_scaffold_30_21598563 "1/1" NA "0/0"
## HiC_scaffold_30_22155728 "1|1" "1|1" NA
## HiC_scaffold_31_687411 "0/1" "0/0" "1/1"
## HiC_scaffold_31_3224722 NA "0/0" NA
## HiC_scaffold_31_3574854 "0/0" "0/1" "0/1"
## HiC_scaffold_31_5899551 "1|1" "1|1" "1/1"
## HiC_scaffold_31_5911491 "0|1" "0/0" "0/0"
## HiC_scaffold_31_6297680 "1/1" NA "0/0"
## HiC_scaffold_31_12394016 "0/0" "0/1" "1|1"
## HiC_scaffold_31_12394040 "0/0" "0/1" "0/0"
## HiC_scaffold_31_18612650 "0/0" "0/0" "1/1"
## HiC_scaffold_32_4446859 "0/0" "0/0" "0/0"
## HiC_scaffold_32_5274796 "1/1" "0/0" "0/0"
## HiC_scaffold_32_5275108 "0/0" "1/1" "1/1"
## HiC_scaffold_32_5282358 "0/1" "0/0" NA
## HiC_scaffold_32_5450203 "1|1" "1|1" "0/0"
## HiC_scaffold_32_44200178 "0/0" "1/1" "1/1"
## HiC_scaffold_33_638523 NA NA "0/0"
## HiC_scaffold_33_44489563 "0/0" "0/0" "1/1"
## HiC_scaffold_33_44489988 "0/0" "0/0" "0/0"
## HiC_scaffold_33_47080180 "1/1" "0/1" "1/1"
## HiC_scaffold_33_47495907 NA "0/0" "1/1"
## HiC_scaffold_33_51865876 "0/0" NA "0/0"
## HiC_scaffold_34_1096982 "0/1" "0/1" "0/1"
## HiC_scaffold_34_6091943 NA "0/0" "1|1"
## HiC_scaffold_34_6100160 "1|1" NA "1|1"
## HiC_scaffold_34_24368584 "0/1" "1/1" "0/0"
## HiC_scaffold_35_3233120 "1/1" "1/1" NA
## HiC_scaffold_35_3253574 "0/1" "0/1" "0/1"
## HiC_scaffold_35_5512296 "0/0" "0/1" "0/0"
## HiC_scaffold_35_15114788 "0/1" "0/0" "0/1"
## HiC_scaffold_35_21214090 "0/0" "0/0" "0/0"
## HiC_scaffold_35_21462564 "0/1" NA "0/1"
## HiC_scaffold_35_22746783 "0/0" "1/1" "0/1"
## HiC_scaffold_35_22747085 "0/0" "0/0" "1|1"
## HiC_scaffold_35_23059580 "0/0" "0/0" "1/1"
## HiC_scaffold_35_23158882 "0/0" NA "0/1"
## HiC_scaffold_35_23261143 "1/1" NA "0/0"
## HiC_scaffold_35_24403602 NA "1/1" "0/0"
## HiC_scaffold_35_24403620 NA "1/1" NA
## HiC_scaffold_35_24993986 "0/1" "0/1" "1/1"
## HiC_scaffold_35_24993998 "0/1" "0|1" "0/0"
## HiC_scaffold_36_1538038 "0/0" "0/1" "0/1"
## HiC_scaffold_36_2464728 "0|1" NA "0/0"
## HiC_scaffold_36_5489050 "0/1" "0/0" "0/0"
## HiC_scaffold_36_9673981 NA NA "1|1"
## HiC_scaffold_36_9674127 "1/1" "1/1" "1/1"
## HiC_scaffold_36_9674756 "1/1" "1/1" "1/1"
## HiC_scaffold_36_9676329 "1/1" "0/1" "1/1"
## HiC_scaffold_36_12304516 "0/0" "0/0" "0/0"
## HiC_scaffold_36_12515555 "0/0" "1|1" "0/0"
## HiC_scaffold_36_13092647 "0/1" "0|1" "0/0"
## HiC_scaffold_36_13766994 "0/0" "0/0" "1/1"
## HiC_scaffold_36_14567741 "1/1" "1/1" "0/1"
## HiC_scaffold_36_15530578 "1|1" "1|1" "1|1"
## HiC_scaffold_37_679894 "1/1" "1/1" "1/1"
## HiC_scaffold_37_916693 "0/0" "1|1" "0/0"
## HiC_scaffold_37_928146 "1/1" "1/1" NA
## HiC_scaffold_37_1256768 "0/0" NA "0/0"
## HiC_scaffold_37_1270034 "0/1" "0/1" "1/1"
## HiC_scaffold_37_1770997 "0/0" "0/0" "0/0"
## HiC_scaffold_37_1798298 "0/0" "0/0" "0|1"
## HiC_scaffold_37_2010342 "0/0" "1|1" "1|1"
## HiC_scaffold_37_2141526 "0/0" "0/1" "0/0"
## HiC_scaffold_37_3952190 "1|1" "0/0" "0|1"
## HiC_scaffold_37_3952215 "1|1" "0/0" "0|1"
## HiC_scaffold_37_9915037 "0/0" "0/0" "0/1"
## HiC_scaffold_38_5383430 "0/0" "0/0" "0/0"
## HiC_scaffold_38_5668363 "0/1" "0/0" "0/1"
## HiC_scaffold_38_5879849 "0|1" "0/0" "0/0"
## HiC_scaffold_38_5880155 "0/0" NA "1/1"
## HiC_scaffold_38_10612790 "1|1" "0/0" "1/1"
## HiC_scaffold_38_11940240 "0/0" "0/0" "2|2"
## HiC_scaffold_38_12878826 "1|1" "0/0" NA
## HiC_scaffold_38_12959698 "1|1" "1/1" "0/0"
## HiC_scaffold_38_13087368 "1/1" NA "1/1"
## HiC_scaffold_38_13480648 "0/0" "0|1" "1|1"
## HiC_scaffold_38_13965243 "1/1" "1/1" "0/1"
## HiC_scaffold_38_14089955 NA NA "1/1"
## HiC_scaffold_38_14408072 "0|1" "0/0" "0|1"
## HiC_scaffold_38_14931216 "0/1" NA "0|1"
## HiC_scaffold_38_14978356 "1|1" "1|1" "0/0"
## HiC_scaffold_38_14978367 "1|1" "1|1" "0/0"
## HiC_scaffold_38_15292863 "1/1" "1/1" "0/1"
## HiC_scaffold_38_15306135 "0/1" "1|1" "1|1"
## HiC_scaffold_38_16077506 "1|1" "0/0" "1|1"
## HiC_scaffold_38_16138965 "0/1" NA NA
## HiC_scaffold_38_16226040 "0/1" "1/1" "1/1"
## HiC_scaffold_39_1393769 "0/0" "0/0" "1|1"
## HiC_scaffold_39_2014970 NA "0/0" "0/0"
## HiC_scaffold_39_2014982 "0/0" "0/0" "0/0"
## HiC_scaffold_39_2014985 "0/0" "0/0" "0/0"
## HiC_scaffold_39_2426443 "0/0" "0/0" "0/0"
## HiC_scaffold_39_2485330 "1/1" "0/0" "0/0"
## HiC_scaffold_39_3350506 "0/0" "0/0" "1|1"
## HiC_scaffold_39_5897388 NA "1|1" "1|1"
## HiC_scaffold_39_17631133 "0/0" "0/0" "0/1"
## HiC_scaffold_4_12107187 "0/1" NA "0/0"
## HiC_scaffold_4_18241670 "1|1" "1|1" "0|1"
## HiC_scaffold_4_18241723 "1|1" "1|1" "0|1"
## HiC_scaffold_4_22418566 "0/0" "1|1" "1|1"
## HiC_scaffold_4_27899990 "0/0" "0/1" "0/0"
## HiC_scaffold_4_35575118 "0/0" "0|0" "0/1"
## HiC_scaffold_4_38000967 "1/1" "1/1" "1/1"
## HiC_scaffold_4_50654021 "0/0" "0/0" "0/1"
## HiC_scaffold_40_2243415 "0/0" NA "0/0"
## HiC_scaffold_40_3000572 "0/0" "0/0" "0/0"
## HiC_scaffold_40_3014177 "1|1" "1|1" "1|1"
## HiC_scaffold_40_3027900 "1/1" NA "0/0"
## HiC_scaffold_40_3143834 "0/0" "1/1" "0/0"
## HiC_scaffold_40_3843942 "0/0" "0/0" "0/0"
## HiC_scaffold_40_3847620 NA "0/0" "1|1"
## HiC_scaffold_40_3891007 "0/0" NA "1/1"
## HiC_scaffold_40_3920667 "0/0" "2/2" "2/2"
## HiC_scaffold_40_4177963 "0/0" "0/0" "0/0"
## HiC_scaffold_40_4819107 "0/1" "1/1" NA
## HiC_scaffold_40_4819834 "0|1" "0/0" "0|1"
## HiC_scaffold_40_5788271 "0/0" "0/0" "0/0"
## HiC_scaffold_40_5965269 "0/1" "0/0" "1|1"
## HiC_scaffold_40_6204154 "0/1" "0/0" "0/0"
## HiC_scaffold_40_8387917 "0/0" "0/1" "1/1"
## HiC_scaffold_41_3235384 "0/0" "0/2" NA
## HiC_scaffold_41_3583000 "1/1" "0/0" "0/0"
## HiC_scaffold_41_5334504 "1/1" "0/0" "1/1"
## HiC_scaffold_41_5387631 "0/0" NA "0/0"
## HiC_scaffold_41_6423426 "1/1" "1/1" "1/1"
## HiC_scaffold_41_14359947 "0/1" "0/0" "0/1"
## HiC_scaffold_41_24007593 "1|1" "1|1" "1|1"
## HiC_scaffold_41_26225447 "0/0" NA NA
## HiC_scaffold_41_28626484 "1/1" NA "1/1"
## HiC_scaffold_41_28660620 "0|1" "0/0" "0/0"
## HiC_scaffold_41_31007688 "0/1" "1/1" "0/1"
## HiC_scaffold_42_1131084 "0/0" NA "0/1"
## HiC_scaffold_42_1818523 "0/0" "0/0" NA
## HiC_scaffold_42_2165002 "0/0" "0/2" NA
## HiC_scaffold_42_2711332 "0/0" NA "0/1"
## HiC_scaffold_42_6142699 "0/0" "1/1" "1/1"
## HiC_scaffold_42_6744976 "1/1" "0/0" "0/0"
## HiC_scaffold_42_8066919 "0/0" "0/0" "1|1"
## HiC_scaffold_42_8068292 "0|1" "0|1" "0/1"
## HiC_scaffold_42_12487888 "1|1" "0/0" "1/1"
## HiC_scaffold_42_41366687 "1/1" "0/1" "1/1"
## HiC_scaffold_42_47313337 "0/0" "0|1" "2|2"
## HiC_scaffold_42_47313338 "0/0" "0|1" "2|2"
## HiC_scaffold_42_50784971 "0/0" "0|1" "1|1"
## HiC_scaffold_42_50784977 "0/0" "0|1" "1|1"
## HiC_scaffold_42_50784981 "1/1" "0/1" "0/0"
## HiC_scaffold_42_51916989 "1/1" "1/1" "1/1"
## HiC_scaffold_43_3842003 "1/1" "1/1" "1/1"
## HiC_scaffold_43_14140861 "1|1" "1|1" "0/0"
## HiC_scaffold_43_15053605 "1/1" NA "1/1"
## HiC_scaffold_43_17289945 "1|1" "0/0" "0/0"
## HiC_scaffold_43_29967704 "0/0" "0/1" "1/1"
## HiC_scaffold_43_35745831 "0/0" "0|1" "0/1"
## HiC_scaffold_43_37627949 "1|1" "1|1" "0/1"
## HiC_scaffold_43_37628126 "0/1" "0/0" "1/1"
## HiC_scaffold_43_44017118 "0/0" NA "0/1"
## HiC_scaffold_43_55124138 "0/1" "0/0" "0/0"
## HiC_scaffold_43_60107326 "1|1" NA "0/0"
## HiC_scaffold_43_61359386 "0/0" "1/1" "1/1"
## HiC_scaffold_43_61702593 "0/0" NA "1|1"
## HiC_scaffold_43_61702606 "0/0" NA "1|1"
## HiC_scaffold_43_61702721 "1|1" "0/0" "0/0"
## HiC_scaffold_43_61702738 "0/0" NA "1/1"
## HiC_scaffold_43_62511703 "1|1" "0/0" "1|1"
## HiC_scaffold_43_64069457 "0/1" "0/0" "0/0"
## HiC_scaffold_43_64577269 "0/1" NA "0/0"
## HiC_scaffold_44_1920144 "1|1" "0/0" "0/1"
## HiC_scaffold_44_2148035 "1/1" "1/1" "0/1"
## HiC_scaffold_44_2568167 "0/0" "1/1" "1/1"
## HiC_scaffold_45_4180070 "1/1" NA "1/1"
## HiC_scaffold_45_4797754 "2/2" "0/2" "0/2"
## HiC_scaffold_45_5911123 NA "1|1" "0/0"
## HiC_scaffold_45_6958990 "1/1" "1/1" "1|1"
## HiC_scaffold_45_8516216 "0/0" "1|1" "1|1"
## HiC_scaffold_45_10191213 "0/0" "1/1" "1|1"
## HiC_scaffold_45_12005885 "0/1" "0/0" "0/1"
## HiC_scaffold_45_12006766 "1/1" "1/1" "1/1"
## HiC_scaffold_45_24736172 "0/0" "0/0" NA
## HiC_scaffold_45_24739830 "0/0" "0/0" "0|1"
## HiC_scaffold_46_9691567 "1|1" "0/1" NA
## HiC_scaffold_46_17380257 "0/1" "1/1" "0/1"
## HiC_scaffold_46_18387147 "0/0" "0/0" "0/0"
## HiC_scaffold_46_37092355 "0|1" NA "0/0"
## HiC_scaffold_46_39183624 "1|1" NA "0/0"
## HiC_scaffold_46_39390547 "1/1" "1/1" NA
## HiC_scaffold_46_42964941 "0/0" NA "1|1"
## HiC_scaffold_46_42986653 NA "0/0" "1/1"
## HiC_scaffold_46_52074364 NA "1|1" NA
## HiC_scaffold_46_54255667 "1/1" "1/1" "1/1"
## HiC_scaffold_47_3750532 "1/1" "0/1" "0/0"
## HiC_scaffold_47_3751345 "0/0" "0/0" "1/1"
## HiC_scaffold_47_15400639 "1|1" "1|1" "1|1"
## HiC_scaffold_47_24072414 "1|1" NA "1/1"
## HiC_scaffold_47_25273825 "1|1" NA "0|1"
## HiC_scaffold_48_8752752 "0/0" "0/0" "1/1"
## HiC_scaffold_48_10765920 "1/1" "0/0" "0/0"
## HiC_scaffold_48_16077918 NA "1|1" "1|1"
## HiC_scaffold_48_16077940 NA "1|1" "1|1"
## HiC_scaffold_48_16411609 "1/1" NA "0/0"
## HiC_scaffold_48_19972580 "0/0" "0/1" "0/0"
## HiC_scaffold_48_23493079 "1|1" "0/0" "0/0"
## HiC_scaffold_48_23597210 NA "1|1" "0/0"
## HiC_scaffold_48_24478493 "1/1" "0/1" "0/1"
## HiC_scaffold_48_24881148 "0/0" "0/0" "0/1"
## HiC_scaffold_48_25865723 "1/1" "1/1" "1/1"
## HiC_scaffold_48_25984068 "0|1" NA "0|1"
## HiC_scaffold_48_25989079 "0|1" "0/1" "0/0"
## HiC_scaffold_48_30601375 "0/0" "0/0" "1|1"
## HiC_scaffold_48_31662115 "1/1" NA "1/1"
## HiC_scaffold_48_41971562 "0/1" "0/0" "0/0"
## HiC_scaffold_49_3392801 "1|1" "0|1" "0/0"
## HiC_scaffold_49_6101692 "0/0" NA "1/1"
## HiC_scaffold_49_7996315 "1/1" "0/1" "0/0"
## HiC_scaffold_49_9470474 "0/1" "0/1" "1/1"
## HiC_scaffold_49_9886007 "0/1" "0/0" "1/1"
## HiC_scaffold_49_12592113 "0/0" "0/0" "0/0"
## HiC_scaffold_49_12741575 "1/1" "0/1" NA
## HiC_scaffold_49_15135019 "0/0" NA "1|1"
## HiC_scaffold_49_25906219 "0/0" "0/0" "0/1"
## HiC_scaffold_49_26614199 "0/0" "0/0" "0/0"
## HiC_scaffold_49_26655554 "0/1" "0/1" "0/0"
## HiC_scaffold_49_37568341 "1|1" "0/0" "1|1"
## HiC_scaffold_49_37568353 "1|1" "0/0" "1|1"
## HiC_scaffold_49_40002255 "0/0" "0/0" "0/0"
## HiC_scaffold_49_40003229 "0/1" "0/0" "1|1"
## HiC_scaffold_49_42966376 "1|1" "0/0" "0/0"
## HiC_scaffold_5_801252 "0/1" "1/1" "0/0"
## HiC_scaffold_5_1446603 "0|1" NA "0|1"
## HiC_scaffold_5_1446611 "0|1" NA "0|1"
## HiC_scaffold_5_1530759 "0/0" "0/0" "0/0"
## HiC_scaffold_5_1539275 "0/0" "0/0" NA
## HiC_scaffold_5_1789576 "0/0" "1|1" "1|1"
## HiC_scaffold_5_1808197 "0/1" NA NA
## HiC_scaffold_5_1808204 "0/1" "0/0" NA
## HiC_scaffold_5_1943895 "1|1" "0/0" "1|1"
## HiC_scaffold_5_1944469 "1/1" "1/1" "0/0"
## HiC_scaffold_5_2857283 "0/0" "0/0" "1/1"
## HiC_scaffold_5_4061378 "0/0" NA "0/0"
## HiC_scaffold_5_4340647 "0/1" "1|1" "0|1"
## HiC_scaffold_5_4435246 "1/1" NA "0/1"
## HiC_scaffold_5_8868783 "0/1" "0/0" "1/1"
## HiC_scaffold_50_4315969 "1/1" "1/1" "1|1"
## HiC_scaffold_50_11652296 "1/1" "1|1" "1|1"
## HiC_scaffold_50_11657309 "1/1" "0/1" "1/1"
## HiC_scaffold_50_15521027 "0/1" "0/0" "0/1"
## HiC_scaffold_50_21050962 "0/1" "0/0" "0/1"
## HiC_scaffold_50_23686202 "0|0" "1|1" "0/0"
## HiC_scaffold_50_27393462 NA "0/0" "0/0"
## HiC_scaffold_50_42586883 "0/1" "0/0" "0/0"
## HiC_scaffold_50_45087211 "0/0" "1/1" "1/1"
## HiC_scaffold_50_49796550 "1/1" "1/1" "1/1"
## HiC_scaffold_50_54383367 "0/0" "1|1" NA
## HiC_scaffold_50_63318678 "1/1" NA "0/1"
## HiC_scaffold_51_3521000 "0/0" "1/1" "1/1"
## HiC_scaffold_51_4681905 "1/1" "1/1" "1/1"
## HiC_scaffold_51_6305599 "0/0" NA "0/0"
## HiC_scaffold_51_8530818 NA "1|1" "0/0"
## HiC_scaffold_51_11653312 "0/0" NA "0/0"
## HiC_scaffold_51_13138547 "1/1" NA "1/1"
## HiC_scaffold_51_14457091 "1|1" "0/0" NA
## HiC_scaffold_51_15512668 "0/0" NA "1/1"
## HiC_scaffold_51_17816346 "0/0" "0/0" "1/1"
## HiC_scaffold_51_19997934 NA NA "0/0"
## HiC_scaffold_51_19997936 NA NA "0/0"
## HiC_scaffold_51_20870773 "0/1" "0/0" "1/1"
## HiC_scaffold_51_26660104 "1|1" "1|1" "0/0"
## HiC_scaffold_51_40727521 NA "0/0" "0/0"
## HiC_scaffold_51_40892841 "0/0" "0/0" "0/1"
## HiC_scaffold_51_41717519 NA "1/1" "0/1"
## HiC_scaffold_51_42547638 "0/1" NA "1/1"
## HiC_scaffold_52_3335804 "0/0" "1/1" "0/0"
## HiC_scaffold_52_4149130 "0/1" NA "0/0"
## HiC_scaffold_52_6893679 "1|1" "1|1" "0/1"
## HiC_scaffold_52_13155416 "1/1" "1/1" "1/1"
## HiC_scaffold_52_13155437 "1|1" "1|1" "1|1"
## HiC_scaffold_52_13155442 "1|1" "1|1" "1|1"
## HiC_scaffold_52_14885688 NA "0/0" "0/1"
## HiC_scaffold_52_14895078 "1/1" "1/1" "1/1"
## HiC_scaffold_52_15141791 "1/1" "0/0" "0/0"
## HiC_scaffold_52_15743051 "1|1" "0/0" "1|1"
## HiC_scaffold_52_15760201 "0/0" NA "0/0"
## HiC_scaffold_52_15834589 "0/0" "0/1" "0/0"
## HiC_scaffold_52_15841769 "1/1" "0/0" "0/0"
## HiC_scaffold_52_15862421 "0/1" NA "0/0"
## HiC_scaffold_52_15970970 "0/0" NA "1/2"
## HiC_scaffold_52_16275237 "1/1" NA "0/1"
## HiC_scaffold_52_16275240 "0/0" "0/0" "0|1"
## HiC_scaffold_52_16275290 "0/1" "0/0" "0/1"
## HiC_scaffold_52_16524164 NA "0/0" NA
## HiC_scaffold_52_16524572 "1/1" "1/1" NA
## HiC_scaffold_52_16525647 "1/1" NA NA
## HiC_scaffold_52_16637047 "0/1" "0|1" "0/0"
## HiC_scaffold_52_17202127 "0/0" "0/0" "1|1"
## HiC_scaffold_52_17207724 "0/1" "0/1" "0/1"
## HiC_scaffold_52_17508820 "1|1" "1|1" "1|1"
## HiC_scaffold_52_17547593 "0/0" "0/1" "0/0"
## HiC_scaffold_52_17551239 "0/0" NA "0/1"
## HiC_scaffold_52_17560696 "0/0" NA "0/0"
## HiC_scaffold_52_17560699 "0/0" NA "0/0"
## HiC_scaffold_52_17741250 NA "0/0" "1/1"
## HiC_scaffold_52_17742260 "0|1" "0/0" "0/0"
## HiC_scaffold_52_18340578 "0/1" "1/1" "0/0"
## HiC_scaffold_52_18415911 "0/0" "0/0" "0/0"
## HiC_scaffold_52_22189517 "1/1" "0/1" "0/0"
## HiC_scaffold_52_22526592 "0/1" "0/0" "0/1"
## HiC_scaffold_52_26393471 "0/1" "0/1" "0/1"
## HiC_scaffold_52_26799380 "0/0" "0/0" "0/0"
## HiC_scaffold_52_31871931 "0/1" "0/0" "0/1"
## HiC_scaffold_52_31874283 "1|1" NA "1/1"
## HiC_scaffold_52_31874287 "1|1" "0/0" "0/0"
## HiC_scaffold_52_32161053 "1|1" "1|1" "1|1"
## HiC_scaffold_52_33165557 "1/1" "0/0" "0/0"
## HiC_scaffold_52_33897620 "0/1" "0/0" "0/1"
## HiC_scaffold_52_34763156 "0/0" "0/0" "0/1"
## HiC_scaffold_52_34763171 "0/0" "0/1" "0/0"
## HiC_scaffold_52_35174755 "0/1" "1|1" "0|1"
## HiC_scaffold_52_35608453 "0/0" "1/1" "0/0"
## HiC_scaffold_52_35608470 "0/0" "1|1" "0/0"
## HiC_scaffold_52_39464728 "0/0" "0/0" "0/0"
## HiC_scaffold_52_42141354 "0/0" "0/0" "0/0"
## HiC_scaffold_52_44675725 "1/1" "1/1" "1/1"
## HiC_scaffold_52_49935920 "0/0" "1/1" NA
## HiC_scaffold_53_21789524 "0/0" "1/1" "0/1"
## HiC_scaffold_53_25168042 "0|1" "0/0" "1/1"
## HiC_scaffold_53_26398989 NA "0/0" "0|1"
## HiC_scaffold_53_26398992 NA "0/0" "0|1"
## HiC_scaffold_53_26398994 NA "0/0" "0|1"
## HiC_scaffold_53_26549665 "1/1" "1/1" "1/1"
## HiC_scaffold_53_29227676 "0|1" "1|1" "0|1"
## HiC_scaffold_53_31250349 "1/1" NA "0/1"
## HiC_scaffold_54_530581 "1|1" "1|1" "1|1"
## HiC_scaffold_54_794095 "0/0" "1|1" "1|1"
## HiC_scaffold_54_1171109 "0/0" "0/0" "0/0"
## HiC_scaffold_54_1378956 NA "0/0" "0/0"
## HiC_scaffold_54_1380539 "0/0" "1/1" "1/1"
## HiC_scaffold_54_3045015 "0/1" "1/1" "1/1"
## HiC_scaffold_54_3185987 "1/1" NA NA
## HiC_scaffold_54_4401098 "1|1" "1|1" "0/0"
## HiC_scaffold_54_5595903 "0/1" NA "1/1"
## HiC_scaffold_54_5595921 "0/1" "0/0" "0/1"
## HiC_scaffold_54_5595928 "0/0" "0/0" "0/0"
## HiC_scaffold_54_5595949 "0/0" "0/0" "1/1"
## HiC_scaffold_54_6649662 "1/1" "1/1" "1/1"
## HiC_scaffold_54_8036734 "1|1" "1|1" NA
## HiC_scaffold_54_9206614 "1/1" "0/0" "0/0"
## HiC_scaffold_54_35913192 "0/1" "0/0" "1/1"
## HiC_scaffold_54_35913282 "0/1" "0|1" "0/0"
## HiC_scaffold_54_35913283 "0/1" "0|1" "0/0"
## HiC_scaffold_55_1260491 "1/1" "0/0" "0/1"
## HiC_scaffold_55_3254027 "0/0" "0/1" "0/0"
## HiC_scaffold_55_3281985 "1|1" "0/1" "0/0"
## HiC_scaffold_55_5409544 "0/1" "1/1" "0/0"
## HiC_scaffold_55_5411094 "1|1" "0/0" "0/0"
## HiC_scaffold_55_5411115 "1|1" "0/0" "0/0"
## HiC_scaffold_55_18121799 "1/1" "1/1" "1/1"
## HiC_scaffold_55_19605809 "0/0" "1|1" "1|1"
## HiC_scaffold_55_19605817 "1|1" "1|1" "1|1"
## HiC_scaffold_55_19605821 "1|1" "1|1" "1|1"
## HiC_scaffold_55_20195204 "0/0" "0/0" "0/0"
## HiC_scaffold_55_20886967 "0/0" "0/0" NA
## HiC_scaffold_55_23222937 "1/1" NA "0/0"
## HiC_scaffold_55_23626331 "0/0" "0/1" "1/1"
## HiC_scaffold_55_24539590 "0/0" "1/1" "0/0"
## HiC_scaffold_55_24585939 "0/1" "1/1" NA
## HiC_scaffold_55_34174151 "0/1" "0/1" "0/1"
## HiC_scaffold_56_17874332 "1/1" "0/0" "1/1"
## HiC_scaffold_56_18635259 NA "0/0" "1|1"
## HiC_scaffold_56_23654344 "1/1" "0/0" NA
## HiC_scaffold_56_35850533 "0/1" "1/1" "0/1"
## HiC_scaffold_56_35850539 "0/1" "0/0" "0/0"
## HiC_scaffold_56_40813556 "1/1" "0/0" "1/1"
## HiC_scaffold_56_53211633 "0/0" "0/1" "0/0"
## HiC_scaffold_56_60070829 "1/1" "1/1" "1/1"
## HiC_scaffold_56_73286017 "1|1" "0/1" "0/1"
## HiC_scaffold_56_73829442 "0/0" "2/2" "0|1"
## HiC_scaffold_56_73829443 "0/0" "2/2" "0|1"
## HiC_scaffold_56_76060304 "0/1" "0/0" "1|1"
## HiC_scaffold_57_25306408 "1/1" "0/0" "0/1"
## HiC_scaffold_57_29222385 "0/0" "0/1" "0|1"
## HiC_scaffold_57_29592432 "1/1" "0/0" NA
## HiC_scaffold_57_31472698 "0/0" "0/0" "0/0"
## HiC_scaffold_57_32371742 "0/0" "0/0" "1/1"
## HiC_scaffold_57_36495072 "0/0" NA "0/1"
## HiC_scaffold_57_37286264 NA "1/1" "1/1"
## HiC_scaffold_57_38537415 NA "0/1" "0|1"
## HiC_scaffold_57_45438854 "0/0" "2|2" "2|2"
## HiC_scaffold_57_52856874 "1/1" "0/0" "1/1"
## HiC_scaffold_57_53575355 "1/1" "1/1" "0/0"
## HiC_scaffold_57_55856783 "1/1" "1/1" "1/1"
## HiC_scaffold_58_1362614 "1/1" "1/1" NA
## HiC_scaffold_58_1432845 "1/1" "1/1" "1/1"
## HiC_scaffold_58_1541720 "0/0" "2/2" NA
## HiC_scaffold_58_2777120 "1/1" "0/0" NA
## HiC_scaffold_58_2973169 "1/1" "1/1" "1/1"
## HiC_scaffold_58_3243043 "0/0" NA NA
## HiC_scaffold_58_4035282 "0/0" NA "0/1"
## HiC_scaffold_58_5442157 "0/0" "0/0" "0/0"
## HiC_scaffold_58_8004631 "0/0" NA "0/0"
## HiC_scaffold_58_8058998 "1|1" "0/0" "0/0"
## HiC_scaffold_58_8932837 "0/0" "1/1" "0/1"
## HiC_scaffold_58_14814944 "0/0" NA "1/1"
## HiC_scaffold_58_15639988 "1/1" "1/1" "0/0"
## HiC_scaffold_58_15707198 "1/1" "0/0" "0/1"
## HiC_scaffold_58_15707258 "1/1" "0/0" "0/1"
## HiC_scaffold_58_15710623 "1/1" NA "0/0"
## HiC_scaffold_58_19155063 "0/0" "1|1" "0/0"
## HiC_scaffold_58_20224050 "1/1" "0/0" "0/0"
## HiC_scaffold_58_38475355 "0/0" "1/1" "1/1"
## HiC_scaffold_59_3979055 "0/1" NA "1/1"
## HiC_scaffold_59_5071810 "0/0" "0/0" "1|1"
## HiC_scaffold_59_5349936 "0/0" "0/0" "0/0"
## HiC_scaffold_59_5350114 "0/0" "0/0" "0/0"
## HiC_scaffold_59_7738302 "0/1" "1/1" "0/0"
## HiC_scaffold_59_7738351 "0/1" "1/1" "0/0"
## HiC_scaffold_59_7958561 "1|1" "0/0" "1|1"
## HiC_scaffold_59_9273798 NA "1/1" "0/0"
## HiC_scaffold_59_50928099 "0/1" "0/0" "0/0"
## HiC_scaffold_59_52960060 "0/0" "0/0" NA
## HiC_scaffold_6_10569023 "1/1" "0/0" "0/0"
## HiC_scaffold_6_10711445 "1/1" "0/1" NA
## HiC_scaffold_6_13209200 "0/1" NA "0/0"
## HiC_scaffold_6_13213107 "0/0" NA "0/1"
## HiC_scaffold_6_13311684 "0/0" "1|1" "0/0"
## HiC_scaffold_6_15670783 "0/0" "0/0" "0/0"
## HiC_scaffold_6_19111232 "0/1" "0/0" "0/0"
## HiC_scaffold_6_32805498 "1/1" "0/1" "1/1"
## HiC_scaffold_6_38793174 "0|1" "0/0" "0/0"
## HiC_scaffold_6_41092101 "1|1" "1|1" "1|1"
## HiC_scaffold_6_41342933 "1/1" "0/1" "0/1"
## HiC_scaffold_6_47594508 "1/1" "0/1" "1/1"
## HiC_scaffold_60_70878 "1|1" "1|1" "1|1"
## HiC_scaffold_60_99549 "0/0" "1|1" "0/0"
## HiC_scaffold_60_201823 "0/1" "1/1" "1/1"
## HiC_scaffold_60_712969 "1|1" "0/0" "0|1"
## HiC_scaffold_60_744783 "1/1" NA "0/1"
## HiC_scaffold_60_744788 "0|1" "0/0" "0/1"
## HiC_scaffold_60_22142128 "1/1" "0/1" "1/1"
## HiC_scaffold_60_27599770 "1/1" "1/1" "1/1"
## HiC_scaffold_60_30608878 "1|1" "1/1" "1|1"
## HiC_scaffold_60_32657324 "0/1" "0/0" "1/1"
## HiC_scaffold_60_32672580 "1/1" NA NA
## HiC_scaffold_60_38856893 "0/0" "1/1" NA
## HiC_scaffold_60_39028335 "1/1" "1/1" "1/1"
## HiC_scaffold_60_40296869 "1/1" "0/0" "0/1"
## HiC_scaffold_60_42775723 "0/0" "0/0" "1/1"
## HiC_scaffold_60_44687906 "1/1" "0/1" "0/0"
## HiC_scaffold_60_44804601 "0/0" "1/1" "1/1"
## HiC_scaffold_60_53696867 "0|1" "0/0" "0/0"
## HiC_scaffold_60_53696868 "0|1" "0/0" "0/0"
## HiC_scaffold_60_60651515 "0|0" NA "0/0"
## HiC_scaffold_60_70678462 "1|1" NA "0/1"
## HiC_scaffold_61_2205328 "0/0" "0/0" "0/0"
## HiC_scaffold_61_2491706 "1/1" "1/1" NA
## HiC_scaffold_61_4009916 "0/2" "2/2" NA
## HiC_scaffold_61_4062917 "0/0" "1/1" NA
## HiC_scaffold_61_4122763 "1|1" "1|1" "1|1"
## HiC_scaffold_61_4216461 "1/1" "0/0" NA
## HiC_scaffold_61_4325053 "0/1" NA "1/1"
## HiC_scaffold_61_9004838 "1|1" "1|1" "1|1"
## HiC_scaffold_61_14635083 "1|1" NA "0/1"
## HiC_scaffold_62_1128608 "1/1" "0/0" "0/0"
## HiC_scaffold_62_11335200 "0|1" "0/0" NA
## HiC_scaffold_62_18828476 "1/1" NA "1/1"
## HiC_scaffold_62_21548870 "1|1" "1|1" "1|1"
## HiC_scaffold_62_23103274 "0/0" "1/1" "1/1"
## HiC_scaffold_62_25793456 "1/1" "0/0" "0/0"
## HiC_scaffold_62_25887474 "0/0" "1/1" "0/0"
## HiC_scaffold_62_28516096 "0|1" "1|1" NA
## HiC_scaffold_62_28516099 "0|1" "1|1" NA
## HiC_scaffold_62_28818725 "0/0" "0/0" NA
## HiC_scaffold_62_28818729 "1/1" "1/1" NA
## HiC_scaffold_62_45207353 "0/0" "0/0" "0/0"
## HiC_scaffold_63_3092269 "1/1" NA "1/1"
## HiC_scaffold_63_3977940 "1/1" NA "0/0"
## HiC_scaffold_63_4084937 "0/1" "0/0" NA
## HiC_scaffold_63_4196326 "0|1" "0/0" "1|1"
## HiC_scaffold_63_6262453 "0/0" "0/0" "0/0"
## HiC_scaffold_63_6350204 "1/1" NA "0/0"
## HiC_scaffold_63_6458794 "0/1" NA "0/0"
## HiC_scaffold_64_9162978 "1|1" "0/0" "0/0"
## HiC_scaffold_64_16876561 "0/0" "0/0" "0|1"
## HiC_scaffold_64_17543009 "0/0" "0/1" NA
## HiC_scaffold_64_18925356 "1/1" "0/1" "0/1"
## HiC_scaffold_64_19133050 "0|1" "0/0" "0/0"
## HiC_scaffold_64_19627769 "1|1" "1|1" "1|1"
## HiC_scaffold_64_20477250 "0/1" "1/1" "0/0"
## HiC_scaffold_64_22816677 "0/0" NA "0/0"
## HiC_scaffold_64_22954654 "0|1" "0|1" "0|0"
## HiC_scaffold_64_22954658 "0|1" "0|1" "0|0"
## HiC_scaffold_64_22954682 "1/1" "0/1" "0/0"
## HiC_scaffold_65_6829971 "1/1" "0/0" "0/0"
## HiC_scaffold_65_8071102 "0/0" "1/1" "0/1"
## HiC_scaffold_65_9023979 "0/0" "0/0" "0/1"
## HiC_scaffold_65_9839671 "1/1" "0/1" "0/0"
## HiC_scaffold_65_10404778 "1|1" "0/0" "1|1"
## HiC_scaffold_65_11327791 "1/1" "1/1" "1/1"
## HiC_scaffold_65_11332104 "1/1" "0/0" "0/0"
## HiC_scaffold_65_34823822 "1|1" "0/0" "0/0"
## HiC_scaffold_65_51418017 "1/1" "1/1" "0/0"
## HiC_scaffold_65_54053979 "1|1" NA "1|1"
## HiC_scaffold_65_57110875 "0|1" "0/0" "0/0"
## HiC_scaffold_66_15615363 NA "0/1" "0/0"
## HiC_scaffold_66_15672090 "0/0" "0/0" "0/1"
## HiC_scaffold_66_17903445 "0|1" "0/0" "0|1"
## HiC_scaffold_66_18298629 "1|1" NA "0/0"
## HiC_scaffold_66_19730676 "0/0" "1|1" NA
## HiC_scaffold_66_23688768 "0/1" NA "0/1"
## HiC_scaffold_66_26614535 "0/1" "0/0" "0/0"
## HiC_scaffold_66_27445665 "0/1" "0|1" "1|1"
## HiC_scaffold_66_29457165 "0/1" "1/1" "0/1"
## HiC_scaffold_66_29457180 "1/1" "0/0" "0/1"
## HiC_scaffold_66_30116287 "1|1" "1|1" "1|1"
## HiC_scaffold_66_31603503 "0/0" "0/0" "0/0"
## HiC_scaffold_66_33261460 "0/1" NA "0/1"
## HiC_scaffold_66_34138981 "0/1" "0/1" "0/0"
## HiC_scaffold_66_34139020 "0/0" "0/0" "1/1"
## HiC_scaffold_66_34142862 "0/0" "0/0" "0/1"
## HiC_scaffold_67_1404390 "1/1" "1/1" "1/1"
## HiC_scaffold_67_28493665 "1/1" NA "0/0"
## HiC_scaffold_67_30243885 "1/1" NA "0/0"
## HiC_scaffold_67_31511806 "0/0" "1|1" "1|1"
## HiC_scaffold_67_34638092 "1/1" "1/1" NA
## HiC_scaffold_67_37534720 "1/1" NA "1/1"
## HiC_scaffold_67_39679546 "0/1" NA "1/1"
## HiC_scaffold_67_39854918 "0/0" "0/0" "0/0"
## HiC_scaffold_67_39860738 "0/1" "1/1" "0/1"
## HiC_scaffold_67_40331656 "0/0" NA NA
## HiC_scaffold_67_40824747 "1|1" "0/1" "1|1"
## HiC_scaffold_68_3438132 "0|1" "1|1" "1|1"
## HiC_scaffold_68_3438133 "0|1" "1|1" "1|1"
## HiC_scaffold_68_11206902 "0/1" "0/0" "0/0"
## HiC_scaffold_68_32770607 "1|1" "1|1" "1|1"
## HiC_scaffold_68_34016823 "1/1" "0/2" "0/0"
## HiC_scaffold_68_34020019 "1/1" NA "0/1"
## HiC_scaffold_68_40296057 "0/0" "0/0" "0/0"
## HiC_scaffold_68_40296059 "0/0" "0/0" "0/0"
## HiC_scaffold_68_65001879 "1/1" "1/1" "1/1"
## HiC_scaffold_69_23311147 "1|1" "0/0" "1/1"
## HiC_scaffold_69_27351303 "0/0" "0/0" "1/1"
## HiC_scaffold_69_29437208 "0|1" "0/0" NA
## HiC_scaffold_69_33699381 "1|1" "1|1" "1|1"
## HiC_scaffold_69_40194698 "0/1" "0/0" "1/1"
## HiC_scaffold_69_48273575 NA NA "1/1"
## HiC_scaffold_69_48348026 "0/1" "0/1" "0|1"
## HiC_scaffold_69_48348034 "0/1" "0/0" "0/1"
## HiC_scaffold_69_49563252 "0/0" "1/1" NA
## HiC_scaffold_69_49593952 "1/1" NA "0/0"
## HiC_scaffold_69_49859037 "1|1" "0/0" "0/0"
## HiC_scaffold_69_51271238 "0/1" "0/0" "0/1"
## HiC_scaffold_69_51529836 "0/0" "0/0" "0/0"
## HiC_scaffold_69_57313650 "0/0" "1|1" "0/0"
## HiC_scaffold_69_57359194 "1/1" "0/0" "1|1"
## HiC_scaffold_6951_523650 "0/1" "0/0" "0/0"
## HiC_scaffold_6951_897126 "0/0" "0/0" "0/0"
## HiC_scaffold_6951_1134482 "1|1" "0/1" "0/0"
## HiC_scaffold_6951_2484960 "0/0" NA NA
## HiC_scaffold_6951_3301273 NA "1|1" "1|1"
## HiC_scaffold_6951_3314609 "0/0" "0/0" "0/0"
## HiC_scaffold_6951_3945993 "0/0" "0/0" "0/0"
## HiC_scaffold_6958_218293 "0/0" "0/0" "0/0"
## HiC_scaffold_6958_449143 "0/1" "0/1" "1/1"
## HiC_scaffold_7_351023 "1/1" "1/1" "1/1"
## HiC_scaffold_7_488024 "0/0" "0/0" "0/0"
## HiC_scaffold_7_492663 "1/1" "1/1" "1|1"
## HiC_scaffold_7_693567 "0|1" "1|1" "1|1"
## HiC_scaffold_7_2379128 "0/0" "0/0" "1/1"
## HiC_scaffold_7_3087721 "1/1" "1/1" "0/1"
## HiC_scaffold_7_3394880 "0/1" "0/0" "0/0"
## HiC_scaffold_7_22247106 "0/1" "1|1" "0/1"
## HiC_scaffold_70_4632611 NA "1|1" "1|1"
## HiC_scaffold_70_14042778 "1/1" NA "0/0"
## HiC_scaffold_71_410844 "0|1" "0/0" "0/0"
## HiC_scaffold_71_1753451 NA "0/0" "0/0"
## HiC_scaffold_71_2283682 "0/1" "0/0" "0/0"
## HiC_scaffold_71_3439685 "0/0" "0/0" "0/0"
## HiC_scaffold_71_17850462 "0/0" "1|1" "0/0"
## HiC_scaffold_71_20588314 "0/1" NA "0/0"
## HiC_scaffold_71_25465351 "1|1" "1|1" "1|1"
## HiC_scaffold_71_25465352 "1|1" "1|1" "1|1"
## HiC_scaffold_71_26356062 "0/1" "0/0" "1/1"
## HiC_scaffold_72_11785096 "0/1" "0/1" "0/0"
## HiC_scaffold_72_17285854 "0/1" "1/1" "1/1"
## HiC_scaffold_72_23704999 "1/1" "0/0" "0/0"
## HiC_scaffold_72_24465318 "0|1" NA "1|1"
## HiC_scaffold_72_30457277 "1/1" "0/0" "1/1"
## HiC_scaffold_72_32068649 "0/0" "0/0" "1/1"
## HiC_scaffold_72_35058295 "0/0" "0/0" "0/0"
## HiC_scaffold_72_36024997 "0/0" "0/0" "0/0"
## HiC_scaffold_72_37135067 "0/0" "0/0" "1|1"
## HiC_scaffold_72_38410141 NA "0/0" "0/1"
## HiC_scaffold_72_38448056 "1|1" "0/0" "1|1"
## HiC_scaffold_72_41412511 "0/1" "0/0" "0/0"
## HiC_scaffold_73_2192629 "0/0" "0/0" "0/0"
## HiC_scaffold_73_2920208 "0/0" "0/1" "0/0"
## HiC_scaffold_73_4522493 "1/1" "1/1" NA
## HiC_scaffold_73_4748625 "1/1" "1|1" "0/1"
## HiC_scaffold_73_5839336 "1/1" "1/1" "1/1"
## HiC_scaffold_73_9338582 "0/0" NA "0/0"
## HiC_scaffold_73_27393859 "0/1" NA "0/0"
## HiC_scaffold_74_14235619 "0/0" "0/0" "1/1"
## HiC_scaffold_74_14515598 "1/1" NA "1/1"
## HiC_scaffold_74_15116121 "0/0" "1|1" "0/0"
## HiC_scaffold_74_17233613 "1/1" "1/1" "1/1"
## HiC_scaffold_74_17725340 "1|1" "0/0" "0|1"
## HiC_scaffold_74_18418135 "1|1" "0/0" "1|1"
## HiC_scaffold_74_18418138 "1|1" "0/0" "1|1"
## HiC_scaffold_74_21254425 NA NA "1/1"
## HiC_scaffold_74_22261065 "0/0" "0/0" "0/0"
## HiC_scaffold_74_47132519 "1|1" NA "0/1"
## HiC_scaffold_74_50979096 NA "0/0" "0/1"
## HiC_scaffold_74_51060549 NA "1/1" "0/1"
## HiC_scaffold_74_53256803 NA "0/0" "1/1"
## HiC_scaffold_74_55464169 "0/1" "0/0" "0/1"
## HiC_scaffold_74_55515512 "1/1" "1/1" "1/1"
## HiC_scaffold_74_55999260 "0/0" "1|1" NA
## HiC_scaffold_74_57404902 "1/1" "1|1" "0/0"
## HiC_scaffold_74_58181927 "0|1" "1|1" "1|1"
## HiC_scaffold_74_58198600 "0/1" NA "0/0"
## HiC_scaffold_74_63060195 "1/1" "0/1" "1/1"
## HiC_scaffold_75_5345466 NA "0/0" "1|1"
## HiC_scaffold_75_5346522 "0/0" "0/1" "0/0"
## HiC_scaffold_75_5346535 "0/0" NA "0/0"
## HiC_scaffold_75_9850973 "1|1" "1/1" "1/1"
## HiC_scaffold_76_27149820 "0/1" "0/1" "0/0"
## HiC_scaffold_76_31582908 "1/1" "0/0" "0/0"
## HiC_scaffold_76_31792815 "1/1" "0/1" "1/1"
## HiC_scaffold_76_35352820 "0/1" "0/0" "0/0"
## HiC_scaffold_76_57782171 "1/1" NA "0/1"
## HiC_scaffold_76_59862401 NA "0/0" "0|1"
## HiC_scaffold_76_61095594 "1|1" "0/0" "1|1"
## HiC_scaffold_76_65496128 "0/0" NA "1/1"
## HiC_scaffold_76_68965847 "0/1" NA "0/1"
## HiC_scaffold_76_68966411 "0/0" "0/0" NA
## HiC_scaffold_76_69823482 "0|1" "0/0" "0/0"
## HiC_scaffold_76_73343841 "1/1" "1/1" "1/1"
## HiC_scaffold_77_3598274 "0/0" "0|1" "1|1"
## HiC_scaffold_77_6982137 "1/1" NA "1/1"
## HiC_scaffold_77_11021994 "1/1" "1/1" "1/1"
## HiC_scaffold_77_13608165 "0/0" "1/1" "0/1"
## HiC_scaffold_77_16888594 "1/1" "0/1" "1/1"
## HiC_scaffold_77_16888623 "0/1" "0/1" "1/1"
## HiC_scaffold_77_16889448 "0|1" "0|1" "0/1"
## HiC_scaffold_77_39784685 "1|1" "0/1" "0/1"
## HiC_scaffold_77_44375866 "0/1" "0/0" "1/1"
## HiC_scaffold_77_45385370 "0/1" "0/1" NA
## HiC_scaffold_78_5719919 "0/1" "0/0" "1/1"
## HiC_scaffold_78_11353297 "0/0" "0/0" "0/1"
## HiC_scaffold_78_27316392 "1/1" NA "0/0"
## HiC_scaffold_78_48124809 "0/0" "0/0" "0/0"
## HiC_scaffold_78_48124826 "0/0" "0/0" "1/1"
## HiC_scaffold_78_48126176 "0/1" "0/0" NA
## HiC_scaffold_78_48279096 "0/0" "0/0" "0/0"
## HiC_scaffold_78_48434558 "0|1" "1|1" "0/0"
## HiC_scaffold_78_49759181 "0/1" "0/1" "1|1"
## HiC_scaffold_78_49759192 "0/0" "0/0" "0/0"
## HiC_scaffold_78_49759215 "1/1" "1/1" "1/1"
## HiC_scaffold_78_51364025 "0/1" "1/1" "1/1"
## HiC_scaffold_78_55395445 NA NA NA
## HiC_scaffold_78_59610866 "0/0" "1/1" "0/1"
## HiC_scaffold_78_62136661 "1/1" "1/1" "0/1"
## HiC_scaffold_79_1643780 "0/1" "0/0" "0|1"
## HiC_scaffold_79_2519178 "1/1" "1|1" "1/1"
## HiC_scaffold_79_2858100 "0|1" "0/0" "0/0"
## HiC_scaffold_79_3922454 "0/1" "0/0" "0/0"
## HiC_scaffold_79_4127878 "0/0" "0/0" "1|1"
## HiC_scaffold_79_4543693 "0/0" "0/0" "1/1"
## HiC_scaffold_79_11507678 "1/1" "0/0" "1/1"
## HiC_scaffold_79_12618812 "0/0" NA "0/0"
## HiC_scaffold_79_14185404 "1|1" "1|1" "1|1"
## HiC_scaffold_79_17120237 "1/1" "0/0" "0/0"
## HiC_scaffold_79_17120254 "1/1" "0/0" "0/0"
## HiC_scaffold_79_35551507 "0/1" "0/0" "0/0"
## HiC_scaffold_79_35551543 "1/1" "0/0" "0/0"
## HiC_scaffold_79_38927423 NA "0/0" "0/0"
## HiC_scaffold_79_42623307 "1|1" "1|1" "0/0"
## HiC_scaffold_79_43179786 "1|1" "0/0" "0|1"
## HiC_scaffold_79_43180099 "1/1" NA "0/1"
## HiC_scaffold_79_43828078 "0/0" NA "0|1"
## HiC_scaffold_79_43872513 "0/0" NA "0/1"
## HiC_scaffold_79_44627215 "1/1" "1/1" "1/1"
## HiC_scaffold_79_50772769 "0/1" "1|1" "0/1"
## HiC_scaffold_79_55468575 "0/0" "0/0" "1/1"
## HiC_scaffold_79_55816114 "1/1" "0/0" "0/1"
## HiC_scaffold_79_59915784 "0/0" "0/0" "0/0"
## HiC_scaffold_79_60165298 "0|1" NA "0|1"
## HiC_scaffold_79_60165305 NA NA "0|1"
## HiC_scaffold_79_69145556 "0/2" "0/0" "0/0"
## HiC_scaffold_79_70208305 "0|1" NA "1|1"
## HiC_scaffold_79_73412292 "1/1" NA "0/0"
## HiC_scaffold_79_73416663 "0/0" NA "1|1"
## HiC_scaffold_79_73416688 "1|1" NA "0/0"
## HiC_scaffold_79_76863102 "0/1" "0/1" "0/0"
## HiC_scaffold_79_81279649 "0/0" "1|1" "0/0"
## HiC_scaffold_79_81499990 "1/1" "0/1" "1/1"
## HiC_scaffold_79_82319836 "1|1" "1|1" "0/0"
## HiC_scaffold_79_82319849 "1|1" "1|1" "1/1"
## HiC_scaffold_79_83163707 NA "0/0" "1/1"
## HiC_scaffold_79_86283512 "1/1" "0/0" "1/1"
## HiC_scaffold_79_87123758 "1|1" "0/0" "1|1"
## HiC_scaffold_79_88362889 "1/1" "0/0" "1/1"
## HiC_scaffold_79_88599431 "0/0" "1/1" "1/1"
## HiC_scaffold_79_89322919 "1/1" NA "0/0"
## HiC_scaffold_79_89331918 "1|1" "0/1" "0/0"
## HiC_scaffold_79_91340958 "0|1" "0/0" NA
## HiC_scaffold_8_13649836 "1/1" NA "0|1"
## HiC_scaffold_8_13650752 "1|1" "1|1" "1|1"
## HiC_scaffold_8_23818233 "1/1" "1/1" "0/1"
## HiC_scaffold_8_24123972 "0/0" "0/0" "0/0"
## HiC_scaffold_8_24230791 "1|1" NA "0/1"
## HiC_scaffold_8_24588423 NA "0/0" "0/0"
## HiC_scaffold_8_25348483 "1/1" "0/0" "1/1"
## HiC_scaffold_8_25421933 "1/1" NA "0/0"
## HiC_scaffold_8_25772942 "0/1" "0/1" "0/0"
## HiC_scaffold_8_26289589 "0/0" "1|1" NA
## HiC_scaffold_8_27602740 NA NA "0/0"
## HiC_scaffold_8_28159063 "0/1" NA "1/1"
## HiC_scaffold_8_30829320 "0/0" "0/0" "1/1"
## HiC_scaffold_8_31044084 "0/0" "1|1" "0/0"
## HiC_scaffold_8_31415507 "0/0" "0/0" "0/0"
## HiC_scaffold_8_32594682 NA NA "0|1"
## HiC_scaffold_80_3617847 "0|1" "0|1" "1/1"
## HiC_scaffold_80_5758183 "1|1" "0/0" "1|1"
## HiC_scaffold_80_6760006 "1|1" "0|1" "0|1"
## HiC_scaffold_80_6760037 "1/1" "0/0" "0/1"
## HiC_scaffold_80_7772622 "0|1" "1/1" "1/1"
## HiC_scaffold_80_7919533 "0/0" "0/0" "0/0"
## HiC_scaffold_80_8110052 NA "1|1" "0/0"
## HiC_scaffold_80_8193366 "0/0" NA "0/1"
## HiC_scaffold_80_8625784 "0/0" "1/1" NA
## HiC_scaffold_80_8912846 "0/0" "1/1" "1/1"
## HiC_scaffold_80_9544102 "0/0" "1|1" "1/1"
## HiC_scaffold_80_10770701 "0/0" NA "0/0"
## HiC_scaffold_80_11590146 "0/0" "1/1" "0/0"
## HiC_scaffold_80_16953653 NA "1/1" "0/1"
## HiC_scaffold_80_18938832 "1|1" "0/0" "0/0"
## HiC_scaffold_80_19015946 "1/1" "1/1" "1/1"
## HiC_scaffold_80_19404001 "0/1" "1/1" "1/1"
## HiC_scaffold_80_25346708 "0/0" NA "0/0"
## HiC_scaffold_80_37479851 "1/1" "0/0" "0/0"
## HiC_scaffold_80_37507516 "0/1" "0/0" "0/0"
## HiC_scaffold_81_1187192 "0/0" "1|1" "0/0"
## HiC_scaffold_81_2689826 "0/0" "1|1" "1|1"
## HiC_scaffold_81_2690751 "0/0" "0/0" "0/1"
## HiC_scaffold_81_6614123 "1/1" "1/1" NA
## HiC_scaffold_81_7836855 "0/0" "0/0" "0/0"
## HiC_scaffold_81_10334868 "0/1" NA "1|1"
## HiC_scaffold_81_10458752 NA "1/1" "1/1"
## HiC_scaffold_81_17515538 "1/1" "1/1" "0/1"
## HiC_scaffold_81_40271282 "1/1" "0/0" "1|1"
## HiC_scaffold_81_40271294 "0/0" NA "0/0"
## HiC_scaffold_81_41096427 NA "1|1" "0|1"
## HiC_scaffold_81_41096444 NA "1|1" "0|1"
## HiC_scaffold_81_43820595 "0/1" "0/0" "0/0"
## HiC_scaffold_81_43820732 "0/0" "0/0" "0/0"
## HiC_scaffold_81_43854278 "0/0" "0/0" "0/1"
## HiC_scaffold_81_44804862 "1/1" "1/1" "1/1"
## HiC_scaffold_81_45063428 "0/0" "0|1" "0|1"
## HiC_scaffold_81_45950590 "0/0" "0/0" "0/0"
## HiC_scaffold_81_46714752 NA NA "0/0"
## HiC_scaffold_81_46714759 NA NA "0/0"
## HiC_scaffold_81_47170397 "1|1" "1|1" "1|1"
## HiC_scaffold_81_47628201 "0/0" "0/0" "0/0"
## HiC_scaffold_81_48105216 "0/0" "0/0" "0/0"
## HiC_scaffold_81_48932070 "0/1" "0/1" "0/1"
## HiC_scaffold_81_54050146 "1/1" "1/1" "1/1"
## HiC_scaffold_82_5672063 "1|1" "1/1" NA
## HiC_scaffold_82_8796823 "0/0" "0/1" "0/1"
## HiC_scaffold_82_13450959 "0/0" "1/1" "0/0"
## HiC_scaffold_82_26144442 "0/0" "0/0" "0/0"
## HiC_scaffold_82_26147011 "0/1" "1|1" "1|1"
## HiC_scaffold_82_28907834 "0/0" "1/1" "1/1"
## HiC_scaffold_82_34413793 "1/1" "0|0" "0/1"
## HiC_scaffold_82_34413800 "0/0" "0|0" "0/0"
## HiC_scaffold_82_36173035 "1/1" "1/1" "1/1"
## HiC_scaffold_82_40539273 "1/1" NA "1/1"
## HiC_scaffold_82_41470256 "1/1" "0/1" "1/1"
## HiC_scaffold_83_23993605 "0/0" "1/1" "1/1"
## HiC_scaffold_83_35035961 "0/1" "0/0" "0/0"
## HiC_scaffold_83_43423618 "0/0" "0/0" "0/0"
## HiC_scaffold_83_46920654 "1/1" "1/1" "1/1"
## HiC_scaffold_83_46934197 "1|1" NA "0/1"
## HiC_scaffold_84_356301 "1|1" NA "0|1"
## HiC_scaffold_84_5761817 NA "0/0" "1/1"
## HiC_scaffold_84_5769022 "0/1" NA "0/0"
## HiC_scaffold_84_6288130 "0/0" "1|1" "0/0"
## HiC_scaffold_84_6288141 "1|1" "1|1" "1|1"
## HiC_scaffold_84_6288147 "0/0" "0/0" "1|1"
## HiC_scaffold_84_7069238 NA "0/0" "0|1"
## HiC_scaffold_84_9131309 "0/0" "1/1" "1/1"
## HiC_scaffold_84_10148442 "0/0" "0/0" NA
## HiC_scaffold_84_14659391 NA NA "1/1"
## HiC_scaffold_84_16302752 "2|2" NA "2|2"
## HiC_scaffold_84_18463244 "1/1" "1/1" NA
## HiC_scaffold_84_22909575 "1|1" "0|1" NA
## HiC_scaffold_84_29275266 "1/1" NA "0/0"
## HiC_scaffold_84_31184610 "1/1" "1/1" "1/1"
## HiC_scaffold_84_33093169 "1|1" NA "0/0"
## HiC_scaffold_84_37675180 "0/0" "0/0" "1/1"
## HiC_scaffold_84_39501814 "0|1" "0/0" "0/0"
## HiC_scaffold_84_50169438 "0|1" "1/1" "0/0"
## HiC_scaffold_84_50169445 "0|1" "0/0" "0/0"
## HiC_scaffold_84_51231025 "0/0" "1/1" "0/0"
## HiC_scaffold_85_9792207 "1|1" "0/0" "0/0"
## HiC_scaffold_85_11784233 "0/0" "1|1" "0|1"
## HiC_scaffold_85_11911022 "1|1" "0/0" "1|1"
## HiC_scaffold_85_11911142 "0/0" NA "0/0"
## HiC_scaffold_85_11913828 NA NA "0/0"
## HiC_scaffold_85_11913831 "0/0" "0/0" "1/1"
## HiC_scaffold_85_12353081 "0/0" "0/1" "0/0"
## HiC_scaffold_85_12414551 "0/0" "0/0" NA
## HiC_scaffold_85_13043967 "0|1" "0|1" "0/0"
## HiC_scaffold_85_13221888 "0/1" "1/1" "1/1"
## HiC_scaffold_85_27008863 "0/1" NA "0/1"
## HiC_scaffold_85_28992264 "0|1" "1|1" "0/0"
## HiC_scaffold_85_28992268 "0|1" "1/1" "0/1"
## HiC_scaffold_85_64310850 "1|1" "1|1" "1|1"
## HiC_scaffold_85_65135112 "0/0" "0/0" "0/0"
## HiC_scaffold_85_65563529 "1/1" "1/1" "0/1"
## HiC_scaffold_86_1949664 "1|1" "0/0" "0/0"
## HiC_scaffold_86_5340423 "1/1" "0/0" "1/1"
## HiC_scaffold_86_5483991 "0/1" "1|1" "1|1"
## HiC_scaffold_86_8928469 "1/1" "1|1" "1/1"
## HiC_scaffold_86_23727924 "1|1" NA "1|1"
## HiC_scaffold_86_24825818 "1|1" "1|1" "1/1"
## HiC_scaffold_86_25333718 "0/1" "1/1" "1/1"
## HiC_scaffold_86_29668168 "0|0" "0/0" "0/0"
## HiC_scaffold_86_30914243 "0/0" NA "1|1"
## HiC_scaffold_86_32040320 "0|1" "0/0" "0/0"
## HiC_scaffold_86_32040329 "0|1" "0/0" "0/0"
## HiC_scaffold_86_32125061 "0/1" "1/1" "0/0"
## HiC_scaffold_86_32144758 "0/0" "1/1" "0|1"
## HiC_scaffold_86_32153692 "1/1" NA "0/0"
## HiC_scaffold_86_32534129 "0/0" "1/1" "1/1"
## HiC_scaffold_86_32605768 "1|1" "0/0" "1|1"
## HiC_scaffold_86_36355399 "1/1" "0/0" "0/0"
## HiC_scaffold_86_36357265 "0/0" "1/1" "1/1"
## HiC_scaffold_87_1253643 "0/1" "0/0" "0/0"
## HiC_scaffold_87_2137958 "0/0" "1/1" "1/1"
## HiC_scaffold_87_3980100 "1/1" "1/1" "0/0"
## HiC_scaffold_87_4395923 "0/0" "0/0" "0/0"
## HiC_scaffold_87_5489328 NA "1|1" "0|1"
## HiC_scaffold_87_6300441 "1/1" "0/0" NA
## HiC_scaffold_87_16306904 "0/1" "0/0" NA
## HiC_scaffold_87_44780945 "0/1" "0/0" "0/0"
## HiC_scaffold_88_5584327 NA "0|1" "0|1"
## HiC_scaffold_88_7104630 "0/1" NA NA
## HiC_scaffold_88_7104631 "1/1" NA NA
## HiC_scaffold_88_7104638 "1/1" NA NA
## HiC_scaffold_88_7104639 "0/1" NA NA
## HiC_scaffold_88_7104640 "1/1" NA NA
## HiC_scaffold_88_7479340 "0/0" "0/0" "0/0"
## HiC_scaffold_88_8773607 "1|1" "0/0" "1|1"
## HiC_scaffold_88_9883678 "1|1" "0/1" "1|1"
## HiC_scaffold_88_10878718 "1/1" "0/0" "1/1"
## HiC_scaffold_88_19365116 "0|1" "1|1" NA
## HiC_scaffold_88_20477349 "0/0" "1/1" "0|1"
## HiC_scaffold_88_20557885 "0/1" "0/0" "0/1"
## HiC_scaffold_89_675045 "0/1" NA "0/0"
## HiC_scaffold_89_2815845 NA "0/0" NA
## HiC_scaffold_89_2843940 "1/1" "0/0" "1/1"
## HiC_scaffold_89_3018830 "0/1" "1/1" "1/1"
## HiC_scaffold_89_13745506 "1/1" NA "0/0"
## HiC_scaffold_89_30006907 "0/1" "1/1" "0/1"
## HiC_scaffold_89_36509388 "1|1" NA "0/1"
## HiC_scaffold_89_38703735 "0/0" "0/0" "1/1"
## HiC_scaffold_89_38764895 "1/1" NA "1/1"
## HiC_scaffold_89_42052609 NA "1/1" NA
## HiC_scaffold_89_42054991 "0/0" "1/1" NA
## HiC_scaffold_89_44306958 "0/0" "1|1" "0/0"
## HiC_scaffold_89_44338206 NA "0/0" "0/0"
## HiC_scaffold_89_45298973 "1/1" "1/1" "0/0"
## HiC_scaffold_9_3529921 "1/1" "1/1" "0/0"
## HiC_scaffold_9_5660454 "0/0" "0/0" "0/0"
## HiC_scaffold_9_5660461 "1|1" "1|1" NA
## HiC_scaffold_9_5854070 "1/1" "1/1" "1/1"
## HiC_scaffold_9_6142415 "0|1" "0/0" "1|1"
## HiC_scaffold_9_6142436 "0|1" "0/0" "0|1"
## HiC_scaffold_9_6143781 "0/1" "0/0" NA
## HiC_scaffold_9_6654825 "0/0" "0/1" "0/0"
## HiC_scaffold_9_7094545 "1|1" "1|1" "1|1"
## HiC_scaffold_9_7100208 "0|1" "0/0" "0/0"
## HiC_scaffold_9_7109988 "0/1" NA "1/1"
## HiC_scaffold_9_7111922 "0/0" "1|1" "0/0"
## HiC_scaffold_9_8235781 "1/1" "0/1" "1/1"
## HiC_scaffold_9_8279558 "1/1" "1/1" "1/1"
## HiC_scaffold_9_15679481 "0/0" "0/0" "0|1"
## HiC_scaffold_9_18082611 "0|1" NA "0/0"
## HiC_scaffold_9_18090830 "0/1" "0/0" "0/1"
## HiC_scaffold_9_30240531 "1/1" "1/1" "1/1"
## HiC_scaffold_90_10418696 "0/0" "0/0" "0/0"
## HiC_scaffold_90_11470224 "0/0" "0/0" "1|1"
## HiC_scaffold_90_13593319 "0/1" NA "1/1"
## HiC_scaffold_90_16260161 NA "0/0" "0/0"
## HiC_scaffold_90_22325499 "0/0" NA "1/1"
## HiC_scaffold_90_23574204 "0/0" "0/0" "0/0"
## HiC_scaffold_90_23609908 "1|1" "0/1" "0/1"
## HiC_scaffold_90_23623078 "1|1" "1|1" "1|1"
## HiC_scaffold_90_23626883 "0/0" "0/0" "1/1"
## HiC_scaffold_90_23812663 "1/1" "0/0" "1/1"
## HiC_scaffold_90_25939283 "0/0" "0/1" NA
## HiC_scaffold_90_25985714 "0/1" NA "0/1"
## HiC_scaffold_90_30751272 "1/1" "0/0" "0/0"
## HiC_scaffold_90_31232025 "1|1" "1|1" "1|1"
## HiC_scaffold_90_31245699 "0/0" "0/0" "0/1"
## HiC_scaffold_90_31527975 "0/0" "0/1" "0/1"
## HiC_scaffold_90_31546172 "0/1" NA "0/0"
## HiC_scaffold_90_38511996 "1|1" "1|1" "0/0"
## HiC_scaffold_90_38511999 "1|1" "1|1" "0|1"
## HiC_scaffold_90_38517279 "0/0" "0/0" "0/0"
## HiC_scaffold_90_40624104 "0/0" "0/0" "0/0"
## HiC_scaffold_91_5644765 "0/1" "1|1" "0/0"
## HiC_scaffold_91_5867214 "0|1" "1|1" NA
## HiC_scaffold_91_5867226 "0|1" "1|1" "0/0"
## HiC_scaffold_91_7704263 "0/0" NA "1|1"
## HiC_scaffold_91_7871360 "1/1" "0/0" "0/1"
## HiC_scaffold_91_8538014 "1/1" "1/1" "1/1"
## HiC_scaffold_91_13230485 "1|1" "0|1" "1|1"
## HiC_scaffold_91_28696118 "0/0" "0/0" "1/1"
## HiC_scaffold_91_28696625 "0/0" "0/0" "1|1"
## HiC_scaffold_91_42177482 "0/0" "1|1" "0/1"
## HiC_scaffold_91_46813640 "0/0" "0|2" "2|2"
## HiC_scaffold_92_23783035 "0/0" "0/1" "0/0"
## HiC_scaffold_92_23783036 "0/0" "0/1" "0/0"
## HiC_scaffold_92_24712793 "0/0" "1/1" "0/0"
## HiC_scaffold_92_28698258 "0|1" "1|1" "0/0"
## HiC_scaffold_92_40691582 "0/0" "0/0" "0/0"
## HiC_scaffold_92_43967712 "0/0" NA "0/0"
## HiC_scaffold_92_47147572 "1|1" "0/0" "0/0"
## HiC_scaffold_92_49042714 "1|1" "1|1" NA
## HiC_scaffold_92_49042715 "1|1" "1|1" NA
## HiC_scaffold_92_53634002 "0/1" NA "1/1"
## HiC_scaffold_92_58211868 "1|1" NA "1|1"
## HiC_scaffold_92_60114155 "1|1" "0/0" "1|1"
## HiC_scaffold_92_63603483 "0/0" "0/0" "0/0"
## HiC_scaffold_92_64797225 "0/0" "0/0" "0/0"
## HiC_scaffold_92_68367476 "0/0" "0/0" "0/0"
## HiC_scaffold_93_1912167 "0/1" "0/0" "0/0"
## HiC_scaffold_93_2485978 NA NA "0/1"
## HiC_scaffold_93_3227638 "0/1" "1/1" "0/0"
## HiC_scaffold_93_3227641 "0|1" "0/0" NA
## HiC_scaffold_93_13971208 "0/0" "1/1" "0/0"
## HiC_scaffold_93_13987080 "1/1" "0/0" "0/0"
## HiC_scaffold_93_21125468 "0/0" "1/1" "0/0"
## HiC_scaffold_93_21845293 "0/1" "0/1" "1/1"
## HiC_scaffold_93_21845310 "0/0" "0|1" "0/0"
## HiC_scaffold_93_21846342 "1|1" "0|1" "1/1"
## HiC_scaffold_93_21846356 "1|1" "0|1" NA
## HiC_scaffold_93_22589723 "1/1" NA "1/1"
## HiC_scaffold_93_22619278 "1/1" "1/1" "1/1"
## HiC_scaffold_93_22631258 "1|1" "0|1" "1|1"
## HiC_scaffold_93_22631266 "1|1" "0|1" "1|1"
## HiC_scaffold_94_3110102 "0/1" "1/1" "0|1"
## HiC_scaffold_94_3205919 "1/1" "1/1" "1/1"
## HiC_scaffold_94_9023846 "0/0" "0/1" "0/1"
## HiC_scaffold_94_11572820 "0/1" "1/1" "1/1"
## HiC_scaffold_94_12368532 "0/0" "0/0" "1/1"
## HiC_scaffold_94_42179418 "1/1" "1/1" NA
## HiC_scaffold_94_42179519 "0/0" "0/0" "1/1"
## HiC_scaffold_94_51646206 "0/0" "0/0" "0/0"
## HiC_scaffold_94_52781289 "0/1" "1/1" "0/0"
## HiC_scaffold_94_53790035 "0/1" "0/0" "0/0"
## HiC_scaffold_94_53792738 "0/1" "0/0" "1/1"
## HiC_scaffold_94_56768905 "0/0" "0/0" "1|1"
## HiC_scaffold_946_81276 "1/1" "1/1" "0/1"
## HiC_scaffold_95_3189690 "1/1" "0/0" "1/1"
## HiC_scaffold_95_4397298 "0/1" "1|1" "0/1"
## HiC_scaffold_95_9469157 "1|1" "0/0" "0/0"
## HiC_scaffold_95_10641411 "1/1" "0/1" "0/0"
## HiC_scaffold_95_10949821 "0/0" "0/0" "0/0"
## HiC_scaffold_95_12993394 "0/0" "0|1" "0|1"
## HiC_scaffold_95_15515793 "0/0" "0/0" "0|1"
## HiC_scaffold_95_15608785 "1|1" "0/0" "0/0"
## HiC_scaffold_95_15609137 "1/1" "0/0" "0/0"
## HiC_scaffold_95_16295316 "1/1" NA "0/1"
## HiC_scaffold_95_22656165 "0/0" "0|1" "0|1"
## HiC_scaffold_95_25885727 "1/1" "0/1" "1|1"
## HiC_scaffold_96_10460019 "0/0" "1/1" "1/1"
## HiC_scaffold_96_27155785 "1/1" "1/1" "0/0"
## HiC_scaffold_96_37939434 "0/1" NA "0/0"
## HiC_scaffold_96_51115048 "0/1" NA "0/0"
## HiC_scaffold_96_51116511 "1/1" "1/1" "1/1"
## HiC_scaffold_96_51915040 "1|1" NA "0/1"
## HiC_scaffold_96_52681287 "0/1" "0/0" "0/0"
## HiC_scaffold_96_53276519 NA "0/1" "0/0"
## HiC_scaffold_97_1736926 "1|1" "0/0" "1|1"
## HiC_scaffold_97_1736994 "1|1" "0|1" "1|1"
## HiC_scaffold_97_3863543 NA "0/0" "1/1"
## HiC_scaffold_97_4200445 "0/0" "0/0" "0/0"
## HiC_scaffold_97_4799162 "0/1" "0/1" "0/0"
## HiC_scaffold_97_5027892 "0/0" "1/1" "0/0"
## HiC_scaffold_97_8007933 "1/1" "0/1" "1/1"
## HiC_scaffold_97_17997210 "0/0" "0|1" "1|1"
## HiC_scaffold_97_18604647 "1/1" "1/1" "1/1"
## HiC_scaffold_97_20239636 "0/1" NA "0/0"
## HiC_scaffold_98_15154096 "0|1" "0/0" "1|1"
## HiC_scaffold_98_22342667 "0/0" "0/0" "1/1"
## HiC_scaffold_98_22634293 NA NA "1|1"
## HiC_scaffold_98_22634294 NA NA "1|1"
## HiC_scaffold_98_22721138 "1/1" "1|1" NA
## HiC_scaffold_98_22869378 "1/1" "1/1" "0/0"
## HiC_scaffold_98_24108405 "0/0" "0|0" "0/0"
## HiC_scaffold_98_27359592 "0|1" "1|1" "1/1"
## HiC_scaffold_98_28549834 "0/1" NA "1/1"
## HiC_scaffold_98_28867520 "1|1" NA "0/0"
## HiC_scaffold_98_28867524 "1|1" NA "0/0"
## HiC_scaffold_98_29431717 "0/1" "1|1" "0|1"
## HiC_scaffold_98_29675109 "0/1" "1/1" "0/1"
## HiC_scaffold_99_1163244 NA NA NA
## HiC_scaffold_99_1451611 "0/1" "1/1" "0/0"
## HiC_scaffold_99_2021961 "0/0" "0/0" "0/0"
## HiC_scaffold_99_5134392 "0/1" "1/1" NA
## HiC_scaffold_99_5239109 "1/1" NA "0/0"
## HiC_scaffold_99_6917738 "1|1" "0/0" "1|1"
## HiC_scaffold_99_11221970 "1|1" "0/0" "0/0"
## HiC_scaffold_99_25982503 "1/1" "0/1" "1/1"
## Tank_9_Crab_4
## HiC_scaffold_1_2523394 "0/0"
## HiC_scaffold_1_2542157 "0/1"
## HiC_scaffold_1_2647806 "1/1"
## HiC_scaffold_1_2970226 "0/0"
## HiC_scaffold_1_3329447 "0/0"
## HiC_scaffold_1_3795100 "1|1"
## HiC_scaffold_10_2221345 "0/0"
## HiC_scaffold_10_2299490 "0/0"
## HiC_scaffold_10_2565301 NA
## HiC_scaffold_10_3864355 NA
## HiC_scaffold_10_4319900 "0/0"
## HiC_scaffold_10_4319907 "0/0"
## HiC_scaffold_10_5404579 "0/0"
## HiC_scaffold_10_5843373 "0/0"
## HiC_scaffold_100_854947 "0/0"
## HiC_scaffold_100_1070817 NA
## HiC_scaffold_100_2002094 "1/2"
## HiC_scaffold_100_2002097 "1/1"
## HiC_scaffold_100_2010331 "0/0"
## HiC_scaffold_100_5186498 "1/1"
## HiC_scaffold_100_5828477 "0/0"
## HiC_scaffold_100_6470419 "0/0"
## HiC_scaffold_100_6739225 "1/1"
## HiC_scaffold_100_6739258 "1|1"
## HiC_scaffold_100_6739264 "1|1"
## HiC_scaffold_100_6907177 "0/0"
## HiC_scaffold_100_8384481 "1|1"
## HiC_scaffold_100_8384495 "1|1"
## HiC_scaffold_100_9451470 "2/2"
## HiC_scaffold_100_10464574 NA
## HiC_scaffold_100_11934792 "0/0"
## HiC_scaffold_100_11980177 "1/1"
## HiC_scaffold_100_18465760 "0/0"
## HiC_scaffold_100_18465762 "0/0"
## HiC_scaffold_100_18466205 "0/0"
## HiC_scaffold_100_31738115 "1/1"
## HiC_scaffold_100_44227362 NA
## HiC_scaffold_101_12808961 "0/0"
## HiC_scaffold_101_13897149 "0/1"
## HiC_scaffold_101_18337279 "1/1"
## HiC_scaffold_101_20800167 "1/1"
## HiC_scaffold_102_2260041 "0/0"
## HiC_scaffold_102_8734519 "0/0"
## HiC_scaffold_102_10233999 "1|1"
## HiC_scaffold_102_11446042 "1/1"
## HiC_scaffold_102_15918694 "0/1"
## HiC_scaffold_102_15935667 "0/0"
## HiC_scaffold_102_17442643 "0/1"
## HiC_scaffold_102_17608969 "0/1"
## HiC_scaffold_102_20180185 "0/0"
## HiC_scaffold_102_24788723 "0/0"
## HiC_scaffold_102_25423729 "1|1"
## HiC_scaffold_102_39755142 "0/1"
## HiC_scaffold_102_52046978 "1/1"
## HiC_scaffold_1027_34152 "1/1"
## HiC_scaffold_103_601715 "0/0"
## HiC_scaffold_103_2891384 "0/1"
## HiC_scaffold_103_8191270 "0/1"
## HiC_scaffold_103_9521272 "1/1"
## HiC_scaffold_103_14768909 "1|1"
## HiC_scaffold_103_19312119 "1|1"
## HiC_scaffold_103_21284866 "0/1"
## HiC_scaffold_103_31428453 NA
## HiC_scaffold_103_42567396 "0/0"
## HiC_scaffold_103_45921571 "0/0"
## HiC_scaffold_103_45921573 "0/0"
## HiC_scaffold_103_49592022 "1|1"
## HiC_scaffold_103_49620132 "1|1"
## HiC_scaffold_103_50440915 "1|1"
## HiC_scaffold_103_51944137 "1/1"
## HiC_scaffold_103_54308582 NA
## HiC_scaffold_103_54424067 "1|1"
## HiC_scaffold_103_56932900 "1/1"
## HiC_scaffold_103_57470264 NA
## HiC_scaffold_104_7771140 "1/1"
## HiC_scaffold_104_9103028 "0/0"
## HiC_scaffold_104_10633168 "1/1"
## HiC_scaffold_104_18917031 "0/0"
## HiC_scaffold_104_20851902 "0/0"
## HiC_scaffold_104_24451803 "0/0"
## HiC_scaffold_104_28597688 "0/0"
## HiC_scaffold_104_40927999 "1/1"
## HiC_scaffold_104_46490074 NA
## HiC_scaffold_104_49759053 "1/1"
## HiC_scaffold_104_57267896 "0/1"
## HiC_scaffold_104_62570010 NA
## HiC_scaffold_11_32804173 "1/1"
## HiC_scaffold_11_34516508 "1/1"
## HiC_scaffold_11_35332996 "1/1"
## HiC_scaffold_11_35904027 "1/1"
## HiC_scaffold_11_41539793 NA
## HiC_scaffold_11_41604080 NA
## HiC_scaffold_11_42855323 NA
## HiC_scaffold_11_45339409 "0/0"
## HiC_scaffold_11_45339410 "0|1"
## HiC_scaffold_11_47544035 "0/0"
## HiC_scaffold_12_7515164 "0/0"
## HiC_scaffold_12_12640100 "0/0"
## HiC_scaffold_12_12826705 "0/0"
## HiC_scaffold_12_14899285 "0/0"
## HiC_scaffold_12_17465672 "0/0"
## HiC_scaffold_12_22770710 NA
## HiC_scaffold_12_32318964 "0/0"
## HiC_scaffold_12_35136373 NA
## HiC_scaffold_12_40687860 "0/0"
## HiC_scaffold_13_2938168 NA
## HiC_scaffold_13_20350974 "1/1"
## HiC_scaffold_13_27759554 NA
## HiC_scaffold_13_28146828 "0|1"
## HiC_scaffold_13_28146830 "0|1"
## HiC_scaffold_13_28925343 "1/1"
## HiC_scaffold_13_31913129 "0/1"
## HiC_scaffold_13_32078924 "1|1"
## HiC_scaffold_13_33864805 "1/1"
## HiC_scaffold_13_34892542 NA
## HiC_scaffold_13_34893103 "1/1"
## HiC_scaffold_13_35762551 "0/0"
## HiC_scaffold_13_35881745 "1/1"
## HiC_scaffold_13_35881749 "0/0"
## HiC_scaffold_14_3843214 "0|1"
## HiC_scaffold_14_25884262 "0/0"
## HiC_scaffold_14_27050415 NA
## HiC_scaffold_14_27118495 "1/1"
## HiC_scaffold_14_27277222 "1/1"
## HiC_scaffold_14_29215814 "1|1"
## HiC_scaffold_15_2460398 "1|1"
## HiC_scaffold_15_2462980 "1/1"
## HiC_scaffold_15_2467289 "1/1"
## HiC_scaffold_15_5669141 "0/1"
## HiC_scaffold_15_13700694 "0/0"
## HiC_scaffold_15_17825275 "0/0"
## HiC_scaffold_15_19938475 "1/1"
## HiC_scaffold_15_23865956 "1|1"
## HiC_scaffold_15_28837774 "0|1"
## HiC_scaffold_15_28837810 "0/1"
## HiC_scaffold_15_28837823 "0/0"
## HiC_scaffold_15_28837835 "0|1"
## HiC_scaffold_15_28837841 "0/0"
## HiC_scaffold_15_28837854 "1/1"
## HiC_scaffold_15_34827832 "0/1"
## HiC_scaffold_15_34893807 NA
## HiC_scaffold_15_35327348 "0/0"
## HiC_scaffold_15_42161112 "0/0"
## HiC_scaffold_15_42164926 "0/0"
## HiC_scaffold_15_42164946 NA
## HiC_scaffold_15_46289572 "1/1"
## HiC_scaffold_15_50591576 "1|1"
## HiC_scaffold_15_50759128 "1/1"
## HiC_scaffold_15_51188336 NA
## HiC_scaffold_15_54726640 "0/0"
## HiC_scaffold_15_54788235 NA
## HiC_scaffold_15_56162375 "1|1"
## HiC_scaffold_15_61091106 "0/0"
## HiC_scaffold_15_61464359 "1/1"
## HiC_scaffold_15_61510386 "1/1"
## HiC_scaffold_15_62309788 "0/0"
## HiC_scaffold_15_62309793 "0/0"
## HiC_scaffold_15_62771254 "0/0"
## HiC_scaffold_15_63493927 "1/1"
## HiC_scaffold_15_64997502 "0/0"
## HiC_scaffold_15_65007865 "1/1"
## HiC_scaffold_15_65007879 "0/0"
## HiC_scaffold_15_66038529 NA
## HiC_scaffold_15_69811281 "1/1"
## HiC_scaffold_16_14205925 "0/0"
## HiC_scaffold_16_30404047 "0/1"
## HiC_scaffold_16_57413288 "1|1"
## HiC_scaffold_16_63687578 "0/0"
## HiC_scaffold_16_74138787 "0/0"
## HiC_scaffold_16_74140106 "0/0"
## HiC_scaffold_16_76276015 "0/0"
## HiC_scaffold_17_11390873 "0/1"
## HiC_scaffold_17_12551128 "1/1"
## HiC_scaffold_17_16615612 "1/1"
## HiC_scaffold_17_18838093 "0/0"
## HiC_scaffold_17_22801072 "0/1"
## HiC_scaffold_17_23788599 "0/0"
## HiC_scaffold_17_29383895 NA
## HiC_scaffold_17_29618771 "1/1"
## HiC_scaffold_17_29976139 "0/1"
## HiC_scaffold_17_31107213 "1/1"
## HiC_scaffold_17_32493792 "0/1"
## HiC_scaffold_17_33732050 NA
## HiC_scaffold_17_33801314 "1|1"
## HiC_scaffold_17_34081889 "1/1"
## HiC_scaffold_18_227565 "0/1"
## HiC_scaffold_18_1213486 "1/1"
## HiC_scaffold_18_1701312 "0/0"
## HiC_scaffold_18_3506437 NA
## HiC_scaffold_18_6304978 "1/1"
## HiC_scaffold_18_6351493 "1/1"
## HiC_scaffold_18_6358009 NA
## HiC_scaffold_18_10770701 NA
## HiC_scaffold_18_13342858 "1/1"
## HiC_scaffold_18_20045832 "2|2"
## HiC_scaffold_18_22682683 NA
## HiC_scaffold_18_26337790 "0/0"
## HiC_scaffold_18_48929148 NA
## HiC_scaffold_18_51490626 "0/0"
## HiC_scaffold_18_53723137 NA
## HiC_scaffold_18_54496637 NA
## HiC_scaffold_18_55294388 "1/1"
## HiC_scaffold_19_279726 "0/0"
## HiC_scaffold_19_6426572 "1/1"
## HiC_scaffold_19_6575887 NA
## HiC_scaffold_19_7755254 "0/0"
## HiC_scaffold_19_9301421 "0|1"
## HiC_scaffold_19_9357388 "1|1"
## HiC_scaffold_19_9778841 "1/1"
## HiC_scaffold_19_10928976 "0/0"
## HiC_scaffold_19_10928980 "0/0"
## HiC_scaffold_19_10928982 "1|1"
## HiC_scaffold_19_11106347 "0/0"
## HiC_scaffold_19_11590139 "1/1"
## HiC_scaffold_19_11665300 "1/1"
## HiC_scaffold_19_14793640 NA
## HiC_scaffold_19_22112743 "0/0"
## HiC_scaffold_19_25473671 "0/0"
## HiC_scaffold_19_25473692 "0/0"
## HiC_scaffold_19_28110829 "1|1"
## HiC_scaffold_19_28465002 NA
## HiC_scaffold_19_28465167 "0/0"
## HiC_scaffold_19_30106869 "1|1"
## HiC_scaffold_19_52538858 NA
## HiC_scaffold_19_52596196 "0/0"
## HiC_scaffold_19_53482993 "1/1"
## HiC_scaffold_19_54312637 "0/1"
## HiC_scaffold_19_59345841 "1|1"
## HiC_scaffold_2_3296144 "1|1"
## HiC_scaffold_2_3418589 "0/0"
## HiC_scaffold_2_3864060 "1/1"
## HiC_scaffold_2_4104755 NA
## HiC_scaffold_2_4104758 NA
## HiC_scaffold_2_8316721 "0/0"
## HiC_scaffold_2_9098999 NA
## HiC_scaffold_2_10457537 "0/0"
## HiC_scaffold_2_19048125 "1/1"
## HiC_scaffold_2_21748201 "1/1"
## HiC_scaffold_2_33187764 "0/0"
## HiC_scaffold_2_33187770 "0/0"
## HiC_scaffold_2_33187959 "1/1"
## HiC_scaffold_2_41603929 "0/1"
## HiC_scaffold_2_52233191 "0/1"
## HiC_scaffold_2_52400748 "1/1"
## HiC_scaffold_2_52403793 "1|1"
## HiC_scaffold_2_52799130 "1/1"
## HiC_scaffold_20_10332897 "0/0"
## HiC_scaffold_20_17198418 "0/0"
## HiC_scaffold_20_17915398 "0/0"
## HiC_scaffold_20_18872955 "0/0"
## HiC_scaffold_20_19055301 "0/0"
## HiC_scaffold_20_19150094 "0/0"
## HiC_scaffold_20_20651022 "1|1"
## HiC_scaffold_20_22651296 "0/0"
## HiC_scaffold_21_2009156 "1|1"
## HiC_scaffold_21_2435648 "1/1"
## HiC_scaffold_21_7164210 "0/0"
## HiC_scaffold_21_9786512 "0/0"
## HiC_scaffold_21_12424922 "1|1"
## HiC_scaffold_21_17966833 "1/1"
## HiC_scaffold_21_19025429 "0/0"
## HiC_scaffold_21_20058318 "1/1"
## HiC_scaffold_21_20562855 "1|1"
## HiC_scaffold_21_20661860 "0/0"
## HiC_scaffold_21_20895395 "0/0"
## HiC_scaffold_21_21158811 "1|1"
## HiC_scaffold_21_22250857 "0/1"
## HiC_scaffold_21_22250866 "0/1"
## HiC_scaffold_21_22257737 "0/1"
## HiC_scaffold_21_22644667 "1|1"
## HiC_scaffold_21_22644673 "1|1"
## HiC_scaffold_21_22666888 "0/1"
## HiC_scaffold_21_23905416 "0/0"
## HiC_scaffold_21_23981651 "0/0"
## HiC_scaffold_21_24287068 "0/0"
## HiC_scaffold_21_30798434 NA
## HiC_scaffold_21_35006232 "1/1"
## HiC_scaffold_21_35779294 "0/0"
## HiC_scaffold_22_124910 NA
## HiC_scaffold_22_751023 "1/1"
## HiC_scaffold_22_1042644 "1|1"
## HiC_scaffold_22_1044708 "1/1"
## HiC_scaffold_22_2174911 "1/1"
## HiC_scaffold_22_3431122 "1|1"
## HiC_scaffold_22_3446787 "1|1"
## HiC_scaffold_22_3451756 "1|1"
## HiC_scaffold_22_3720435 "1/1"
## HiC_scaffold_22_4065466 "0/0"
## HiC_scaffold_22_4739889 "2|2"
## HiC_scaffold_22_4918263 "1|1"
## HiC_scaffold_22_5750008 NA
## HiC_scaffold_22_5769942 "0/0"
## HiC_scaffold_22_28264522 NA
## HiC_scaffold_22_28265115 "0/0"
## HiC_scaffold_22_29205851 "1/1"
## HiC_scaffold_22_29822340 "1/1"
## HiC_scaffold_22_30797357 "0/0"
## HiC_scaffold_22_32042610 NA
## HiC_scaffold_23_11215327 "1/1"
## HiC_scaffold_23_27081333 NA
## HiC_scaffold_23_28672255 "0/0"
## HiC_scaffold_23_29218828 "1/1"
## HiC_scaffold_23_32528768 NA
## HiC_scaffold_23_32669383 "0/0"
## HiC_scaffold_23_33199663 "0/0"
## HiC_scaffold_23_33245843 "1/1"
## HiC_scaffold_23_40824545 "0/0"
## HiC_scaffold_23_41504669 "0/0"
## HiC_scaffold_24_16622654 "0/0"
## HiC_scaffold_24_16622681 "0/0"
## HiC_scaffold_24_19851560 "0/0"
## HiC_scaffold_24_20590563 NA
## HiC_scaffold_24_27745754 "0/1"
## HiC_scaffold_24_28763699 NA
## HiC_scaffold_24_28763703 NA
## HiC_scaffold_25_4135969 NA
## HiC_scaffold_25_4201677 "1/1"
## HiC_scaffold_25_5872831 "0/0"
## HiC_scaffold_25_6879627 "0/0"
## HiC_scaffold_25_8172813 "0/0"
## HiC_scaffold_25_9969507 NA
## HiC_scaffold_25_10691336 "0/0"
## HiC_scaffold_25_21286462 "0/0"
## HiC_scaffold_26_4086662 "0/0"
## HiC_scaffold_26_7539671 "0/1"
## HiC_scaffold_26_8348511 "1/1"
## HiC_scaffold_26_9043748 "1|1"
## HiC_scaffold_26_9045655 "0|1"
## HiC_scaffold_26_11253181 "0/1"
## HiC_scaffold_26_17828344 "1/1"
## HiC_scaffold_26_17932520 "1/1"
## HiC_scaffold_26_17941459 "0/0"
## HiC_scaffold_26_17960877 "1/1"
## HiC_scaffold_26_18284041 NA
## HiC_scaffold_26_18288701 "1|1"
## HiC_scaffold_26_18294422 "0/0"
## HiC_scaffold_26_21307365 "1/1"
## HiC_scaffold_26_22159924 "1/1"
## HiC_scaffold_26_22161535 NA
## HiC_scaffold_26_24794176 "0/0"
## HiC_scaffold_26_28538113 "1|1"
## HiC_scaffold_26_29031357 NA
## HiC_scaffold_26_29163462 "0/0"
## HiC_scaffold_26_42631018 "0/0"
## HiC_scaffold_26_42634814 "1/1"
## HiC_scaffold_26_43483190 "1/1"
## HiC_scaffold_26_49955889 "0/0"
## HiC_scaffold_26_58342510 NA
## HiC_scaffold_27_1496120 "0/0"
## HiC_scaffold_27_1947057 "0/0"
## HiC_scaffold_27_2359058 "1/1"
## HiC_scaffold_27_2699645 NA
## HiC_scaffold_27_4425475 NA
## HiC_scaffold_27_7539469 NA
## HiC_scaffold_27_7777122 "0/0"
## HiC_scaffold_27_16657070 "0/0"
## HiC_scaffold_27_24539255 NA
## HiC_scaffold_27_34642359 "1|1"
## HiC_scaffold_27_34647277 "0/0"
## HiC_scaffold_27_35380535 NA
## HiC_scaffold_27_35383230 "0/0"
## HiC_scaffold_28_21261390 "0|1"
## HiC_scaffold_28_24490442 "0/0"
## HiC_scaffold_28_25601927 "0/1"
## HiC_scaffold_28_31793968 "0/0"
## HiC_scaffold_28_32126687 NA
## HiC_scaffold_28_34779518 "1/1"
## HiC_scaffold_28_36042491 NA
## HiC_scaffold_28_36692361 "0/0"
## HiC_scaffold_28_38672993 "0|1"
## HiC_scaffold_28_39640526 "0/0"
## HiC_scaffold_28_40169242 "0/0"
## HiC_scaffold_28_41059640 "1|1"
## HiC_scaffold_28_42514830 "0/0"
## HiC_scaffold_28_42601570 "0/0"
## HiC_scaffold_28_42601585 "0/0"
## HiC_scaffold_28_43018803 "1/1"
## HiC_scaffold_28_43036165 "1/1"
## HiC_scaffold_29_344317 NA
## HiC_scaffold_29_3811176 "1|1"
## HiC_scaffold_29_6073993 "0/0"
## HiC_scaffold_29_6415222 NA
## HiC_scaffold_29_8224424 "0/0"
## HiC_scaffold_29_11153624 "0/0"
## HiC_scaffold_29_11153712 "0/0"
## HiC_scaffold_29_11167966 NA
## HiC_scaffold_29_11491468 "0/0"
## HiC_scaffold_29_12103558 "1/1"
## HiC_scaffold_29_14279322 "1/1"
## HiC_scaffold_29_14913907 "0/0"
## HiC_scaffold_29_16378276 "1/1"
## HiC_scaffold_29_20635937 "1/1"
## HiC_scaffold_29_20636787 "0/0"
## HiC_scaffold_29_22560215 "1/1"
## HiC_scaffold_29_22561144 NA
## HiC_scaffold_29_24017849 "1/1"
## HiC_scaffold_29_31603590 "1/1"
## HiC_scaffold_3_21670751 "0/0"
## HiC_scaffold_3_24747014 "0/0"
## HiC_scaffold_3_27861792 "1/1"
## HiC_scaffold_3_28057869 "0/0"
## HiC_scaffold_3_28441436 "0/0"
## HiC_scaffold_3_28694380 "1|1"
## HiC_scaffold_3_31361023 "0/0"
## HiC_scaffold_3_31960572 "1|1"
## HiC_scaffold_3_32157169 "1/1"
## HiC_scaffold_3_32159152 NA
## HiC_scaffold_3_34124237 "1/1"
## HiC_scaffold_30_14199802 NA
## HiC_scaffold_30_16052331 "1/1"
## HiC_scaffold_30_19914075 "1/1"
## HiC_scaffold_30_20688783 "0/0"
## HiC_scaffold_30_21446076 "0/0"
## HiC_scaffold_30_21598563 "0/0"
## HiC_scaffold_30_22155728 "0/0"
## HiC_scaffold_31_687411 "0/0"
## HiC_scaffold_31_3224722 "0|1"
## HiC_scaffold_31_3574854 NA
## HiC_scaffold_31_5899551 "0/0"
## HiC_scaffold_31_5911491 "1|1"
## HiC_scaffold_31_6297680 NA
## HiC_scaffold_31_12394016 NA
## HiC_scaffold_31_12394040 "0/0"
## HiC_scaffold_31_18612650 NA
## HiC_scaffold_32_4446859 "1/1"
## HiC_scaffold_32_5274796 "0/1"
## HiC_scaffold_32_5275108 "0/1"
## HiC_scaffold_32_5282358 "0/1"
## HiC_scaffold_32_5450203 "1|1"
## HiC_scaffold_32_44200178 "0/0"
## HiC_scaffold_33_638523 "0/0"
## HiC_scaffold_33_44489563 "1/1"
## HiC_scaffold_33_44489988 "0/0"
## HiC_scaffold_33_47080180 "0/0"
## HiC_scaffold_33_47495907 "0/0"
## HiC_scaffold_33_51865876 NA
## HiC_scaffold_34_1096982 "1/1"
## HiC_scaffold_34_6091943 "0/0"
## HiC_scaffold_34_6100160 "1|1"
## HiC_scaffold_34_24368584 "1/1"
## HiC_scaffold_35_3233120 "1/1"
## HiC_scaffold_35_3253574 "0/1"
## HiC_scaffold_35_5512296 "1/1"
## HiC_scaffold_35_15114788 NA
## HiC_scaffold_35_21214090 "1/1"
## HiC_scaffold_35_21462564 "0/0"
## HiC_scaffold_35_22746783 NA
## HiC_scaffold_35_22747085 "0/0"
## HiC_scaffold_35_23059580 "0/1"
## HiC_scaffold_35_23158882 "0/0"
## HiC_scaffold_35_23261143 NA
## HiC_scaffold_35_24403602 "0/0"
## HiC_scaffold_35_24403620 "1/1"
## HiC_scaffold_35_24993986 NA
## HiC_scaffold_35_24993998 NA
## HiC_scaffold_36_1538038 "0/1"
## HiC_scaffold_36_2464728 "0/1"
## HiC_scaffold_36_5489050 NA
## HiC_scaffold_36_9673981 "0/0"
## HiC_scaffold_36_9674127 "1/1"
## HiC_scaffold_36_9674756 "1/1"
## HiC_scaffold_36_9676329 "1/1"
## HiC_scaffold_36_12304516 "1/1"
## HiC_scaffold_36_12515555 "1|1"
## HiC_scaffold_36_13092647 "0/0"
## HiC_scaffold_36_13766994 "1/1"
## HiC_scaffold_36_14567741 "1/1"
## HiC_scaffold_36_15530578 "1|1"
## HiC_scaffold_37_679894 NA
## HiC_scaffold_37_916693 NA
## HiC_scaffold_37_928146 "0/0"
## HiC_scaffold_37_1256768 "0/0"
## HiC_scaffold_37_1270034 NA
## HiC_scaffold_37_1770997 "0/0"
## HiC_scaffold_37_1798298 "0/0"
## HiC_scaffold_37_2010342 "1|1"
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## HiC_scaffold_38_5879849 "1/1"
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## HiC_scaffold_38_12959698 "1|1"
## HiC_scaffold_38_13087368 "1/1"
## HiC_scaffold_38_13480648 NA
## HiC_scaffold_38_13965243 "1/1"
## HiC_scaffold_38_14089955 "0/0"
## HiC_scaffold_38_14408072 NA
## HiC_scaffold_38_14931216 "1/1"
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## HiC_scaffold_38_14978367 "0/0"
## HiC_scaffold_38_15292863 "1/1"
## HiC_scaffold_38_15306135 "1|1"
## HiC_scaffold_38_16077506 NA
## HiC_scaffold_38_16138965 "1/1"
## HiC_scaffold_38_16226040 "1/1"
## HiC_scaffold_39_1393769 NA
## HiC_scaffold_39_2014970 "0/1"
## HiC_scaffold_39_2014982 "0|1"
## HiC_scaffold_39_2014985 "0|1"
## HiC_scaffold_39_2426443 NA
## HiC_scaffold_39_2485330 "1/1"
## HiC_scaffold_39_3350506 "0/0"
## HiC_scaffold_39_5897388 "0/0"
## HiC_scaffold_39_17631133 "0/0"
## HiC_scaffold_4_12107187 "1/1"
## HiC_scaffold_4_18241670 "1|1"
## HiC_scaffold_4_18241723 "1/1"
## HiC_scaffold_4_22418566 "1|1"
## HiC_scaffold_4_27899990 "1|1"
## HiC_scaffold_4_35575118 "0/0"
## HiC_scaffold_4_38000967 "1/1"
## HiC_scaffold_4_50654021 "1|1"
## HiC_scaffold_40_2243415 "0/1"
## HiC_scaffold_40_3000572 "0/0"
## HiC_scaffold_40_3014177 "1|1"
## HiC_scaffold_40_3027900 "1/1"
## HiC_scaffold_40_3143834 "1/1"
## HiC_scaffold_40_3843942 NA
## HiC_scaffold_40_3847620 "0/0"
## HiC_scaffold_40_3891007 NA
## HiC_scaffold_40_3920667 "2/2"
## HiC_scaffold_40_4177963 "0/0"
## HiC_scaffold_40_4819107 "0/0"
## HiC_scaffold_40_4819834 NA
## HiC_scaffold_40_5788271 NA
## HiC_scaffold_40_5965269 "1|1"
## HiC_scaffold_40_6204154 "0/0"
## HiC_scaffold_40_8387917 "0|1"
## HiC_scaffold_41_3235384 "0/0"
## HiC_scaffold_41_3583000 NA
## HiC_scaffold_41_5334504 NA
## HiC_scaffold_41_5387631 "0/0"
## HiC_scaffold_41_6423426 "0/0"
## HiC_scaffold_41_14359947 "0/0"
## HiC_scaffold_41_24007593 "0/0"
## HiC_scaffold_41_26225447 "1/1"
## HiC_scaffold_41_28626484 "0/0"
## HiC_scaffold_41_28660620 "1|1"
## HiC_scaffold_41_31007688 NA
## HiC_scaffold_42_1131084 "1/1"
## HiC_scaffold_42_1818523 "0/0"
## HiC_scaffold_42_2165002 "0/0"
## HiC_scaffold_42_2711332 "0/0"
## HiC_scaffold_42_6142699 NA
## HiC_scaffold_42_6744976 "0/0"
## HiC_scaffold_42_8066919 "0/0"
## HiC_scaffold_42_8068292 "1/1"
## HiC_scaffold_42_12487888 "0|1"
## HiC_scaffold_42_41366687 "1/1"
## HiC_scaffold_42_47313337 NA
## HiC_scaffold_42_47313338 NA
## HiC_scaffold_42_50784971 NA
## HiC_scaffold_42_50784977 NA
## HiC_scaffold_42_50784981 NA
## HiC_scaffold_42_51916989 "1/1"
## HiC_scaffold_43_3842003 NA
## HiC_scaffold_43_14140861 "1|1"
## HiC_scaffold_43_15053605 "1|1"
## HiC_scaffold_43_17289945 "0/0"
## HiC_scaffold_43_29967704 "0/0"
## HiC_scaffold_43_35745831 "1|1"
## HiC_scaffold_43_37627949 "0|1"
## HiC_scaffold_43_37628126 "1/1"
## HiC_scaffold_43_44017118 "1/1"
## HiC_scaffold_43_55124138 NA
## HiC_scaffold_43_60107326 NA
## HiC_scaffold_43_61359386 NA
## HiC_scaffold_43_61702593 "0/0"
## HiC_scaffold_43_61702606 "0/0"
## HiC_scaffold_43_61702721 "0/0"
## HiC_scaffold_43_61702738 "0/0"
## HiC_scaffold_43_62511703 "0/0"
## HiC_scaffold_43_64069457 "0/0"
## HiC_scaffold_43_64577269 NA
## HiC_scaffold_44_1920144 "0/0"
## HiC_scaffold_44_2148035 "0/0"
## HiC_scaffold_44_2568167 "1/1"
## HiC_scaffold_45_4180070 "0/0"
## HiC_scaffold_45_4797754 "2/2"
## HiC_scaffold_45_5911123 "0/0"
## HiC_scaffold_45_6958990 NA
## HiC_scaffold_45_8516216 "1|1"
## HiC_scaffold_45_10191213 "0/0"
## HiC_scaffold_45_12005885 "1/1"
## HiC_scaffold_45_12006766 NA
## HiC_scaffold_45_24736172 NA
## HiC_scaffold_45_24739830 "0/0"
## HiC_scaffold_46_9691567 "1|1"
## HiC_scaffold_46_17380257 "0/0"
## HiC_scaffold_46_18387147 "0/1"
## HiC_scaffold_46_37092355 "0|1"
## HiC_scaffold_46_39183624 NA
## HiC_scaffold_46_39390547 "0/1"
## HiC_scaffold_46_42964941 NA
## HiC_scaffold_46_42986653 "1/1"
## HiC_scaffold_46_52074364 "0/0"
## HiC_scaffold_46_54255667 "0/1"
## HiC_scaffold_47_3750532 "1/1"
## HiC_scaffold_47_3751345 NA
## HiC_scaffold_47_15400639 "1|1"
## HiC_scaffold_47_24072414 "0/1"
## HiC_scaffold_47_25273825 "0/0"
## HiC_scaffold_48_8752752 "0/0"
## HiC_scaffold_48_10765920 NA
## HiC_scaffold_48_16077918 "0/0"
## HiC_scaffold_48_16077940 "0/0"
## HiC_scaffold_48_16411609 "1/1"
## HiC_scaffold_48_19972580 "1/1"
## HiC_scaffold_48_23493079 "0/0"
## HiC_scaffold_48_23597210 NA
## HiC_scaffold_48_24478493 NA
## HiC_scaffold_48_24881148 "1/1"
## HiC_scaffold_48_25865723 "0/0"
## HiC_scaffold_48_25984068 "1|1"
## HiC_scaffold_48_25989079 "1/1"
## HiC_scaffold_48_30601375 "1|1"
## HiC_scaffold_48_31662115 "1/1"
## HiC_scaffold_48_41971562 "0/0"
## HiC_scaffold_49_3392801 "0/0"
## HiC_scaffold_49_6101692 "1/1"
## HiC_scaffold_49_7996315 "0/0"
## HiC_scaffold_49_9470474 "0/1"
## HiC_scaffold_49_9886007 NA
## HiC_scaffold_49_12592113 "1/1"
## HiC_scaffold_49_12741575 "1/1"
## HiC_scaffold_49_15135019 "1/1"
## HiC_scaffold_49_25906219 NA
## HiC_scaffold_49_26614199 "0/0"
## HiC_scaffold_49_26655554 "0|1"
## HiC_scaffold_49_37568341 "1|1"
## HiC_scaffold_49_37568353 "1|1"
## HiC_scaffold_49_40002255 NA
## HiC_scaffold_49_40003229 "1|1"
## HiC_scaffold_49_42966376 "0/0"
## HiC_scaffold_5_801252 "1/1"
## HiC_scaffold_5_1446603 "0/0"
## HiC_scaffold_5_1446611 "0/0"
## HiC_scaffold_5_1530759 NA
## HiC_scaffold_5_1539275 "0/0"
## HiC_scaffold_5_1789576 "0/0"
## HiC_scaffold_5_1808197 "0/0"
## HiC_scaffold_5_1808204 NA
## HiC_scaffold_5_1943895 NA
## HiC_scaffold_5_1944469 "1/1"
## HiC_scaffold_5_2857283 "1/1"
## HiC_scaffold_5_4061378 "1/1"
## HiC_scaffold_5_4340647 "0/0"
## HiC_scaffold_5_4435246 "1/1"
## HiC_scaffold_5_8868783 NA
## HiC_scaffold_50_4315969 "0/0"
## HiC_scaffold_50_11652296 "1/1"
## HiC_scaffold_50_11657309 "1/1"
## HiC_scaffold_50_15521027 NA
## HiC_scaffold_50_21050962 "0/0"
## HiC_scaffold_50_23686202 NA
## HiC_scaffold_50_27393462 NA
## HiC_scaffold_50_42586883 "0/0"
## HiC_scaffold_50_45087211 "0/0"
## HiC_scaffold_50_49796550 "1/1"
## HiC_scaffold_50_54383367 "0/0"
## HiC_scaffold_50_63318678 "1/1"
## HiC_scaffold_51_3521000 "0/0"
## HiC_scaffold_51_4681905 "0/0"
## HiC_scaffold_51_6305599 "0/0"
## HiC_scaffold_51_8530818 "0/1"
## HiC_scaffold_51_11653312 "1/1"
## HiC_scaffold_51_13138547 "1/1"
## HiC_scaffold_51_14457091 NA
## HiC_scaffold_51_15512668 "0/0"
## HiC_scaffold_51_17816346 "1/1"
## HiC_scaffold_51_19997934 "1|1"
## HiC_scaffold_51_19997936 "1|1"
## HiC_scaffold_51_20870773 "0/0"
## HiC_scaffold_51_26660104 "0/0"
## HiC_scaffold_51_40727521 "0/0"
## HiC_scaffold_51_40892841 "1/1"
## HiC_scaffold_51_41717519 "1/1"
## HiC_scaffold_51_42547638 "1/1"
## HiC_scaffold_52_3335804 "1/1"
## HiC_scaffold_52_4149130 "0/0"
## HiC_scaffold_52_6893679 "1/1"
## HiC_scaffold_52_13155416 "1/1"
## HiC_scaffold_52_13155437 NA
## HiC_scaffold_52_13155442 NA
## HiC_scaffold_52_14885688 "0/0"
## HiC_scaffold_52_14895078 NA
## HiC_scaffold_52_15141791 "0/0"
## HiC_scaffold_52_15743051 NA
## HiC_scaffold_52_15760201 "0/0"
## HiC_scaffold_52_15834589 NA
## HiC_scaffold_52_15841769 "0/0"
## HiC_scaffold_52_15862421 "1|1"
## HiC_scaffold_52_15970970 "0/0"
## HiC_scaffold_52_16275237 "0/1"
## HiC_scaffold_52_16275240 "0|1"
## HiC_scaffold_52_16275290 "1|1"
## HiC_scaffold_52_16524164 "0/1"
## HiC_scaffold_52_16524572 "1/1"
## HiC_scaffold_52_16525647 "0/0"
## HiC_scaffold_52_16637047 NA
## HiC_scaffold_52_17202127 "0/0"
## HiC_scaffold_52_17207724 "1/1"
## HiC_scaffold_52_17508820 "1|1"
## HiC_scaffold_52_17547593 "0/0"
## HiC_scaffold_52_17551239 "0/1"
## HiC_scaffold_52_17560696 NA
## HiC_scaffold_52_17560699 NA
## HiC_scaffold_52_17741250 "1/1"
## HiC_scaffold_52_17742260 "1|1"
## HiC_scaffold_52_18340578 NA
## HiC_scaffold_52_18415911 "1/1"
## HiC_scaffold_52_22189517 "0/0"
## HiC_scaffold_52_22526592 NA
## HiC_scaffold_52_26393471 "1/1"
## HiC_scaffold_52_26799380 "0/0"
## HiC_scaffold_52_31871931 "1/1"
## HiC_scaffold_52_31874283 "1/1"
## HiC_scaffold_52_31874287 "0/0"
## HiC_scaffold_52_32161053 "1|1"
## HiC_scaffold_52_33165557 "1/1"
## HiC_scaffold_52_33897620 "0/0"
## HiC_scaffold_52_34763156 "0/0"
## HiC_scaffold_52_34763171 "0/1"
## HiC_scaffold_52_35174755 "0/0"
## HiC_scaffold_52_35608453 "0/0"
## HiC_scaffold_52_35608470 "0/0"
## HiC_scaffold_52_39464728 "0/0"
## HiC_scaffold_52_42141354 "0/0"
## HiC_scaffold_52_44675725 "0/1"
## HiC_scaffold_52_49935920 NA
## HiC_scaffold_53_21789524 "0/0"
## HiC_scaffold_53_25168042 "0/0"
## HiC_scaffold_53_26398989 "1|1"
## HiC_scaffold_53_26398992 "1|1"
## HiC_scaffold_53_26398994 "1|1"
## HiC_scaffold_53_26549665 "0/0"
## HiC_scaffold_53_29227676 "0|1"
## HiC_scaffold_53_31250349 "1/1"
## HiC_scaffold_54_530581 "1|1"
## HiC_scaffold_54_794095 "1|1"
## HiC_scaffold_54_1171109 "0|1"
## HiC_scaffold_54_1378956 "0/0"
## HiC_scaffold_54_1380539 "1/1"
## HiC_scaffold_54_3045015 "1/1"
## HiC_scaffold_54_3185987 "0/0"
## HiC_scaffold_54_4401098 NA
## HiC_scaffold_54_5595903 "0/0"
## HiC_scaffold_54_5595921 "0/0"
## HiC_scaffold_54_5595928 "1|1"
## HiC_scaffold_54_5595949 "0/0"
## HiC_scaffold_54_6649662 "1/1"
## HiC_scaffold_54_8036734 NA
## HiC_scaffold_54_9206614 NA
## HiC_scaffold_54_35913192 "0/0"
## HiC_scaffold_54_35913282 "1|1"
## HiC_scaffold_54_35913283 "1|1"
## HiC_scaffold_55_1260491 "0/0"
## HiC_scaffold_55_3254027 "1/1"
## HiC_scaffold_55_3281985 "1|1"
## HiC_scaffold_55_5409544 "0/1"
## HiC_scaffold_55_5411094 "1|1"
## HiC_scaffold_55_5411115 "1/1"
## HiC_scaffold_55_18121799 "0/0"
## HiC_scaffold_55_19605809 "0/1"
## HiC_scaffold_55_19605817 "1|1"
## HiC_scaffold_55_19605821 "1|1"
## HiC_scaffold_55_20195204 "0/0"
## HiC_scaffold_55_20886967 "0/0"
## HiC_scaffold_55_23222937 NA
## HiC_scaffold_55_23626331 "1/1"
## HiC_scaffold_55_24539590 "0/0"
## HiC_scaffold_55_24585939 "0/0"
## HiC_scaffold_55_34174151 "0/1"
## HiC_scaffold_56_17874332 "0/0"
## HiC_scaffold_56_18635259 NA
## HiC_scaffold_56_23654344 "0/0"
## HiC_scaffold_56_35850533 "0/1"
## HiC_scaffold_56_35850539 "1/1"
## HiC_scaffold_56_40813556 "1/1"
## HiC_scaffold_56_53211633 "1/1"
## HiC_scaffold_56_60070829 "1/1"
## HiC_scaffold_56_73286017 NA
## HiC_scaffold_56_73829442 "0/0"
## HiC_scaffold_56_73829443 "0/0"
## HiC_scaffold_56_76060304 "0/0"
## HiC_scaffold_57_25306408 "1/1"
## HiC_scaffold_57_29222385 NA
## HiC_scaffold_57_29592432 "0/1"
## HiC_scaffold_57_31472698 NA
## HiC_scaffold_57_32371742 "0/1"
## HiC_scaffold_57_36495072 "0/0"
## HiC_scaffold_57_37286264 NA
## HiC_scaffold_57_38537415 "0/0"
## HiC_scaffold_57_45438854 "0/2"
## HiC_scaffold_57_52856874 NA
## HiC_scaffold_57_53575355 "1/1"
## HiC_scaffold_57_55856783 "1/1"
## HiC_scaffold_58_1362614 "1/1"
## HiC_scaffold_58_1432845 "1/1"
## HiC_scaffold_58_1541720 "0/0"
## HiC_scaffold_58_2777120 "0/0"
## HiC_scaffold_58_2973169 "1/1"
## HiC_scaffold_58_3243043 "0/1"
## HiC_scaffold_58_4035282 "0/1"
## HiC_scaffold_58_5442157 NA
## HiC_scaffold_58_8004631 NA
## HiC_scaffold_58_8058998 "0/0"
## HiC_scaffold_58_8932837 "0/0"
## HiC_scaffold_58_14814944 "0/0"
## HiC_scaffold_58_15639988 "0/1"
## HiC_scaffold_58_15707198 "1/1"
## HiC_scaffold_58_15707258 NA
## HiC_scaffold_58_15710623 "0/0"
## HiC_scaffold_58_19155063 "0/0"
## HiC_scaffold_58_20224050 "1/1"
## HiC_scaffold_58_38475355 "1/1"
## HiC_scaffold_59_3979055 "0/0"
## HiC_scaffold_59_5071810 "0|1"
## HiC_scaffold_59_5349936 "0/1"
## HiC_scaffold_59_5350114 "0/0"
## HiC_scaffold_59_7738302 "0/0"
## HiC_scaffold_59_7738351 "0/0"
## HiC_scaffold_59_7958561 "0/0"
## HiC_scaffold_59_9273798 "0/0"
## HiC_scaffold_59_50928099 "1/1"
## HiC_scaffold_59_52960060 "0/0"
## HiC_scaffold_6_10569023 "0/0"
## HiC_scaffold_6_10711445 "1/1"
## HiC_scaffold_6_13209200 "0/1"
## HiC_scaffold_6_13213107 "0/1"
## HiC_scaffold_6_13311684 "0/0"
## HiC_scaffold_6_15670783 NA
## HiC_scaffold_6_19111232 "0/0"
## HiC_scaffold_6_32805498 "1/1"
## HiC_scaffold_6_38793174 "1|1"
## HiC_scaffold_6_41092101 "0/0"
## HiC_scaffold_6_41342933 "0|1"
## HiC_scaffold_6_47594508 "0/0"
## HiC_scaffold_60_70878 NA
## HiC_scaffold_60_99549 "1|1"
## HiC_scaffold_60_201823 "0/0"
## HiC_scaffold_60_712969 NA
## HiC_scaffold_60_744783 "1/1"
## HiC_scaffold_60_744788 "0/1"
## HiC_scaffold_60_22142128 "0/0"
## HiC_scaffold_60_27599770 "1/1"
## HiC_scaffold_60_30608878 "0/0"
## HiC_scaffold_60_32657324 "0/1"
## HiC_scaffold_60_32672580 NA
## HiC_scaffold_60_38856893 "1/1"
## HiC_scaffold_60_39028335 "1/1"
## HiC_scaffold_60_40296869 "0/0"
## HiC_scaffold_60_42775723 "0/0"
## HiC_scaffold_60_44687906 NA
## HiC_scaffold_60_44804601 "1/1"
## HiC_scaffold_60_53696867 NA
## HiC_scaffold_60_53696868 NA
## HiC_scaffold_60_60651515 "1|1"
## HiC_scaffold_60_70678462 "1/1"
## HiC_scaffold_61_2205328 "1|1"
## HiC_scaffold_61_2491706 "0|1"
## HiC_scaffold_61_4009916 "1|1"
## HiC_scaffold_61_4062917 "0/0"
## HiC_scaffold_61_4122763 "1|1"
## HiC_scaffold_61_4216461 "0/0"
## HiC_scaffold_61_4325053 "0/1"
## HiC_scaffold_61_9004838 NA
## HiC_scaffold_61_14635083 NA
## HiC_scaffold_62_1128608 "1/1"
## HiC_scaffold_62_11335200 "0/0"
## HiC_scaffold_62_18828476 "1/1"
## HiC_scaffold_62_21548870 "1|1"
## HiC_scaffold_62_23103274 "0/0"
## HiC_scaffold_62_25793456 "1/1"
## HiC_scaffold_62_25887474 "0/0"
## HiC_scaffold_62_28516096 NA
## HiC_scaffold_62_28516099 NA
## HiC_scaffold_62_28818725 "0/0"
## HiC_scaffold_62_28818729 "1/1"
## HiC_scaffold_62_45207353 "1/1"
## HiC_scaffold_63_3092269 "1/1"
## HiC_scaffold_63_3977940 NA
## HiC_scaffold_63_4084937 "0/0"
## HiC_scaffold_63_4196326 NA
## HiC_scaffold_63_6262453 "0/0"
## HiC_scaffold_63_6350204 NA
## HiC_scaffold_63_6458794 "0/0"
## HiC_scaffold_64_9162978 "0/0"
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## HiC_scaffold_6951_1134482 NA
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## HiC_scaffold_71_25465351 NA
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## HiC_scaffold_72_11785096 "0/1"
## HiC_scaffold_72_17285854 "0/1"
## HiC_scaffold_72_23704999 NA
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## HiC_scaffold_72_30457277 "0/1"
## HiC_scaffold_72_32068649 "1/1"
## HiC_scaffold_72_35058295 NA
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## HiC_scaffold_72_38410141 "1/1"
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## HiC_scaffold_73_2192629 "1|1"
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## HiC_scaffold_73_4522493 "1|1"
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## HiC_scaffold_74_17233613 NA
## HiC_scaffold_74_17725340 "0|1"
## HiC_scaffold_74_18418135 NA
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## HiC_scaffold_74_21254425 "1/1"
## HiC_scaffold_74_22261065 "1/1"
## HiC_scaffold_74_47132519 "0/0"
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## HiC_scaffold_74_53256803 "1/1"
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## HiC_scaffold_75_5346522 "0/0"
## HiC_scaffold_75_5346535 "0/0"
## HiC_scaffold_75_9850973 NA
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## HiC_scaffold_76_35352820 "0/0"
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## HiC_scaffold_76_68965847 "0/0"
## HiC_scaffold_76_68966411 "0/0"
## HiC_scaffold_76_69823482 NA
## HiC_scaffold_76_73343841 "0/1"
## HiC_scaffold_77_3598274 "0/0"
## HiC_scaffold_77_6982137 "0/0"
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## HiC_scaffold_77_13608165 "0/0"
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## HiC_scaffold_77_39784685 "0/1"
## HiC_scaffold_77_44375866 "1/1"
## HiC_scaffold_77_45385370 "1/1"
## HiC_scaffold_78_5719919 "0/1"
## HiC_scaffold_78_11353297 "0/0"
## HiC_scaffold_78_27316392 "0/0"
## HiC_scaffold_78_48124809 "0/0"
## HiC_scaffold_78_48124826 NA
## HiC_scaffold_78_48126176 "0/0"
## HiC_scaffold_78_48279096 "0/1"
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## HiC_scaffold_78_49759181 "0/0"
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## HiC_scaffold_78_49759215 "0/1"
## HiC_scaffold_78_51364025 "1/1"
## HiC_scaffold_78_55395445 "0/0"
## HiC_scaffold_78_59610866 "1/1"
## HiC_scaffold_78_62136661 "1/1"
## HiC_scaffold_79_1643780 "1/1"
## HiC_scaffold_79_2519178 "1/1"
## HiC_scaffold_79_2858100 "0/0"
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## HiC_scaffold_79_4127878 "1|1"
## HiC_scaffold_79_4543693 "0/0"
## HiC_scaffold_79_11507678 NA
## HiC_scaffold_79_12618812 "1/1"
## HiC_scaffold_79_14185404 "1|1"
## HiC_scaffold_79_17120237 NA
## HiC_scaffold_79_17120254 NA
## HiC_scaffold_79_35551507 "1/1"
## HiC_scaffold_79_35551543 "1/1"
## HiC_scaffold_79_38927423 "0/0"
## HiC_scaffold_79_42623307 "0/0"
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## HiC_scaffold_79_43180099 "0/0"
## HiC_scaffold_79_43828078 "0/0"
## HiC_scaffold_79_43872513 "0/1"
## HiC_scaffold_79_44627215 NA
## HiC_scaffold_79_50772769 NA
## HiC_scaffold_79_55468575 "0/0"
## HiC_scaffold_79_55816114 "0/0"
## HiC_scaffold_79_59915784 "0/0"
## HiC_scaffold_79_60165298 "0/0"
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## HiC_scaffold_79_69145556 "0/0"
## HiC_scaffold_79_70208305 "0/0"
## HiC_scaffold_79_73412292 "0/0"
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## HiC_scaffold_79_86283512 "1/1"
## HiC_scaffold_79_87123758 "1|1"
## HiC_scaffold_79_88362889 "1/1"
## HiC_scaffold_79_88599431 "1/1"
## HiC_scaffold_79_89322919 "1/1"
## HiC_scaffold_79_89331918 "1/1"
## HiC_scaffold_79_91340958 "0/0"
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## HiC_scaffold_8_25348483 NA
## HiC_scaffold_8_25421933 "1/1"
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## HiC_scaffold_8_27602740 "0/0"
## HiC_scaffold_8_28159063 "0/1"
## HiC_scaffold_8_30829320 NA
## HiC_scaffold_8_31044084 "0/0"
## HiC_scaffold_8_31415507 "0/0"
## HiC_scaffold_8_32594682 NA
## HiC_scaffold_80_3617847 "1/1"
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## HiC_scaffold_80_6760006 "0/0"
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## HiC_scaffold_80_8110052 "0/0"
## HiC_scaffold_80_8193366 "1/1"
## HiC_scaffold_80_8625784 NA
## HiC_scaffold_80_8912846 "0/0"
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## HiC_scaffold_80_10770701 "1/1"
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## HiC_scaffold_80_18938832 "0/0"
## HiC_scaffold_80_19015946 "0/0"
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## HiC_scaffold_80_25346708 "0/0"
## HiC_scaffold_80_37479851 "0/0"
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## HiC_scaffold_81_1187192 "0/0"
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## HiC_scaffold_81_40271282 "0/0"
## HiC_scaffold_81_40271294 "1/1"
## HiC_scaffold_81_41096427 NA
## HiC_scaffold_81_41096444 NA
## HiC_scaffold_81_43820595 "0/1"
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## HiC_scaffold_81_43854278 "1/1"
## HiC_scaffold_81_44804862 "1/1"
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## HiC_scaffold_82_36173035 "1/1"
## HiC_scaffold_82_40539273 "0/0"
## HiC_scaffold_82_41470256 "1/1"
## HiC_scaffold_83_23993605 NA
## HiC_scaffold_83_35035961 "0/0"
## HiC_scaffold_83_43423618 "0/0"
## HiC_scaffold_83_46920654 "0/0"
## HiC_scaffold_83_46934197 NA
## HiC_scaffold_84_356301 "0/0"
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## HiC_scaffold_84_5769022 "0/0"
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## HiC_scaffold_84_10148442 "0/0"
## HiC_scaffold_84_14659391 NA
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## HiC_scaffold_84_18463244 "1/1"
## HiC_scaffold_84_22909575 NA
## HiC_scaffold_84_29275266 NA
## HiC_scaffold_84_31184610 "1/1"
## HiC_scaffold_84_33093169 NA
## HiC_scaffold_84_37675180 "1/1"
## HiC_scaffold_84_39501814 "0/0"
## HiC_scaffold_84_50169438 NA
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## HiC_scaffold_84_51231025 "1/1"
## HiC_scaffold_85_9792207 "0/0"
## HiC_scaffold_85_11784233 NA
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## HiC_scaffold_85_11913828 "0/0"
## HiC_scaffold_85_11913831 "1/1"
## HiC_scaffold_85_12353081 NA
## HiC_scaffold_85_12414551 "0/1"
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## HiC_scaffold_85_13221888 "1/1"
## HiC_scaffold_85_27008863 "0/0"
## HiC_scaffold_85_28992264 NA
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## HiC_scaffold_85_65135112 "0/0"
## HiC_scaffold_85_65563529 "0/0"
## HiC_scaffold_86_1949664 "0/0"
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## HiC_scaffold_86_5483991 "0/0"
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## HiC_scaffold_86_23727924 "1|1"
## HiC_scaffold_86_24825818 "1|1"
## HiC_scaffold_86_25333718 NA
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## HiC_scaffold_86_32040320 "0/0"
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## HiC_scaffold_86_32125061 "1/1"
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## HiC_scaffold_86_32153692 "0/0"
## HiC_scaffold_86_32534129 "1/1"
## HiC_scaffold_86_32605768 "0/0"
## HiC_scaffold_86_36355399 "1/1"
## HiC_scaffold_86_36357265 "1/1"
## HiC_scaffold_87_1253643 "1/1"
## HiC_scaffold_87_2137958 NA
## HiC_scaffold_87_3980100 "1/1"
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## HiC_scaffold_87_5489328 "1|1"
## HiC_scaffold_87_6300441 "1/1"
## HiC_scaffold_87_16306904 NA
## HiC_scaffold_87_44780945 "1|1"
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## HiC_scaffold_88_7104630 "1|1"
## HiC_scaffold_88_7104631 "1|1"
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## HiC_scaffold_88_7104639 "1|1"
## HiC_scaffold_88_7104640 "1|1"
## HiC_scaffold_88_7479340 NA
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## HiC_scaffold_88_10878718 "0/0"
## HiC_scaffold_88_19365116 "1/1"
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## HiC_scaffold_89_42054991 "0/1"
## HiC_scaffold_89_44306958 "0/1"
## HiC_scaffold_89_44338206 NA
## HiC_scaffold_89_45298973 "1/1"
## HiC_scaffold_9_3529921 NA
## HiC_scaffold_9_5660454 "1|1"
## HiC_scaffold_9_5660461 "1|1"
## HiC_scaffold_9_5854070 "0/0"
## HiC_scaffold_9_6142415 NA
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## HiC_scaffold_9_6143781 "0/0"
## HiC_scaffold_9_6654825 "1/1"
## HiC_scaffold_9_7094545 NA
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## HiC_scaffold_9_8235781 "0/0"
## HiC_scaffold_9_8279558 "1/1"
## HiC_scaffold_9_15679481 NA
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## HiC_scaffold_9_30240531 "0/0"
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## HiC_scaffold_90_22325499 "1/1"
## HiC_scaffold_90_23574204 "0/0"
## HiC_scaffold_90_23609908 "0/0"
## HiC_scaffold_90_23623078 "1|1"
## HiC_scaffold_90_23626883 NA
## HiC_scaffold_90_23812663 NA
## HiC_scaffold_90_25939283 "1/1"
## HiC_scaffold_90_25985714 NA
## HiC_scaffold_90_30751272 "0/0"
## HiC_scaffold_90_31232025 NA
## HiC_scaffold_90_31245699 NA
## HiC_scaffold_90_31527975 "0/0"
## HiC_scaffold_90_31546172 NA
## HiC_scaffold_90_38511996 "0/0"
## HiC_scaffold_90_38511999 NA
## HiC_scaffold_90_38517279 "1/1"
## HiC_scaffold_90_40624104 "1/1"
## HiC_scaffold_91_5644765 "1|1"
## HiC_scaffold_91_5867214 "0/0"
## HiC_scaffold_91_5867226 "0/0"
## HiC_scaffold_91_7704263 "0/0"
## HiC_scaffold_91_7871360 "0/0"
## HiC_scaffold_91_8538014 "1/1"
## HiC_scaffold_91_13230485 "1|1"
## HiC_scaffold_91_28696118 "1/1"
## HiC_scaffold_91_28696625 "1|1"
## HiC_scaffold_91_42177482 "0/0"
## HiC_scaffold_91_46813640 "0/0"
## HiC_scaffold_92_23783035 "0/0"
## HiC_scaffold_92_23783036 "0/0"
## HiC_scaffold_92_24712793 "0/0"
## HiC_scaffold_92_28698258 "0/1"
## HiC_scaffold_92_40691582 "0/0"
## HiC_scaffold_92_43967712 "1/1"
## HiC_scaffold_92_47147572 "0/0"
## HiC_scaffold_92_49042714 "0|1"
## HiC_scaffold_92_49042715 "0|1"
## HiC_scaffold_92_53634002 "1/1"
## HiC_scaffold_92_58211868 "0/0"
## HiC_scaffold_92_60114155 NA
## HiC_scaffold_92_63603483 "0/0"
## HiC_scaffold_92_64797225 "0/0"
## HiC_scaffold_92_68367476 "0/0"
## HiC_scaffold_93_1912167 NA
## HiC_scaffold_93_2485978 "0/0"
## HiC_scaffold_93_3227638 "0/1"
## HiC_scaffold_93_3227641 "0/1"
## HiC_scaffold_93_13971208 NA
## HiC_scaffold_93_13987080 NA
## HiC_scaffold_93_21125468 "0/0"
## HiC_scaffold_93_21845293 "0/0"
## HiC_scaffold_93_21845310 "1|1"
## HiC_scaffold_93_21846342 "0/0"
## HiC_scaffold_93_21846356 "1/1"
## HiC_scaffold_93_22589723 "1/1"
## HiC_scaffold_93_22619278 "1/1"
## HiC_scaffold_93_22631258 "0/0"
## HiC_scaffold_93_22631266 "0/0"
## HiC_scaffold_94_3110102 "1/1"
## HiC_scaffold_94_3205919 "1/1"
## HiC_scaffold_94_9023846 "0/1"
## HiC_scaffold_94_11572820 "1/1"
## HiC_scaffold_94_12368532 "1/1"
## HiC_scaffold_94_42179418 "1/1"
## HiC_scaffold_94_42179519 "0/0"
## HiC_scaffold_94_51646206 NA
## HiC_scaffold_94_52781289 NA
## HiC_scaffold_94_53790035 "0/0"
## HiC_scaffold_94_53792738 NA
## HiC_scaffold_94_56768905 "1|1"
## HiC_scaffold_946_81276 NA
## HiC_scaffold_95_3189690 "1/1"
## HiC_scaffold_95_4397298 NA
## HiC_scaffold_95_9469157 NA
## HiC_scaffold_95_10641411 "0/1"
## HiC_scaffold_95_10949821 "1/1"
## HiC_scaffold_95_12993394 "0|1"
## HiC_scaffold_95_15515793 NA
## HiC_scaffold_95_15608785 NA
## HiC_scaffold_95_15609137 "0/0"
## HiC_scaffold_95_16295316 "1/1"
## HiC_scaffold_95_22656165 NA
## HiC_scaffold_95_25885727 "0/1"
## HiC_scaffold_96_10460019 NA
## HiC_scaffold_96_27155785 "0/0"
## HiC_scaffold_96_37939434 "0/0"
## HiC_scaffold_96_51115048 NA
## HiC_scaffold_96_51116511 NA
## HiC_scaffold_96_51915040 NA
## HiC_scaffold_96_52681287 "0/1"
## HiC_scaffold_96_53276519 "0/0"
## HiC_scaffold_97_1736926 "0|1"
## HiC_scaffold_97_1736994 "0/0"
## HiC_scaffold_97_3863543 "1/1"
## HiC_scaffold_97_4200445 "0/1"
## HiC_scaffold_97_4799162 "0/0"
## HiC_scaffold_97_5027892 "1/1"
## HiC_scaffold_97_8007933 NA
## HiC_scaffold_97_17997210 "0/0"
## HiC_scaffold_97_18604647 NA
## HiC_scaffold_97_20239636 "0/0"
## HiC_scaffold_98_15154096 "0/0"
## HiC_scaffold_98_22342667 NA
## HiC_scaffold_98_22634293 "1|1"
## HiC_scaffold_98_22634294 "1|1"
## HiC_scaffold_98_22721138 "0|1"
## HiC_scaffold_98_22869378 "0/0"
## HiC_scaffold_98_24108405 "0/0"
## HiC_scaffold_98_27359592 NA
## HiC_scaffold_98_28549834 "0/0"
## HiC_scaffold_98_28867520 "0/1"
## HiC_scaffold_98_28867524 "0/1"
## HiC_scaffold_98_29431717 NA
## HiC_scaffold_98_29675109 "0/0"
## HiC_scaffold_99_1163244 "0/0"
## HiC_scaffold_99_1451611 NA
## HiC_scaffold_99_2021961 "0/0"
## HiC_scaffold_99_5134392 "0/0"
## HiC_scaffold_99_5239109 "0/0"
## HiC_scaffold_99_6917738 NA
## HiC_scaffold_99_11221970 "0/0"
## HiC_scaffold_99_25982503 "1/1"
# Confirm order of samples in vcf matches order of samples in the "sample.info" dataframe
all(colnames(extract.gt(vcf)) == sample.info$Sample) # no, not in same order. Need to create a re-ordered sample.info object
## [1] FALSE
sample.info.vcf <- sample.info %>% dplyr::slice(match(colnames(extract.gt(vcf)), Sample)) %>%
mutate(Treatment=as.factor(Treatment))
# How many samples per pH treatment?
nsamples <- sample.info.vcf[match(colnames(extract.gt(vcf)), sample.info.vcf$Sample),] %>% group_by(Treatment) %>% tally()
# Calculate differentiation / diversity stats for each treatment
myDiff <- genetic_diff(vcf, pops = sample.info.vcf$Treatment, method = 'nei')
paste("No. SNPs included in this vcfR analysis ", nrow(myDiff), sep="")
## [1] "No. SNPs included in this vcfR analysis 1429"
# Summarize diversity indices (mean)
knitr::kable(round(colMeans(myDiff[,-1:-2], na.rm = TRUE), digits = 3))
| x | |
|---|---|
| Hs_Ambient | 0.406 |
| Hs_Low | 0.410 |
| Hs_Moderate | 0.406 |
| Ht | 0.426 |
| n_Ambient | 23.475 |
| n_Low | 26.318 |
| n_Moderate | 22.161 |
| Gst | 0.043 |
| Htmax | 0.800 |
| Gstmax | 0.495 |
| Gprimest | 0.086 |
dpf <- melt(myDiff[,c(3:5)], varnames=c('Index', 'Sample'), value.name = 'Depth', na.rm=TRUE) %>%
mutate(Treatment=as.factor(substring(variable, 4)))
## No id variables; using all as measure variables
ggplot(dpf, aes(x=Treatment, y=Depth)) +
geom_violin(aes(fill=Treatment), adjust = 1.2, alpha=0.75) +
xlab("") + ylab("") + theme_bw() +
theme(axis.text.x = element_text(size=7, angle=50, hjust=1)) +
ggtitle(paste("Heterozygosity by pH Treatment \nNo. SNPs =", nrow(myDiff))) +
stat_summary(fun.y=mean, geom="point", shape=15, size=3, color="black", fill="black") +
geom_text(data=dpf %>% group_by(Treatment) %>%
summarize(mean=mean(Depth)), aes(x=Treatment, y=.45, label=round(mean, 4)), size=3) +
scale_fill_manual(values = c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"))
## Warning: `fun.y` is deprecated. Use `fun` instead.
dpf.n <- melt(myDiff[,c(7:9)], varnames=c('Index', 'Sample'), value.name = 'Depth', na.rm=TRUE) %>%
mutate(Treatment=as.factor(substring(variable, 3)))
## No id variables; using all as measure variables
ggplot(dpf.n, aes(x=Treatment, y=Depth)) +
geom_violin(aes(fill=Treatment), adjust = 1.2, alpha=0.75) +
xlab("") + ylab("") + theme_bw() +
theme(axis.text.x = element_text(size=7, angle=50, hjust=1)) +
ggtitle(paste("Allelic Richnes by pH Treatment \nNo. SNPs =", nrow(myDiff))) +
stat_summary(fun.y=mean, geom="point", shape=15, size=3, color="black", fill="black") +
geom_text(data=dpf %>% group_by(Treatment) %>%
summarize(mean=mean(Depth)), aes(x=Treatment, y=31, label=round(mean, 4)), size=3) +
scale_fill_manual(values = c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"))
## Warning: `fun.y` is deprecated. Use `fun` instead.
# Use vcfR to generate a dataframe with snp location information. Also generates a ton of other info
(snps.map <- genetic_diff(vcf, pops = as.factor(sample.info.vcf$Treatment), method = 'nei') %>%
mutate(POS=as.numeric(POS)) %>% mutate(start=POS-1, end=POS+1) %>% rename("CHROM"="chrom"))
## chrom POS Hs_Ambient Hs_Low Hs_Moderate Ht
## 1 HiC_scaffold_1 2523394 0.45266272 0.47337278 0.49586777 0.47662527
## 2 HiC_scaffold_1 2542157 0.39669421 0.46875000 0.48611111 0.45918367
## 3 HiC_scaffold_1 2647806 0.32000000 0.32000000 0.41319444 0.35390796
## 4 HiC_scaffold_1 2970226 0.39349112 0.47704082 0.42603550 0.43875000
## 5 HiC_scaffold_1 3329447 0.27218935 0.40625000 0.14201183 0.27804709
## 6 HiC_scaffold_1 3795100 0.49500000 0.48000000 0.35123967 0.47530864
## 7 HiC_scaffold_10 2221345 0.46280992 0.50000000 0.43388430 0.48000000
## 8 HiC_scaffold_10 2299490 0.43622449 0.44444444 0.44444444 0.44122449
## 9 HiC_scaffold_10 2565301 0.50000000 0.49744898 0.48000000 0.49632653
## 10 HiC_scaffold_10 3864355 0.49704142 0.35123967 0.49586777 0.49346939
## 11 HiC_scaffold_10 4319900 0.43622449 0.48816568 0.46875000 0.49959184
## 12 HiC_scaffold_10 4319907 0.43622449 0.48816568 0.46875000 0.49959184
## 13 HiC_scaffold_10 5404579 0.37500000 0.44444444 0.45500000 0.42841490
## 14 HiC_scaffold_10 5843373 0.45500000 0.48979592 0.45266272 0.47041636
## 15 HiC_scaffold_100 854947 0.42603550 0.47337278 0.39669421 0.43827611
## 16 HiC_scaffold_100 1070817 0.49652778 0.43622449 0.44444444 0.49632653
## 17 HiC_scaffold_100 2002094 0.49408284 0.48979592 0.61538462 0.56156250
## 18 HiC_scaffold_100 2002097 0.45266272 0.48979592 0.49704142 0.49968750
## 19 HiC_scaffold_100 2010331 0.48816568 0.48816568 0.50000000 0.49382716
## 20 HiC_scaffold_100 5186498 0.21875000 0.26035503 0.00000000 0.17554012
## 21 HiC_scaffold_100 5828477 0.45266272 0.48979592 0.42000000 0.46347699
## 22 HiC_scaffold_100 6470419 0.39669421 0.47337278 0.48611111 0.46141975
## 23 HiC_scaffold_100 6739225 0.41319444 0.47704082 0.45500000 0.49035494
## 24 HiC_scaffold_100 6739258 0.47337278 0.50000000 0.46280992 0.48753463
## 25 HiC_scaffold_100 6739264 0.44444444 0.50000000 0.46280992 0.48210373
## 26 HiC_scaffold_100 6907177 0.44444444 0.44444444 0.47530864 0.45331790
## 27 HiC_scaffold_100 8384481 0.48611111 0.49744898 0.49500000 0.49845679
## 28 HiC_scaffold_100 8384495 0.49586777 0.49744898 0.48000000 0.49836735
## 29 HiC_scaffold_100 9451470 0.30991736 0.32840237 0.52479339 0.39469388
## 30 HiC_scaffold_100 10464574 0.48347107 0.49744898 0.37500000 0.48530612
## 31 HiC_scaffold_100 11934792 0.49586777 0.41319444 0.48611111 0.47387755
## 32 HiC_scaffold_100 11980177 0.16528926 0.12444444 0.08677686 0.12600438
## 33 HiC_scaffold_100 18465760 0.40816327 0.42000000 0.45500000 0.42603550
## 34 HiC_scaffold_100 18465762 0.40816327 0.42000000 0.45500000 0.42603550
## 35 HiC_scaffold_100 18466205 0.50000000 0.35502959 0.63500000 0.52122449
## 36 HiC_scaffold_100 31738115 0.46875000 0.42603550 0.48000000 0.45918367
## 37 HiC_scaffold_100 44227362 0.43388430 0.47337278 0.29752066 0.42000000
## 38 HiC_scaffold_101 12808961 0.37500000 0.31065089 0.49652778 0.44122449
## 39 HiC_scaffold_101 13897149 0.32986111 0.46875000 0.35123967 0.39551020
## 40 HiC_scaffold_101 18337279 0.41319444 0.33673469 0.49382716 0.44122449
## 41 HiC_scaffold_101 20800167 0.27777778 0.31065089 0.20414201 0.26489796
## 42 HiC_scaffold_102 2260041 0.49500000 0.33673469 0.41319444 0.42438272
## 43 HiC_scaffold_102 8734519 0.48611111 0.50000000 0.49652778 0.49632653
## 44 HiC_scaffold_102 10233999 0.49704142 0.27777778 0.50000000 0.46693878
## 45 HiC_scaffold_102 11446042 0.44444444 0.46444444 0.46280992 0.45918367
## 46 HiC_scaffold_102 15918694 0.50000000 0.49704142 0.46875000 0.49836735
## 47 HiC_scaffold_102 15935667 0.48816568 0.35502959 0.39669421 0.46347699
## 48 HiC_scaffold_102 17442643 0.43622449 0.43388430 0.46280992 0.44444444
## 49 HiC_scaffold_102 17608969 0.37500000 0.48347107 0.37500000 0.42000000
## 50 HiC_scaffold_102 20180185 0.49500000 0.48816568 0.48816568 0.49035494
## 51 HiC_scaffold_102 24788723 0.44444444 0.45266272 0.37500000 0.43102041
## 52 HiC_scaffold_102 25423729 0.19753086 0.24489796 0.07986111 0.18000000
## 53 HiC_scaffold_102 39755142 0.48816568 0.43388430 0.39349112 0.47662527
## 54 HiC_scaffold_102 52046978 0.48347107 0.47704082 0.46875000 0.49853908
## 55 HiC_scaffold_1027 34152 0.48979592 0.47704082 0.49586777 0.50000000
## 56 HiC_scaffold_103 601715 0.35777778 0.44444444 0.48000000 0.48685172
## 57 HiC_scaffold_103 2891384 0.48611111 0.46875000 0.39669421 0.45918367
## 58 HiC_scaffold_103 8191270 0.35123967 0.41777778 0.61111111 0.48095568
## 59 HiC_scaffold_103 9521272 0.44444444 0.37500000 0.21875000 0.35265306
## 60 HiC_scaffold_103 14768909 0.46280992 0.49652778 0.50000000 0.49836735
## 61 HiC_scaffold_103 19312119 0.18000000 0.37500000 0.08677686 0.24489796
## 62 HiC_scaffold_103 21284866 0.42603550 0.42603550 0.48611111 0.45013850
## 63 HiC_scaffold_103 31428453 0.27777778 0.48611111 0.49586777 0.48979592
## 64 HiC_scaffold_103 42567396 0.49652778 0.50000000 0.43388430 0.49688366
## 65 HiC_scaffold_103 45921571 0.45500000 0.50000000 0.29752066 0.45918367
## 66 HiC_scaffold_103 45921573 0.39349112 0.50000000 0.29752066 0.44148199
## 67 HiC_scaffold_103 49592022 0.49704142 0.50000000 0.50000000 0.49959184
## 68 HiC_scaffold_103 49620132 0.49500000 0.48816568 0.48816568 0.49652778
## 69 HiC_scaffold_103 50440915 0.39349112 0.39349112 0.49586777 0.43827611
## 70 HiC_scaffold_103 51944137 0.37500000 0.26035503 0.49586777 0.40123457
## 71 HiC_scaffold_103 54308582 0.49744898 0.29336735 0.32000000 0.43213296
## 72 HiC_scaffold_103 54424067 0.29752066 0.49652778 0.44444444 0.45918367
## 73 HiC_scaffold_103 56932900 0.15277778 0.14201183 0.08677686 0.12924383
## 74 HiC_scaffold_103 57470264 0.00000000 0.14201183 0.45500000 0.22408163
## 75 HiC_scaffold_104 7771140 0.34567901 0.13265306 0.00000000 0.15277778
## 76 HiC_scaffold_104 9103028 0.50000000 0.48816568 0.48611111 0.49382716
## 77 HiC_scaffold_104 10633168 0.42603550 0.31065089 0.50000000 0.43479938
## 78 HiC_scaffold_104 18917031 0.49586777 0.50000000 0.50000000 0.49959184
## 79 HiC_scaffold_104 20851902 0.37500000 0.44444444 0.39349112 0.47662527
## 80 HiC_scaffold_104 24451803 0.46875000 0.44444444 0.44444444 0.45331790
## 81 HiC_scaffold_104 28597688 0.49704142 0.48347107 0.48816568 0.49086925
## 82 HiC_scaffold_104 40927999 0.49652778 0.33673469 0.44444444 0.49346939
## 83 HiC_scaffold_104 46490074 0.46875000 0.48816568 0.37500000 0.45918367
## 84 HiC_scaffold_104 49759053 0.35502959 0.48979592 0.35123967 0.42209141
## 85 HiC_scaffold_104 57267896 0.49586777 0.48816568 0.48347107 0.49959184
## 86 HiC_scaffold_104 62570010 0.48000000 0.42603550 0.41319444 0.44122449
## 87 HiC_scaffold_11 32804173 0.48611111 0.41319444 0.48347107 0.46693878
## 88 HiC_scaffold_11 34516508 0.00000000 0.16528926 0.25500000 0.13265306
## 89 HiC_scaffold_11 35332996 0.45266272 0.49586777 0.46280992 0.47387755
## 90 HiC_scaffold_11 35904027 0.37500000 0.43622449 0.35123967 0.39551020
## 91 HiC_scaffold_11 41539793 0.47337278 0.43622449 0.42968750 0.45061224
## 92 HiC_scaffold_11 41604080 0.15277778 0.13265306 0.00000000 0.10775510
## 93 HiC_scaffold_11 42855323 0.46875000 0.48611111 0.50000000 0.48979592
## 94 HiC_scaffold_11 45339409 0.45918367 0.41319444 0.42000000 0.43479938
## 95 HiC_scaffold_11 45339410 0.45918367 0.49652778 0.50000000 0.48979592
## 96 HiC_scaffold_11 47544035 0.32986111 0.42603550 0.48347107 0.42438272
## 97 HiC_scaffold_12 7515164 0.41319444 0.48611111 0.43388430 0.45061224
## 98 HiC_scaffold_12 12640100 0.48611111 0.45266272 0.35123967 0.44444444
## 99 HiC_scaffold_12 12826705 0.23553719 0.45266272 0.48611111 0.42438272
## 100 HiC_scaffold_12 14899285 0.29752066 0.48816568 0.50000000 0.46693878
## 101 HiC_scaffold_12 17465672 0.45918367 0.50000000 0.42000000 0.47530864
## 102 HiC_scaffold_12 22770710 0.32986111 0.47337278 0.49586777 0.46875000
## 103 HiC_scaffold_12 32318964 0.50000000 0.37500000 0.39669421 0.44122449
## 104 HiC_scaffold_12 35136373 0.41319444 0.40816327 0.44444444 0.42000000
## 105 HiC_scaffold_12 40687860 0.49652778 0.44444444 0.29752066 0.44122449
## 106 HiC_scaffold_13 2938168 0.42000000 0.27777778 0.15277778 0.28962747
## 107 HiC_scaffold_13 20350974 0.39669421 0.48979592 0.45500000 0.45918367
## 108 HiC_scaffold_13 27759554 0.50000000 0.48347107 0.48347107 0.49346939
## 109 HiC_scaffold_13 28146828 0.46875000 0.35123967 0.35069444 0.41469388
## 110 HiC_scaffold_13 28146830 0.34375000 0.35123967 0.35069444 0.35959184
## 111 HiC_scaffold_13 28925343 0.41777778 0.24380165 0.29012346 0.33959184
## 112 HiC_scaffold_13 31913129 0.29336735 0.48347107 0.43388430 0.48109568
## 113 HiC_scaffold_13 32078924 0.37500000 0.44444444 0.49500000 0.46141975
## 114 HiC_scaffold_13 33864805 0.10493827 0.31065089 0.26035503 0.24489796
## 115 HiC_scaffold_13 34892542 0.46875000 0.50000000 0.50000000 0.49632653
## 116 HiC_scaffold_13 34893103 0.46875000 0.49111111 0.49652778 0.49959184
## 117 HiC_scaffold_13 35762551 0.42000000 0.50000000 0.45266272 0.50000000
## 118 HiC_scaffold_13 35881745 0.07986111 0.37500000 0.27777778 0.25887346
## 119 HiC_scaffold_13 35881749 0.44444444 0.39669421 0.47337278 0.44444444
## 120 HiC_scaffold_14 3843214 0.35123967 0.49652778 0.45266272 0.45331790
## 121 HiC_scaffold_14 25884262 0.29166667 0.52295918 0.54938272 0.47673469
## 122 HiC_scaffold_14 27050415 0.15277778 0.18000000 0.00000000 0.13265306
## 123 HiC_scaffold_14 27118495 0.25500000 0.13265306 0.23553719 0.20244898
## 124 HiC_scaffold_14 27277222 0.23553719 0.47193878 0.53125000 0.44448503
## 125 HiC_scaffold_14 29215814 0.49586777 0.49744898 0.32000000 0.48530612
## 126 HiC_scaffold_15 2460398 0.44444444 0.48816568 0.45500000 0.46537396
## 127 HiC_scaffold_15 2462980 0.49652778 0.45918367 0.45500000 0.49845679
## 128 HiC_scaffold_15 2467289 0.16528926 0.24489796 0.16528926 0.19753086
## 129 HiC_scaffold_15 5669141 0.47530864 0.18000000 0.46875000 0.38850309
## 130 HiC_scaffold_15 13700694 0.14497041 0.35069444 0.15277778 0.22096421
## 131 HiC_scaffold_15 17825275 0.46875000 0.42603550 0.45500000 0.48979592
## 132 HiC_scaffold_15 19938475 0.39669421 0.50000000 0.49586777 0.48530612
## 133 HiC_scaffold_15 23865956 0.35502959 0.44444444 0.29752066 0.38132807
## 134 HiC_scaffold_15 28837774 0.49777778 0.49704142 0.47530864 0.49853908
## 135 HiC_scaffold_15 28837810 0.41319444 0.48000000 0.50000000 0.47662527
## 136 HiC_scaffold_15 28837823 0.45266272 0.49704142 0.39669421 0.47662527
## 137 HiC_scaffold_15 28837835 0.48611111 0.48979592 0.46280992 0.49671293
## 138 HiC_scaffold_15 28837841 0.48611111 0.37500000 0.49586777 0.46347699
## 139 HiC_scaffold_15 28837854 0.09500000 0.40816327 0.41319444 0.34567901
## 140 HiC_scaffold_15 34827832 0.46875000 0.37500000 0.39669421 0.42000000
## 141 HiC_scaffold_15 34893807 0.42603550 0.43388430 0.46875000 0.44444444
## 142 HiC_scaffold_15 35327348 0.44444444 0.49777778 0.48347107 0.48530612
## 143 HiC_scaffold_15 42161112 0.32000000 0.40816327 0.48347107 0.42000000
## 144 HiC_scaffold_15 42164926 0.32986111 0.45918367 0.39669421 0.47662527
## 145 HiC_scaffold_15 42164946 0.43388430 0.33673469 0.49500000 0.48979592
## 146 HiC_scaffold_15 46289572 0.21875000 0.46444444 0.47337278 0.43479938
## 147 HiC_scaffold_15 50591576 0.19753086 0.35502959 0.47337278 0.38204082
## 148 HiC_scaffold_15 50759128 0.50000000 0.42000000 0.48347107 0.47387755
## 149 HiC_scaffold_15 51188336 0.43388430 0.48979592 0.48000000 0.47387755
## 150 HiC_scaffold_15 54726640 0.19753086 0.24489796 0.32986111 0.26489796
## 151 HiC_scaffold_15 54788235 0.50000000 0.49777778 0.50000000 0.49959184
## 152 HiC_scaffold_15 56162375 0.39669421 0.48347107 0.42603550 0.49836735
## 153 HiC_scaffold_15 61091106 0.47337278 0.46875000 0.41319444 0.49086925
## 154 HiC_scaffold_15 61464359 0.14201183 0.08677686 0.16528926 0.13265306
## 155 HiC_scaffold_15 61510386 0.49586777 0.43622449 0.50000000 0.48530612
## 156 HiC_scaffold_15 62309788 0.49652778 0.31065089 0.42000000 0.43102041
## 157 HiC_scaffold_15 62309793 0.50000000 0.31065089 0.42000000 0.44122449
## 158 HiC_scaffold_15 62771254 0.29336735 0.50000000 0.39669421 0.43556870
## 159 HiC_scaffold_15 63493927 0.35123967 0.06887755 0.39669421 0.27777778
## 160 HiC_scaffold_15 64997502 0.49652778 0.40816327 0.44444444 0.45810249
## 161 HiC_scaffold_15 65007865 0.21875000 0.13265306 0.10493827 0.15673469
## 162 HiC_scaffold_15 65007879 0.47337278 0.44444444 0.48347107 0.46875000
## 163 HiC_scaffold_15 66038529 0.47337278 0.50000000 0.49586777 0.49853908
## 164 HiC_scaffold_15 69811281 0.29752066 0.21875000 0.21875000 0.24489796
## 165 HiC_scaffold_16 14205925 0.50000000 0.44444444 0.48000000 0.48530612
## 166 HiC_scaffold_16 30404047 0.37500000 0.45918367 0.39669421 0.42000000
## 167 HiC_scaffold_16 57413288 0.43388430 0.37500000 0.46875000 0.48000000
## 168 HiC_scaffold_16 63687578 0.49500000 0.37500000 0.37500000 0.42438272
## 169 HiC_scaffold_16 74138787 0.48611111 0.48816568 0.46280992 0.48109568
## 170 HiC_scaffold_16 74140106 0.41319444 0.46875000 0.46280992 0.45061224
## 171 HiC_scaffold_16 76276015 0.49704142 0.39669421 0.43388430 0.45918367
## 172 HiC_scaffold_17 11390873 0.49382716 0.50000000 0.47337278 0.49836735
## 173 HiC_scaffold_17 12551128 0.35502959 0.35123967 0.21875000 0.31327160
## 174 HiC_scaffold_17 16615612 0.37500000 0.48979592 0.35123967 0.43102041
## 175 HiC_scaffold_17 18838093 0.49744898 0.45500000 0.35123967 0.47387755
## 176 HiC_scaffold_17 22801072 0.48611111 0.37500000 0.50000000 0.49382716
## 177 HiC_scaffold_17 23788599 0.48347107 0.46444444 0.50000000 0.48753463
## 178 HiC_scaffold_17 29383895 0.45918367 0.43388430 0.46280992 0.45331790
## 179 HiC_scaffold_17 29618771 0.48816568 0.49744898 0.49500000 0.49853908
## 180 HiC_scaffold_17 29976139 0.47337278 0.49586777 0.48611111 0.48611111
## 181 HiC_scaffold_17 31107213 0.07986111 0.32986111 0.00000000 0.15673469
## 182 HiC_scaffold_17 32493792 0.48347107 0.41319444 0.44444444 0.45061224
## 183 HiC_scaffold_17 33732050 0.47704082 0.48816568 0.50000000 0.49961420
## 184 HiC_scaffold_17 33801314 0.48347107 0.50000000 0.49586777 0.49652778
## 185 HiC_scaffold_17 34081889 0.19132653 0.26035503 0.30468750 0.24489796
## 186 HiC_scaffold_18 227565 0.49744898 0.50000000 0.42603550 0.49445983
## 187 HiC_scaffold_18 1213486 0.42603550 0.35502959 0.32000000 0.37500000
## 188 HiC_scaffold_18 1701312 0.35069444 0.40051020 0.18000000 0.32870370
## 189 HiC_scaffold_18 3506437 0.27777778 0.39349112 0.45500000 0.38204082
## 190 HiC_scaffold_18 6304978 0.21875000 0.37500000 0.44444444 0.35265306
## 191 HiC_scaffold_18 6351493 0.23553719 0.18000000 0.35502959 0.26035503
## 192 HiC_scaffold_18 6358009 0.31065089 0.49652778 0.48347107 0.48109568
## 193 HiC_scaffold_18 10770701 0.48611111 0.29336735 0.48347107 0.43827611
## 194 HiC_scaffold_18 13342858 0.15277778 0.37500000 0.43388430 0.33893353
## 195 HiC_scaffold_18 20045832 0.14201183 0.16528926 0.29752066 0.20897959
## 196 HiC_scaffold_18 22682683 0.40816327 0.32986111 0.49500000 0.42438272
## 197 HiC_scaffold_18 26337790 0.48000000 0.39111111 0.50000000 0.46693878
## 198 HiC_scaffold_18 48929148 0.42603550 0.49652778 0.18000000 0.42000000
## 199 HiC_scaffold_18 51490626 0.49218750 0.49744898 0.45266272 0.49346939
## 200 HiC_scaffold_18 53723137 0.45266272 0.46280992 0.48347107 0.46693878
## 201 HiC_scaffold_18 54496637 0.44444444 0.37500000 0.49382716 0.44122449
## 202 HiC_scaffold_18 55294388 0.48816568 0.50000000 0.46280992 0.49959184
## 203 HiC_scaffold_19 279726 0.44444444 0.49744898 0.45500000 0.49845679
## 204 HiC_scaffold_19 6426572 0.44444444 0.49586777 0.48611111 0.49632653
## 205 HiC_scaffold_19 6575887 0.46875000 0.47337278 0.49586777 0.49035494
## 206 HiC_scaffold_19 7755254 0.45918367 0.44444444 0.46875000 0.45810249
## 207 HiC_scaffold_19 9301421 0.32986111 0.49744898 0.37500000 0.45331790
## 208 HiC_scaffold_19 9357388 0.48816568 0.49652778 0.32000000 0.46693878
## 209 HiC_scaffold_19 9778841 0.48611111 0.31065089 0.43388430 0.42438272
## 210 HiC_scaffold_19 10928976 0.49652778 0.48611111 0.49652778 0.49382716
## 211 HiC_scaffold_19 10928980 0.49652778 0.46875000 0.49652778 0.49035494
## 212 HiC_scaffold_19 10928982 0.50000000 0.50000000 0.49652778 0.49959184
## 213 HiC_scaffold_19 11106347 0.37500000 0.48347107 0.27777778 0.44122449
## 214 HiC_scaffold_19 11590139 0.48347107 0.49704142 0.46875000 0.50000000
## 215 HiC_scaffold_19 11665300 0.35123967 0.16528926 0.26035503 0.26489796
## 216 HiC_scaffold_19 14793640 0.37500000 0.48816568 0.45500000 0.45061224
## 217 HiC_scaffold_19 22112743 0.45918367 0.46875000 0.44444444 0.45918367
## 218 HiC_scaffold_19 25473671 0.35123967 0.06887755 0.27777778 0.23374726
## 219 HiC_scaffold_19 25473692 0.37500000 0.49744898 0.49652778 0.49445983
## 220 HiC_scaffold_19 28110829 0.49586777 0.45918367 0.49586777 0.49382716
## 221 HiC_scaffold_19 28465002 0.41319444 0.44444444 0.42968750 0.43102041
## 222 HiC_scaffold_19 28465167 0.49586777 0.48816568 0.35502959 0.47662527
## 223 HiC_scaffold_19 30106869 0.46280992 0.48979592 0.37500000 0.50000000
## 224 HiC_scaffold_19 52538858 0.00000000 0.24489796 0.19753086 0.15277778
## 225 HiC_scaffold_19 52596196 0.33673469 0.43622449 0.50000000 0.44148199
## 226 HiC_scaffold_19 53482993 0.47337278 0.45266272 0.37500000 0.44148199
## 227 HiC_scaffold_19 54312637 0.07396450 0.29752066 0.32986111 0.23919753
## 228 HiC_scaffold_19 59345841 0.46280992 0.48000000 0.49500000 0.49961420
## 229 HiC_scaffold_2 3296144 0.00000000 0.16528926 0.14201183 0.10226443
## 230 HiC_scaffold_2 3418589 0.50000000 0.48816568 0.48611111 0.50000000
## 231 HiC_scaffold_2 3864060 0.47337278 0.35502959 0.42000000 0.42438272
## 232 HiC_scaffold_2 4104755 0.18000000 0.43877551 0.36776860 0.35959184
## 233 HiC_scaffold_2 4104758 0.18000000 0.39030612 0.30991736 0.31959184
## 234 HiC_scaffold_2 8316721 0.48347107 0.37500000 0.46280992 0.44444444
## 235 HiC_scaffold_2 9098999 0.49500000 0.47704082 0.50000000 0.49346939
## 236 HiC_scaffold_2 10457537 0.46280992 0.37500000 0.42603550 0.42438272
## 237 HiC_scaffold_2 19048125 0.45500000 0.50000000 0.45266272 0.48210373
## 238 HiC_scaffold_2 21748201 0.21875000 0.26035503 0.00000000 0.17129291
## 239 HiC_scaffold_2 33187764 0.35123967 0.44444444 0.48000000 0.43479938
## 240 HiC_scaffold_2 33187770 0.35123967 0.44444444 0.48347107 0.43827611
## 241 HiC_scaffold_2 33187959 0.48000000 0.44444444 0.49500000 0.48530612
## 242 HiC_scaffold_2 41603929 0.48347107 0.49744898 0.49652778 0.49853908
## 243 HiC_scaffold_2 52233191 0.50000000 0.43622449 0.32000000 0.45580716
## 244 HiC_scaffold_2 52400748 0.44444444 0.27777778 0.35123967 0.35265306
## 245 HiC_scaffold_2 52403793 0.37500000 0.12444444 0.25500000 0.24489796
## 246 HiC_scaffold_2 52799130 0.37500000 0.35502959 0.32986111 0.35390796
## 247 HiC_scaffold_20 10332897 0.44444444 0.45918367 0.32986111 0.42000000
## 248 HiC_scaffold_20 17198418 0.48816568 0.49704142 0.40123457 0.49959184
## 249 HiC_scaffold_20 17915398 0.40816327 0.50000000 0.48347107 0.47387755
## 250 HiC_scaffold_20 18872955 0.39669421 0.44444444 0.47530864 0.44122449
## 251 HiC_scaffold_20 19055301 0.00000000 0.14201183 0.37500000 0.19284149
## 252 HiC_scaffold_20 19150094 0.31065089 0.41319444 0.48347107 0.41319444
## 253 HiC_scaffold_20 20651022 0.47704082 0.49652778 0.49500000 0.49652778
## 254 HiC_scaffold_20 22651296 0.48347107 0.37500000 0.49652778 0.48000000
## 255 HiC_scaffold_21 2009156 0.47337278 0.48816568 0.44444444 0.49836735
## 256 HiC_scaffold_21 2435648 0.47530864 0.44444444 0.37500000 0.43479938
## 257 HiC_scaffold_21 7164210 0.47530864 0.44444444 0.39669421 0.44122449
## 258 HiC_scaffold_21 9786512 0.47337278 0.46875000 0.46280992 0.46875000
## 259 HiC_scaffold_21 12424922 0.15277778 0.06887755 0.07986111 0.09972299
## 260 HiC_scaffold_21 17966833 0.29752066 0.07986111 0.00000000 0.13265306
## 261 HiC_scaffold_21 19025429 0.48000000 0.50000000 0.35502959 0.49035494
## 262 HiC_scaffold_21 20058318 0.45266272 0.43388430 0.43388430 0.44122449
## 263 HiC_scaffold_21 20562855 0.39349112 0.31065089 0.50000000 0.42000000
## 264 HiC_scaffold_21 20661860 0.16528926 0.49586777 0.39349112 0.42000000
## 265 HiC_scaffold_21 20895395 0.14201183 0.48347107 0.50000000 0.43479938
## 266 HiC_scaffold_21 21158811 0.65561224 0.50000000 0.46000000 0.58552632
## 267 HiC_scaffold_21 22250857 0.49704142 0.47704082 0.37500000 0.46712689
## 268 HiC_scaffold_21 22250866 0.42603550 0.48816568 0.41319444 0.45013850
## 269 HiC_scaffold_21 22257737 0.42000000 0.29336735 0.35123967 0.35265306
## 270 HiC_scaffold_21 22644667 0.48816568 0.49704142 0.46875000 0.48753463
## 271 HiC_scaffold_21 22644673 0.48816568 0.49704142 0.46875000 0.48753463
## 272 HiC_scaffold_21 22666888 0.43388430 0.46875000 0.44444444 0.49632653
## 273 HiC_scaffold_21 23905416 0.37500000 0.50000000 0.37500000 0.45061224
## 274 HiC_scaffold_21 23981651 0.35123967 0.47337278 0.49586777 0.45918367
## 275 HiC_scaffold_21 24287068 0.35123967 0.48979592 0.43388430 0.44444444
## 276 HiC_scaffold_21 30798434 0.50000000 0.49777778 0.44444444 0.49382716
## 277 HiC_scaffold_21 35006232 0.34567901 0.26035503 0.47337278 0.38204082
## 278 HiC_scaffold_21 35779294 0.46875000 0.49777778 0.37500000 0.47896121
## 279 HiC_scaffold_22 124910 0.50000000 0.35502959 0.49586777 0.48611111
## 280 HiC_scaffold_22 751023 0.39349112 0.31065089 0.48000000 0.40123457
## 281 HiC_scaffold_22 1042644 0.35123967 0.48816568 0.48611111 0.46141975
## 282 HiC_scaffold_22 1044708 0.48979592 0.49652778 0.32000000 0.46875000
## 283 HiC_scaffold_22 2174911 0.44444444 0.45266272 0.37500000 0.49853908
## 284 HiC_scaffold_22 3431122 0.42603550 0.26035503 0.48347107 0.44740687
## 285 HiC_scaffold_22 3446787 0.49704142 0.49777778 0.49704142 0.49732302
## 286 HiC_scaffold_22 3451756 0.41319444 0.43388430 0.44444444 0.43102041
## 287 HiC_scaffold_22 3720435 0.50000000 0.45918367 0.27777778 0.44444444
## 288 HiC_scaffold_22 4065466 0.45918367 0.35123967 0.45500000 0.43102041
## 289 HiC_scaffold_22 4739889 0.31065089 0.45867769 0.32986111 0.38618827
## 290 HiC_scaffold_22 4918263 0.45500000 0.45918367 0.42603550 0.49415632
## 291 HiC_scaffold_22 5750008 0.20414201 0.13265306 0.27777778 0.19753086
## 292 HiC_scaffold_22 5769942 0.42603550 0.46875000 0.42000000 0.44122449
## 293 HiC_scaffold_22 28264522 0.45266272 0.35123967 0.32986111 0.49035494
## 294 HiC_scaffold_22 28265115 0.46280992 0.49652778 0.50000000 0.49836735
## 295 HiC_scaffold_22 29205851 0.36776860 0.35069444 0.07986111 0.27632653
## 296 HiC_scaffold_22 29822340 0.35123967 0.39111111 0.18000000 0.32986111
## 297 HiC_scaffold_22 30797357 0.50000000 0.49777778 0.50000000 0.49959184
## 298 HiC_scaffold_22 32042610 0.16528926 0.32000000 0.08677686 0.21365961
## 299 HiC_scaffold_23 11215327 0.37500000 0.47337278 0.46875000 0.44740687
## 300 HiC_scaffold_23 27081333 0.45266272 0.49704142 0.46875000 0.48753463
## 301 HiC_scaffold_23 28672255 0.44444444 0.50000000 0.35502959 0.45580716
## 302 HiC_scaffold_23 29218828 0.49586777 0.47337278 0.46875000 0.49961420
## 303 HiC_scaffold_23 32528768 0.40816327 0.47704082 0.39669421 0.47896121
## 304 HiC_scaffold_23 32669383 0.47337278 0.49652778 0.37500000 0.48000000
## 305 HiC_scaffold_23 33199663 0.35502959 0.45918367 0.45266272 0.42968750
## 306 HiC_scaffold_23 33245843 0.43388430 0.49586777 0.42603550 0.49836735
## 307 HiC_scaffold_23 40824545 0.50000000 0.50000000 0.48611111 0.49836735
## 308 HiC_scaffold_23 41504669 0.46280992 0.49111111 0.46875000 0.47783934
## 309 HiC_scaffold_24 16622654 0.35502959 0.45266272 0.48000000 0.43479938
## 310 HiC_scaffold_24 16622681 0.35502959 0.47337278 0.46875000 0.44148199
## 311 HiC_scaffold_24 19851560 0.27777778 0.27777778 0.46280992 0.35265306
## 312 HiC_scaffold_24 20590563 0.49652778 0.42603550 0.29752066 0.45331790
## 313 HiC_scaffold_24 27745754 0.49500000 0.50000000 0.49586777 0.49836735
## 314 HiC_scaffold_24 28763699 0.29752066 0.32000000 0.18000000 0.27777778
## 315 HiC_scaffold_24 28763703 0.23553719 0.23111111 0.10493827 0.20244898
## 316 HiC_scaffold_25 4135969 0.48347107 0.42000000 0.35123967 0.42841490
## 317 HiC_scaffold_25 4201677 0.48611111 0.49652778 0.29752066 0.45918367
## 318 HiC_scaffold_25 5872831 0.37500000 0.48611111 0.50000000 0.46875000
## 319 HiC_scaffold_25 6879627 0.47337278 0.50000000 0.43388430 0.48000000
## 320 HiC_scaffold_25 8172813 0.48816568 0.14201183 0.35123967 0.36815194
## 321 HiC_scaffold_25 9969507 0.43388430 0.49744898 0.50000000 0.49035494
## 322 HiC_scaffold_25 10691336 0.50000000 0.49744898 0.37500000 0.48530612
## 323 HiC_scaffold_25 21286462 0.50000000 0.48979592 0.48347107 0.50000000
## 324 HiC_scaffold_26 4086662 0.45500000 0.45266272 0.41319444 0.44122449
## 325 HiC_scaffold_26 7539671 0.46280992 0.50000000 0.46875000 0.48611111
## 326 HiC_scaffold_26 8348511 0.39349112 0.50000000 0.19753086 0.43102041
## 327 HiC_scaffold_26 9043748 0.44444444 0.46875000 0.43388430 0.45061224
## 328 HiC_scaffold_26 9045655 0.49652778 0.46280992 0.48611111 0.49346939
## 329 HiC_scaffold_26 11253181 0.49704142 0.29336735 0.50000000 0.46712689
## 330 HiC_scaffold_26 17828344 0.09500000 0.29336735 0.16528926 0.20244898
## 331 HiC_scaffold_26 17932520 0.13265306 0.32986111 0.00000000 0.17554012
## 332 HiC_scaffold_26 17941459 0.40816327 0.37500000 0.48611111 0.43213296
## 333 HiC_scaffold_26 17960877 0.07396450 0.26035503 0.08677686 0.14901388
## 334 HiC_scaffold_26 18284041 0.46280992 0.40816327 0.37500000 0.42000000
## 335 HiC_scaffold_26 18288701 0.07986111 0.08677686 0.37500000 0.20244898
## 336 HiC_scaffold_26 18294422 0.48816568 0.49652778 0.48347107 0.49652778
## 337 HiC_scaffold_26 21307365 0.46875000 0.45918367 0.46280992 0.46347699
## 338 HiC_scaffold_26 22159924 0.32986111 0.31065089 0.08677686 0.25887346
## 339 HiC_scaffold_26 22161535 0.40277778 0.46875000 0.55785124 0.48938776
## 340 HiC_scaffold_26 24794176 0.48611111 0.26035503 0.32986111 0.38166545
## 341 HiC_scaffold_26 28538113 0.41319444 0.39349112 0.49500000 0.45918367
## 342 HiC_scaffold_26 29031357 0.14201183 0.00000000 0.18000000 0.10226443
## 343 HiC_scaffold_26 29163462 0.48000000 0.40816327 0.39669421 0.43102041
## 344 HiC_scaffold_26 42631018 0.46875000 0.49744898 0.49500000 0.49035494
## 345 HiC_scaffold_26 42634814 0.44444444 0.45266272 0.37500000 0.43102041
## 346 HiC_scaffold_26 43483190 0.39349112 0.32986111 0.50000000 0.43102041
## 347 HiC_scaffold_26 49955889 0.41319444 0.47337278 0.43388430 0.44444444
## 348 HiC_scaffold_26 58342510 0.41319444 0.31065089 0.50000000 0.49632653
## 349 HiC_scaffold_27 1496120 0.50000000 0.37500000 0.49652778 0.47530864
## 350 HiC_scaffold_27 1947057 0.49704142 0.33673469 0.43388430 0.44148199
## 351 HiC_scaffold_27 2359058 0.40123457 0.47704082 0.49652778 0.47387755
## 352 HiC_scaffold_27 2699645 0.32000000 0.47704082 0.49586777 0.47387755
## 353 HiC_scaffold_27 4425475 0.48347107 0.45918367 0.39669421 0.48109568
## 354 HiC_scaffold_27 7539469 0.40051020 0.55500000 0.48347107 0.48938776
## 355 HiC_scaffold_27 7777122 0.35123967 0.49744898 0.35123967 0.43479938
## 356 HiC_scaffold_27 16657070 0.48816568 0.48979592 0.49586777 0.49134349
## 357 HiC_scaffold_27 24539255 0.50000000 0.49652778 0.49218750 0.49836735
## 358 HiC_scaffold_27 34642359 0.49586777 0.33673469 0.29752066 0.42438272
## 359 HiC_scaffold_27 34647277 0.35714286 0.33777778 0.27777778 0.33313504
## 360 HiC_scaffold_27 35380535 0.23553719 0.13265306 0.09500000 0.15673469
## 361 HiC_scaffold_27 35383230 0.44444444 0.32986111 0.46280992 0.47387755
## 362 HiC_scaffold_28 21261390 0.42603550 0.39349112 0.45500000 0.47530864
## 363 HiC_scaffold_28 24490442 0.46875000 0.43622449 0.49500000 0.46875000
## 364 HiC_scaffold_28 25601927 0.47704082 0.39349112 0.49382716 0.47530864
## 365 HiC_scaffold_28 31793968 0.58641975 0.35777778 0.54132231 0.49346939
## 366 HiC_scaffold_28 32126687 0.24380165 0.49777778 0.18000000 0.34915123
## 367 HiC_scaffold_28 34779518 0.48611111 0.37500000 0.35502959 0.41782323
## 368 HiC_scaffold_28 36042491 0.49652778 0.48000000 0.44444444 0.47896121
## 369 HiC_scaffold_28 36692361 0.35502959 0.40816327 0.49218750 0.42000000
## 370 HiC_scaffold_28 38672993 0.43622449 0.48816568 0.48000000 0.47041636
## 371 HiC_scaffold_28 39640526 0.25500000 0.47337278 0.50000000 0.49346939
## 372 HiC_scaffold_28 40169242 0.49744898 0.47704082 0.50000000 0.49853908
## 373 HiC_scaffold_28 41059640 0.14201183 0.13265306 0.00000000 0.10493827
## 374 HiC_scaffold_28 42514830 0.48611111 0.43622449 0.39669421 0.44740687
## 375 HiC_scaffold_28 42601570 0.46280992 0.37500000 0.49586777 0.45331790
## 376 HiC_scaffold_28 42601585 0.48347107 0.47337278 0.31065089 0.43827611
## 377 HiC_scaffold_28 43018803 0.49500000 0.46875000 0.47337278 0.48979592
## 378 HiC_scaffold_28 43036165 0.48000000 0.49704142 0.39349112 0.46875000
## 379 HiC_scaffold_29 344317 0.45500000 0.48000000 0.50000000 0.48611111
## 380 HiC_scaffold_29 3811176 0.48611111 0.47337278 0.35123967 0.48109568
## 381 HiC_scaffold_29 6073993 0.49500000 0.47337278 0.49652778 0.48979592
## 382 HiC_scaffold_29 6415222 0.35502959 0.13265306 0.24380165 0.25727147
## 383 HiC_scaffold_29 8224424 0.31065089 0.50000000 0.46280992 0.45061224
## 384 HiC_scaffold_29 11153624 0.47704082 0.49652778 0.45500000 0.49035494
## 385 HiC_scaffold_29 11153712 0.48347107 0.47337278 0.48611111 0.48109568
## 386 HiC_scaffold_29 11167966 0.48000000 0.49704142 0.42000000 0.49861496
## 387 HiC_scaffold_29 11491468 0.41319444 0.45266272 0.37500000 0.42000000
## 388 HiC_scaffold_29 12103558 0.49652778 0.48347107 0.49652778 0.50000000
## 389 HiC_scaffold_29 14279322 0.45500000 0.39111111 0.46875000 0.43827611
## 390 HiC_scaffold_29 14913907 0.48347107 0.45918367 0.37500000 0.45061224
## 391 HiC_scaffold_29 16378276 0.15277778 0.16528926 0.15277778 0.15673469
## 392 HiC_scaffold_29 20635937 0.48347107 0.44444444 0.48816568 0.47530864
## 393 HiC_scaffold_29 20636787 0.29752066 0.47337278 0.49652778 0.45331790
## 394 HiC_scaffold_29 22560215 0.46280992 0.45918367 0.32000000 0.43102041
## 395 HiC_scaffold_29 22561144 0.16528926 0.47337278 0.39669421 0.38204082
## 396 HiC_scaffold_29 24017849 0.27777778 0.29166667 0.48611111 0.36419753
## 397 HiC_scaffold_29 31603590 0.21875000 0.47704082 0.49500000 0.43479938
## 398 HiC_scaffold_3 21670751 0.48000000 0.49704142 0.27777778 0.48000000
## 399 HiC_scaffold_3 24747014 0.45500000 0.43622449 0.49704142 0.47041636
## 400 HiC_scaffold_3 27861792 0.39349112 0.41319444 0.48816568 0.44148199
## 401 HiC_scaffold_3 28057869 0.49586777 0.47337278 0.48347107 0.49836735
## 402 HiC_scaffold_3 28441436 0.49500000 0.48979592 0.50000000 0.49632653
## 403 HiC_scaffold_3 28694380 0.46280992 0.49704142 0.46280992 0.48000000
## 404 HiC_scaffold_3 31361023 0.48816568 0.49777778 0.50000000 0.49671293
## 405 HiC_scaffold_3 31960572 0.48000000 0.49744898 0.44444444 0.49035494
## 406 HiC_scaffold_3 32157169 0.44444444 0.41319444 0.50000000 0.47041636
## 407 HiC_scaffold_3 32159152 0.49652778 0.49744898 0.40123457 0.49836735
## 408 HiC_scaffold_3 34124237 0.00000000 0.49111111 0.48347107 0.43102041
## 409 HiC_scaffold_30 14199802 0.49586777 0.49704142 0.48347107 0.49836735
## 410 HiC_scaffold_30 16052331 0.37500000 0.39349112 0.29752066 0.36072531
## 411 HiC_scaffold_30 19914075 0.27777778 0.32986111 0.27777778 0.29591049
## 412 HiC_scaffold_30 20688783 0.48611111 0.49704142 0.48347107 0.49035494
## 413 HiC_scaffold_30 21446076 0.29166667 0.33777778 0.00000000 0.23142669
## 414 HiC_scaffold_30 21598563 0.42603550 0.42000000 0.41319444 0.42000000
## 415 HiC_scaffold_30 22155728 0.29752066 0.48816568 0.46280992 0.44122449
## 416 HiC_scaffold_31 687411 0.49652778 0.37500000 0.40123457 0.44122449
## 417 HiC_scaffold_31 3224722 0.37500000 0.47704082 0.42000000 0.43479938
## 418 HiC_scaffold_31 3574854 0.42603550 0.39349112 0.44444444 0.42000000
## 419 HiC_scaffold_31 5899551 0.15277778 0.27777778 0.16528926 0.20244898
## 420 HiC_scaffold_31 5911491 0.49500000 0.42603550 0.41319444 0.45061224
## 421 HiC_scaffold_31 6297680 0.49704142 0.45918367 0.47530864 0.48109568
## 422 HiC_scaffold_31 12394016 0.47337278 0.46875000 0.49500000 0.49959184
## 423 HiC_scaffold_31 12394040 0.49652778 0.31065089 0.43388430 0.43479938
## 424 HiC_scaffold_31 18612650 0.48347107 0.49704142 0.44444444 0.49652778
## 425 HiC_scaffold_32 4446859 0.49704142 0.49652778 0.42000000 0.49346939
## 426 HiC_scaffold_32 5274796 0.27777778 0.49704142 0.43388430 0.43479938
## 427 HiC_scaffold_32 5275108 0.44444444 0.49777778 0.46875000 0.49961420
## 428 HiC_scaffold_32 5282358 0.49500000 0.49704142 0.27777778 0.47387755
## 429 HiC_scaffold_32 5450203 0.47530864 0.19132653 0.37500000 0.35265306
## 430 HiC_scaffold_32 44200178 0.49218750 0.40816327 0.48816568 0.49632653
## 431 HiC_scaffold_33 638523 0.50000000 0.42000000 0.48347107 0.47387755
## 432 HiC_scaffold_33 44489563 0.44444444 0.43622449 0.46875000 0.45061224
## 433 HiC_scaffold_33 44489988 0.50000000 0.49652778 0.42603550 0.48530612
## 434 HiC_scaffold_33 47080180 0.44444444 0.42000000 0.46875000 0.44444444
## 435 HiC_scaffold_33 47495907 0.32986111 0.49704142 0.48000000 0.47387755
## 436 HiC_scaffold_33 51865876 0.27777778 0.37500000 0.50000000 0.42000000
## 437 HiC_scaffold_34 1096982 0.42000000 0.44444444 0.45266272 0.44148199
## 438 HiC_scaffold_34 6091943 0.27777778 0.48979592 0.34567901 0.39993075
## 439 HiC_scaffold_34 6100160 0.48816568 0.49586777 0.29752066 0.45918367
## 440 HiC_scaffold_34 24368584 0.14201183 0.49586777 0.50000000 0.46347699
## 441 HiC_scaffold_35 3233120 0.45266272 0.50000000 0.49652778 0.49652778
## 442 HiC_scaffold_35 3253574 0.44444444 0.46875000 0.46875000 0.49382716
## 443 HiC_scaffold_35 5512296 0.44444444 0.44444444 0.41319444 0.43479938
## 444 HiC_scaffold_35 15114788 0.43388430 0.39349112 0.48347107 0.44122449
## 445 HiC_scaffold_35 21214090 0.47704082 0.41319444 0.35502959 0.42603550
## 446 HiC_scaffold_35 21462564 0.42603550 0.46280992 0.35123967 0.42000000
## 447 HiC_scaffold_35 22746783 0.48611111 0.39111111 0.47530864 0.48109568
## 448 HiC_scaffold_35 22747085 0.50000000 0.48816568 0.44444444 0.48979592
## 449 HiC_scaffold_35 23059580 0.46280992 0.48816568 0.46875000 0.47530864
## 450 HiC_scaffold_35 23158882 0.46875000 0.31065089 0.48347107 0.48109568
## 451 HiC_scaffold_35 23261143 0.00000000 0.19132653 0.23553719 0.15673469
## 452 HiC_scaffold_35 24403602 0.48816568 0.48611111 0.43388430 0.47530864
## 453 HiC_scaffold_35 24403620 0.48816568 0.45266272 0.34567901 0.45061224
## 454 HiC_scaffold_35 24993986 0.45500000 0.42000000 0.25500000 0.39551020
## 455 HiC_scaffold_35 24993998 0.47530864 0.49744898 0.50000000 0.49959184
## 456 HiC_scaffold_36 1538038 0.49652778 0.45266272 0.48000000 0.48979592
## 457 HiC_scaffold_36 2464728 0.31065089 0.44444444 0.49652778 0.43827611
## 458 HiC_scaffold_36 5489050 0.37500000 0.48979592 0.41319444 0.44148199
## 459 HiC_scaffold_36 9673981 0.46444444 0.40816327 0.49382716 0.45810249
## 460 HiC_scaffold_36 9674127 0.29752066 0.13265306 0.26035503 0.22853186
## 461 HiC_scaffold_36 9674756 0.00000000 0.18000000 0.27777778 0.18000000
## 462 HiC_scaffold_36 9676329 0.21875000 0.13265306 0.08677686 0.14901388
## 463 HiC_scaffold_36 12304516 0.49586777 0.26035503 0.48611111 0.47530864
## 464 HiC_scaffold_36 12515555 0.49652778 0.49704142 0.48611111 0.50000000
## 465 HiC_scaffold_36 13092647 0.50000000 0.23553719 0.49586777 0.48000000
## 466 HiC_scaffold_36 13766994 0.35502959 0.42000000 0.48611111 0.43102041
## 467 HiC_scaffold_36 14567741 0.44444444 0.35502959 0.43388430 0.41319444
## 468 HiC_scaffold_36 15530578 0.09500000 0.19132653 0.00000000 0.10775510
## 469 HiC_scaffold_37 679894 0.27777778 0.20414201 0.18000000 0.22408163
## 470 HiC_scaffold_37 916693 0.48816568 0.35123967 0.48347107 0.45918367
## 471 HiC_scaffold_37 928146 0.49500000 0.47704082 0.48347107 0.49346939
## 472 HiC_scaffold_37 1256768 0.45266272 0.46875000 0.25500000 0.42000000
## 473 HiC_scaffold_37 1270034 0.49586777 0.29336735 0.37500000 0.40816327
## 474 HiC_scaffold_37 1770997 0.09500000 0.40051020 0.15277778 0.24884259
## 475 HiC_scaffold_37 1798298 0.48611111 0.37500000 0.50000000 0.49346939
## 476 HiC_scaffold_37 2010342 0.46280992 0.45266272 0.49652778 0.49845679
## 477 HiC_scaffold_37 2141526 0.35123967 0.47704082 0.37500000 0.42000000
## 478 HiC_scaffold_37 3952190 0.42603550 0.42603550 0.44444444 0.43213296
## 479 HiC_scaffold_37 3952215 0.42603550 0.43388430 0.41319444 0.42438272
## 480 HiC_scaffold_37 9915037 0.46280992 0.47337278 0.27777778 0.42438272
## 481 HiC_scaffold_38 5383430 0.45918367 0.45266272 0.32000000 0.42841490
## 482 HiC_scaffold_38 5668363 0.44444444 0.44444444 0.46280992 0.45061224
## 483 HiC_scaffold_38 5879849 0.44444444 0.44444444 0.41319444 0.43479938
## 484 HiC_scaffold_38 5880155 0.46875000 0.49704142 0.46280992 0.48109568
## 485 HiC_scaffold_38 10612790 0.49704142 0.42603550 0.49586777 0.48210373
## 486 HiC_scaffold_38 11940240 0.63223140 0.59777778 0.62809917 0.62198685
## 487 HiC_scaffold_38 12878826 0.44444444 0.42603550 0.48000000 0.45061224
## 488 HiC_scaffold_38 12959698 0.46280992 0.48816568 0.46875000 0.49382716
## 489 HiC_scaffold_38 13087368 0.27777778 0.00000000 0.34567901 0.20244898
## 490 HiC_scaffold_38 13480648 0.49586777 0.48816568 0.48347107 0.49959184
## 491 HiC_scaffold_38 13965243 0.35123967 0.00000000 0.07986111 0.15277778
## 492 HiC_scaffold_38 14089955 0.49652778 0.49744898 0.32000000 0.47530864
## 493 HiC_scaffold_38 14408072 0.39349112 0.50000000 0.46280992 0.46693878
## 494 HiC_scaffold_38 14931216 0.43622449 0.50000000 0.48611111 0.48303324
## 495 HiC_scaffold_38 14978356 0.27777778 0.49704142 0.50000000 0.47041636
## 496 HiC_scaffold_38 14978367 0.23553719 0.49704142 0.50000000 0.46875000
## 497 HiC_scaffold_38 15292863 0.29752066 0.27777778 0.40123457 0.43102041
## 498 HiC_scaffold_38 15306135 0.42000000 0.46444444 0.48816568 0.48753463
## 499 HiC_scaffold_38 16077506 0.48816568 0.45266272 0.50000000 0.49836735
## 500 HiC_scaffold_38 16138965 0.44444444 0.42603550 0.29752066 0.40123457
## 501 HiC_scaffold_38 16226040 0.32986111 0.45266272 0.29752066 0.37500000
## 502 HiC_scaffold_39 1393769 0.42603550 0.40816327 0.46280992 0.43213296
## 503 HiC_scaffold_39 2014970 0.45500000 0.49744898 0.27777778 0.44444444
## 504 HiC_scaffold_39 2014982 0.43388430 0.50000000 0.27777778 0.44740687
## 505 HiC_scaffold_39 2014985 0.43388430 0.50000000 0.27777778 0.45013850
## 506 HiC_scaffold_39 2426443 0.42603550 0.45266272 0.40123457 0.43102041
## 507 HiC_scaffold_39 2485330 0.47337278 0.42603550 0.49586777 0.48210373
## 508 HiC_scaffold_39 3350506 0.44444444 0.45266272 0.39669421 0.49035494
## 509 HiC_scaffold_39 5897388 0.32000000 0.42603550 0.46875000 0.42000000
## 510 HiC_scaffold_39 17631133 0.49382716 0.49777778 0.23553719 0.45918367
## 511 HiC_scaffold_4 12107187 0.37500000 0.50000000 0.46280992 0.45918367
## 512 HiC_scaffold_4 18241670 0.20414201 0.35502959 0.23553719 0.27173119
## 513 HiC_scaffold_4 18241723 0.20414201 0.14201183 0.16528926 0.17129291
## 514 HiC_scaffold_4 22418566 0.37500000 0.50000000 0.49652778 0.49086925
## 515 HiC_scaffold_4 27899990 0.39669421 0.43622449 0.49500000 0.45061224
## 516 HiC_scaffold_4 35575118 0.34567901 0.49777778 0.37500000 0.44444444
## 517 HiC_scaffold_4 38000967 0.00000000 0.26035503 0.27777778 0.18836565
## 518 HiC_scaffold_4 50654021 0.50000000 0.35502959 0.47530864 0.46693878
## 519 HiC_scaffold_40 2243415 0.37500000 0.48816568 0.49500000 0.48000000
## 520 HiC_scaffold_40 3000572 0.46875000 0.48000000 0.29752066 0.44148199
## 521 HiC_scaffold_40 3014177 0.29752066 0.13265306 0.25500000 0.22408163
## 522 HiC_scaffold_40 3027900 0.40816327 0.48347107 0.46280992 0.45331790
## 523 HiC_scaffold_40 3143834 0.39349112 0.42603550 0.46875000 0.43213296
## 524 HiC_scaffold_40 3843942 0.50255102 0.48724490 0.40123457 0.48392988
## 525 HiC_scaffold_40 3847620 0.37500000 0.48611111 0.39669421 0.43102041
## 526 HiC_scaffold_40 3891007 0.48979592 0.32986111 0.50000000 0.49035494
## 527 HiC_scaffold_40 3920667 0.46000000 0.47337278 0.15277778 0.41142857
## 528 HiC_scaffold_40 4177963 0.39669421 0.39349112 0.48816568 0.43827611
## 529 HiC_scaffold_40 4819107 0.48000000 0.49744898 0.43388430 0.49632653
## 530 HiC_scaffold_40 4819834 0.37500000 0.43622449 0.49586777 0.49959184
## 531 HiC_scaffold_40 5788271 0.46875000 0.49652778 0.49586777 0.48979592
## 532 HiC_scaffold_40 5965269 0.50000000 0.49777778 0.32986111 0.47530864
## 533 HiC_scaffold_40 6204154 0.45266272 0.49652778 0.39669421 0.47530864
## 534 HiC_scaffold_40 8387917 0.50000000 0.49744898 0.49586777 0.50000000
## 535 HiC_scaffold_41 3235384 0.37869822 0.26035503 0.08677686 0.26406136
## 536 HiC_scaffold_41 3583000 0.45500000 0.24489796 0.29752066 0.42000000
## 537 HiC_scaffold_41 5334504 0.26035503 0.07986111 0.15277778 0.17129291
## 538 HiC_scaffold_41 5387631 0.48611111 0.43622449 0.50000000 0.49632653
## 539 HiC_scaffold_41 6423426 0.50000000 0.41319444 0.46280992 0.47387755
## 540 HiC_scaffold_41 14359947 0.47337278 0.42000000 0.41319444 0.44122449
## 541 HiC_scaffold_41 24007593 0.42000000 0.43622449 0.46875000 0.44444444
## 542 HiC_scaffold_41 26225447 0.44444444 0.48816568 0.48000000 0.47387755
## 543 HiC_scaffold_41 28626484 0.18000000 0.45918367 0.46280992 0.40816327
## 544 HiC_scaffold_41 28660620 0.35123967 0.49744898 0.46280992 0.46141975
## 545 HiC_scaffold_41 31007688 0.37500000 0.47337278 0.42000000 0.48979592
## 546 HiC_scaffold_42 1131084 0.41319444 0.49652778 0.48611111 0.49845679
## 547 HiC_scaffold_42 1818523 0.49586777 0.29336735 0.42000000 0.42000000
## 548 HiC_scaffold_42 2165002 0.45486111 0.07396450 0.23553719 0.26967593
## 549 HiC_scaffold_42 2711332 0.48347107 0.39349112 0.43388430 0.44122449
## 550 HiC_scaffold_42 6142699 0.48347107 0.47337278 0.35123967 0.45061224
## 551 HiC_scaffold_42 6744976 0.49586777 0.48979592 0.49500000 0.49836735
## 552 HiC_scaffold_42 8066919 0.43622449 0.49704142 0.46875000 0.48389218
## 553 HiC_scaffold_42 8068292 0.48816568 0.46875000 0.48347107 0.49652778
## 554 HiC_scaffold_42 12487888 0.49704142 0.46875000 0.45500000 0.48000000
## 555 HiC_scaffold_42 41366687 0.42603550 0.35123967 0.27777778 0.36072531
## 556 HiC_scaffold_42 47313337 0.00000000 0.35714286 0.35069444 0.25147929
## 557 HiC_scaffold_42 47313338 0.00000000 0.33777778 0.35069444 0.24593750
## 558 HiC_scaffold_42 50784971 0.48347107 0.45918367 0.48611111 0.47662527
## 559 HiC_scaffold_42 50784977 0.46875000 0.47337278 0.49586777 0.48109568
## 560 HiC_scaffold_42 50784981 0.50000000 0.50000000 0.50000000 0.50000000
## 561 HiC_scaffold_42 51916989 0.00000000 0.26035503 0.00000000 0.10775510
## 562 HiC_scaffold_43 3842003 0.06887755 0.07986111 0.18000000 0.10493827
## 563 HiC_scaffold_43 14140861 0.49500000 0.48979592 0.50000000 0.49632653
## 564 HiC_scaffold_43 15053605 0.15277778 0.06887755 0.19753086 0.13265306
## 565 HiC_scaffold_43 17289945 0.47530864 0.48979592 0.37500000 0.45918367
## 566 HiC_scaffold_43 29967704 0.49704142 0.49382716 0.50000000 0.50000000
## 567 HiC_scaffold_43 35745831 0.50000000 0.50000000 0.48000000 0.49853908
## 568 HiC_scaffold_43 37627949 0.49586777 0.49111111 0.46280992 0.48685172
## 569 HiC_scaffold_43 37628126 0.48611111 0.50000000 0.50000000 0.49836735
## 570 HiC_scaffold_43 44017118 0.35502959 0.48816568 0.39669421 0.42841490
## 571 HiC_scaffold_43 55124138 0.41319444 0.48979592 0.50000000 0.48303324
## 572 HiC_scaffold_43 60107326 0.48347107 0.45918367 0.37500000 0.49632653
## 573 HiC_scaffold_43 61359386 0.48816568 0.35502959 0.49500000 0.46141975
## 574 HiC_scaffold_43 61702593 0.49704142 0.39111111 0.39669421 0.44444444
## 575 HiC_scaffold_43 61702606 0.49704142 0.39111111 0.39669421 0.44444444
## 576 HiC_scaffold_43 61702721 0.44444444 0.48979592 0.50000000 0.48979592
## 577 HiC_scaffold_43 61702738 0.48611111 0.48816568 0.25500000 0.45061224
## 578 HiC_scaffold_43 62511703 0.49777778 0.37500000 0.47530864 0.46875000
## 579 HiC_scaffold_43 64069457 0.23553719 0.49704142 0.44444444 0.43479938
## 580 HiC_scaffold_43 64577269 0.00000000 0.37500000 0.39669421 0.29591049
## 581 HiC_scaffold_44 1920144 0.49652778 0.49111111 0.50000000 0.49704142
## 582 HiC_scaffold_44 2148035 0.39349112 0.40816327 0.49500000 0.45580716
## 583 HiC_scaffold_44 2568167 0.37500000 0.47337278 0.41319444 0.49632653
## 584 HiC_scaffold_45 4180070 0.24489796 0.46875000 0.44444444 0.39551020
## 585 HiC_scaffold_45 4797754 0.57397959 0.64462810 0.48000000 0.60122449
## 586 HiC_scaffold_45 5911123 0.49744898 0.48347107 0.49500000 0.49346939
## 587 HiC_scaffold_45 6958990 0.35123967 0.48000000 0.34567901 0.42000000
## 588 HiC_scaffold_45 8516216 0.27777778 0.31065089 0.39669421 0.32986111
## 589 HiC_scaffold_45 10191213 0.46280992 0.46444444 0.47530864 0.46693878
## 590 HiC_scaffold_45 12005885 0.50000000 0.49744898 0.46280992 0.49382716
## 591 HiC_scaffold_45 12006766 0.49500000 0.43622449 0.49586777 0.49632653
## 592 HiC_scaffold_45 24736172 0.45918367 0.42603550 0.48347107 0.45810249
## 593 HiC_scaffold_45 24739830 0.50000000 0.49704142 0.41319444 0.48816568
## 594 HiC_scaffold_46 9691567 0.31065089 0.50000000 0.48347107 0.48611111
## 595 HiC_scaffold_46 17380257 0.49500000 0.47704082 0.45266272 0.47662527
## 596 HiC_scaffold_46 18387147 0.50000000 0.37500000 0.25500000 0.42438272
## 597 HiC_scaffold_46 37092355 0.48000000 0.37500000 0.49586777 0.47387755
## 598 HiC_scaffold_46 39183624 0.42603550 0.49652778 0.49586777 0.48109568
## 599 HiC_scaffold_46 39390547 0.49652778 0.31065089 0.45500000 0.44122449
## 600 HiC_scaffold_46 42964941 0.37500000 0.48000000 0.49382716 0.47530864
## 601 HiC_scaffold_46 42986653 0.48347107 0.37500000 0.45500000 0.48530612
## 602 HiC_scaffold_46 52074364 0.32986111 0.06887755 0.25500000 0.21875000
## 603 HiC_scaffold_46 54255667 0.26035503 0.14201183 0.23553719 0.21365961
## 604 HiC_scaffold_47 3750532 0.32000000 0.24489796 0.39669421 0.46693878
## 605 HiC_scaffold_47 3751345 0.37500000 0.43388430 0.50000000 0.49652778
## 606 HiC_scaffold_47 15400639 0.18000000 0.33673469 0.07986111 0.21875000
## 607 HiC_scaffold_47 24072414 0.43622449 0.48611111 0.49652778 0.49445983
## 608 HiC_scaffold_47 25273825 0.46875000 0.49704142 0.49500000 0.48979592
## 609 HiC_scaffold_48 8752752 0.45486111 0.41777778 0.21875000 0.39714286
## 610 HiC_scaffold_48 10765920 0.50000000 0.24489796 0.43388430 0.42841490
## 611 HiC_scaffold_48 16077918 0.48347107 0.40816327 0.49586777 0.49652778
## 612 HiC_scaffold_48 16077940 0.45266272 0.44444444 0.39669421 0.43556870
## 613 HiC_scaffold_48 16411609 0.18000000 0.40816327 0.48347107 0.39551020
## 614 HiC_scaffold_48 19972580 0.48979592 0.48611111 0.48611111 0.49861496
## 615 HiC_scaffold_48 23493079 0.49652778 0.48000000 0.35502959 0.47468750
## 616 HiC_scaffold_48 23597210 0.45266272 0.49704142 0.29752066 0.46347699
## 617 HiC_scaffold_48 24478493 0.39669421 0.43622449 0.42000000 0.42000000
## 618 HiC_scaffold_48 24881148 0.41319444 0.46280992 0.50000000 0.49845679
## 619 HiC_scaffold_48 25865723 0.15277778 0.08677686 0.31065089 0.19753086
## 620 HiC_scaffold_48 25984068 0.49652778 0.48816568 0.48000000 0.48979592
## 621 HiC_scaffold_48 25989079 0.48347107 0.37500000 0.49652778 0.46693878
## 622 HiC_scaffold_48 30601375 0.49586777 0.50000000 0.39669421 0.48530612
## 623 HiC_scaffold_48 31662115 0.25500000 0.33673469 0.29752066 0.30244898
## 624 HiC_scaffold_48 41971562 0.50000000 0.49586777 0.48816568 0.49959184
## 625 HiC_scaffold_49 3392801 0.44444444 0.46875000 0.32986111 0.42438272
## 626 HiC_scaffold_49 6101692 0.07986111 0.23553719 0.15277778 0.15673469
## 627 HiC_scaffold_49 7996315 0.48611111 0.35502959 0.46875000 0.44740687
## 628 HiC_scaffold_49 9470474 0.42603550 0.48816568 0.35123967 0.43827611
## 629 HiC_scaffold_49 9886007 0.39111111 0.48000000 0.49652778 0.48685172
## 630 HiC_scaffold_49 12592113 0.39669421 0.44444444 0.41319444 0.42000000
## 631 HiC_scaffold_49 12741575 0.35502959 0.49586777 0.48347107 0.48530612
## 632 HiC_scaffold_49 15135019 0.08677686 0.00000000 0.46280992 0.22408163
## 633 HiC_scaffold_49 25906219 0.39669421 0.42603550 0.48347107 0.44122449
## 634 HiC_scaffold_49 26614199 0.49382716 0.49777778 0.37500000 0.48611111
## 635 HiC_scaffold_49 26655554 0.44444444 0.42603550 0.46875000 0.44740687
## 636 HiC_scaffold_49 37568341 0.49500000 0.47337278 0.49652778 0.49959184
## 637 HiC_scaffold_49 37568353 0.49500000 0.47337278 0.49652778 0.49959184
## 638 HiC_scaffold_49 40002255 0.43622449 0.49704142 0.18000000 0.42841490
## 639 HiC_scaffold_49 40003229 0.49652778 0.42000000 0.48000000 0.47041636
## 640 HiC_scaffold_49 42966376 0.46280992 0.49777778 0.45500000 0.49035494
## 641 HiC_scaffold_5 801252 0.44444444 0.46875000 0.49586777 0.49836735
## 642 HiC_scaffold_5 1446603 0.50000000 0.49111111 0.49500000 0.49652778
## 643 HiC_scaffold_5 1446611 0.50000000 0.49111111 0.49500000 0.49652778
## 644 HiC_scaffold_5 1530759 0.42000000 0.48979592 0.41319444 0.49652778
## 645 HiC_scaffold_5 1539275 0.25510204 0.13265306 0.29166667 0.22625000
## 646 HiC_scaffold_5 1789576 0.48347107 0.42000000 0.44444444 0.45061224
## 647 HiC_scaffold_5 1808197 0.49704142 0.37500000 0.50000000 0.48979592
## 648 HiC_scaffold_5 1808204 0.49704142 0.29336735 0.48000000 0.44740687
## 649 HiC_scaffold_5 1943895 0.39349112 0.31065089 0.34567901 0.35265306
## 650 HiC_scaffold_5 1944469 0.45918367 0.32986111 0.39669421 0.40650110
## 651 HiC_scaffold_5 2857283 0.50000000 0.49586777 0.47337278 0.49346939
## 652 HiC_scaffold_5 4061378 0.46875000 0.43622449 0.49652778 0.49965374
## 653 HiC_scaffold_5 4340647 0.46280992 0.49652778 0.50000000 0.49346939
## 654 HiC_scaffold_5 4435246 0.39349112 0.31065089 0.49500000 0.41319444
## 655 HiC_scaffold_5 8868783 0.49586777 0.49777778 0.49500000 0.49961420
## 656 HiC_scaffold_50 4315969 0.49586777 0.48611111 0.44444444 0.49959184
## 657 HiC_scaffold_50 11652296 0.32000000 0.13265306 0.00000000 0.15673469
## 658 HiC_scaffold_50 11657309 0.47530864 0.39349112 0.42603550 0.43102041
## 659 HiC_scaffold_50 15521027 0.25500000 0.49111111 0.46280992 0.44444444
## 660 HiC_scaffold_50 21050962 0.40816327 0.49586777 0.35123967 0.43479938
## 661 HiC_scaffold_50 23686202 0.20414201 0.45266272 0.48000000 0.40123457
## 662 HiC_scaffold_50 27393462 0.49704142 0.42603550 0.27777778 0.44122449
## 663 HiC_scaffold_50 42586883 0.46875000 0.43622449 0.44444444 0.45013850
## 664 HiC_scaffold_50 45087211 0.48000000 0.45918367 0.43388430 0.48530612
## 665 HiC_scaffold_50 49796550 0.26035503 0.00000000 0.00000000 0.10775510
## 666 HiC_scaffold_50 54383367 0.41319444 0.45918367 0.47530864 0.45061224
## 667 HiC_scaffold_50 63318678 0.37500000 0.37500000 0.37500000 0.37500000
## 668 HiC_scaffold_51 3521000 0.50000000 0.37500000 0.49586777 0.47530864
## 669 HiC_scaffold_51 4681905 0.43388430 0.39669421 0.31065089 0.38204082
## 670 HiC_scaffold_51 6305599 0.24380165 0.59777778 0.46000000 0.48572531
## 671 HiC_scaffold_51 8530818 0.49652778 0.43622449 0.44444444 0.49861496
## 672 HiC_scaffold_51 11653312 0.49652778 0.46875000 0.39669421 0.46693878
## 673 HiC_scaffold_51 13138547 0.07986111 0.20414201 0.23553719 0.17554012
## 674 HiC_scaffold_51 14457091 0.48347107 0.42000000 0.42000000 0.44444444
## 675 HiC_scaffold_51 15512668 0.50000000 0.48979592 0.50000000 0.49845679
## 676 HiC_scaffold_51 17816346 0.42603550 0.42603550 0.45266272 0.43556870
## 677 HiC_scaffold_51 19997934 0.15277778 0.42603550 0.37500000 0.33673469
## 678 HiC_scaffold_51 19997936 0.15277778 0.42603550 0.37500000 0.33673469
## 679 HiC_scaffold_51 20870773 0.47704082 0.43388430 0.35502959 0.43213296
## 680 HiC_scaffold_51 26660104 0.45266272 0.41319444 0.49652778 0.47662527
## 681 HiC_scaffold_51 40727521 0.41319444 0.48979592 0.49500000 0.48611111
## 682 HiC_scaffold_51 40892841 0.47337278 0.42603550 0.48347107 0.46347699
## 683 HiC_scaffold_51 41717519 0.49652778 0.47704082 0.50000000 0.49346939
## 684 HiC_scaffold_51 42547638 0.37500000 0.20414201 0.32986111 0.30244898
## 685 HiC_scaffold_52 3335804 0.48816568 0.50000000 0.39349112 0.47530864
## 686 HiC_scaffold_52 4149130 0.48347107 0.45266272 0.43388430 0.45918367
## 687 HiC_scaffold_52 6893679 0.29752066 0.00000000 0.08677686 0.13265306
## 688 HiC_scaffold_52 13155416 0.41319444 0.06887755 0.16528926 0.23374726
## 689 HiC_scaffold_52 13155437 0.32986111 0.06887755 0.18000000 0.19753086
## 690 HiC_scaffold_52 13155442 0.32986111 0.07396450 0.18000000 0.20244898
## 691 HiC_scaffold_52 14885688 0.42603550 0.49704142 0.37500000 0.45331790
## 692 HiC_scaffold_52 14895078 0.35123967 0.49704142 0.41319444 0.44444444
## 693 HiC_scaffold_52 15141791 0.39669421 0.50000000 0.46280992 0.49845679
## 694 HiC_scaffold_52 15743051 0.41319444 0.49777778 0.48000000 0.47662527
## 695 HiC_scaffold_52 15760201 0.48816568 0.48347107 0.41319444 0.49035494
## 696 HiC_scaffold_52 15834589 0.39669421 0.39349112 0.48347107 0.43102041
## 697 HiC_scaffold_52 15841769 0.41319444 0.45266272 0.43388430 0.43479938
## 698 HiC_scaffold_52 15862421 0.48816568 0.48347107 0.29752066 0.48000000
## 699 HiC_scaffold_52 15970970 0.62000000 0.53826531 0.41735537 0.53591837
## 700 HiC_scaffold_52 16275237 0.47337278 0.50000000 0.49500000 0.49853908
## 701 HiC_scaffold_52 16275240 0.43388430 0.49744898 0.39669421 0.46141975
## 702 HiC_scaffold_52 16275290 0.27777778 0.45918367 0.46875000 0.43102041
## 703 HiC_scaffold_52 16524164 0.35502959 0.40816327 0.50000000 0.44148199
## 704 HiC_scaffold_52 16524572 0.21875000 0.26035503 0.00000000 0.17554012
## 705 HiC_scaffold_52 16525647 0.48611111 0.48979592 0.50000000 0.49382716
## 706 HiC_scaffold_52 16637047 0.39669421 0.45918367 0.42000000 0.48979592
## 707 HiC_scaffold_52 17202127 0.37500000 0.35502959 0.48816568 0.42438272
## 708 HiC_scaffold_52 17207724 0.32986111 0.35123967 0.32986111 0.33673469
## 709 HiC_scaffold_52 17508820 0.39669421 0.49744898 0.35123967 0.44444444
## 710 HiC_scaffold_52 17547593 0.49704142 0.49652778 0.41319444 0.48210373
## 711 HiC_scaffold_52 17551239 0.39349112 0.50000000 0.49500000 0.49134349
## 712 HiC_scaffold_52 17560696 0.46875000 0.47337278 0.49500000 0.49959184
## 713 HiC_scaffold_52 17560699 0.46875000 0.48816568 0.49500000 0.49836735
## 714 HiC_scaffold_52 17741250 0.46875000 0.46875000 0.49586777 0.48979592
## 715 HiC_scaffold_52 17742260 0.48347107 0.44444444 0.44444444 0.49836735
## 716 HiC_scaffold_52 18340578 0.49652778 0.49744898 0.50000000 0.49836735
## 717 HiC_scaffold_52 18415911 0.49500000 0.47704082 0.48611111 0.49845679
## 718 HiC_scaffold_52 22189517 0.50000000 0.48816568 0.48816568 0.49382716
## 719 HiC_scaffold_52 22526592 0.48611111 0.49652778 0.37500000 0.48109568
## 720 HiC_scaffold_52 26393471 0.48347107 0.41319444 0.49652778 0.48530612
## 721 HiC_scaffold_52 26799380 0.44444444 0.49704142 0.48347107 0.49035494
## 722 HiC_scaffold_52 31871931 0.48347107 0.46875000 0.48611111 0.49632653
## 723 HiC_scaffold_52 31874283 0.21875000 0.18000000 0.21875000 0.20244898
## 724 HiC_scaffold_52 31874287 0.21875000 0.49777778 0.41319444 0.42603550
## 725 HiC_scaffold_52 32161053 0.27777778 0.06444444 0.09500000 0.15968750
## 726 HiC_scaffold_52 33165557 0.40123457 0.47704082 0.49652778 0.49836735
## 727 HiC_scaffold_52 33897620 0.37500000 0.45266272 0.48816568 0.45331790
## 728 HiC_scaffold_52 34763156 0.50000000 0.49586777 0.49586777 0.50000000
## 729 HiC_scaffold_52 34763171 0.45918367 0.49586777 0.48611111 0.48210373
## 730 HiC_scaffold_52 35174755 0.41319444 0.35502959 0.48000000 0.42000000
## 731 HiC_scaffold_52 35608453 0.44444444 0.49704142 0.44444444 0.48210373
## 732 HiC_scaffold_52 35608470 0.46875000 0.49704142 0.48611111 0.49415632
## 733 HiC_scaffold_52 39464728 0.48816568 0.46875000 0.32000000 0.45061224
## 734 HiC_scaffold_52 42141354 0.49652778 0.50000000 0.37500000 0.49382716
## 735 HiC_scaffold_52 44675725 0.08677686 0.21875000 0.15277778 0.15673469
## 736 HiC_scaffold_52 49935920 0.48611111 0.48816568 0.49500000 0.48979592
## 737 HiC_scaffold_53 21789524 0.32000000 0.45918367 0.44444444 0.42438272
## 738 HiC_scaffold_53 25168042 0.43388430 0.48816568 0.49652778 0.48109568
## 739 HiC_scaffold_53 26398989 0.50000000 0.26035503 0.48611111 0.45061224
## 740 HiC_scaffold_53 26398992 0.50000000 0.26035503 0.48611111 0.45061224
## 741 HiC_scaffold_53 26398994 0.50000000 0.26035503 0.48611111 0.45061224
## 742 HiC_scaffold_53 26549665 0.45266272 0.46280992 0.46280992 0.49346939
## 743 HiC_scaffold_53 29227676 0.50000000 0.49704142 0.50000000 0.49959184
## 744 HiC_scaffold_53 31250349 0.14201183 0.15277778 0.09500000 0.13265306
## 745 HiC_scaffold_54 530581 0.07396450 0.43388430 0.07986111 0.21875000
## 746 HiC_scaffold_54 794095 0.43388430 0.44444444 0.35502959 0.41319444
## 747 HiC_scaffold_54 1171109 0.27777778 0.50000000 0.35502959 0.43479938
## 748 HiC_scaffold_54 1378956 0.49744898 0.48816568 0.07986111 0.43556870
## 749 HiC_scaffold_54 1380539 0.35123967 0.35502959 0.44444444 0.38850309
## 750 HiC_scaffold_54 3045015 0.39669421 0.37500000 0.09500000 0.32000000
## 751 HiC_scaffold_54 3185987 0.48979592 0.48979592 0.42000000 0.47783934
## 752 HiC_scaffold_54 4401098 0.47530864 0.48000000 0.46280992 0.47387755
## 753 HiC_scaffold_54 5595903 0.43388430 0.45918367 0.39669421 0.49652778
## 754 HiC_scaffold_54 5595921 0.39669421 0.44444444 0.46875000 0.44122449
## 755 HiC_scaffold_54 5595928 0.48347107 0.45918367 0.37500000 0.44740687
## 756 HiC_scaffold_54 5595949 0.48000000 0.32000000 0.48611111 0.43827611
## 757 HiC_scaffold_54 6649662 0.49652778 0.39669421 0.50000000 0.49346939
## 758 HiC_scaffold_54 8036734 0.49744898 0.50000000 0.40123457 0.49652778
## 759 HiC_scaffold_54 9206614 0.43388430 0.45266272 0.43388430 0.49346939
## 760 HiC_scaffold_54 35913192 0.35502959 0.33673469 0.49652778 0.43556870
## 761 HiC_scaffold_54 35913282 0.49652778 0.47337278 0.48347107 0.49382716
## 762 HiC_scaffold_54 35913283 0.46875000 0.50000000 0.50000000 0.49632653
## 763 HiC_scaffold_55 1260491 0.25500000 0.29336735 0.35502959 0.30679328
## 764 HiC_scaffold_55 3254027 0.49744898 0.49111111 0.50000000 0.49968750
## 765 HiC_scaffold_55 3281985 0.50000000 0.41319444 0.46875000 0.49845679
## 766 HiC_scaffold_55 5409544 0.48347107 0.50000000 0.44444444 0.49836735
## 767 HiC_scaffold_55 5411094 0.08677686 0.26035503 0.32986111 0.23919753
## 768 HiC_scaffold_55 5411115 0.15277778 0.37500000 0.32986111 0.30055402
## 769 HiC_scaffold_55 18121799 0.33673469 0.23553719 0.35123967 0.31327160
## 770 HiC_scaffold_55 19605809 0.35123967 0.50000000 0.43388430 0.45918367
## 771 HiC_scaffold_55 19605817 0.46875000 0.45266272 0.27777778 0.41782323
## 772 HiC_scaffold_55 19605821 0.26035503 0.20414201 0.00000000 0.17129291
## 773 HiC_scaffold_55 20195204 0.43388430 0.50000000 0.29752066 0.45061224
## 774 HiC_scaffold_55 20886967 0.50000000 0.48611111 0.15277778 0.44444444
## 775 HiC_scaffold_55 23222937 0.50000000 0.35502959 0.49382716 0.47387755
## 776 HiC_scaffold_55 23626331 0.23553719 0.43622449 0.48347107 0.45331790
## 777 HiC_scaffold_55 24539590 0.50000000 0.35502959 0.49500000 0.47387755
## 778 HiC_scaffold_55 24585939 0.37500000 0.49586777 0.48000000 0.45918367
## 779 HiC_scaffold_55 34174151 0.50000000 0.49704142 0.46875000 0.49853908
## 780 HiC_scaffold_56 17874332 0.46280992 0.49652778 0.49652778 0.49632653
## 781 HiC_scaffold_56 18635259 0.50000000 0.48000000 0.39669421 0.47662527
## 782 HiC_scaffold_56 23654344 0.39669421 0.47337278 0.35123967 0.42000000
## 783 HiC_scaffold_56 35850533 0.45266272 0.23111111 0.50000000 0.43307555
## 784 HiC_scaffold_56 35850539 0.39349112 0.46444444 0.37500000 0.42000000
## 785 HiC_scaffold_56 40813556 0.50000000 0.49704142 0.48816568 0.49632653
## 786 HiC_scaffold_56 53211633 0.29752066 0.43388430 0.48816568 0.43102041
## 787 HiC_scaffold_56 60070829 0.35502959 0.19132653 0.07986111 0.22353715
## 788 HiC_scaffold_56 73286017 0.46875000 0.49652778 0.46280992 0.48000000
## 789 HiC_scaffold_56 73829442 0.18500000 0.13520408 0.29166667 0.20370370
## 790 HiC_scaffold_56 73829443 0.16942149 0.12666667 0.29166667 0.19390582
## 791 HiC_scaffold_56 76060304 0.35123967 0.49704142 0.45266272 0.47041636
## 792 HiC_scaffold_57 25306408 0.49652778 0.50000000 0.48611111 0.49632653
## 793 HiC_scaffold_57 29222385 0.45266272 0.35502959 0.44444444 0.42000000
## 794 HiC_scaffold_57 29592432 0.50000000 0.39349112 0.46280992 0.46693878
## 795 HiC_scaffold_57 31472698 0.43622449 0.48611111 0.27777778 0.43102041
## 796 HiC_scaffold_57 32371742 0.37500000 0.48000000 0.44444444 0.44740687
## 797 HiC_scaffold_57 36495072 0.49704142 0.44444444 0.23553719 0.43479938
## 798 HiC_scaffold_57 37286264 0.46875000 0.43622449 0.44444444 0.49959184
## 799 HiC_scaffold_57 38537415 0.50000000 0.37500000 0.50000000 0.48530612
## 800 HiC_scaffold_57 45438854 0.57438017 0.48979592 0.55500000 0.62367347
## 801 HiC_scaffold_57 52856874 0.49652778 0.07986111 0.48347107 0.42000000
## 802 HiC_scaffold_57 53575355 0.50000000 0.48000000 0.49586777 0.49415632
## 803 HiC_scaffold_57 55856783 0.34567901 0.46444444 0.39669421 0.48530612
## 804 HiC_scaffold_58 1362614 0.31065089 0.50000000 0.49586777 0.46875000
## 805 HiC_scaffold_58 1432845 0.21875000 0.19132653 0.00000000 0.14901388
## 806 HiC_scaffold_58 1541720 0.20414201 0.32248521 0.44444444 0.33632653
## 807 HiC_scaffold_58 2777120 0.48611111 0.46875000 0.46875000 0.49382716
## 808 HiC_scaffold_58 2973169 0.20414201 0.00000000 0.14201183 0.13265306
## 809 HiC_scaffold_58 3243043 0.45918367 0.45266272 0.37500000 0.44122449
## 810 HiC_scaffold_58 4035282 0.35123967 0.49744898 0.50000000 0.48979592
## 811 HiC_scaffold_58 5442157 0.50000000 0.48000000 0.46280992 0.48530612
## 812 HiC_scaffold_58 8004631 0.35502959 0.42000000 0.49382716 0.44740687
## 813 HiC_scaffold_58 8058998 0.43388430 0.46444444 0.34567901 0.43102041
## 814 HiC_scaffold_58 8932837 0.48979592 0.49704142 0.48347107 0.49965374
## 815 HiC_scaffold_58 14814944 0.43388430 0.39349112 0.46280992 0.43102041
## 816 HiC_scaffold_58 15639988 0.29752066 0.49586777 0.47337278 0.45061224
## 817 HiC_scaffold_58 15707198 0.37500000 0.35123967 0.31065089 0.34567901
## 818 HiC_scaffold_58 15707258 0.39669421 0.40816327 0.25500000 0.36775510
## 819 HiC_scaffold_58 15710623 0.39349112 0.46444444 0.48347107 0.45266272
## 820 HiC_scaffold_58 19155063 0.47337278 0.40123457 0.47337278 0.45918367
## 821 HiC_scaffold_58 20224050 0.48347107 0.47337278 0.50000000 0.48979592
## 822 HiC_scaffold_58 38475355 0.29752066 0.14201183 0.27777778 0.23919753
## 823 HiC_scaffold_59 3979055 0.50000000 0.45918367 0.49586777 0.49632653
## 824 HiC_scaffold_59 5071810 0.48000000 0.50000000 0.49586777 0.49959184
## 825 HiC_scaffold_59 5349936 0.39349112 0.49586777 0.31065089 0.43827611
## 826 HiC_scaffold_59 5350114 0.47530864 0.50000000 0.21875000 0.45061224
## 827 HiC_scaffold_59 7738302 0.50000000 0.48979592 0.48816568 0.49415632
## 828 HiC_scaffold_59 7738351 0.46280992 0.48979592 0.45500000 0.47387755
## 829 HiC_scaffold_59 7958561 0.49652778 0.37500000 0.37500000 0.45013850
## 830 HiC_scaffold_59 9273798 0.37500000 0.48816568 0.46280992 0.45013850
## 831 HiC_scaffold_59 50928099 0.32986111 0.46875000 0.48611111 0.44444444
## 832 HiC_scaffold_59 52960060 0.29752066 0.43622449 0.48000000 0.42000000
## 833 HiC_scaffold_6 10569023 0.35123967 0.43388430 0.48816568 0.44122449
## 834 HiC_scaffold_6 10711445 0.49382716 0.50000000 0.46280992 0.49836735
## 835 HiC_scaffold_6 13209200 0.49704142 0.49777778 0.50000000 0.50000000
## 836 HiC_scaffold_6 13213107 0.48611111 0.23553719 0.46875000 0.43102041
## 837 HiC_scaffold_6 13311684 0.49652778 0.49704142 0.46280992 0.49035494
## 838 HiC_scaffold_6 15670783 0.49586777 0.48816568 0.43388430 0.49959184
## 839 HiC_scaffold_6 19111232 0.10493827 0.49704142 0.42603550 0.42000000
## 840 HiC_scaffold_6 32805498 0.42000000 0.45266272 0.32986111 0.40816327
## 841 HiC_scaffold_6 38793174 0.48347107 0.49744898 0.46875000 0.48685172
## 842 HiC_scaffold_6 41092101 0.50000000 0.50000000 0.48611111 0.49868508
## 843 HiC_scaffold_6 41342933 0.47337278 0.50000000 0.49586777 0.49845679
## 844 HiC_scaffold_6 47594508 0.45500000 0.35777778 0.46280992 0.42438272
## 845 HiC_scaffold_60 70878 0.15277778 0.29336735 0.19753086 0.22408163
## 846 HiC_scaffold_60 99549 0.48347107 0.29752066 0.47337278 0.44122449
## 847 HiC_scaffold_60 201823 0.49652778 0.39111111 0.35123967 0.43213296
## 848 HiC_scaffold_60 712969 0.32986111 0.26035503 0.37500000 0.32000000
## 849 HiC_scaffold_60 744783 0.48816568 0.48347107 0.50000000 0.50000000
## 850 HiC_scaffold_60 744788 0.45918367 0.46875000 0.44444444 0.45810249
## 851 HiC_scaffold_60 22142128 0.43388430 0.48611111 0.39349112 0.44444444
## 852 HiC_scaffold_60 27599770 0.00000000 0.23553719 0.16528926 0.13265306
## 853 HiC_scaffold_60 30608878 0.45266272 0.39349112 0.21875000 0.37500000
## 854 HiC_scaffold_60 32657324 0.49652778 0.41319444 0.48611111 0.47530864
## 855 HiC_scaffold_60 32672580 0.00000000 0.07396450 0.27777778 0.10775510
## 856 HiC_scaffold_60 38856893 0.47704082 0.39349112 0.46875000 0.45266272
## 857 HiC_scaffold_60 39028335 0.16528926 0.13265306 0.00000000 0.10775510
## 858 HiC_scaffold_60 40296869 0.50000000 0.35502959 0.43388430 0.45331790
## 859 HiC_scaffold_60 42775723 0.43622449 0.49744898 0.49652778 0.48468750
## 860 HiC_scaffold_60 44687906 0.23553719 0.48816568 0.48347107 0.44122449
## 861 HiC_scaffold_60 44804601 0.35123967 0.39669421 0.49704142 0.45918367
## 862 HiC_scaffold_60 53696867 0.31065089 0.48611111 0.49500000 0.45061224
## 863 HiC_scaffold_60 53696868 0.31065089 0.48611111 0.49500000 0.45061224
## 864 HiC_scaffold_60 60651515 0.49704142 0.45918367 0.49500000 0.48685172
## 865 HiC_scaffold_60 70678462 0.26035503 0.07396450 0.18000000 0.17554012
## 866 HiC_scaffold_61 2205328 0.50000000 0.43622449 0.29752066 0.44444444
## 867 HiC_scaffold_61 2491706 0.07396450 0.00000000 0.21875000 0.10493827
## 868 HiC_scaffold_61 4009916 0.35969388 0.22569444 0.55902778 0.41932133
## 869 HiC_scaffold_61 4062917 0.07396450 0.27218935 0.35069444 0.23718837
## 870 HiC_scaffold_61 4122763 0.18000000 0.15277778 0.14201183 0.15673469
## 871 HiC_scaffold_61 4216461 0.42603550 0.37500000 0.39669421 0.40123457
## 872 HiC_scaffold_61 4325053 0.45266272 0.46875000 0.42000000 0.45061224
## 873 HiC_scaffold_61 9004838 0.37500000 0.15277778 0.34567901 0.30244898
## 874 HiC_scaffold_61 14635083 0.49500000 0.49111111 0.48347107 0.49035494
## 875 HiC_scaffold_62 1128608 0.00000000 0.06887755 0.35123967 0.15673469
## 876 HiC_scaffold_62 11335200 0.40625000 0.15277778 0.43388430 0.33959184
## 877 HiC_scaffold_62 18828476 0.44444444 0.15277778 0.29752066 0.32000000
## 878 HiC_scaffold_62 21548870 0.10493827 0.07396450 0.14201183 0.10775510
## 879 HiC_scaffold_62 23103274 0.27777778 0.49111111 0.48347107 0.45918367
## 880 HiC_scaffold_62 25793456 0.41319444 0.49704142 0.48611111 0.47662527
## 881 HiC_scaffold_62 25887474 0.43388430 0.45266272 0.44444444 0.44444444
## 882 HiC_scaffold_62 28516096 0.35502959 0.49704142 0.49500000 0.49035494
## 883 HiC_scaffold_62 28516099 0.35502959 0.49704142 0.49500000 0.49035494
## 884 HiC_scaffold_62 28818725 0.50000000 0.43622449 0.48611111 0.49652778
## 885 HiC_scaffold_62 28818729 0.50000000 0.31065089 0.49652778 0.48000000
## 886 HiC_scaffold_62 45207353 0.35502959 0.45918367 0.48816568 0.44718750
## 887 HiC_scaffold_63 3092269 0.25500000 0.29336735 0.15277778 0.23919753
## 888 HiC_scaffold_63 3977940 0.39349112 0.37500000 0.50000000 0.44122449
## 889 HiC_scaffold_63 4084937 0.48816568 0.49586777 0.29752066 0.45918367
## 890 HiC_scaffold_63 4196326 0.50000000 0.45266272 0.50000000 0.49382716
## 891 HiC_scaffold_63 6262453 0.49500000 0.45266272 0.32986111 0.44122449
## 892 HiC_scaffold_63 6350204 0.31065089 0.24489796 0.37500000 0.30679328
## 893 HiC_scaffold_63 6458794 0.41319444 0.45266272 0.48000000 0.45061224
## 894 HiC_scaffold_64 9162978 0.42592593 0.25510204 0.20414201 0.29166667
## 895 HiC_scaffold_64 16876561 0.41319444 0.37500000 0.46280992 0.42000000
## 896 HiC_scaffold_64 17543009 0.48816568 0.43622449 0.40123457 0.45331790
## 897 HiC_scaffold_64 18925356 0.44444444 0.39349112 0.49704142 0.49346939
## 898 HiC_scaffold_64 19133050 0.48000000 0.48816568 0.45266272 0.47530864
## 899 HiC_scaffold_64 19627769 0.44444444 0.24489796 0.45500000 0.38850309
## 900 HiC_scaffold_64 20477250 0.23553719 0.46444444 0.49500000 0.49035494
## 901 HiC_scaffold_64 22816677 0.42603550 0.47704082 0.39669421 0.44148199
## 902 HiC_scaffold_64 22954654 0.40816327 0.19753086 0.44444444 0.38204082
## 903 HiC_scaffold_64 22954658 0.40816327 0.19753086 0.44444444 0.38204082
## 904 HiC_scaffold_64 22954682 0.33673469 0.25500000 0.35123967 0.32000000
## 905 HiC_scaffold_65 6829971 0.49586777 0.33673469 0.37500000 0.43827611
## 906 HiC_scaffold_65 8071102 0.48347107 0.26035503 0.50000000 0.45061224
## 907 HiC_scaffold_65 9023979 0.44444444 0.39349112 0.42000000 0.42000000
## 908 HiC_scaffold_65 9839671 0.48347107 0.39349112 0.48347107 0.48530612
## 909 HiC_scaffold_65 10404778 0.45918367 0.41319444 0.48347107 0.45580716
## 910 HiC_scaffold_65 11327791 0.27777778 0.24489796 0.00000000 0.19753086
## 911 HiC_scaffold_65 11332104 0.46280992 0.48816568 0.49652778 0.48611111
## 912 HiC_scaffold_65 34823822 0.35123967 0.26035503 0.46280992 0.44122449
## 913 HiC_scaffold_65 51418017 0.00000000 0.19132653 0.15277778 0.12600438
## 914 HiC_scaffold_65 54053979 0.29752066 0.26035503 0.35123967 0.30244898
## 915 HiC_scaffold_65 57110875 0.48611111 0.48611111 0.46280992 0.49632653
## 916 HiC_scaffold_66 15615363 0.49652778 0.50000000 0.32000000 0.48109568
## 917 HiC_scaffold_66 15672090 0.46875000 0.26035503 0.48347107 0.42438272
## 918 HiC_scaffold_66 17903445 0.39669421 0.49704142 0.39669421 0.46693878
## 919 HiC_scaffold_66 18298629 0.48000000 0.47704082 0.39669421 0.48530612
## 920 HiC_scaffold_66 19730676 0.31065089 0.46280992 0.43388430 0.46693878
## 921 HiC_scaffold_66 23688768 0.49704142 0.42603550 0.46280992 0.49963477
## 922 HiC_scaffold_66 26614535 0.23777778 0.29166667 0.35069444 0.29092702
## 923 HiC_scaffold_66 27445665 0.48611111 0.35502959 0.46280992 0.44444444
## 924 HiC_scaffold_66 29457165 0.32986111 0.45918367 0.49586777 0.44740687
## 925 HiC_scaffold_66 29457180 0.47337278 0.39349112 0.50000000 0.47041636
## 926 HiC_scaffold_66 30116287 0.21005917 0.40277778 0.07986111 0.24251278
## 927 HiC_scaffold_66 31603503 0.46280992 0.31065089 0.46875000 0.42438272
## 928 HiC_scaffold_66 33261460 0.44444444 0.49744898 0.32000000 0.45331790
## 929 HiC_scaffold_66 34138981 0.46875000 0.48816568 0.49500000 0.50000000
## 930 HiC_scaffold_66 34139020 0.50000000 0.49704142 0.44444444 0.48979592
## 931 HiC_scaffold_66 34142862 0.50000000 0.42603550 0.42603550 0.46347699
## 932 HiC_scaffold_67 1404390 0.50000000 0.49652778 0.49704142 0.50000000
## 933 HiC_scaffold_67 28493665 0.42603550 0.47337278 0.49382716 0.46693878
## 934 HiC_scaffold_67 30243885 0.45918367 0.35502959 0.48000000 0.43827611
## 935 HiC_scaffold_67 31511806 0.32000000 0.45918367 0.48347107 0.47387755
## 936 HiC_scaffold_67 34638092 0.48347107 0.45266272 0.46875000 0.46875000
## 937 HiC_scaffold_67 37534720 0.35123967 0.40816327 0.48000000 0.49836735
## 938 HiC_scaffold_67 39679546 0.42603550 0.41319444 0.42000000 0.42000000
## 939 HiC_scaffold_67 39854918 0.48347107 0.45918367 0.49500000 0.48000000
## 940 HiC_scaffold_67 39860738 0.50000000 0.45266272 0.46875000 0.48000000
## 941 HiC_scaffold_67 40331656 0.43388430 0.48979592 0.18000000 0.42000000
## 942 HiC_scaffold_67 40824747 0.00000000 0.15277778 0.21875000 0.13265306
## 943 HiC_scaffold_68 3438132 0.07396450 0.37500000 0.18000000 0.23374726
## 944 HiC_scaffold_68 3438133 0.07396450 0.37500000 0.18000000 0.23374726
## 945 HiC_scaffold_68 11206902 0.48611111 0.43388430 0.44444444 0.45918367
## 946 HiC_scaffold_68 32770607 0.49652778 0.39349112 0.42000000 0.45061224
## 947 HiC_scaffold_68 34016823 0.51239669 0.39030612 0.57100592 0.49619114
## 948 HiC_scaffold_68 34020019 0.47337278 0.48611111 0.46280992 0.47530864
## 949 HiC_scaffold_68 40296057 0.20414201 0.44444444 0.49586777 0.43479938
## 950 HiC_scaffold_68 40296059 0.20414201 0.44444444 0.49586777 0.43479938
## 951 HiC_scaffold_68 65001879 0.34567901 0.40816327 0.44444444 0.40816327
## 952 HiC_scaffold_69 23311147 0.52071006 0.31404959 0.48611111 0.46141975
## 953 HiC_scaffold_69 27351303 0.26035503 0.43388430 0.49586777 0.42000000
## 954 HiC_scaffold_69 29437208 0.44444444 0.24489796 0.37500000 0.35265306
## 955 HiC_scaffold_69 33699381 0.16528926 0.00000000 0.15277778 0.10775510
## 956 HiC_scaffold_69 40194698 0.45266272 0.31065089 0.43388430 0.40650110
## 957 HiC_scaffold_69 48273575 0.49652778 0.26035503 0.45500000 0.43102041
## 958 HiC_scaffold_69 48348026 0.44444444 0.49777778 0.49652778 0.48816568
## 959 HiC_scaffold_69 48348034 0.31065089 0.43622449 0.49652778 0.43556870
## 960 HiC_scaffold_69 49563252 0.48979592 0.49744898 0.46280992 0.48816568
## 961 HiC_scaffold_69 49593952 0.39669421 0.45266272 0.48347107 0.48000000
## 962 HiC_scaffold_69 49859037 0.10493827 0.47704082 0.41319444 0.45918367
## 963 HiC_scaffold_69 51271238 0.47530864 0.46444444 0.50000000 0.48530612
## 964 HiC_scaffold_69 51529836 0.50000000 0.33673469 0.35123967 0.42000000
## 965 HiC_scaffold_69 57313650 0.50000000 0.35777778 0.41319444 0.43102041
## 966 HiC_scaffold_69 57359194 0.44444444 0.49777778 0.46875000 0.48109568
## 967 HiC_scaffold_6951 523650 0.47337278 0.49652778 0.45500000 0.48979592
## 968 HiC_scaffold_6951 897126 0.49704142 0.40816327 0.48611111 0.47337278
## 969 HiC_scaffold_6951 1134482 0.48611111 0.49744898 0.40123457 0.48000000
## 970 HiC_scaffold_6951 2484960 0.50000000 0.35502959 0.43388430 0.45331790
## 971 HiC_scaffold_6951 3301273 0.49500000 0.48979592 0.49586777 0.49836735
## 972 HiC_scaffold_6951 3314609 0.49704142 0.49744898 0.42968750 0.49632653
## 973 HiC_scaffold_6951 3945993 0.32000000 0.47704082 0.39669421 0.42000000
## 974 HiC_scaffold_6958 218293 0.07986111 0.38000000 0.38165680 0.30375000
## 975 HiC_scaffold_6958 449143 0.48000000 0.49704142 0.46280992 0.49967127
## 976 HiC_scaffold_7 351023 0.50000000 0.45266272 0.48611111 0.49836735
## 977 HiC_scaffold_7 488024 0.39669421 0.47337278 0.44444444 0.44444444
## 978 HiC_scaffold_7 492663 0.32000000 0.49744898 0.21875000 0.40123457
## 979 HiC_scaffold_7 693567 0.43388430 0.47704082 0.49500000 0.48530612
## 980 HiC_scaffold_7 2379128 0.37500000 0.42603550 0.49652778 0.45061224
## 981 HiC_scaffold_7 3087721 0.49652778 0.29336735 0.29752066 0.39444850
## 982 HiC_scaffold_7 3394880 0.48347107 0.48000000 0.47337278 0.49868508
## 983 HiC_scaffold_7 22247106 0.46280992 0.42000000 0.50000000 0.46693878
## 984 HiC_scaffold_70 4632611 0.48347107 0.49744898 0.48611111 0.49963477
## 985 HiC_scaffold_70 14042778 0.50000000 0.37500000 0.35123967 0.44122449
## 986 HiC_scaffold_71 410844 0.45500000 0.45918367 0.46875000 0.46141975
## 987 HiC_scaffold_71 1753451 0.39349112 0.47337278 0.42000000 0.43479938
## 988 HiC_scaffold_71 2283682 0.35123967 0.40816327 0.49586777 0.45331790
## 989 HiC_scaffold_71 3439685 0.21875000 0.30867347 0.26923077 0.27087442
## 990 HiC_scaffold_71 17850462 0.45266272 0.48816568 0.49382716 0.49632653
## 991 HiC_scaffold_71 20588314 0.49586777 0.46444444 0.50000000 0.49134349
## 992 HiC_scaffold_71 25465351 0.50000000 0.48611111 0.48347107 0.49382716
## 993 HiC_scaffold_71 25465352 0.50000000 0.48611111 0.48347107 0.49382716
## 994 HiC_scaffold_71 26356062 0.48347107 0.39349112 0.48347107 0.45918367
## 995 HiC_scaffold_72 11785096 0.29752066 0.45266272 0.48611111 0.43479938
## 996 HiC_scaffold_72 17285854 0.15277778 0.44444444 0.37500000 0.35265306
## 997 HiC_scaffold_72 23704999 0.50000000 0.39349112 0.27777778 0.42000000
## 998 HiC_scaffold_72 24465318 0.32000000 0.45918367 0.50000000 0.46141975
## 999 HiC_scaffold_72 30457277 0.46875000 0.35502959 0.48816568 0.45013850
## 1000 HiC_scaffold_72 32068649 0.48347107 0.49586777 0.47337278 0.48530612
## 1001 HiC_scaffold_72 35058295 0.49586777 0.39111111 0.48000000 0.46141975
## 1002 HiC_scaffold_72 36024997 0.49500000 0.48979592 0.48611111 0.49961420
## 1003 HiC_scaffold_72 37135067 0.40816327 0.46280992 0.48611111 0.45580716
## 1004 HiC_scaffold_72 38410141 0.48347107 0.37500000 0.32000000 0.40816327
## 1005 HiC_scaffold_72 38448056 0.47530864 0.44444444 0.44444444 0.45331790
## 1006 HiC_scaffold_72 41412511 0.44444444 0.49652778 0.23553719 0.43102041
## 1007 HiC_scaffold_73 2192629 0.48816568 0.49586777 0.49586777 0.49346939
## 1008 HiC_scaffold_73 2920208 0.47337278 0.42603550 0.50000000 0.47387755
## 1009 HiC_scaffold_73 4522493 0.00000000 0.18000000 0.15277778 0.10775510
## 1010 HiC_scaffold_73 4748625 0.48611111 0.47337278 0.25500000 0.44122449
## 1011 HiC_scaffold_73 5839336 0.50000000 0.00000000 0.16528926 0.27777778
## 1012 HiC_scaffold_73 9338582 0.39669421 0.48816568 0.46280992 0.48530612
## 1013 HiC_scaffold_73 27393859 0.42603550 0.39349112 0.47530864 0.43102041
## 1014 HiC_scaffold_74 14235619 0.29752066 0.43388430 0.50000000 0.49632653
## 1015 HiC_scaffold_74 14515598 0.10493827 0.12444444 0.23553719 0.15673469
## 1016 HiC_scaffold_74 15116121 0.35777778 0.44444444 0.49218750 0.45061224
## 1017 HiC_scaffold_74 17233613 0.39669421 0.33673469 0.32000000 0.35265306
## 1018 HiC_scaffold_74 17725340 0.40123457 0.42603550 0.45266272 0.43102041
## 1019 HiC_scaffold_74 18418135 0.48611111 0.48979592 0.47530864 0.49836735
## 1020 HiC_scaffold_74 18418138 0.48611111 0.44444444 0.42000000 0.48210373
## 1021 HiC_scaffold_74 21254425 0.14201183 0.29336735 0.23553719 0.22853186
## 1022 HiC_scaffold_74 22261065 0.50000000 0.45266272 0.48611111 0.48611111
## 1023 HiC_scaffold_74 47132519 0.43388430 0.45918367 0.49500000 0.48000000
## 1024 HiC_scaffold_74 50979096 0.49586777 0.50000000 0.39669421 0.48530612
## 1025 HiC_scaffold_74 51060549 0.49704142 0.43388430 0.44444444 0.46875000
## 1026 HiC_scaffold_74 53256803 0.46875000 0.49744898 0.45500000 0.48109568
## 1027 HiC_scaffold_74 55464169 0.49586777 0.49704142 0.43388430 0.49346939
## 1028 HiC_scaffold_74 55515512 0.50000000 0.39349112 0.48816568 0.47530864
## 1029 HiC_scaffold_74 55999260 0.40816327 0.35502959 0.50000000 0.43102041
## 1030 HiC_scaffold_74 57404902 0.48816568 0.49704142 0.42000000 0.48109568
## 1031 HiC_scaffold_74 58181927 0.50000000 0.49111111 0.49704142 0.49671293
## 1032 HiC_scaffold_74 58198600 0.47530864 0.49744898 0.49652778 0.49836735
## 1033 HiC_scaffold_74 63060195 0.27777778 0.31065089 0.25500000 0.28408163
## 1034 HiC_scaffold_75 5345466 0.48611111 0.42603550 0.37500000 0.44122449
## 1035 HiC_scaffold_75 5346522 0.47337278 0.48816568 0.48611111 0.48303324
## 1036 HiC_scaffold_75 5346535 0.47704082 0.48816568 0.48347107 0.48303324
## 1037 HiC_scaffold_75 9850973 0.32986111 0.49744898 0.42000000 0.44444444
## 1038 HiC_scaffold_76 27149820 0.49652778 0.40816327 0.46875000 0.47783934
## 1039 HiC_scaffold_76 31582908 0.50000000 0.43388430 0.48611111 0.48685172
## 1040 HiC_scaffold_76 31792815 0.45918367 0.32986111 0.48816568 0.44444444
## 1041 HiC_scaffold_76 35352820 0.46875000 0.44444444 0.44444444 0.49652778
## 1042 HiC_scaffold_76 57782171 0.46875000 0.37500000 0.40123457 0.48530612
## 1043 HiC_scaffold_76 59862401 0.48347107 0.49744898 0.49500000 0.49836735
## 1044 HiC_scaffold_76 61095594 0.50000000 0.47337278 0.50000000 0.49632653
## 1045 HiC_scaffold_76 65496128 0.39669421 0.49744898 0.50000000 0.48685172
## 1046 HiC_scaffold_76 68965847 0.42000000 0.48979592 0.49652778 0.48109568
## 1047 HiC_scaffold_76 68966411 0.39669421 0.42603550 0.48347107 0.47387755
## 1048 HiC_scaffold_76 69823482 0.48000000 0.48816568 0.48611111 0.49836735
## 1049 HiC_scaffold_76 73343841 0.42603550 0.15277778 0.37500000 0.33673469
## 1050 HiC_scaffold_77 3598274 0.29752066 0.47704082 0.46875000 0.43827611
## 1051 HiC_scaffold_77 6982137 0.50000000 0.32986111 0.48347107 0.46693878
## 1052 HiC_scaffold_77 11021994 0.32986111 0.33673469 0.27777778 0.31682825
## 1053 HiC_scaffold_77 13608165 0.45500000 0.39349112 0.47337278 0.44444444
## 1054 HiC_scaffold_77 16888594 0.35502959 0.49744898 0.49500000 0.48210373
## 1055 HiC_scaffold_77 16888623 0.46280992 0.43622449 0.46280992 0.45331790
## 1056 HiC_scaffold_77 16889448 0.50000000 0.37500000 0.43388430 0.46022354
## 1057 HiC_scaffold_77 39784685 0.44444444 0.40816327 0.45500000 0.43479938
## 1058 HiC_scaffold_77 44375866 0.49777778 0.29752066 0.48611111 0.48753463
## 1059 HiC_scaffold_77 45385370 0.42603550 0.47704082 0.46280992 0.45810249
## 1060 HiC_scaffold_78 5719919 0.49744898 0.44444444 0.49586777 0.49415632
## 1061 HiC_scaffold_78 11353297 0.49382716 0.40816327 0.39349112 0.45331790
## 1062 HiC_scaffold_78 27316392 0.49652778 0.44444444 0.49586777 0.48530612
## 1063 HiC_scaffold_78 48124809 0.21005917 0.57111111 0.00000000 0.34582512
## 1064 HiC_scaffold_78 48124826 0.48816568 0.23111111 0.46875000 0.45331790
## 1065 HiC_scaffold_78 48126176 0.48000000 0.50000000 0.37500000 0.47530864
## 1066 HiC_scaffold_78 48279096 0.49586777 0.44444444 0.45500000 0.46875000
## 1067 HiC_scaffold_78 48434558 0.42000000 0.47337278 0.46875000 0.49346939
## 1068 HiC_scaffold_78 49759181 0.45500000 0.44444444 0.45500000 0.49959184
## 1069 HiC_scaffold_78 49759192 0.46280992 0.45266272 0.32986111 0.42438272
## 1070 HiC_scaffold_78 49759215 0.44444444 0.40816327 0.48000000 0.44444444
## 1071 HiC_scaffold_78 51364025 0.09500000 0.20414201 0.07986111 0.13265306
## 1072 HiC_scaffold_78 55395445 0.49744898 0.49704142 0.19753086 0.48109568
## 1073 HiC_scaffold_78 59610866 0.48816568 0.46875000 0.42000000 0.49959184
## 1074 HiC_scaffold_78 62136661 0.49500000 0.39349112 0.42603550 0.46141975
## 1075 HiC_scaffold_79 1643780 0.49586777 0.29752066 0.48816568 0.45918367
## 1076 HiC_scaffold_79 2519178 0.00000000 0.19132653 0.16528926 0.12924383
## 1077 HiC_scaffold_79 2858100 0.46280992 0.42603550 0.35123967 0.47387755
## 1078 HiC_scaffold_79 3922454 0.32986111 0.42603550 0.49586777 0.43479938
## 1079 HiC_scaffold_79 4127878 0.48979592 0.39111111 0.44444444 0.44973230
## 1080 HiC_scaffold_79 4543693 0.48611111 0.35123967 0.50000000 0.47387755
## 1081 HiC_scaffold_79 11507678 0.46280992 0.47337278 0.43388430 0.49836735
## 1082 HiC_scaffold_79 12618812 0.50000000 0.45266272 0.44444444 0.47387755
## 1083 HiC_scaffold_79 14185404 0.33673469 0.07986111 0.00000000 0.17554012
## 1084 HiC_scaffold_79 17120237 0.49652778 0.45266272 0.50000000 0.49671293
## 1085 HiC_scaffold_79 17120254 0.49652778 0.48816568 0.48611111 0.49671293
## 1086 HiC_scaffold_79 35551507 0.49652778 0.48000000 0.49586777 0.49134349
## 1087 HiC_scaffold_79 35551543 0.48000000 0.48000000 0.50000000 0.49134349
## 1088 HiC_scaffold_79 38927423 0.48000000 0.46444444 0.37500000 0.45061224
## 1089 HiC_scaffold_79 42623307 0.27777778 0.15277778 0.41319444 0.29591049
## 1090 HiC_scaffold_79 43179786 0.48000000 0.49744898 0.43388430 0.48979592
## 1091 HiC_scaffold_79 43180099 0.45266272 0.48979592 0.47530864 0.47530864
## 1092 HiC_scaffold_79 43828078 0.43388430 0.49704142 0.35123967 0.45061224
## 1093 HiC_scaffold_79 43872513 0.37500000 0.45918367 0.48611111 0.45013850
## 1094 HiC_scaffold_79 44627215 0.07396450 0.20414201 0.16528926 0.14901388
## 1095 HiC_scaffold_79 50772769 0.48347107 0.48816568 0.46280992 0.48000000
## 1096 HiC_scaffold_79 55468575 0.44444444 0.50000000 0.46875000 0.48000000
## 1097 HiC_scaffold_79 55816114 0.50000000 0.48816568 0.43388430 0.48530612
## 1098 HiC_scaffold_79 59915784 0.47704082 0.46875000 0.29752066 0.43827611
## 1099 HiC_scaffold_79 60165298 0.49704142 0.45918367 0.50000000 0.49086925
## 1100 HiC_scaffold_79 60165305 0.29336735 0.45266272 0.49218750 0.42000000
## 1101 HiC_scaffold_79 69145556 0.32986111 0.24380165 0.20414201 0.27044753
## 1102 HiC_scaffold_79 70208305 0.49704142 0.50000000 0.49500000 0.49836735
## 1103 HiC_scaffold_79 73412292 0.44791667 0.27218935 0.34000000 0.35877551
## 1104 HiC_scaffold_79 73416663 0.44444444 0.47704082 0.50000000 0.48000000
## 1105 HiC_scaffold_79 73416688 0.39669421 0.42000000 0.47530864 0.43102041
## 1106 HiC_scaffold_79 76863102 0.48611111 0.39669421 0.37500000 0.43102041
## 1107 HiC_scaffold_79 81279649 0.23553719 0.49704142 0.39669421 0.42000000
## 1108 HiC_scaffold_79 81499990 0.00000000 0.31065089 0.21875000 0.19753086
## 1109 HiC_scaffold_79 82319836 0.49704142 0.43622449 0.50000000 0.49382716
## 1110 HiC_scaffold_79 82319849 0.48611111 0.37500000 0.27777778 0.40816327
## 1111 HiC_scaffold_79 83163707 0.43388430 0.47704082 0.49500000 0.47387755
## 1112 HiC_scaffold_79 86283512 0.49500000 0.49744898 0.41319444 0.48109568
## 1113 HiC_scaffold_79 87123758 0.00000000 0.26035503 0.16528926 0.15277778
## 1114 HiC_scaffold_79 88362889 0.48347107 0.47704082 0.46875000 0.47662527
## 1115 HiC_scaffold_79 88599431 0.48611111 0.45266272 0.48000000 0.50000000
## 1116 HiC_scaffold_79 89322919 0.48347107 0.47704082 0.48000000 0.48000000
## 1117 HiC_scaffold_79 89331918 0.49586777 0.26035503 0.50000000 0.47387755
## 1118 HiC_scaffold_79 91340958 0.48611111 0.49744898 0.50000000 0.49961420
## 1119 HiC_scaffold_8 13649836 0.26035503 0.37500000 0.18000000 0.28408163
## 1120 HiC_scaffold_8 13650752 0.23553719 0.15277778 0.32986111 0.24489796
## 1121 HiC_scaffold_8 23818233 0.46280992 0.29336735 0.37500000 0.38204082
## 1122 HiC_scaffold_8 24123972 0.48347107 0.32986111 0.50000000 0.46875000
## 1123 HiC_scaffold_8 24230791 0.41319444 0.42603550 0.50000000 0.46141975
## 1124 HiC_scaffold_8 24588423 0.46500000 0.41124260 0.21875000 0.37836735
## 1125 HiC_scaffold_8 25348483 0.48611111 0.41319444 0.46875000 0.46141975
## 1126 HiC_scaffold_8 25421933 0.37500000 0.48000000 0.48000000 0.45918367
## 1127 HiC_scaffold_8 25772942 0.48000000 0.49777778 0.48000000 0.49632653
## 1128 HiC_scaffold_8 26289589 0.43622449 0.44444444 0.47530864 0.45013850
## 1129 HiC_scaffold_8 27602740 0.40816327 0.42000000 0.45918367 0.42438272
## 1130 HiC_scaffold_8 28159063 0.41319444 0.29336735 0.34567901 0.35265306
## 1131 HiC_scaffold_8 30829320 0.48611111 0.35502959 0.37500000 0.42000000
## 1132 HiC_scaffold_8 31044084 0.44444444 0.42603550 0.37500000 0.42000000
## 1133 HiC_scaffold_8 31415507 0.48611111 0.35502959 0.40500000 0.42408163
## 1134 HiC_scaffold_8 32594682 0.46875000 0.42000000 0.49218750 0.49346939
## 1135 HiC_scaffold_80 3617847 0.35123967 0.37500000 0.18000000 0.32000000
## 1136 HiC_scaffold_80 5758183 0.48816568 0.47337278 0.45266272 0.47337278
## 1137 HiC_scaffold_80 6760006 0.50000000 0.45918367 0.44444444 0.50000000
## 1138 HiC_scaffold_80 6760037 0.49652778 0.43622449 0.49586777 0.48210373
## 1139 HiC_scaffold_80 7772622 0.37500000 0.00000000 0.07396450 0.15673469
## 1140 HiC_scaffold_80 7919533 0.56944444 0.63609467 0.55621302 0.59729917
## 1141 HiC_scaffold_80 8110052 0.48347107 0.29336735 0.49652778 0.47662527
## 1142 HiC_scaffold_80 8193366 0.15277778 0.21875000 0.32986111 0.23919753
## 1143 HiC_scaffold_80 8625784 0.00000000 0.24489796 0.19753086 0.15277778
## 1144 HiC_scaffold_80 8912846 0.49704142 0.50000000 0.50000000 0.49967127
## 1145 HiC_scaffold_80 9544102 0.42000000 0.49744898 0.46875000 0.47530864
## 1146 HiC_scaffold_80 10770701 0.45500000 0.45266272 0.49652778 0.47387755
## 1147 HiC_scaffold_80 11590146 0.47530864 0.35502959 0.42603550 0.42000000
## 1148 HiC_scaffold_80 16953653 0.29752066 0.48611111 0.49652778 0.45918367
## 1149 HiC_scaffold_80 18938832 0.37500000 0.48611111 0.49586777 0.48000000
## 1150 HiC_scaffold_80 19015946 0.15277778 0.07986111 0.39669421 0.22408163
## 1151 HiC_scaffold_80 19404001 0.41319444 0.19132653 0.09500000 0.25887346
## 1152 HiC_scaffold_80 25346708 0.49652778 0.49652778 0.41319444 0.49035494
## 1153 HiC_scaffold_80 37479851 0.50000000 0.42603550 0.32986111 0.44444444
## 1154 HiC_scaffold_80 37507516 0.46875000 0.49652778 0.46280992 0.48979592
## 1155 HiC_scaffold_81 1187192 0.40123457 0.40816327 0.48611111 0.44122449
## 1156 HiC_scaffold_81 2689826 0.48979592 0.44444444 0.37500000 0.45331790
## 1157 HiC_scaffold_81 2690751 0.47337278 0.49704142 0.50000000 0.49346939
## 1158 HiC_scaffold_81 6614123 0.49652778 0.50000000 0.42000000 0.49652778
## 1159 HiC_scaffold_81 7836855 0.48000000 0.35777778 0.39669421 0.45331790
## 1160 HiC_scaffold_81 10334868 0.49652778 0.42603550 0.48347107 0.47530864
## 1161 HiC_scaffold_81 10458752 0.49744898 0.49500000 0.41319444 0.49035494
## 1162 HiC_scaffold_81 17515538 0.24489796 0.27777778 0.23553719 0.25310446
## 1163 HiC_scaffold_81 40271282 0.48611111 0.37500000 0.39669421 0.43102041
## 1164 HiC_scaffold_81 40271294 0.50000000 0.42603550 0.46280992 0.47387755
## 1165 HiC_scaffold_81 41096427 0.42000000 0.42000000 0.42000000 0.42000000
## 1166 HiC_scaffold_81 41096444 0.39669421 0.42000000 0.44444444 0.42000000
## 1167 HiC_scaffold_81 43820595 0.49704142 0.32000000 0.42000000 0.45013850
## 1168 HiC_scaffold_81 43820732 0.48347107 0.43622449 0.32000000 0.43102041
## 1169 HiC_scaffold_81 43854278 0.49586777 0.44444444 0.45266272 0.46875000
## 1170 HiC_scaffold_81 44804862 0.49652778 0.49744898 0.50000000 0.50000000
## 1171 HiC_scaffold_81 45063428 0.37500000 0.46875000 0.39669421 0.42000000
## 1172 HiC_scaffold_81 45950590 0.37500000 0.47337278 0.37500000 0.42000000
## 1173 HiC_scaffold_81 46714752 0.32986111 0.46444444 0.40123457 0.41319444
## 1174 HiC_scaffold_81 46714759 0.48816568 0.49744898 0.47530864 0.49652778
## 1175 HiC_scaffold_81 47170397 0.32000000 0.07396450 0.00000000 0.13265306
## 1176 HiC_scaffold_81 47628201 0.47337278 0.35502959 0.43388430 0.42841490
## 1177 HiC_scaffold_81 48105216 0.47704082 0.48816568 0.48347107 0.49965374
## 1178 HiC_scaffold_81 48932070 0.46875000 0.45266272 0.39349112 0.44148199
## 1179 HiC_scaffold_81 54050146 0.29752066 0.07986111 0.00000000 0.13265306
## 1180 HiC_scaffold_82 5672063 0.50000000 0.50000000 0.48611111 0.49853908
## 1181 HiC_scaffold_82 8796823 0.50000000 0.46280992 0.48611111 0.49959184
## 1182 HiC_scaffold_82 13450959 0.49586777 0.48611111 0.48816568 0.49961420
## 1183 HiC_scaffold_82 26144442 0.50000000 0.41319444 0.31065089 0.43102041
## 1184 HiC_scaffold_82 26147011 0.48611111 0.33673469 0.09500000 0.36072531
## 1185 HiC_scaffold_82 28907834 0.49586777 0.49704142 0.49586777 0.49959184
## 1186 HiC_scaffold_82 34413793 0.50000000 0.48000000 0.49500000 0.49415632
## 1187 HiC_scaffold_82 34413800 0.49586777 0.50000000 0.45500000 0.49346939
## 1188 HiC_scaffold_82 36173035 0.49500000 0.39349112 0.48611111 0.48000000
## 1189 HiC_scaffold_82 40539273 0.45918367 0.48611111 0.47530864 0.47387755
## 1190 HiC_scaffold_82 41470256 0.31065089 0.35502959 0.23553719 0.30679328
## 1191 HiC_scaffold_83 23993605 0.40123457 0.35777778 0.48611111 0.42438272
## 1192 HiC_scaffold_83 35035961 0.44444444 0.45918367 0.35123967 0.42841490
## 1193 HiC_scaffold_83 43423618 0.46875000 0.49704142 0.26035503 0.44148199
## 1194 HiC_scaffold_83 46920654 0.47337278 0.49586777 0.41319444 0.48109568
## 1195 HiC_scaffold_83 46934197 0.32000000 0.45266272 0.40123457 0.39444850
## 1196 HiC_scaffold_84 356301 0.41319444 0.49744898 0.43388430 0.46347699
## 1197 HiC_scaffold_84 5761817 0.40816327 0.48347107 0.45500000 0.45061224
## 1198 HiC_scaffold_84 5769022 0.49586777 0.47337278 0.43388430 0.48530612
## 1199 HiC_scaffold_84 6288130 0.43622449 0.43622449 0.45500000 0.44148199
## 1200 HiC_scaffold_84 6288141 0.15277778 0.24489796 0.09500000 0.17554012
## 1201 HiC_scaffold_84 6288147 0.35123967 0.45918367 0.50000000 0.45918367
## 1202 HiC_scaffold_84 7069238 0.50000000 0.44444444 0.41319444 0.49959184
## 1203 HiC_scaffold_84 9131309 0.49382716 0.47704082 0.44444444 0.48530612
## 1204 HiC_scaffold_84 10148442 0.16528926 0.48979592 0.48000000 0.43102041
## 1205 HiC_scaffold_84 14659391 0.15277778 0.19132653 0.34567901 0.22408163
## 1206 HiC_scaffold_84 16302752 0.55785124 0.57397959 0.62809917 0.59104938
## 1207 HiC_scaffold_84 18463244 0.37500000 0.23111111 0.09500000 0.24489796
## 1208 HiC_scaffold_84 22909575 0.49704142 0.47337278 0.42000000 0.48611111
## 1209 HiC_scaffold_84 29275266 0.48979592 0.42000000 0.43388430 0.45918367
## 1210 HiC_scaffold_84 31184610 0.14201183 0.19132653 0.11718750 0.15673469
## 1211 HiC_scaffold_84 33093169 0.45918367 0.32986111 0.50000000 0.45061224
## 1212 HiC_scaffold_84 37675180 0.49586777 0.42603550 0.49586777 0.49632653
## 1213 HiC_scaffold_84 39501814 0.46280992 0.44444444 0.41319444 0.44148199
## 1214 HiC_scaffold_84 50169438 0.46875000 0.42603550 0.48000000 0.45918367
## 1215 HiC_scaffold_84 50169445 0.45266272 0.44444444 0.42000000 0.44122449
## 1216 HiC_scaffold_84 51231025 0.47530864 0.44444444 0.46875000 0.46141975
## 1217 HiC_scaffold_85 9792207 0.47530864 0.49744898 0.46875000 0.48530612
## 1218 HiC_scaffold_85 11784233 0.45500000 0.50000000 0.35123967 0.46693878
## 1219 HiC_scaffold_85 11911022 0.18000000 0.50000000 0.47337278 0.48979592
## 1220 HiC_scaffold_85 11911142 0.29752066 0.48979592 0.48000000 0.48000000
## 1221 HiC_scaffold_85 11913828 0.48816568 0.46875000 0.43388430 0.46875000
## 1222 HiC_scaffold_85 11913831 0.47530864 0.49111111 0.49704142 0.49671293
## 1223 HiC_scaffold_85 12353081 0.46875000 0.48979592 0.49586777 0.49415632
## 1224 HiC_scaffold_85 12414551 0.42975207 0.34948980 0.47520661 0.42091049
## 1225 HiC_scaffold_85 13043967 0.32000000 0.47337278 0.48611111 0.45061224
## 1226 HiC_scaffold_85 13221888 0.46280992 0.47704082 0.48000000 0.47387755
## 1227 HiC_scaffold_85 27008863 0.35502959 0.49704142 0.47530864 0.47387755
## 1228 HiC_scaffold_85 28992264 0.49744898 0.48979592 0.48347107 0.49967127
## 1229 HiC_scaffold_85 28992268 0.35502959 0.45918367 0.42000000 0.41782323
## 1230 HiC_scaffold_85 64310850 0.37500000 0.37500000 0.29752066 0.35265306
## 1231 HiC_scaffold_85 65135112 0.31404959 0.33777778 0.18000000 0.29012346
## 1232 HiC_scaffold_85 65563529 0.50000000 0.37500000 0.50000000 0.48000000
## 1233 HiC_scaffold_86 1949664 0.45266272 0.49111111 0.29752066 0.49178172
## 1234 HiC_scaffold_86 5340423 0.48979592 0.47337278 0.41319444 0.48816568
## 1235 HiC_scaffold_86 5483991 0.50000000 0.49704142 0.49586777 0.50000000
## 1236 HiC_scaffold_86 8928469 0.35123967 0.50000000 0.39669421 0.49961420
## 1237 HiC_scaffold_86 23727924 0.32000000 0.42603550 0.49652778 0.44122449
## 1238 HiC_scaffold_86 24825818 0.00000000 0.19132653 0.15277778 0.12924383
## 1239 HiC_scaffold_86 25333718 0.20414201 0.41319444 0.09500000 0.26489796
## 1240 HiC_scaffold_86 29668168 0.34375000 0.42975207 0.36982249 0.38078704
## 1241 HiC_scaffold_86 30914243 0.49586777 0.49704142 0.39669421 0.48000000
## 1242 HiC_scaffold_86 32040320 0.50000000 0.49744898 0.43388430 0.49035494
## 1243 HiC_scaffold_86 32040329 0.50000000 0.49744898 0.43388430 0.49035494
## 1244 HiC_scaffold_86 32125061 0.46875000 0.32986111 0.47337278 0.48210373
## 1245 HiC_scaffold_86 32144758 0.49652778 0.50000000 0.48000000 0.49632653
## 1246 HiC_scaffold_86 32153692 0.45500000 0.33673469 0.46280992 0.42000000
## 1247 HiC_scaffold_86 32534129 0.49500000 0.49744898 0.46875000 0.49652778
## 1248 HiC_scaffold_86 32605768 0.44444444 0.50000000 0.48816568 0.48530612
## 1249 HiC_scaffold_86 36355399 0.40816327 0.45500000 0.44444444 0.43479938
## 1250 HiC_scaffold_86 36357265 0.48347107 0.18000000 0.32986111 0.34729917
## 1251 HiC_scaffold_87 1253643 0.48000000 0.47704082 0.46875000 0.47530864
## 1252 HiC_scaffold_87 2137958 0.37500000 0.48816568 0.49586777 0.47783934
## 1253 HiC_scaffold_87 3980100 0.26035503 0.27777778 0.32000000 0.28358726
## 1254 HiC_scaffold_87 4395923 0.15277778 0.49704142 0.39349112 0.42209141
## 1255 HiC_scaffold_87 5489328 0.32986111 0.35502959 0.23553719 0.31327160
## 1256 HiC_scaffold_87 6300441 0.48816568 0.43622449 0.45500000 0.46347699
## 1257 HiC_scaffold_87 16306904 0.39669421 0.35777778 0.32000000 0.36072531
## 1258 HiC_scaffold_87 44780945 0.48347107 0.40816327 0.47337278 0.45810249
## 1259 HiC_scaffold_88 5584327 0.35123967 0.45918367 0.50000000 0.46141975
## 1260 HiC_scaffold_88 7104630 0.49704142 0.48816568 0.50000000 0.49959184
## 1261 HiC_scaffold_88 7104631 0.49704142 0.47337278 0.47530864 0.48530612
## 1262 HiC_scaffold_88 7104638 0.39349112 0.07396450 0.19753086 0.24489796
## 1263 HiC_scaffold_88 7104639 0.48816568 0.47337278 0.44444444 0.49346939
## 1264 HiC_scaffold_88 7104640 0.42603550 0.42603550 0.40123457 0.42000000
## 1265 HiC_scaffold_88 7479340 0.39669421 0.48979592 0.35123967 0.43479938
## 1266 HiC_scaffold_88 8773607 0.42000000 0.42603550 0.50000000 0.46875000
## 1267 HiC_scaffold_88 9883678 0.21875000 0.13265306 0.23553719 0.19284149
## 1268 HiC_scaffold_88 10878718 0.50000000 0.33673469 0.39669421 0.44148199
## 1269 HiC_scaffold_88 19365116 0.41319444 0.37500000 0.45500000 0.46875000
## 1270 HiC_scaffold_88 20477349 0.48347107 0.48816568 0.48347107 0.49836735
## 1271 HiC_scaffold_88 20557885 0.48000000 0.48000000 0.45266272 0.49134349
## 1272 HiC_scaffold_89 675045 0.33673469 0.46875000 0.48000000 0.43479938
## 1273 HiC_scaffold_89 2815845 0.24380165 0.47041420 0.37603306 0.37714286
## 1274 HiC_scaffold_89 2843940 0.39349112 0.48000000 0.45266272 0.44973230
## 1275 HiC_scaffold_89 3018830 0.21875000 0.13265306 0.25500000 0.19753086
## 1276 HiC_scaffold_89 13745506 0.46875000 0.45918367 0.37500000 0.44148199
## 1277 HiC_scaffold_89 30006907 0.49500000 0.49704142 0.45266272 0.48611111
## 1278 HiC_scaffold_89 36509388 0.49500000 0.48979592 0.46280992 0.50000000
## 1279 HiC_scaffold_89 38703735 0.45918367 0.49586777 0.32000000 0.46693878
## 1280 HiC_scaffold_89 38764895 0.37500000 0.15277778 0.16528926 0.24489796
## 1281 HiC_scaffold_89 42052609 0.35123967 0.50000000 0.32000000 0.44444444
## 1282 HiC_scaffold_89 42054991 0.35502959 0.45266272 0.37500000 0.47530864
## 1283 HiC_scaffold_89 44306958 0.43388430 0.43622449 0.49500000 0.47387755
## 1284 HiC_scaffold_89 44338206 0.39669421 0.46444444 0.34567901 0.42000000
## 1285 HiC_scaffold_89 45298973 0.27777778 0.18000000 0.35123967 0.26592798
## 1286 HiC_scaffold_9 3529921 0.27777778 0.46875000 0.39669421 0.45918367
## 1287 HiC_scaffold_9 5660454 0.49586777 0.49744898 0.39669421 0.48109568
## 1288 HiC_scaffold_9 5660461 0.23553719 0.06887755 0.09500000 0.13265306
## 1289 HiC_scaffold_9 5854070 0.35123967 0.33673469 0.35123967 0.34567901
## 1290 HiC_scaffold_9 6142415 0.47337278 0.49586777 0.48347107 0.50000000
## 1291 HiC_scaffold_9 6142436 0.47337278 0.49586777 0.50000000 0.49836735
## 1292 HiC_scaffold_9 6143781 0.49652778 0.49652778 0.49586777 0.49959184
## 1293 HiC_scaffold_9 6654825 0.45266272 0.49744898 0.48816568 0.48468750
## 1294 HiC_scaffold_9 7094545 0.16528926 0.35502959 0.35123967 0.30244898
## 1295 HiC_scaffold_9 7100208 0.50000000 0.48816568 0.49704142 0.49965374
## 1296 HiC_scaffold_9 7109988 0.45500000 0.39111111 0.48347107 0.48611111
## 1297 HiC_scaffold_9 7111922 0.49744898 0.48611111 0.48347107 0.49086925
## 1298 HiC_scaffold_9 8235781 0.23553719 0.43388430 0.45266272 0.39551020
## 1299 HiC_scaffold_9 8279558 0.41319444 0.32986111 0.23553719 0.33673469
## 1300 HiC_scaffold_9 15679481 0.40816327 0.49652778 0.41319444 0.45013850
## 1301 HiC_scaffold_9 18082611 0.32840237 0.07396450 0.18500000 0.20370370
## 1302 HiC_scaffold_9 18090830 0.48979592 0.49704142 0.29752066 0.47783934
## 1303 HiC_scaffold_9 30240531 0.29336735 0.16528926 0.18000000 0.22408163
## 1304 HiC_scaffold_90 10418696 0.50000000 0.33673469 0.29752066 0.42209141
## 1305 HiC_scaffold_90 11470224 0.48000000 0.40816327 0.44444444 0.47530864
## 1306 HiC_scaffold_90 13593319 0.46875000 0.45918367 0.46875000 0.46537396
## 1307 HiC_scaffold_90 16260161 0.46875000 0.45266272 0.16528926 0.46141975
## 1308 HiC_scaffold_90 22325499 0.46875000 0.48979592 0.50000000 0.49959184
## 1309 HiC_scaffold_90 23574204 0.46280992 0.48979592 0.29752066 0.44444444
## 1310 HiC_scaffold_90 23609908 0.49586777 0.50000000 0.48816568 0.49632653
## 1311 HiC_scaffold_90 23623078 0.42000000 0.47337278 0.42603550 0.44444444
## 1312 HiC_scaffold_90 23626883 0.41319444 0.42603550 0.50000000 0.45918367
## 1313 HiC_scaffold_90 23812663 0.06887755 0.00000000 0.29752066 0.12924383
## 1314 HiC_scaffold_90 25939283 0.35502959 0.47704082 0.49500000 0.47041636
## 1315 HiC_scaffold_90 25985714 0.45266272 0.44444444 0.39669421 0.43479938
## 1316 HiC_scaffold_90 30751272 0.49652778 0.44444444 0.35123967 0.45061224
## 1317 HiC_scaffold_90 31232025 0.00000000 0.37500000 0.15277778 0.22408163
## 1318 HiC_scaffold_90 31245699 0.43388430 0.45918367 0.42000000 0.49346939
## 1319 HiC_scaffold_90 31527975 0.42000000 0.45918367 0.43388430 0.44122449
## 1320 HiC_scaffold_90 31546172 0.48347107 0.43622449 0.25500000 0.42000000
## 1321 HiC_scaffold_90 38511996 0.40816327 0.50000000 0.48347107 0.49415632
## 1322 HiC_scaffold_90 38511999 0.49744898 0.49652778 0.32000000 0.48611111
## 1323 HiC_scaffold_90 38517279 0.50000000 0.49652778 0.50000000 0.49959184
## 1324 HiC_scaffold_90 40624104 0.48816568 0.46875000 0.35123967 0.45331790
## 1325 HiC_scaffold_91 5644765 0.48000000 0.47704082 0.43388430 0.49959184
## 1326 HiC_scaffold_91 5867214 0.48611111 0.48611111 0.46280992 0.49959184
## 1327 HiC_scaffold_91 5867226 0.49704142 0.48611111 0.44444444 0.49963477
## 1328 HiC_scaffold_91 7704263 0.42000000 0.48816568 0.50000000 0.48530612
## 1329 HiC_scaffold_91 7871360 0.47337278 0.39669421 0.49586777 0.48000000
## 1330 HiC_scaffold_91 8538014 0.31065089 0.00000000 0.07986111 0.15277778
## 1331 HiC_scaffold_91 13230485 0.49586777 0.45266272 0.48347107 0.48000000
## 1332 HiC_scaffold_91 28696118 0.42000000 0.50000000 0.39349112 0.49836735
## 1333 HiC_scaffold_91 28696625 0.48000000 0.47704082 0.49586777 0.49346939
## 1334 HiC_scaffold_91 42177482 0.49652778 0.48816568 0.42000000 0.48000000
## 1335 HiC_scaffold_91 46813640 0.50000000 0.60069444 0.54437870 0.55259313
## 1336 HiC_scaffold_92 23783035 0.20414201 0.47041420 0.14497041 0.28961210
## 1337 HiC_scaffold_92 23783036 0.20414201 0.47041420 0.14497041 0.28961210
## 1338 HiC_scaffold_92 24712793 0.48347107 0.35502959 0.39669421 0.42000000
## 1339 HiC_scaffold_92 28698258 0.41319444 0.48347107 0.44444444 0.48000000
## 1340 HiC_scaffold_92 40691582 0.48611111 0.29752066 0.15277778 0.33959184
## 1341 HiC_scaffold_92 43967712 0.48347107 0.44444444 0.50000000 0.49836735
## 1342 HiC_scaffold_92 47147572 0.49500000 0.49777778 0.42000000 0.48530612
## 1343 HiC_scaffold_92 49042714 0.46280992 0.40816327 0.48347107 0.45331790
## 1344 HiC_scaffold_92 49042715 0.46280992 0.40816327 0.48347107 0.45331790
## 1345 HiC_scaffold_92 53634002 0.49586777 0.26035503 0.29752066 0.38204082
## 1346 HiC_scaffold_92 58211868 0.50000000 0.50000000 0.47530864 0.49836735
## 1347 HiC_scaffold_92 60114155 0.39349112 0.48347107 0.48347107 0.45918367
## 1348 HiC_scaffold_92 63603483 0.32000000 0.47704082 0.42603550 0.42841490
## 1349 HiC_scaffold_92 64797225 0.32000000 0.24489796 0.16528926 0.25469388
## 1350 HiC_scaffold_92 68367476 0.40277778 0.33777778 0.15625000 0.31065089
## 1351 HiC_scaffold_93 1912167 0.48816568 0.45266272 0.34567901 0.45061224
## 1352 HiC_scaffold_93 2485978 0.48611111 0.32000000 0.42968750 0.42000000
## 1353 HiC_scaffold_93 3227638 0.45500000 0.24489796 0.48611111 0.45331790
## 1354 HiC_scaffold_93 3227641 0.39669421 0.42603550 0.39669421 0.48979592
## 1355 HiC_scaffold_93 13971208 0.48347107 0.45918367 0.41319444 0.45580716
## 1356 HiC_scaffold_93 13987080 0.44444444 0.44444444 0.44444444 0.44444444
## 1357 HiC_scaffold_93 21125468 0.46280992 0.47704082 0.48000000 0.47387755
## 1358 HiC_scaffold_93 21845293 0.39669421 0.35502959 0.49586777 0.45061224
## 1359 HiC_scaffold_93 21845310 0.48611111 0.35502959 0.43388430 0.43479938
## 1360 HiC_scaffold_93 21846342 0.32000000 0.42603550 0.48611111 0.43102041
## 1361 HiC_scaffold_93 21846356 0.50000000 0.29336735 0.48347107 0.45061224
## 1362 HiC_scaffold_93 22589723 0.50000000 0.47337278 0.50000000 0.49652778
## 1363 HiC_scaffold_93 22619278 0.32000000 0.26035503 0.15277778 0.24489796
## 1364 HiC_scaffold_93 22631258 0.49704142 0.33673469 0.39669421 0.43213296
## 1365 HiC_scaffold_93 22631266 0.49704142 0.33673469 0.43388430 0.44148199
## 1366 HiC_scaffold_94 3110102 0.49652778 0.48611111 0.32986111 0.49382716
## 1367 HiC_scaffold_94 3205919 0.50000000 0.42603550 0.48000000 0.48000000
## 1368 HiC_scaffold_94 9023846 0.34567901 0.44444444 0.48347107 0.44122449
## 1369 HiC_scaffold_94 11572820 0.49652778 0.33673469 0.32000000 0.43479938
## 1370 HiC_scaffold_94 12368532 0.47704082 0.39111111 0.49652778 0.47590720
## 1371 HiC_scaffold_94 42179418 0.48611111 0.48816568 0.49652778 0.49963477
## 1372 HiC_scaffold_94 42179519 0.41319444 0.47337278 0.48347107 0.46141975
## 1373 HiC_scaffold_94 51646206 0.26500000 0.27218935 0.29166667 0.27714286
## 1374 HiC_scaffold_94 52781289 0.46875000 0.50000000 0.46280992 0.48685172
## 1375 HiC_scaffold_94 53790035 0.50000000 0.40816327 0.49586777 0.48000000
## 1376 HiC_scaffold_94 53792738 0.48347107 0.46875000 0.49652778 0.49346939
## 1377 HiC_scaffold_94 56768905 0.39349112 0.39111111 0.47337278 0.42385485
## 1378 HiC_scaffold_946 81276 0.50000000 0.41319444 0.44444444 0.46875000
## 1379 HiC_scaffold_95 3189690 0.34567901 0.47337278 0.35502959 0.40816327
## 1380 HiC_scaffold_95 4397298 0.35123967 0.19132653 0.29752066 0.27777778
## 1381 HiC_scaffold_95 9469157 0.50000000 0.50000000 0.49500000 0.49959184
## 1382 HiC_scaffold_95 10641411 0.49586777 0.49652778 0.50000000 0.49836735
## 1383 HiC_scaffold_95 10949821 0.44444444 0.49744898 0.42603550 0.49961420
## 1384 HiC_scaffold_95 12993394 0.48347107 0.48979592 0.45266272 0.50000000
## 1385 HiC_scaffold_95 15515793 0.32000000 0.48816568 0.49652778 0.48979592
## 1386 HiC_scaffold_95 15608785 0.45266272 0.48979592 0.45500000 0.49086925
## 1387 HiC_scaffold_95 15609137 0.43388430 0.50000000 0.39349112 0.46347699
## 1388 HiC_scaffold_95 16295316 0.16528926 0.42603550 0.50000000 0.42000000
## 1389 HiC_scaffold_95 22656165 0.27777778 0.48000000 0.46280992 0.44122449
## 1390 HiC_scaffold_95 25885727 0.50000000 0.48979592 0.50000000 0.49853908
## 1391 HiC_scaffold_96 10460019 0.21875000 0.49704142 0.45500000 0.48000000
## 1392 HiC_scaffold_96 27155785 0.50000000 0.37500000 0.48816568 0.47662527
## 1393 HiC_scaffold_96 37939434 0.35502959 0.50000000 0.42000000 0.45580716
## 1394 HiC_scaffold_96 51115048 0.49744898 0.31065089 0.40123457 0.45331790
## 1395 HiC_scaffold_96 51116511 0.35502959 0.39349112 0.42000000 0.38850309
## 1396 HiC_scaffold_96 51915040 0.47337278 0.46875000 0.48000000 0.49836735
## 1397 HiC_scaffold_96 52681287 0.48611111 0.31065089 0.43388430 0.42438272
## 1398 HiC_scaffold_96 53276519 0.31065089 0.49586777 0.46875000 0.44444444
## 1399 HiC_scaffold_97 1736926 0.50000000 0.43622449 0.46875000 0.47662527
## 1400 HiC_scaffold_97 1736994 0.49704142 0.48816568 0.48611111 0.49134349
## 1401 HiC_scaffold_97 3863543 0.27777778 0.14201183 0.48000000 0.32000000
## 1402 HiC_scaffold_97 4200445 0.41319444 0.48611111 0.35123967 0.43102041
## 1403 HiC_scaffold_97 4799162 0.37500000 0.45918367 0.43388430 0.43102041
## 1404 HiC_scaffold_97 5027892 0.49500000 0.40816327 0.37500000 0.45331790
## 1405 HiC_scaffold_97 8007933 0.50000000 0.47704082 0.49500000 0.49836735
## 1406 HiC_scaffold_97 17997210 0.39669421 0.40816327 0.48000000 0.43102041
## 1407 HiC_scaffold_97 18604647 0.18000000 0.00000000 0.16528926 0.10775510
## 1408 HiC_scaffold_97 20239636 0.26035503 0.49586777 0.43388430 0.42000000
## 1409 HiC_scaffold_98 15154096 0.21875000 0.49744898 0.47530864 0.45918367
## 1410 HiC_scaffold_98 22342667 0.39349112 0.49586777 0.44444444 0.49652778
## 1411 HiC_scaffold_98 22634293 0.15277778 0.15277778 0.23553719 0.18000000
## 1412 HiC_scaffold_98 22634294 0.15277778 0.15277778 0.23553719 0.18000000
## 1413 HiC_scaffold_98 22721138 0.21875000 0.07986111 0.35123967 0.22408163
## 1414 HiC_scaffold_98 22869378 0.45500000 0.43622449 0.44444444 0.44444444
## 1415 HiC_scaffold_98 24108405 0.35123967 0.49744898 0.43388430 0.45331790
## 1416 HiC_scaffold_98 27359592 0.49500000 0.50000000 0.35123967 0.48000000
## 1417 HiC_scaffold_98 28549834 0.49652778 0.48347107 0.48611111 0.49959184
## 1418 HiC_scaffold_98 28867520 0.45500000 0.37500000 0.48347107 0.44122449
## 1419 HiC_scaffold_98 28867524 0.57438017 0.64285714 0.57438017 0.60648148
## 1420 HiC_scaffold_98 29431717 0.48347107 0.43622449 0.42000000 0.45061224
## 1421 HiC_scaffold_98 29675109 0.43388430 0.48611111 0.50000000 0.48530612
## 1422 HiC_scaffold_99 1163244 0.44444444 0.44444444 0.47530864 0.45331790
## 1423 HiC_scaffold_99 1451611 0.29752066 0.45918367 0.48347107 0.43479938
## 1424 HiC_scaffold_99 2021961 0.00000000 0.35714286 0.23553719 0.21572022
## 1425 HiC_scaffold_99 5134392 0.44444444 0.27777778 0.50000000 0.44122449
## 1426 HiC_scaffold_99 5239109 0.39669421 0.35777778 0.50000000 0.43479938
## 1427 HiC_scaffold_99 6917738 0.49586777 0.14201183 0.29752066 0.38204082
## 1428 HiC_scaffold_99 11221970 0.44444444 0.37500000 0.47337278 0.43479938
## 1429 HiC_scaffold_99 25982503 0.35502959 0.20414201 0.39669421 0.32322863
## n_Ambient n_Low n_Moderate Gst Htmax Gstmax Gprimest
## 1 26 26 22 8.059374e-03 0.8228634 0.4254405 1.894360e-02
## 2 22 24 24 1.552189e-02 0.8175510 0.4470605 3.471988e-02
## 3 20 30 24 1.040592e-02 0.7768444 0.5491694 1.894846e-02
## 4 26 28 26 1.239786e-02 0.8112500 0.4658731 2.661209e-02
## 5 26 24 26 2.897787e-02 0.7551939 0.6424893 4.510249e-02
## 6 20 30 22 6.413813e-02 0.8101852 0.4509610 1.422254e-01
## 7 22 26 22 2.597403e-02 0.8220408 0.4312539 6.022907e-02
## 8 28 24 18 1.541782e-04 0.8077551 0.4538487 3.397128e-04
## 9 22 28 20 6.167763e-03 0.8277551 0.4040927 1.526324e-02
## 10 26 22 22 8.636855e-02 0.8167347 0.4479858 1.927931e-01
## 11 28 26 16 7.334087e-02 0.8114286 0.4294614 1.707741e-01
## 12 28 26 16 7.334087e-02 0.8114286 0.4294614 1.707741e-01
## 13 24 30 20 8.496732e-03 0.8031410 0.4711081 1.803563e-02
## 14 20 28 26 6.529418e-03 0.8195763 0.4297727 1.519272e-02
## 15 26 26 22 9.883450e-03 0.8108108 0.4648019 2.126379e-02
## 16 24 28 18 7.517818e-02 0.8138776 0.4360164 1.724205e-01
## 17 26 28 26 5.263351e-02 0.8434375 0.3692414 1.425450e-01
## 18 26 28 26 3.923469e-02 0.8265625 0.4191820 9.359822e-02
## 19 26 26 20 4.807692e-03 0.8279321 0.4064091 1.182969e-02
## 20 24 26 22 4.902790e-02 0.7233796 0.7692308 6.373626e-02
## 21 26 28 20 1.206453e-02 0.8170197 0.4395663 2.744644e-02
## 22 22 26 24 1.566995e-02 0.8179012 0.4446893 3.523797e-02
## 23 24 28 20 8.303923e-02 0.8136574 0.4473887 1.856087e-01
## 24 26 28 22 1.519787e-02 0.8254848 0.4183719 3.632622e-02
## 25 24 28 22 2.318641e-02 0.8224982 0.4274450 5.424420e-02
## 26 24 30 18 2.553191e-03 0.8090278 0.4411063 5.788154e-03
## 27 24 28 20 1.096860e-02 0.8279321 0.4045533 2.711286e-02
## 28 22 28 20 1.284342e-02 0.8273469 0.4053684 3.168333e-02
## 29 22 26 22 2.629428e-02 0.7922449 0.5149029 5.106649e-02
## 30 22 28 20 5.612050e-02 0.8175510 0.4397041 1.276324e-01
## 31 22 24 24 2.046955e-02 0.8208163 0.4344929 4.711137e-02
## 32 22 30 22 4.883619e-03 0.7016070 0.8212831 5.946328e-03
## 33 28 30 20 3.075397e-03 0.8021039 0.4704859 6.536639e-03
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## 286 24 22 24 1.413281e-03 0.8097959 0.4684942 3.016645e-03
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## 301 24 24 26 5.432281e-02 0.8093499 0.4674165 1.162193e-01
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## 352 20 28 22 7.552267e-02 0.8110204 0.4598298 1.642405e-01
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## 405 20 28 24 3.144880e-02 0.8221451 0.4223235 7.446614e-02
## 406 24 24 26 3.526139e-02 0.8181154 0.4452753 7.919008e-02
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## 450 24 26 22 1.349813e-01 0.8028549 0.4816539 2.802454e-01
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## 482 24 24 22 8.783487e-04 0.8163265 0.4484848 1.958480e-03
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## 492 24 28 20 5.776902e-02 0.8155864 0.4508853 1.281235e-01
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## 495 24 26 24 9.253066e-02 0.8093499 0.4725539 1.958097e-01
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## 517 26 26 24 6.146305e-02 0.7243767 0.7559445 8.130630e-02
## 518 26 26 18 5.811069e-02 0.8073469 0.4552470 1.276465e-01
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## 520 24 30 22 4.044920e-02 0.8071330 0.4751492 8.512947e-02
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## 527 20 26 24 1.258903e-01 0.7836735 0.5410924 2.326595e-01
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## 529 20 28 22 4.803379e-02 0.8212245 0.4246566 1.131121e-01
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## 531 24 24 22 6.123737e-03 0.8285714 0.4124869 1.484589e-02
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## 533 26 24 22 5.286191e-02 0.8163580 0.4485472 1.178514e-01
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## 782 22 26 22 2.169259e-02 0.8036735 0.4887363 4.438507e-02
## 783 26 30 26 1.072767e-01 0.7917906 0.5117186 2.096400e-01
## 784 26 30 24 1.297314e-02 0.8043750 0.4846293 2.676920e-02
## 785 18 26 26 3.669028e-03 0.8269388 0.4020047 9.126829e-03
## 786 22 22 26 4.601081e-02 0.8040816 0.4886231 9.416422e-02
## 787 26 28 24 5.341387e-02 0.7370151 0.7128998 7.492478e-02
## 788 24 24 22 7.485570e-03 0.8253061 0.4227513 1.770680e-02
## 789 20 28 24 1.233766e-02 0.7276235 0.7234964 1.705283e-02
## 790 22 30 24 1.422078e-02 0.7236842 0.7358678 1.932518e-02
## 791 22 26 26 6.869218e-02 0.8130022 0.4611301 1.489649e-01
## 792 24 22 24 4.591557e-03 0.8310204 0.4054928 1.132340e-02
## 793 26 26 18 1.360544e-02 0.7987755 0.4813490 2.826523e-02
## 794 22 26 22 3.895056e-02 0.8138776 0.4486256 8.682197e-02
## 795 28 24 18 4.277146e-02 0.8016327 0.4853191 8.813061e-02
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## 798 24 28 18 1.002859e-01 0.8106122 0.4454935 2.251121e-01
## 799 24 24 22 5.803196e-02 0.8183673 0.4413965 1.314735e-01
## 800 22 28 20 1.421644e-01 0.8400000 0.3630842 3.915468e-01
## 801 24 24 22 1.676974e-01 0.7816327 0.5527732 3.033747e-01
## 802 22 30 22 7.068467e-03 0.8257852 0.4058220 1.741765e-02
## 803 18 30 22 1.497906e-01 0.7987755 0.4834446 3.098403e-01
## 804 26 24 22 8.189588e-02 0.8074846 0.4670346 1.753529e-01
## 805 24 28 22 3.807773e-02 0.7136596 0.7991483 4.764789e-02
## 806 26 26 18 7.860344e-02 0.7600000 0.5922499 1.327201e-01
## 807 24 24 24 3.906250e-02 0.8248457 0.4246960 9.197756e-02
## 808 26 18 26 3.076923e-02 0.7057143 0.8178138 3.762376e-02
## 809 28 26 16 8.396784e-03 0.8053061 0.4567040 1.838562e-02
## 810 22 28 20 7.670455e-02 0.8146939 0.4449126 1.724036e-01
## 811 18 30 22 1.146877e-02 0.8183673 0.4137837 2.771681e-02
## 812 26 30 18 7.214094e-02 0.7951059 0.4778928 1.509563e-01
## 813 22 30 18 1.559152e-02 0.8024490 0.4712435 3.308592e-02
## 814 28 26 22 1.843271e-02 0.8286011 0.4081063 4.516644e-02
## 815 22 26 22 7.072473e-03 0.8073469 0.4699032 1.505091e-02
## 816 22 22 26 5.645080e-02 0.8081633 0.4738998 1.191197e-01
## 817 24 22 26 3.402847e-03 0.7800926 0.5583823 6.094117e-03
## 818 22 28 20 1.891837e-02 0.7848980 0.5403252 3.501294e-02
## 819 26 30 22 1.436588e-02 0.8122945 0.4507413 3.187167e-02
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## 821 22 26 22 9.965035e-03 0.8269388 0.4136022 2.409328e-02
## 822 22 26 24 1.845252e-02 0.7422840 0.6837009 2.698916e-02
## 823 20 28 22 2.811005e-02 0.8228571 0.4137807 6.793466e-02
## 824 20 28 22 1.322044e-02 0.8277551 0.4044289 3.268916e-02
## 825 26 22 26 9.914918e-02 0.7954711 0.5036635 1.968560e-01
## 826 18 28 24 1.184833e-01 0.7934694 0.4993856 2.372581e-01
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## 828 22 28 20 5.285412e-03 0.8208163 0.4257267 1.241504e-02
## 829 24 28 24 8.166667e-02 0.8026316 0.4849727 1.683944e-01
## 830 28 26 22 2.444863e-02 0.8102493 0.4580270 5.337814e-02
## 831 24 24 24 3.645833e-02 0.8094136 0.4709247 7.741861e-02
## 832 22 28 20 3.538298e-02 0.7979592 0.4922809 7.187560e-02
## 833 22 22 26 2.980923e-02 0.8093878 0.4711164 6.327360e-02
## 834 18 30 22 2.336221e-02 0.8216327 0.4076131 5.731465e-02
## 835 26 30 18 3.880804e-03 0.8257852 0.3968655 9.778638e-03
## 836 24 22 24 6.870552e-02 0.8016327 0.4992633 1.376138e-01
## 837 24 26 22 8.043884e-03 0.8283179 0.4127731 1.948742e-02
## 838 22 26 22 5.217332e-02 0.8236735 0.4251041 1.227307e-01
## 839 18 26 26 1.194255e-01 0.7922449 0.5331730 2.239902e-01
## 840 20 26 24 1.699359e-02 0.7983673 0.4974405 3.416206e-02
## 841 22 28 24 5.887024e-03 0.8265157 0.4144266 1.420523e-02
## 842 24 30 24 5.932762e-03 0.8300460 0.4027723 1.472982e-02
## 843 26 24 22 1.872740e-02 0.8287037 0.4097746 4.570172e-02
## 844 20 30 22 1.768595e-02 0.7962963 0.4764799 3.711793e-02
## 845 24 28 18 1.588747e-02 0.7342857 0.6996788 2.270681e-02
## 846 22 22 26 4.520549e-02 0.8069388 0.4779298 9.458605e-02
## 847 24 30 22 4.460227e-02 0.8005540 0.4842836 9.209949e-02
## 848 24 26 20 9.558150e-03 0.7681633 0.5874036 1.627186e-02
## 849 26 22 22 1.918082e-02 0.8289796 0.4084178 4.696372e-02
## 850 28 24 24 1.205773e-03 0.8182133 0.4407936 2.735460e-03
## 851 22 24 26 1.740967e-02 0.8109568 0.4614919 3.772477e-02
## 852 26 22 22 5.034965e-02 0.7040816 0.8210804 6.132122e-02
## 853 26 26 24 4.385965e-02 0.7870499 0.5444347 8.055999e-02
## 854 24 24 24 2.110390e-02 0.8217593 0.4338028 4.864859e-02
## 855 26 26 18 8.216783e-02 0.6865306 0.8559407 9.599711e-02
## 856 28 26 24 1.330532e-02 0.8149244 0.4519247 2.944146e-02
## 857 22 28 20 2.548209e-02 0.6971429 0.8493719 3.000110e-02
## 858 24 26 22 5.706889e-02 0.8074846 0.4706431 1.212573e-01
## 859 28 28 24 1.845200e-02 0.8240625 0.4226845 4.365430e-02
## 860 22 26 22 7.690367e-02 0.8028571 0.4926959 1.560875e-01
## 861 22 22 26 8.602953e-02 0.8069388 0.4799106 1.792616e-01
## 862 26 24 20 6.021228e-02 0.8032653 0.4728020 1.273520e-01
## 863 26 24 20 6.021228e-02 0.8032653 0.4728020 1.273520e-01
## 864 26 28 20 9.626308e-03 0.8235939 0.4145596 2.322056e-02
## 865 26 26 20 2.742181e-02 0.7195216 0.7627222 3.595255e-02
## 866 22 28 22 7.000812e-02 0.8024691 0.4849276 1.443682e-01
## 867 26 22 24 5.062217e-02 0.6990741 0.8574885 5.903539e-02
## 868 28 24 24 9.299674e-02 0.7918975 0.5197285 1.789333e-01
## 869 26 26 24 3.381995e-02 0.7416898 0.6910209 4.894201e-02
## 870 20 24 26 1.135150e-03 0.7151020 0.7810707 1.453325e-03
## 871 26 24 22 2.931684e-03 0.7993827 0.4995410 5.868755e-03
## 872 26 24 20 3.919314e-03 0.8146939 0.4490616 8.727788e-03
## 873 28 24 18 3.696206e-02 0.7571429 0.6153040 6.007122e-02
## 874 20 30 22 1.015664e-03 0.8244599 0.4058451 2.502591e-03
## 875 20 28 22 1.199100e-01 0.7053061 0.8044245 1.490631e-01
## 876 24 24 22 3.404538e-02 0.7746939 0.5765678 5.904835e-02
## 877 24 24 22 6.791126e-02 0.7657143 0.6104704 1.112441e-01
## 878 18 26 26 5.115255e-03 0.6946939 0.8456818 6.048676e-03
## 879 18 30 22 5.516498e-02 0.8077551 0.4628907 1.191750e-01
## 880 24 26 24 2.165733e-02 0.8221329 0.4328133 5.003851e-02
## 881 22 26 24 5.827506e-04 0.8140432 0.4543466 1.282612e-03
## 882 26 26 20 9.210192e-02 0.8113426 0.4512894 2.040862e-01
## 883 26 26 20 9.210192e-02 0.8113426 0.4512894 2.040862e-01
## 884 20 28 24 5.228105e-02 0.8190586 0.4254761 1.228766e-01
## 885 20 26 24 1.073336e-01 0.8048980 0.4676594 2.295124e-01
## 886 26 28 26 2.780657e-02 0.8115625 0.4643016 5.988904e-02
## 887 20 28 24 1.400922e-02 0.7415123 0.6819385 2.054323e-02
## 888 26 24 20 5.358286e-02 0.8020408 0.4793502 1.117823e-01
## 889 26 22 22 6.209790e-02 0.8102041 0.4684434 1.325622e-01
## 890 22 26 24 2.211538e-02 0.8263889 0.4156432 5.320762e-02
## 891 20 26 24 4.208473e-02 0.8044898 0.4746289 8.866870e-02
## 892 26 28 20 1.183281e-02 0.7611395 0.6016984 1.966568e-02
## 893 24 26 20 8.146368e-03 0.8130612 0.4502980 1.809106e-02
## 894 18 28 26 4.203733e-02 0.7476852 0.6263056 6.711952e-02
## 895 24 24 22 1.025562e-02 0.8044898 0.4832841 2.122068e-02
## 896 26 28 18 1.562778e-02 0.8105710 0.4494825 3.476838e-02
## 897 18 26 26 9.811033e-02 0.8102041 0.4506879 2.176902e-01
## 898 20 26 26 4.695305e-03 0.8217593 0.4243120 1.106569e-02
## 899 24 28 20 4.820542e-02 0.7820216 0.5271548 9.144452e-02
## 900 22 30 20 1.781704e-01 0.7966821 0.4941669 3.605470e-01
## 901 26 28 22 1.166206e-02 0.8112881 0.4621721 2.523316e-02
## 902 28 18 24 4.083571e-02 0.7869388 0.5343476 7.642161e-02
## 903 28 18 24 4.083571e-02 0.7869388 0.5343476 7.642161e-02
## 904 28 20 22 6.435529e-03 0.7689796 0.5865422 1.097198e-02
## 905 22 28 24 9.542208e-02 0.7947407 0.5011519 1.904055e-01
## 906 22 26 22 9.946032e-02 0.7975510 0.4911997 2.024845e-01
## 907 24 26 20 3.488575e-03 0.8036735 0.4792228 7.279651e-03
## 908 22 26 22 7.264729e-02 0.8142857 0.4473071 1.624103e-01
## 909 28 24 22 9.474033e-03 0.8151936 0.4461575 2.123473e-02
## 910 24 28 20 4.910714e-02 0.7283951 0.7421308 6.617047e-02
## 911 22 26 24 5.977356e-03 0.8271605 0.4158262 1.437465e-02
## 912 22 26 22 2.009794e-01 0.7808163 0.5484886 3.664240e-01
## 913 22 28 24 3.222912e-02 0.7067202 0.8274517 3.894985e-02
## 914 22 26 22 6.115342e-03 0.7644898 0.6067974 1.007806e-02
## 915 24 24 22 3.533692e-02 0.8261224 0.4204396 8.404756e-02
## 916 24 28 20 6.704090e-02 0.8159722 0.4499291 1.490033e-01
## 917 24 26 22 6.218055e-02 0.7962963 0.5001931 1.243131e-01
## 918 22 26 22 7.061470e-02 0.8114286 0.4651827 1.517999e-01
## 919 20 28 22 6.732166e-02 0.8142857 0.4441331 1.515799e-01
## 920 26 22 22 1.493472e-01 0.7959184 0.5009503 2.981277e-01
## 921 26 26 22 7.549176e-02 0.8195763 0.4363960 1.729891e-01
## 922 30 24 24 6.271186e-03 0.7587114 0.6189558 1.013188e-02
## 923 24 26 22 2.877331e-02 0.8086420 0.4661960 6.171934e-02
## 924 24 28 22 4.304709e-02 0.8075237 0.4698022 9.162811e-02
## 925 26 26 22 3.655041e-02 0.8159240 0.4445286 8.222284e-02
## 926 26 24 24 5.021046e-02 0.7428780 0.6899409 7.277501e-02
## 927 22 26 24 3.425938e-02 0.8009259 0.4882877 7.016227e-02
## 928 24 28 20 5.035866e-02 0.8097994 0.4683999 1.075121e-01
## 929 24 26 20 3.307692e-02 0.8257143 0.4144929 7.980093e-02
## 930 20 26 24 2.029915e-02 0.8244898 0.4179995 4.856261e-02
## 931 22 26 26 3.333940e-02 0.8140979 0.4496670 7.414241e-02
## 932 20 24 26 4.578755e-03 0.8306122 0.4007907 1.142430e-02
## 933 26 26 18 1.261132e-02 0.8146939 0.4340818 2.905286e-02
## 934 28 26 20 2.295604e-02 0.8049671 0.4680341 4.904780e-02
## 935 20 28 22 9.881763e-02 0.8069388 0.4707776 2.099030e-01
## 936 22 26 24 2.797203e-03 0.8213735 0.4309059 6.491447e-03
## 937 22 28 20 1.757129e-01 0.7987755 0.4857156 3.617609e-01
## 938 26 24 20 2.180359e-04 0.8044898 0.4780438 4.561003e-04
## 939 22 28 20 6.145640e-03 0.8212245 0.4190990 1.466393e-02
## 940 20 26 24 1.728480e-02 0.8212245 0.4256098 4.061184e-02
## 941 22 28 20 8.640339e-02 0.7955102 0.5176547 1.669132e-01
## 942 22 24 24 3.974359e-02 0.7097959 0.8205386 4.843598e-02
## 943 26 28 20 7.366587e-02 0.7363039 0.7059257 1.043536e-01
## 944 26 28 20 7.366587e-02 0.7363039 0.7059257 1.043536e-01
## 945 24 22 24 8.215488e-03 0.8183673 0.4435124 1.852369e-02
## 946 24 26 20 3.155774e-02 0.8097959 0.4611087 6.843882e-02
## 947 22 28 26 1.758325e-02 0.8261773 0.4099735 4.288876e-02
## 948 26 24 22 1.929888e-03 0.8240741 0.4243341 4.548040e-03
## 949 26 24 22 1.412563e-01 0.7874228 0.5258186 2.686407e-01
## 950 26 24 22 1.412563e-01 0.7874228 0.5258186 2.686407e-01
## 951 18 28 24 8.888889e-03 0.7967347 0.4922587 1.805735e-02
## 952 26 22 24 3.335126e-02 0.8163580 0.4536333 7.352031e-02
## 953 26 22 22 7.402122e-02 0.7922449 0.5091024 1.453955e-01
## 954 18 28 24 3.356481e-02 0.7689796 0.5567941 6.028228e-02
## 955 22 24 24 3.179522e-02 0.7004082 0.8510454 3.736020e-02
## 956 26 26 22 2.292048e-02 0.7972973 0.5018371 4.567314e-02
## 957 24 26 20 7.906590e-02 0.7942857 0.5002536 1.580516e-01
## 958 24 30 24 1.471380e-02 0.8254438 0.4173039 3.525921e-02
## 959 26 28 24 5.199461e-02 0.8030901 0.4858342 1.070213e-01
## 960 28 28 22 6.624688e-03 0.8267587 0.4134543 1.602278e-02
## 961 22 26 22 7.342657e-02 0.8138776 0.4535354 1.618982e-01
## 962 18 28 24 2.171605e-01 0.7881633 0.5439179 3.992523e-01
## 963 18 30 22 1.420428e-02 0.8175510 0.4148222 3.424185e-02
## 964 20 28 22 7.633183e-02 0.7889796 0.5083008 1.501706e-01
## 965 16 30 24 5.042614e-02 0.7869388 0.4799015 1.050760e-01
## 966 18 30 24 1.315156e-02 0.8190586 0.4203486 3.128728e-02
## 967 26 24 20 2.803953e-02 0.8236735 0.4220255 6.644037e-02
## 968 26 28 24 2.450397e-02 0.8191979 0.4363105 5.616177e-02
## 969 24 28 18 2.328987e-02 0.8195918 0.4279825 5.441781e-02
## 970 24 26 22 5.706889e-02 0.8074846 0.4706431 1.212573e-01
## 971 20 28 22 1.038642e-02 0.8273469 0.4038884 2.571606e-02
## 972 26 28 16 2.924943e-02 0.8204082 0.4127201 7.086990e-02
## 973 20 28 22 3.114233e-02 0.8012245 0.4921271 6.328107e-02
## 974 24 30 26 4.363195e-02 0.7646875 0.6201104 7.036158e-02
## 975 30 26 22 3.770335e-02 0.8244576 0.4167899 9.046128e-02
## 976 20 26 24 4.155904e-02 0.8232653 0.4198035 9.899642e-02
## 977 22 26 24 9.324009e-03 0.8132716 0.4586059 2.033120e-02
## 978 20 28 24 1.145879e-01 0.7847222 0.5472819 2.093764e-01
## 979 22 28 20 3.440630e-02 0.8191837 0.4279567 8.039669e-02
## 980 20 26 24 3.326482e-02 0.8106122 0.4626004 7.190832e-02
## 981 24 28 22 8.608606e-02 0.7837838 0.5400619 1.594003e-01
## 982 22 30 26 3.993528e-02 0.8234714 0.4185955 9.540302e-02
## 983 22 30 18 2.765416e-02 0.8073469 0.4376321 6.319043e-02
## 984 22 28 24 2.005171e-02 0.8283419 0.4089201 4.903576e-02
## 985 24 24 22 6.988479e-02 0.8036735 0.4893578 1.428092e-01
## 986 20 28 24 4.538939e-04 0.8171296 0.4355726 1.042063e-03
## 987 26 26 20 1.172616e-02 0.8074846 0.4678525 2.506380e-02
## 988 22 28 22 7.886156e-02 0.8028549 0.4798954 1.643307e-01
## 989 24 28 26 1.113904e-02 0.7557528 0.6455757 1.725443e-02
## 990 26 26 18 4.007816e-02 0.8204082 0.4192712 9.559007e-02
## 991 22 30 24 1.338117e-02 0.8244460 0.4120067 3.247804e-02
## 992 26 24 22 7.102273e-03 0.8294753 0.4088795 1.737009e-02
## 993 26 24 22 7.102273e-03 0.8294753 0.4088795 1.737009e-02
## 994 22 26 22 1.989122e-02 0.8142857 0.4473071 4.446882e-02
## 995 22 26 24 4.229932e-02 0.8059414 0.4833276 8.751687e-02
## 996 24 30 16 6.828704e-02 0.7657143 0.5708955 1.196139e-01
## 997 20 26 24 8.512123e-02 0.7906122 0.5139854 1.656102e-01
## 998 20 28 24 5.914955e-02 0.8101852 0.4641633 1.274326e-01
## 999 24 26 26 3.032544e-02 0.8116343 0.4622112 6.560949e-02
## 1000 22 22 26 3.481800e-03 0.8265306 0.4148839 8.392228e-03
## 1001 22 30 20 2.949225e-02 0.8070988 0.4451590 6.625103e-02
## 1002 20 28 24 1.921677e-02 0.8267747 0.4073195 4.717861e-02
## 1003 28 22 24 1.342061e-02 0.8137327 0.4473738 2.999864e-02
## 1004 22 28 20 3.622727e-02 0.7934694 0.5042321 7.184642e-02
## 1005 18 30 24 2.553191e-03 0.8090278 0.4411063 5.788154e-03
## 1006 24 24 22 7.975350e-02 0.8000000 0.5041937 1.581803e-01
## 1007 26 22 22 9.370282e-04 0.8297959 0.4058696 2.308693e-03
## 1008 26 26 18 2.371961e-02 0.8151020 0.4324179 5.485344e-02
## 1009 26 20 24 3.661616e-02 0.6955102 0.8507433 4.304020e-02
## 1010 24 26 20 5.864703e-02 0.8061224 0.4847582 1.209820e-01
## 1011 20 30 22 3.181818e-01 0.7098765 0.7332016 4.339623e-01
## 1012 22 26 22 6.976539e-02 0.8167347 0.4472519 1.559868e-01
## 1013 26 26 18 1.021432e-02 0.8024490 0.4683552 2.180892e-02
## 1014 22 22 26 1.626794e-01 0.8057143 0.4842037 3.359731e-01
## 1015 18 30 22 1.525673e-02 0.7044898 0.7809146 1.953701e-02
## 1016 30 24 16 7.189764e-02 0.7902041 0.4707515 1.527295e-01
## 1017 22 28 20 5.260943e-03 0.7787755 0.5495521 9.573146e-03
## 1018 18 26 26 3.415566e-03 0.8057143 0.4668728 7.315839e-03
## 1019 24 28 18 2.720903e-02 0.8232653 0.4111166 6.618323e-02
## 1020 24 30 20 6.378788e-02 0.8122717 0.4443345 1.435582e-01
## 1021 26 28 22 1.612176e-02 0.7396122 0.6959927 2.316369e-02
## 1022 22 26 24 1.611722e-02 0.8248457 0.4201626 3.835947e-02
## 1023 22 28 20 3.861317e-02 0.8163265 0.4347045 8.882625e-02
## 1024 22 26 22 3.929964e-02 0.8216327 0.4325520 9.085529e-02
## 1025 26 22 24 1.821635e-02 0.8198302 0.4386508 4.152814e-02
## 1026 24 28 20 1.040211e-02 0.8229167 0.4214587 2.468120e-02
## 1027 22 26 22 3.373302e-02 0.8248980 0.4219610 7.994344e-02
## 1028 20 26 26 3.796204e-02 0.8155864 0.4393421 8.640655e-02
## 1029 28 26 16 5.011655e-02 0.7902041 0.4818818 1.040018e-01
## 1030 26 26 20 1.800012e-02 0.8229167 0.4259007 4.226366e-02
## 1031 18 30 26 2.730015e-03 0.8246896 0.3993414 6.836294e-03
## 1032 18 28 24 1.390026e-02 0.8257143 0.4048306 3.433600e-02
## 1033 24 26 20 2.118332e-03 0.7591837 0.6265991 3.380681e-03
## 1034 24 26 20 2.079034e-02 0.8093878 0.4661999 4.459534e-02
## 1035 26 26 24 1.194743e-03 0.8272161 0.4167713 2.866664e-03
## 1036 28 26 22 6.731620e-04 0.8258310 0.4154881 1.620172e-03
## 1037 24 28 20 5.483631e-02 0.8047840 0.4780304 1.147130e-01
## 1038 24 28 24 4.737750e-02 0.8164820 0.4424856 1.070713e-01
## 1039 28 22 24 2.261929e-02 0.8243243 0.4227521 5.350486e-02
## 1040 28 24 26 3.463123e-02 0.8099934 0.4703009 7.363633e-02
## 1041 24 24 24 8.857809e-02 0.8175154 0.4464370 1.984112e-01
## 1042 24 28 18 1.471591e-01 0.7979592 0.4813157 3.057435e-01
## 1043 22 28 20 1.206165e-02 0.8273469 0.4048975 2.978939e-02
## 1044 20 26 24 1.252530e-02 0.8277551 0.4079047 3.070644e-02
## 1045 22 28 24 3.805984e-02 0.8221329 0.4303571 8.843782e-02
## 1046 20 28 24 1.755069e-02 0.8221451 0.4250989 4.128614e-02
## 1047 22 26 22 8.232594e-02 0.8102041 0.4632647 1.777082e-01
## 1048 20 26 24 2.656503e-02 0.8265306 0.4130548 6.431357e-02
## 1049 26 24 20 5.633256e-02 0.7702041 0.5874268 9.589715e-02
## 1050 22 28 24 3.946158e-02 0.8071585 0.4784407 8.247957e-02
## 1051 24 24 22 6.524820e-02 0.8114286 0.4620945 1.412010e-01
## 1052 24 28 24 2.784283e-03 0.7711219 0.5902773 4.716907e-03
## 1053 20 26 26 1.129808e-02 0.8101852 0.4576264 2.468843e-02
## 1054 26 28 20 7.333666e-02 0.8115413 0.4495069 1.631491e-01
## 1055 22 28 22 1.867919e-03 0.8144290 0.4444315 4.202941e-03
## 1056 28 28 22 5.159091e-02 0.8099934 0.4611312 1.118790e-01
## 1057 24 28 20 3.523894e-03 0.8067130 0.4629227 7.612273e-03
## 1058 30 22 24 1.054494e-01 0.8116343 0.4626590 2.279203e-01
## 1059 26 28 22 5.741802e-03 0.8168283 0.4423893 1.297907e-02
## 1060 28 24 22 2.907600e-02 0.8250548 0.4184771 6.948050e-02
## 1061 18 28 26 6.405424e-02 0.7997685 0.4694953 1.364321e-01
## 1062 24 24 22 1.410021e-02 0.8257143 0.4205463 3.352832e-02
## 1063 26 30 22 1.623574e-01 0.7692308 0.6234188 2.604307e-01
## 1064 26 30 16 1.689165e-01 0.7735340 0.5129561 3.293002e-01
## 1065 20 28 24 4.740260e-02 0.8148148 0.4443182 1.066862e-01
## 1066 22 30 20 1.207632e-02 0.8144290 0.4313940 2.799371e-02
## 1067 20 26 24 7.483935e-02 0.8175510 0.4415780 1.694816e-01
## 1068 20 30 20 9.831155e-02 0.8089796 0.4431551 2.218446e-01
## 1069 22 26 24 2.251113e-02 0.8040123 0.4840510 4.650569e-02
## 1070 24 28 20 9.523810e-03 0.8086420 0.4556161 2.090314e-02
## 1071 20 26 24 1.737673e-02 0.7081633 0.8159351 2.129670e-02
## 1072 28 26 18 1.221657e-01 0.8082562 0.4774896 2.558500e-01
## 1073 26 24 20 7.517911e-02 0.8195918 0.4362646 1.723246e-01
## 1074 20 26 26 6.063802e-02 0.8070988 0.4629651 1.309775e-01
## 1075 22 22 26 6.209790e-02 0.8102041 0.4684434 1.325622e-01
## 1076 22 28 22 3.353363e-02 0.7064043 0.8231752 4.073693e-02
## 1077 22 26 22 1.261753e-01 0.8036735 0.4847585 2.602848e-01
## 1078 24 26 22 4.481233e-02 0.8036265 0.4831990 9.274094e-02
## 1079 28 30 24 2.071051e-02 0.8114218 0.4572266 4.529593e-02
## 1080 24 22 24 5.358495e-02 0.8167347 0.4508806 1.188451e-01
## 1081 22 26 22 8.171681e-02 0.8183673 0.4407861 1.853888e-01
## 1082 20 26 24 2.217363e-02 0.8183673 0.4337873 5.111637e-02
## 1083 28 24 20 1.023548e-01 0.7202932 0.7812380 1.310161e-01
## 1084 24 26 24 2.913367e-02 0.8268809 0.4167941 6.989944e-02
## 1085 24 26 24 1.308918e-02 0.8298028 0.4092435 3.198384e-02
## 1086 24 30 22 3.115724e-03 0.8265235 0.4073822 7.648160e-03
## 1087 20 30 26 9.161381e-03 0.8244460 0.4094918 2.237256e-02
## 1088 20 30 20 1.615338e-02 0.8081633 0.4514310 3.578262e-02
## 1089 24 24 24 4.954368e-02 0.7604167 0.6301370 7.862366e-02
## 1090 20 28 22 3.534091e-02 0.8212245 0.4246566 8.322232e-02
## 1091 26 28 18 5.351791e-03 0.8186728 0.4225228 1.266628e-02
## 1092 22 26 22 4.270548e-02 0.8106122 0.4678484 9.128061e-02
## 1093 24 28 24 2.007326e-02 0.8130194 0.4574511 4.388067e-02
## 1094 26 26 22 1.450021e-02 0.7136596 0.7942252 1.825705e-02
## 1095 22 26 22 2.664003e-03 0.8253061 0.4199470 6.343664e-03
## 1096 24 22 24 2.033730e-02 0.8228571 0.4285301 4.745828e-02
## 1097 22 26 22 2.159657e-02 0.8240816 0.4238129 5.095779e-02
## 1098 28 24 22 3.946158e-02 0.8071585 0.4784407 8.247957e-02
## 1099 26 28 20 1.497907e-02 0.8239591 0.4131790 3.625322e-02
## 1100 28 26 16 5.243141e-02 0.7848980 0.4929547 1.063615e-01
## 1101 24 22 26 4.540965e-02 0.7511574 0.6563083 6.918952e-02
## 1102 26 24 20 1.795502e-03 0.8306122 0.4010773 4.476698e-03
## 1103 24 26 20 1.940579e-02 0.7808163 0.5494290 3.531993e-02
## 1104 24 28 18 1.714853e-02 0.8179592 0.4232369 4.051756e-02
## 1105 22 30 18 9.565350e-03 0.7991837 0.4658330 2.053386e-02
## 1106 24 22 24 2.576905e-02 0.8065306 0.4793584 5.375739e-02
## 1107 22 26 22 8.734123e-02 0.7955102 0.5181499 1.685636e-01
## 1108 22 26 24 6.295072e-02 0.7299383 0.7464222 8.433662e-02
## 1109 26 28 18 3.988668e-02 0.8179012 0.4203089 9.489847e-02
## 1110 24 28 18 4.916667e-02 0.7918367 0.5098797 9.642797e-02
## 1111 22 28 20 1.111894e-02 0.8191837 0.4279567 2.598146e-02
## 1112 20 28 24 2.579906e-02 0.8198302 0.4283160 6.023371e-02
## 1113 24 26 22 5.403687e-02 0.7145062 0.7977314 6.773818e-02
## 1114 22 28 24 7.588197e-04 0.8235939 0.4217252 1.799323e-03
## 1115 24 26 20 5.611722e-02 0.8216327 0.4256054 1.318527e-01
## 1116 22 28 20 1.932591e-04 0.8228571 0.4167794 4.636964e-04
## 1117 22 26 22 1.354511e-01 0.7987755 0.4871021 2.780754e-01
## 1118 24 28 20 1.047987e-02 0.8283179 0.4031539 2.599471e-02
## 1119 26 24 20 2.597259e-02 0.7575510 0.6347397 4.091849e-02
## 1120 22 24 24 2.203283e-02 0.7461224 0.6790042 3.244874e-02
## 1121 22 28 20 3.166278e-02 0.7828571 0.5274434 6.003068e-02
## 1122 22 24 26 6.509540e-02 0.8121142 0.4603757 1.413962e-01
## 1123 24 26 22 3.698225e-02 0.8132716 0.4536199 8.152695e-02
## 1124 20 26 24 4.694631e-02 0.7832653 0.5396140 8.699981e-02
## 1125 24 24 24 1.170569e-02 0.8186728 0.4429783 2.642496e-02
## 1126 20 30 20 2.000000e-02 0.8110204 0.4451434 4.492934e-02
## 1127 20 30 20 1.754386e-02 0.8228571 0.4074074 4.306220e-02
## 1128 28 30 18 3.137973e-03 0.8074792 0.4442879 7.062927e-03
## 1129 28 30 14 3.220779e-03 0.7893519 0.4640972 6.939881e-03
## 1130 24 28 18 1.347094e-02 0.7746939 0.5509162 2.445188e-02
## 1131 24 26 20 3.410082e-02 0.7995918 0.4926441 6.921999e-02
## 1132 24 26 20 5.320077e-03 0.8044898 0.4807074 1.106718e-02
## 1133 24 26 20 2.318551e-02 0.8020408 0.4835062 4.795286e-02
## 1134 24 30 16 8.157568e-02 0.8044898 0.4366438 1.868243e-01
## 1135 22 28 20 2.556818e-02 0.7689796 0.5945040 4.300759e-02
## 1136 26 26 26 4.166667e-03 0.8238001 0.4277733 9.740361e-03
## 1137 24 28 24 6.516291e-02 0.8213296 0.4309002 1.512251e-01
## 1138 24 28 22 1.781697e-02 0.8217677 0.4237860 4.204238e-02
## 1139 20 24 26 1.411258e-01 0.7036735 0.8086962 1.745103e-01
## 1140 24 26 26 1.603865e-02 0.8625346 0.3186137 5.033885e-02
## 1141 22 28 24 1.276700e-01 0.8002191 0.4804241 2.657443e-01
## 1142 24 24 24 2.258065e-02 0.7445988 0.6860104 3.291590e-02
## 1143 26 28 18 5.339105e-02 0.7052469 0.7949359 6.716397e-02
## 1144 26 26 26 1.315789e-03 0.8330046 0.4009471 3.281703e-03
## 1145 20 28 24 1.880798e-02 0.8202160 0.4314071 4.359682e-02
## 1146 20 26 24 1.162239e-02 0.8208163 0.4293852 2.706751e-02
## 1147 18 26 26 1.825688e-02 0.7971429 0.4827375 3.781947e-02
## 1148 22 24 24 6.265993e-02 0.8110204 0.4692966 1.335188e-01
## 1149 24 24 22 6.024531e-02 0.8163265 0.4474242 1.346492e-01
## 1150 24 24 22 8.766628e-02 0.7326531 0.7209631 1.215961e-01
## 1151 24 28 20 7.860336e-02 0.7426698 0.6788275 1.157928e-01
## 1152 24 24 24 4.405980e-02 0.8229167 0.4303797 1.023742e-01
## 1153 22 26 24 6.270032e-02 0.8040123 0.4818766 1.301170e-01
## 1154 24 24 22 2.733586e-02 0.8253061 0.4227513 6.466180e-02
## 1155 18 28 24 1.839860e-02 0.8053061 0.4621839 3.980797e-02
## 1156 28 24 20 2.322188e-02 0.8128858 0.4552851 5.100515e-02
## 1157 26 26 18 9.034803e-03 0.8248980 0.4071861 2.218839e-02
## 1158 24 28 20 4.009324e-02 0.8236883 0.4213583 9.515237e-02
## 1159 20 30 22 1.096325e-01 0.7920525 0.4904131 2.235513e-01
## 1160 24 26 22 1.730656e-02 0.8209877 0.4310722 4.014770e-02
## 1161 28 20 24 4.419467e-02 0.8198302 0.4283160 1.031824e-01
## 1162 28 24 22 1.286832e-03 0.7483565 0.6622215 1.943206e-03
## 1163 24 24 22 2.576905e-02 0.8065306 0.4793584 5.375739e-02
## 1164 22 26 22 2.751426e-02 0.8183673 0.4368798 6.297901e-02
## 1165 20 30 20 0.000000e+00 0.7987755 0.4741952 0.000000e+00
## 1166 22 30 18 2.473717e-03 0.7971429 0.4744216 5.214174e-03
## 1167 26 30 20 9.609467e-02 0.7950139 0.4882069 1.968319e-01
## 1168 22 28 20 3.051825e-02 0.8032653 0.4797903 6.360748e-02
## 1169 22 24 26 1.200035e-02 0.8198302 0.4350967 2.758087e-02
## 1170 24 28 20 4.298942e-03 0.8294753 0.3998007 1.075271e-02
## 1171 24 24 22 1.437848e-02 0.8044898 0.4854366 2.961969e-02
## 1172 20 26 24 2.014652e-02 0.8028571 0.4874076 4.133403e-02
## 1173 24 30 18 2.278245e-02 0.7951389 0.4921883 4.628807e-02
## 1174 26 28 18 1.604379e-02 0.8244599 0.4074162 3.937935e-02
## 1175 20 26 24 1.036686e-01 0.6991837 0.8299430 1.249106e-01
## 1176 26 26 22 1.951842e-02 0.8053324 0.4784105 4.079848e-02
## 1177 28 26 22 3.391480e-02 0.8258310 0.4154881 8.162642e-02
## 1178 24 26 26 9.019608e-03 0.8119806 0.4611940 1.955708e-02
## 1179 22 24 24 8.869464e-02 0.7048980 0.8285036 1.070540e-01
## 1180 20 30 24 6.105006e-03 0.8272462 0.4010302 1.522331e-02
## 1181 24 22 24 3.211032e-02 0.8277551 0.4158299 7.721984e-02
## 1182 22 24 26 1.957502e-02 0.8290895 0.4091902 4.783844e-02
## 1183 20 24 26 7.218216e-02 0.7951020 0.4970351 1.452255e-01
## 1184 24 28 20 1.146218e-01 0.7727623 0.5867057 1.953652e-01
## 1185 22 26 22 6.581654e-03 0.8310204 0.4027780 1.634065e-02
## 1186 24 30 20 7.317073e-03 0.8250548 0.4054449 1.804702e-02
## 1187 22 28 20 1.545229e-02 0.8257143 0.4116074 3.754133e-02
## 1188 20 26 24 5.364774e-02 0.8146939 0.4424297 1.212571e-01
## 1189 28 24 18 2.775385e-03 0.8183673 0.4225547 6.568108e-03
## 1190 26 26 22 9.390609e-03 0.7677137 0.6041333 1.554394e-02
## 1191 18 30 24 3.054545e-02 0.7939815 0.4818270 6.339506e-02
## 1192 24 28 22 1.424549e-02 0.8067933 0.4765550 2.989264e-02
## 1193 24 26 26 7.779789e-02 0.8015928 0.4920917 1.580963e-01
## 1194 26 22 24 4.346095e-02 0.8190586 0.4381516 9.919158e-02
## 1195 30 26 18 2.047800e-02 0.7852447 0.5079610 4.031411e-02
## 1196 24 28 22 2.643371e-02 0.8162893 0.4472234 5.910626e-02
## 1197 28 22 20 1.198123e-02 0.8097959 0.4502154 2.661221e-02
## 1198 22 26 22 3.559435e-02 0.8216327 0.4303635 8.270764e-02
## 1199 28 28 20 7.170868e-04 0.8092105 0.4548200 1.576639e-03
## 1200 24 28 20 1.701727e-02 0.7218364 0.7609529 2.236310e-02
## 1201 22 28 20 4.848485e-02 0.8085714 0.4596393 1.054846e-01
## 1202 22 24 24 9.688181e-02 0.8163265 0.4472917 2.165965e-01
## 1203 18 28 24 3.116531e-02 0.8175510 0.4248904 7.334905e-02
## 1204 22 28 20 1.067493e-01 0.7934694 0.5147774 2.073698e-01
## 1205 24 28 18 2.803076e-02 0.7277551 0.7007229 4.000264e-02
## 1206 22 28 22 9.240107e-03 0.8595679 0.3187414 2.898935e-02
## 1207 20 30 20 4.722222e-02 0.7338776 0.6820541 6.923530e-02
## 1208 26 26 20 3.912088e-02 0.8209877 0.4310584 9.075540e-02
## 1209 28 20 22 1.503030e-02 0.8151020 0.4451222 3.376669e-02
## 1210 26 28 16 4.281851e-03 0.7061224 0.7789851 5.496705e-03
## 1211 28 24 18 5.608394e-02 0.8016327 0.4694077 1.194781e-01
## 1212 22 26 22 5.318366e-02 0.8212245 0.4277691 1.243280e-01
## 1213 22 30 24 3.600713e-03 0.8099030 0.4568580 7.881471e-03
## 1214 24 26 20 6.717949e-03 0.8159184 0.4409993 1.523347e-02
## 1215 26 24 20 1.612941e-03 0.8118367 0.4573874 3.526423e-03
## 1216 18 30 24 2.508361e-03 0.8117284 0.4329848 5.793185e-03
## 1217 18 28 24 6.985328e-03 0.8224490 0.4140474 1.687084e-02
## 1218 20 28 22 5.685791e-02 0.8114286 0.4572663 1.243431e-01
## 1219 20 24 26 1.860256e-01 0.8016327 0.5026633 3.700800e-01
## 1220 22 28 20 1.113173e-01 0.8065306 0.4711078 2.362883e-01
## 1221 26 24 22 7.770008e-03 0.8213735 0.4337438 1.791382e-02
## 1222 18 30 26 1.482152e-02 0.8232286 0.4055711 3.654481e-02
## 1223 24 28 22 1.898379e-02 0.8265157 0.4134711 4.591322e-02
## 1224 22 28 22 2.015308e-02 0.7993827 0.4840671 4.163283e-02
## 1225 20 26 24 3.704478e-02 0.8114286 0.4652402 7.962507e-02
## 1226 22 28 20 9.787800e-04 0.8208163 0.4232404 2.312587e-03
## 1227 26 26 18 7.422131e-02 0.8069388 0.4563333 1.626471e-01
## 1228 28 28 22 1.783578e-02 0.8284024 0.4075835 4.375983e-02
## 1229 26 28 20 1.393991e-02 0.8005844 0.4853774 2.871973e-02
## 1230 20 28 22 5.681818e-03 0.7795918 0.5502142 1.032656e-02
## 1231 22 30 20 1.179884e-02 0.7577160 0.6216256 1.898062e-02
## 1232 16 28 26 6.250000e-02 0.8048980 0.4409229 1.417481e-01
## 1233 26 30 22 1.384541e-01 0.8080210 0.4756417 2.910890e-01
## 1234 28 26 24 5.615681e-02 0.8201841 0.4382336 1.281435e-01
## 1235 24 26 22 4.662005e-03 0.8317901 0.4016892 1.160600e-02
## 1236 22 28 22 1.533872e-01 0.8074846 0.4761760 3.221228e-01
## 1237 20 26 24 4.831116e-02 0.8061224 0.4791009 1.008371e-01
## 1238 20 28 24 3.027719e-02 0.7064043 0.8225794 3.680762e-02
## 1239 26 24 20 7.649836e-02 0.7473469 0.6726638 1.137245e-01
## 1240 24 22 26 3.528387e-03 0.7916667 0.5207030 6.776198e-03
## 1241 22 26 22 3.096903e-02 0.8212245 0.4336081 7.142170e-02
## 1242 22 28 22 2.355237e-02 0.8244599 0.4192490 5.617753e-02
## 1243 22 28 22 2.355237e-02 0.8244599 0.4192490 5.617753e-02
## 1244 24 24 26 1.177642e-01 0.8086194 0.4740057 2.484446e-01
## 1245 24 26 20 6.510417e-03 0.8293878 0.4054708 1.605644e-02
## 1246 20 28 22 2.345614e-02 0.7963265 0.4849494 4.836821e-02
## 1247 20 28 24 1.878122e-02 0.8260031 0.4101688 4.578900e-02
## 1248 24 20 26 1.802851e-02 0.8232653 0.4211383 4.280900e-02
## 1249 28 20 24 3.523894e-03 0.8067130 0.4629227 7.612273e-03
## 1250 22 30 24 9.250733e-02 0.7621191 0.5864538 1.577402e-01
## 1251 20 28 24 4.406308e-04 0.8217593 0.4218511 1.044517e-03
## 1252 28 26 22 6.097598e-02 0.8130194 0.4481034 1.360757e-01
## 1253 26 30 20 2.323033e-03 0.7538089 0.6246682 3.718827e-03
## 1254 24 26 26 1.639217e-01 0.7856648 0.5508244 2.975933e-01
## 1255 24 26 22 1.003307e-02 0.7700617 0.5972680 1.679827e-02
## 1256 26 28 20 8.476000e-03 0.8162893 0.4370273 1.939467e-02
## 1257 22 30 20 4.297521e-03 0.7797068 0.5393460 7.968022e-03
## 1258 22 28 26 1.272877e-02 0.8147507 0.4448959 2.861066e-02
## 1259 22 28 22 4.929853e-02 0.8109568 0.4590680 1.073883e-01
## 1260 26 26 18 1.018100e-02 0.8269388 0.4020047 2.532556e-02
## 1261 26 26 18 5.448808e-03 0.8232653 0.4137227 1.317019e-02
## 1262 26 26 18 8.361823e-02 0.7355102 0.6948784 1.203351e-01
## 1263 26 26 18 4.466501e-02 0.8200000 0.4250871 1.050726e-01
## 1264 26 26 18 8.140008e-04 0.8020408 0.4767621 1.707352e-03
## 1265 22 28 22 3.631063e-02 0.8059414 0.4800967 7.563190e-02
## 1266 20 26 26 3.772080e-02 0.8152006 0.4466781 8.444739e-02
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(snps.annot <- bed_intersect(x=genes, y=snps.map %>% select(chrom, start, end), suffix = c(".gene", ".snp")) %>%
left_join(P.plat.bestblast, by = c("geneID.gene"="id_gtf"))) #annotate genes containing SNPs
## # A tibble: 286 x 21
## chrom start.gene end.gene geneID.gene start.snp end.snp .source .overlap
## <chr> <dbl> <dbl> <chr> <dbl> <dbl> <chr> <int>
## 1 HiC_scaff~ 2910342 2972113 evm.TU.HiC~ 2970225 2.97e6 1 2
## 2 HiC_scaff~ 3781588 3889899 evm.TU.HiC~ 3795099 3.80e6 1 2
## 3 HiC_scaff~ 3842675 3867362 evm.TU.HiC~ 3864354 3.86e6 1 2
## 4 HiC_scaff~ 5812471 5861708 evm.TU.HiC~ 5843372 5.84e6 1 2
## 5 HiC_scaff~ 841688 869093 evm.TU.HiC~ 854946 8.55e5 1 2
## 6 HiC_scaff~ 13897140 13930596 evm.TU.HiC~ 13897148 1.39e7 1 2
## 7 HiC_scaff~ 17412158 17447290 evm.TU.HiC~ 17442642 1.74e7 1 2
## 8 HiC_scaff~ 11410480 11536332 evm.TU.HiC~ 11446041 1.14e7 1 2
## 9 HiC_scaff~ 15897444 15934626 evm.TU.HiC~ 15918693 1.59e7 1 2
## 10 HiC_scaff~ 596621 661895 evm.TU.HiC~ 601714 6.02e5 1 2
## # ... with 276 more rows, and 13 more variables: id <chr>, blast_type <fct>,
## # seq_length <dbl>, hit_acc <chr>, hit_desc <chr>, score <dbl>,
## # e_value <dbl>, percent_ident <chr>, percent_ident.num <dbl>,
## # query_start <dbl>, query_end <dbl>, hit_start <dbl>, hit_end <dbl>
snps.annot %>%
filter(geneID.gene %in%
unique(c(rownames(diffex.AM), rownames(diffex.AL), rownames(diffex.ML)))) # 94 SNPs located in DEGs
## # A tibble: 35 x 21
## chrom start.gene end.gene geneID.gene start.snp end.snp .source .overlap
## <chr> <dbl> <dbl> <chr> <dbl> <dbl> <chr> <int>
## 1 HiC_scaff~ 11410480 11536332 evm.TU.HiC~ 11446041 1.14e7 1 2
## 2 HiC_scaff~ 7490954 7549189 evm.TU.HiC~ 7515163 7.52e6 1 2
## 3 HiC_scaff~ 34790135 34840089 evm.TU.HiC~ 34827831 3.48e7 1 2
## 4 HiC_scaff~ 22642452 22668074 evm.TU.HiC~ 22644666 2.26e7 1 2
## 5 HiC_scaff~ 22642452 22668074 evm.TU.HiC~ 22644672 2.26e7 1 2
## 6 HiC_scaff~ 22642452 22668074 evm.TU.HiC~ 22666887 2.27e7 1 2
## 7 HiC_scaff~ 31986222 32044200 evm.TU.HiC~ 32042609 3.20e7 1 2
## 8 HiC_scaff~ 32525044 32530652 evm.TU.HiC~ 32528767 3.25e7 1 2
## 9 HiC_scaff~ 7517435 7563575 evm.TU.HiC~ 7539468 7.54e6 1 2
## 10 HiC_scaff~ 24982613 25000151 evm.TU.HiC~ 24993985 2.50e7 1 2
## # ... with 25 more rows, and 13 more variables: id <chr>, blast_type <fct>,
## # seq_length <dbl>, hit_acc <chr>, hit_desc <chr>, score <dbl>,
## # e_value <dbl>, percent_ident <chr>, percent_ident.num <dbl>,
## # query_start <dbl>, query_end <dbl>, hit_start <dbl>, hit_end <dbl>
load("../results/wgcna/geneInfo")
load(file="../results/wgcna/modules")
load(file="../results/wgcna/modules.p")
load(file="../results/wgcna/modules.cor")
snps.annot %>%
left_join(geneInfo %>% select(id, moduleColor, GS.pH, p.GS.pH, match(modules.cor,names(geneInfo)), match(modules.p,names(geneInfo))), by=c("geneID.gene"="id")) %>%
filter(p.GS.pH < 0.05)
## # A tibble: 66 x 38
## chrom start.gene end.gene geneID.gene start.snp end.snp .source .overlap
## <chr> <dbl> <dbl> <chr> <dbl> <dbl> <chr> <int>
## 1 HiC_scaff~ 11410480 11536332 evm.TU.HiC~ 11446041 1.14e7 1 2
## 2 HiC_scaff~ 15897444 15934626 evm.TU.HiC~ 15918693 1.59e7 1 2
## 3 HiC_scaff~ 27118276 27144079 evm.TU.HiC~ 27118494 2.71e7 1 2
## 4 HiC_scaff~ 42153803 42166880 evm.TU.HiC~ 42161111 4.22e7 1 2
## 5 HiC_scaff~ 42153803 42166880 evm.TU.HiC~ 42164925 4.22e7 1 2
## 6 HiC_scaff~ 42153803 42166880 evm.TU.HiC~ 42164945 4.22e7 1 2
## 7 HiC_scaff~ 34790135 34840089 evm.TU.HiC~ 34827831 3.48e7 1 2
## 8 HiC_scaff~ 22787616 22804029 evm.TU.HiC~ 22801071 2.28e7 1 2
## 9 HiC_scaff~ 9711014 9802119 evm.TU.HiC~ 9778840 9.78e6 1 2
## 10 HiC_scaff~ 20646873 20662570 evm.TU.HiC~ 20651021 2.07e7 1 2
## # ... with 56 more rows, and 30 more variables: id <chr>, blast_type <fct>,
## # seq_length <dbl>, hit_acc <chr>, hit_desc <chr>, score <dbl>,
## # e_value <dbl>, percent_ident <chr>, percent_ident.num <dbl>,
## # query_start <dbl>, query_end <dbl>, hit_start <dbl>, hit_end <dbl>,
## # moduleColor <chr>, GS.pH <dbl>, p.GS.pH <dbl>, MM.brown <dbl>,
## # MM.pink <dbl>, MM.lightcyan1 <dbl>, MM.red <dbl>, MM.cyan <dbl>,
## # MM.green <dbl>, MM.darkgreen <dbl>, p.MM.brown <dbl>, p.MM.pink <dbl>, ...
snps.annot %>%
left_join(geneInfo %>% select(id, moduleColor, GS.pH, p.GS.pH, match(modules.cor,names(geneInfo)), match(modules.p,names(geneInfo))), by=c("geneID.gene"="id")) %>%
filter(moduleColor %in% modules)
## # A tibble: 133 x 38
## chrom start.gene end.gene geneID.gene start.snp end.snp .source .overlap
## <chr> <dbl> <dbl> <chr> <dbl> <dbl> <chr> <int>
## 1 HiC_scaff~ 841688 869093 evm.TU.HiC~ 854946 8.55e5 1 2
## 2 HiC_scaff~ 13897140 13930596 evm.TU.HiC~ 13897148 1.39e7 1 2
## 3 HiC_scaff~ 17412158 17447290 evm.TU.HiC~ 17442642 1.74e7 1 2
## 4 HiC_scaff~ 11410480 11536332 evm.TU.HiC~ 11446041 1.14e7 1 2
## 5 HiC_scaff~ 15897444 15934626 evm.TU.HiC~ 15918693 1.59e7 1 2
## 6 HiC_scaff~ 35904000 35907532 evm.TU.HiC~ 35904026 3.59e7 1 2
## 7 HiC_scaff~ 40683473 40703711 evm.TU.HiC~ 40687859 4.07e7 1 2
## 8 HiC_scaff~ 27042480 27052463 evm.TU.HiC~ 27050414 2.71e7 1 2
## 9 HiC_scaff~ 42153803 42166880 evm.TU.HiC~ 42161111 4.22e7 1 2
## 10 HiC_scaff~ 42153803 42166880 evm.TU.HiC~ 42164925 4.22e7 1 2
## # ... with 123 more rows, and 30 more variables: id <chr>, blast_type <fct>,
## # seq_length <dbl>, hit_acc <chr>, hit_desc <chr>, score <dbl>,
## # e_value <dbl>, percent_ident <chr>, percent_ident.num <dbl>,
## # query_start <dbl>, query_end <dbl>, hit_start <dbl>, hit_end <dbl>,
## # moduleColor <chr>, GS.pH <dbl>, p.GS.pH <dbl>, MM.brown <dbl>,
## # MM.pink <dbl>, MM.lightcyan1 <dbl>, MM.red <dbl>, MM.cyan <dbl>,
## # MM.green <dbl>, MM.darkgreen <dbl>, p.MM.brown <dbl>, p.MM.pink <dbl>, ...
I will use Colony to identify siblings in my samples. The Colony software is only available via the command line for Mac users (it’s typically used via GUI on Windows). To get the most current version of the program I actually had to email the developer. He send me a link to download it. I’m running Colony Version 2.0.6.6 (June 30, 2020), which is saved on my computer and in this project’s repo (references/colony2.mac.20200904).
Prepare files for Colony sibship analysis Colony identifies siblings, which I would like to do with my juveniles. Here I prepare files for Colony.
Mac suggested that I only keep SNPs with very high minor allele frequencies. Here I use SNPRelate to export SNPs with MAF >=20%, and keeping the missing rate <= 20%.
snpset.4Colony <- snpgdsLDpruning(genofile, maf=.20, missing.rate=.20, autosome.only=FALSE)
## SNP pruning based on LD:
## Excluding 918,315 SNPs (monomorphic: TRUE, MAF: 0.2, missing rate: 0.2)
## # of samples: 43
## # of SNPs: 1,190
## using 1 thread
## sliding window: 500,000 basepairs, Inf SNPs
## |LD| threshold: 0.2
## method: composite
## Chromosome HiC_scaffold_1: 0.09%, 3/3,379
## Chromosome HiC_scaffold_10: 0.11%, 6/5,432
## Chromosome HiC_scaffold_100: 0.11%, 11/9,741
## Chromosome HiC_scaffold_101: 0.05%, 3/6,016
## Chromosome HiC_scaffold_102: 0.12%, 12/10,263
## Chromosome HiC_scaffold_1027: 2.63%, 1/38
## Chromosome HiC_scaffold_103: 0.09%, 13/14,948
## Chromosome HiC_scaffold_104: 0.10%, 11/11,362
## Chromosome HiC_scaffold_11: 0.10%, 7/7,301
## Chromosome HiC_scaffold_12: 0.10%, 9/9,355
## Chromosome HiC_scaffold_13: 0.07%, 6/8,325
## Chromosome HiC_scaffold_14: 0.04%, 2/4,824
## Chromosome HiC_scaffold_15: 0.14%, 23/16,693
## Chromosome HiC_scaffold_16: 0.05%, 6/11,696
## Chromosome HiC_scaffold_17: 0.09%, 9/10,389
## Chromosome HiC_scaffold_18: 0.13%, 13/9,821
## Chromosome HiC_scaffold_19: 0.11%, 17/16,126
## Chromosome HiC_scaffold_2: 0.12%, 11/9,174
## Chromosome HiC_scaffold_20: 0.11%, 7/6,534
## Chromosome HiC_scaffold_21: 0.10%, 16/15,780
## Chromosome HiC_scaffold_22: 0.22%, 14/6,506
## Chromosome HiC_scaffold_23: 0.12%, 9/7,757
## Chromosome HiC_scaffold_24: 0.04%, 4/9,753
## Chromosome HiC_scaffold_25: 0.14%, 7/4,934
## Chromosome HiC_scaffold_26: 0.10%, 16/15,336
## Chromosome HiC_scaffold_27: 0.11%, 10/9,390
## Chromosome HiC_scaffold_28: 0.11%, 12/11,269
## Chromosome HiC_scaffold_29: 0.15%, 14/9,528
## Chromosome HiC_scaffold_3: 0.16%, 11/6,962
## Chromosome HiC_scaffold_30: 0.07%, 5/6,965
## Chromosome HiC_scaffold_31: 0.13%, 6/4,514
## Chromosome HiC_scaffold_32: 0.11%, 5/4,498
## Chromosome HiC_scaffold_33: 0.16%, 6/3,838
## Chromosome HiC_scaffold_34: 0.07%, 3/4,031
## Chromosome HiC_scaffold_35: 0.20%, 11/5,561
## Chromosome HiC_scaffold_36: 0.26%, 8/3,023
## Chromosome HiC_scaffold_37: 0.16%, 8/4,853
## Chromosome HiC_scaffold_38: 0.25%, 13/5,302
## Chromosome HiC_scaffold_39: 0.20%, 7/3,450
## Chromosome HiC_scaffold_4: 0.07%, 5/7,531
## Chromosome HiC_scaffold_40: 0.35%, 10/2,850
## Chromosome HiC_scaffold_41: 0.14%, 8/5,877
## Chromosome HiC_scaffold_42: 0.17%, 10/6,018
## Chromosome HiC_scaffold_43: 0.12%, 13/10,950
## Chromosome HiC_scaffold_44: 0.06%, 2/3,310
## Chromosome HiC_scaffold_45: 0.08%, 8/9,509
## Chromosome HiC_scaffold_46: 0.04%, 7/18,080
## Chromosome HiC_scaffold_47: 0.07%, 3/4,165
## Chromosome HiC_scaffold_48: 0.10%, 10/9,596
## Chromosome HiC_scaffold_49: 0.13%, 11/8,545
## Chromosome HiC_scaffold_5: 0.14%, 8/5,859
## Chromosome HiC_scaffold_50: 0.07%, 10/13,554
## Chromosome HiC_scaffold_51: 0.13%, 13/10,072
## Chromosome HiC_scaffold_52: 0.29%, 27/9,298
## Chromosome HiC_scaffold_53: 0.07%, 5/6,831
## Chromosome HiC_scaffold_54: 0.15%, 12/7,956
## Chromosome HiC_scaffold_55: 0.22%, 10/4,530
## Chromosome HiC_scaffold_56: 0.04%, 9/20,020
## Chromosome HiC_scaffold_57: 0.08%, 11/14,193
## Chromosome HiC_scaffold_58: 0.13%, 11/8,410
## Chromosome HiC_scaffold_59: 0.15%, 8/5,467
## Chromosome HiC_scaffold_6: 0.18%, 9/5,074
## Chromosome HiC_scaffold_60: 0.08%, 13/16,819
## Chromosome HiC_scaffold_61: 0.06%, 3/4,820
## Chromosome HiC_scaffold_62: 0.07%, 6/8,053
## Chromosome HiC_scaffold_63: 0.09%, 3/3,179
## Chromosome HiC_scaffold_64: 0.15%, 7/4,621
## Chromosome HiC_scaffold_65: 0.08%, 8/10,152
## Chromosome HiC_scaffold_66: 0.11%, 12/11,257
## Chromosome HiC_scaffold_67: 0.08%, 8/9,945
## Chromosome HiC_scaffold_68: 0.05%, 5/10,100
## Chromosome HiC_scaffold_69: 0.06%, 11/17,745
## Chromosome HiC_scaffold_6951: 0.23%, 6/2,622
## Chromosome HiC_scaffold_6958: 0.27%, 1/373
## Chromosome HiC_scaffold_7: 0.13%, 6/4,741
## Chromosome HiC_scaffold_70: 0.04%, 2/4,661
## Chromosome HiC_scaffold_71: 0.17%, 7/4,081
## Chromosome HiC_scaffold_72: 0.12%, 11/9,556
## Chromosome HiC_scaffold_73: 0.15%, 5/3,441
## Chromosome HiC_scaffold_74: 0.12%, 14/11,377
## Chromosome HiC_scaffold_75: 0.15%, 2/1,367
## Chromosome HiC_scaffold_76: 0.08%, 10/11,983
## Chromosome HiC_scaffold_77: 0.11%, 8/7,438
## Chromosome HiC_scaffold_78: 0.08%, 11/14,230
## Chromosome HiC_scaffold_79: 0.12%, 28/23,329
## Chromosome HiC_scaffold_8: 0.17%, 11/6,507
## Chromosome HiC_scaffold_80: 0.11%, 13/11,310
## Chromosome HiC_scaffold_81: 0.09%, 17/19,617
## Chromosome HiC_scaffold_82: 0.08%, 9/11,275
## Chromosome HiC_scaffold_83: 0.09%, 4/4,480
## Chromosome HiC_scaffold_84: 0.08%, 14/17,064
## Chromosome HiC_scaffold_85: 0.09%, 10/10,944
## Chromosome HiC_scaffold_86: 0.14%, 12/8,564
## Chromosome HiC_scaffold_87: 0.14%, 6/4,283
## Chromosome HiC_scaffold_88: 0.12%, 8/6,616
## Chromosome HiC_scaffold_89: 0.09%, 9/10,388
## Chromosome HiC_scaffold_9: 0.13%, 10/7,962
## Chromosome HiC_scaffold_90: 0.12%, 14/11,817
## Chromosome HiC_scaffold_91: 0.11%, 5/4,639
## Chromosome HiC_scaffold_92: 0.05%, 9/17,016
## Chromosome HiC_scaffold_93: 0.22%, 9/4,019
## Chromosome HiC_scaffold_94: 0.06%, 9/14,019
## Chromosome HiC_scaffold_946: 0.27%, 1/372
## Chromosome HiC_scaffold_95: 0.10%, 8/8,341
## Chromosome HiC_scaffold_96: 0.10%, 7/6,741
## Chromosome HiC_scaffold_97: 0.11%, 8/7,479
## Chromosome HiC_scaffold_98: 0.18%, 8/4,454
## Chromosome HiC_scaffold_99: 0.09%, 6/6,788
## 969 markers are selected in total.
snpset.id.4Colony <- unlist(unname(snpset.4Colony))
snpgdsCreateGenoSet(src.fn="../results/genotype/genotypes.gds",
dest.fn="../results/genotype/colony/genotypes-4Colony.gds",
snp.id=snpset.id.4Colony)
## Create a GDS genotype file:
## The new dataset consists of 43 samples and 969 SNPs
## write sample.id
## write snp.id
## write snp.rs.id
## write snp.position
## write snp.chromosome
## write snp.allele
## SNP genotypes are stored in SNP-major mode (Sample X SNP).
SNPRelate codes alleles this way: “There are four possible values stored in the variable genotype: 0, 1, 2 and 3. For bi-allelic SNP sites, “0” indicates two B alleles, “1” indicates one A allele and one B allele, “2” indicates two A alleles, and “3” is a missing genotype. (When you) take out genotype data with sample and SNP IDs, and four possible values are returned 0, 1, 2 and NA (3 is replaced by NA).
Colony codes alleles this way: “The first column gives the individual ID (a string containing a maximum of 20 letters and/or numbers, no other characters are allowed), the 2nd and 3rd columns give the alleles observed for the individual at the first locus, the 4th and 5th give the alleles observed for the individual at the 2nd locus … An allele is identified by an integer, in the range of 1~999999999. If the locus is a dominant marker, then only one (instead of 2) column is required for the marker, and the value for the genotype should be either 1 (dominant phenotype, presence of a band) or 2 (recessive phenotype, absence of a band). Missing genotypes are indicated by 0 0 for a codominant marker and 0 for a dominant marker.” Also, there cannot be any NA values in the Colony genotype data.
I wanted to use the R program radiator to create a Colony formatted genotype file. But after a TON of attempts I wasn’t able to get my SNPRelate .gds data into radiator directly nor could I successfully import a .vcf file.
So, here I manually re-code the genotype matrix.
# Extract genotype matrix
geno.matrix4Colony <- snpgdsGetGeno(gdsobj="../results/genotype/colony/genotypes-4Colony.gds", with.id=TRUE)
## Genotype matrix: 43 samples X 969 SNPs
paste("No. of SNPs for Colony sibship analysis: ", ncol(geno.matrix4Colony$genotype), sep="")
## [1] "No. of SNPs for Colony sibship analysis: 969"
paste("No. of samples for Colony sibship analysis: ", nrow(geno.matrix4Colony$genotype), sep="")
## [1] "No. of samples for Colony sibship analysis: 43"
# Replace SNPRelate numeric allele coding with character allele coding
a <- geno.matrix4Colony$genotype %>% as_data_frame() %>%
mutate_all(funs(str_replace(., "0", "BB"))) %>%
mutate_all(funs(str_replace(., "1", "AB"))) %>%
mutate_all(funs(str_replace(., "2", "AA")))
## Warning: `as_data_frame()` was deprecated in tibble 2.0.0.
## Please use `as_tibble()` instead.
## The signature and semantics have changed, see `?as_tibble`.
## This warning is displayed once every 8 hours.
## Call `lifecycle::last_lifecycle_warnings()` to see where this warning was generated.
## Warning: The `x` argument of `as_tibble.matrix()` must have unique column names if `.name_repair` is omitted as of tibble 2.0.0.
## Using compatibility `.name_repair`.
## This warning is displayed once every 8 hours.
## Call `lifecycle::last_lifecycle_warnings()` to see where this warning was generated.
## Warning: `funs()` was deprecated in dplyr 0.8.0.
## Please use a list of either functions or lambdas:
##
## # Simple named list:
## list(mean = mean, median = median)
##
## # Auto named with `tibble::lst()`:
## tibble::lst(mean, median)
##
## # Using lambdas
## list(~ mean(., trim = .2), ~ median(., na.rm = TRUE))
## This warning is displayed once every 8 hours.
## Call `lifecycle::last_lifecycle_warnings()` to see where this warning was generated.
# Duplicate each column. Now there's 2 columns per locus, both containing the same bi-allelic genotype info.
b <- a[rep(names(a), rep(2, times=ncol(a)))] %>% clean_names()
ncol(b) == ncol(a)*2 #should be TRUE
## [1] TRUE
# For each locus, extract the first allele in column 1, and the second allele in column 2.
c <- b #duplicate dataframe
odds <- seq(from = 1, to = ncol(c), by = 2)
evens <- seq(from = 2, to = ncol(c), by = 2)
odds.names <- colnames(b[odds])
evens.names <- colnames(b[evens])
for (i in 1:length(odds)) {
c[[odds.names[i]]] <- substring(b[[odds.names[i]]], first = 1, last = 1)
}
for (i in 1:length(evens)) {
c[[evens.names[i]]] <- substring(b[[evens.names[i]]], first = 2, last = 2)
}
# Now replace the character allele information with Colony's way of numeric coding.
# There are 2 columns for each locus (e.g. v1 and v1_2), and only 3 options for each allele:
# 1= B allele
# 2= A allele
# 0= missing allele
(geno.matrix4Colony.recode <- c %>%
mutate_all(funs(str_replace(., "B", "1"))) %>%
mutate_all(funs(str_replace(., "A", "2"))) %>%
mutate(., across(everything(), ~replace_na(.x, 0))))
## # A tibble: 43 x 1,938
## v1 v1_2 v2 v2_2 v3 v3_2 v4 v4_2 v5 v5_2 v6 v6_2 v7
## <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr>
## 1 1 1 2 1 2 2 1 1 2 2 2 1 1
## 2 0 0 2 2 0 0 2 2 0 0 2 2 2
## 3 0 0 2 2 1 1 2 2 1 1 2 2 2
## 4 0 0 2 2 1 1 2 2 0 0 1 1 2
## 5 0 0 2 2 2 1 1 1 1 1 2 1 1
## 6 0 0 2 2 1 1 2 1 2 2 2 2 1
## 7 2 2 0 0 1 1 0 0 1 1 1 1 2
## 8 1 1 1 1 1 1 0 0 1 1 1 1 2
## 9 1 1 2 2 1 1 2 2 1 1 1 1 2
## 10 1 1 2 2 2 1 1 1 2 2 2 1 1
## # ... with 33 more rows, and 1,925 more variables: v7_2 <chr>, v8 <chr>,
## # v8_2 <chr>, v9 <chr>, v9_2 <chr>, v10 <chr>, v10_2 <chr>, v11 <chr>,
## # v11_2 <chr>, v12 <chr>, v12_2 <chr>, v13 <chr>, v13_2 <chr>, v14 <chr>,
## # v14_2 <chr>, v15 <chr>, v15_2 <chr>, v16 <chr>, v16_2 <chr>, v17 <chr>,
## # v17_2 <chr>, v18 <chr>, v18_2 <chr>, v19 <chr>, v19_2 <chr>, v20 <chr>,
## # v20_2 <chr>, v21 <chr>, v21_2 <chr>, v22 <chr>, v22_2 <chr>, v23 <chr>,
## # v23_2 <chr>, v24 <chr>, v24_2 <chr>, v25 <chr>, v25_2 <chr>, v26 <chr>, ...
# Save genotype matrix to file, while also adding a column with sample number
write_delim(cbind(sampleID=paste("O", geno.matrix4Colony$sample.id, sep=""),
geno.matrix4Colony.recode),
file="../results/genotype/colony/geno.matrix.tab", delim=" ", col_names=FALSE)
I created a text file that will be the input for Colony. I used Colony’s example input file to do so.
Here’s a snapshot of the input file, truncating the genotype info (there are 53 samples, but here I only show 2)
'rkc_snps' !Dataset name
'rkc_colony' !Output file name
43 ! Number of offspring in the sample
263 ! Number of loci
100 ! Seed for random number generator
0 ! 0/1=Not updating/updating allele frequency
2 ! 2/1=Dioecious/Monoecious species
0 ! 0/1=No inbreeding/inbreeding
0 ! 0/1=Diploid species/HaploDiploid species
0 0 ! 0/1=Polygamy/Monogamy for males & females
0 ! 0/1=Clone inference =No/Yes
0 ! 0/1=Full sibship size scaling =No/Yes
0 ! 0,1,2,3=No,weak,medium,strong sibship size prior; mean paternal & meteral sibship size
0 ! 0/1=Unknown/Known population allele frequency
1 ! Number of runs
2 ! Length of run
0 ! 0/1=Monitor method by Iterate#/Time in second
100000 ! Monitor interval in Iterate# / in seconds
0 ! non-Windows version
1 ! Fulllikelihood
3 ! 1/2/3=low/medium/high Precision for Full likelihood
V@ !Marker names
0@ !Marker types, 0/1 = codominant/dominant
0.000@ !Allelic dropout rate
0.0001@ !false allele rate
OTank_10_Crab_1 1 1 2 1 2 2 2 2 2 2 2 2 1 1 0 0 2 2 1 1 2 2 2 2 2 1 1 1 2 2 2 2 2 1 2 2 1 1 2 2 2 1 2 2 1 1 1 1 2 1 2 1 2 2 1 1 2 2 2 2 2 2 1 1 2 2 1 1 2 2 0 0 2 2 2 2 2 1 2 2 1 1 0 0 1 1 1 1 2 1 1 1 1 1 1 1 2 2 2 2 0 0 2 2 1 1 1 1 2 2 1 1 2 2 2 2 2 1 2 2 0 0 1 1 2 1 1 1 1 1 2 2 1 1 2 2 1 1 1 1 0 0 2 2 2 1 2 2 2 1 1 1 0 0 2 2 2 1 2 1 2 1 2 1 2 2 2 2 2 2 2 1 2 1 2 2 2 2 2 1 1 1 2 1 1 1 2 2 0 0 2 2 2 2 1 1 2 2 2 1 2 2 2 2 2 1 1 1 1 1 0 0 1 1 2 1 2 2 2 2 0 0 0 0 1 1 2 1 0 0 2 1 2 1 1 1 2 1 1 1 0 0 2 2 2 1 2 2 2 2 0 0 2 2 2 1 1 1 1 1 1 1 2 2 0 0 0 0 2 2 2 2 1 1 2 2 2 1 2 2 2 2 1 1 2 2 0 0 2 1 2 2 1 1 1 1 1 1 2 1 2 1 0 0 2 2 2 1 1 1 1 1 2 2 2 2 1 1 1 1 0 0 2 2 2 2 1 1 2 2 2 2 1 1 2 2 2 2 0 0 1 1 2 2 2 2 1 1 1 1 2 1 0 0 0 0 1 1 1 1 2 2 2 2 2 2 2 2 2 2 1 1 2 1 2 1 2 1 2 1 2 2 1 1 2 1 2 2 0 0 2 1 2 1 1 1 2 2 2 1 2 1 2 2 2 2 2 2 1 1 0 0 2 1 2 2 2 2 2 2 2 2 1 1 1 1 2 2 1 1 1 1 2 1 1 1 1 1 1 1 2 2 2 1 2 2 2 1 2 1 2 2 2 2 1 1 1 1 2 1 2 1 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 1 1 1 2 1 2 2 1 1 2 1 0 0 2 2 2 1 2 2 2 2 2 2 2 2 0 0 1 1 2 2 2 2 1 1 2 1 2 2 2 1 2 2 1 1 2 1
OTank_10_Crab_2 0 0 2 2 0 0 0 0 2 2 1 1 0 0 1 1 2 2 0 0 1 1 0 0 2 2 1 1 2 2 0 0 2 2 1 1 0 0 0 0 1 1 2 2 1 1 0 0 2 1 0 0 0 0 0 0 2 2 2 1 2 2 2 1 1 1 1 1 2 2 0 0 1 1 2 2 0 0 2 2 0 0 0 0 1 1 0 0 1 1 2 2 1 1 1 1 1 1 0 0 2 2 2 2 1 1 0 0 0 0 1 1 0 0 2 2 0 0 2 2 1 1 2 2 0 0 0 0 1 1 1 1 2 2 1 1 1 1 2 2 1 1 0 0 2 2 0 0 0 0 2 1 2 2 0 0 2 2 1 1 0 0 2 2 2 2 1 1 1 1 2 2 1 1 0 0 2 2 2 2 0 0 1 1 2 2 2 2 0 0 0 0 0 0 2 2 0 0 0 0 2 2 2 2 1 1 2 2 2 2 2 2 0 0 1 1 1 1 0 0 0 0 2 2 0 0 2 2 0 0 0 0 1 1 2 2 2 2 2 2 2 2 1 1 2 2 0 0 0 0 1 1 1 1 0 0 2 2 0 0 0 0 2 2 2 2 2 2 1 1 1 1 1 1 2 2 2 2 2 2 2 2 0 0 0 0 2 2 0 0 2 2 0 0 1 1 0 0 2 2 2 2 0 0 0 0 0 0 2 2 1 1 0 0 0 0 0 0 0 0 2 2 0 0 1 1 2 2 2 2 2 2 0 0 1 1 2 2 1 1 0 0 1 1 2 2 1 1 2 2 1 1 2 2 2 1 2 2 0 0 2 2 1 1 0 0 2 2 2 2 0 0 0 0 1 1 0 0 0 0 2 2 2 2 0 0 1 1 2 2 0 0 0 0 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 2 2 2 1 2 2 0 0 1 1 1 1 0 0 2 2 2 2 2 2 0 0 0 0 0 0 2 2 2 2 2 1 2 2 1 1 0 0 0 0 1 1 2 1 2 2 2 2 2 2 0 0 2 2 2 2 1 1 2 2 0 0 0 0 2 2 2 2 0 0 2 2 2 2 1 1 2 2 0 0 2 2 2 2 2 2 2 2 2 2 0 0 1 1 0 0 2 2 1 1 0 0 2 2 2 2 2 2 2 2 0 0 0 0
Note: I have to be in the colony directory to run it, so I change my directory in the same code chunk prior to executing the ./colony2s.out script
cd ../results/genotype/colony
./colony2s.out IFN:colony2_rkc.dat
cat ../results/genotype/colony/rkc_colony.BestCluster
## ClusterIndex Probability OffspringID FatherID MotherID
## 1 0.8318 OTank_10_Crab_1 *1 #1
## 1 0.8318 OTank_11_Crab_3 *1 #6
## 1 0.8318 OTank_2_Crab_2 *23 #1
## 1 0.8318 OTank_5_Crab_3 *23 #1
## 1 0.8318 OTank_9_Crab_1 *23 #6
## 2 1.0000 OTank_10_Crab_2 *2 #2
## 3 0.7791 OTank_10_Crab_3 *3 #3
## 3 0.7791 OTank_11_Crab_1 *4 #4
## 3 0.7791 OTank_13_Crab_3 *3 #9
## 3 0.7791 OTank_16_Crab_4 *13 #14
## 3 0.7791 OTank_20_Crab_2 *13 #4
## 3 0.7791 OTank_3_Crab_3 *4 #25
## 3 0.7791 OTank_9_Crab_4 *3 #4
## 4 1.0000 OTank_11_Crab_2 *5 #5
## 5 0.8604 OTank_13_Crab_1 *6 #7
## 5 0.8604 OTank_18_Crab_3 *16 #7
## 6 0.9701 OTank_13_Crab_2 *7 #8
## 6 0.9701 OTank_16_Crab_1 *11 #8
## 6 0.9701 OTank_3_Crab_1 *7 #23
## 6 0.9701 OTank_7_Crab_3 *7 #8
## 7 0.6460 OTank_15_Crab_1 *8 #10
## 7 0.6460 OTank_18_Crab_2 *15 #16
## 7 0.6460 OTank_1_Crab_2 *18 #18
## 7 0.6460 OTank_2_Crab_3 *24 #16
## 7 0.6460 OTank_4_Crab_1 *8 #26
## 7 0.6460 OTank_4_Crab_2 *8 #27
## 7 0.6460 OTank_4_Crab_3 *8 #16
## 7 0.6460 OTank_5_Crab_1 *8 #18
## 8 1.0000 OTank_15_Crab_2 *9 #11
## 9 0.9526 OTank_15_Crab_3 *10 #12
## 10 1.0000 OTank_16_Crab_2 *12 #13
## 11 1.0000 OTank_18_Crab_1 *14 #15
## 12 0.9963 OTank_1_Crab_1 *17 #17
## 13 0.8213 OTank_1_Crab_3 *19 #19
## 14 1.0000 OTank_20_Crab_1 *20 #20
## 15 0.7907 OTank_20_Crab_3 *21 #21
## 16 1.0000 OTank_2_Crab_1 *22 #22
## 17 0.9207 OTank_3_Crab_2 *25 #24
## 17 0.9207 OTank_7_Crab_1 *27 #24
## 18 1.0000 OTank_5_Crab_2 *26 #28
## 19 0.3920 OTank_7_Crab_4 *28 #29
## 19 0.3920 OTank_9_Crab_2 *28 #29
## 20 1.0000 OTank_9_Crab_3 *29 #30
colony.clusters <- read_table("../results/genotype/colony/rkc_colony.BestCluster", col_names=TRUE) %>% clean_names() %>%
mutate_all(funs(str_replace(., "\\*|#", ""))) %>%
mutate(cluster_index=as.numeric(cluster_index), father_id=as.numeric(father_id), mother_id=as.numeric(mother_id), probability=as.numeric(probability)) %>%
mutate(offspring_id=str_replace(offspring_id, "O", "")) %>%
as.data.frame() %>% left_join(sample.info, by = c("offspring_id"="Sample")) %>%
mutate(Treatment=factor(Treatment, levels=c("Ambient", "Moderate", "Low"))) %>%
column_to_rownames("offspring_id") %>%
mutate(offspring_id=rownames(.))
##
## -- Column specification --------------------------------------------------------
## cols(
## ClusterIndex = col_double(),
## Probability = col_double(),
## OffspringID = col_character(),
## FatherID = col_character(),
## MotherID = col_character()
## )
save(colony.clusters, file = "../results/genotype/colony/best-cluster-adult")
father.order <- as.character(c(1,2,5,17,18,19,22,24,27,4,28,20,21,25,29,8,13,6,9,10,11,12,14,15,16,26,3,7,23))
mother.order <- as.character(c(20,21,23,25,26,27,30,4,6,24,29,2,3,5,17,19,22,1,18,8,7,9,10,11,12,13,14,15,28,16))
ggplot(colony.clusters, aes(x = father_id %>% as.character, fill = Treatment)) +
geom_dotplot(stackgroups = TRUE, binwidth = 1, binpositions = "all") +
theme_minimal() + scale_x_discrete(limits=father.order) +
scale_fill_manual(values = c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c")) +
xlab("Father ID") +
theme(axis.text.y = element_blank(), axis.title.y = element_blank())
ggplot(colony.clusters, aes(x = mother_id %>% as.character, fill = Treatment)) +
geom_dotplot(stackgroups = TRUE, binwidth = 1, binpositions = "all") +
theme_minimal() + scale_x_discrete(limits=mother.order) +
scale_fill_manual(values = c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c")) +
xlab("Mother ID") +
theme(axis.text.y = element_blank(), axis.title.y = element_blank())
# Plot mother ~ father ID
ggplotly(
ggplot(colony.clusters,
aes(x=father_id %>% as.character, y=mother_id %>% as.character, colour=Treatment, text=offspring_id)) + #size=probability,
geom_point(alpha=0.65, size=5, position = position_dodge(width=0.5)) + theme_minimal() +
scale_size_continuous(guide="none") +
scale_x_discrete(limits=father.order) +
scale_y_discrete(limits=mother.order) +
scale_color_manual(values = c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c")) +
xlab("Father ID") + ylab("Mother ID"), tooltip = "text")
# How many fathers and mothers does each Ph group have?
colony.clusters %>%
group_by(Treatment) %>%
summarise(n_fathers=n_distinct(father_id),n_mothers=n_distinct(mother_id))
## # A tibble: 3 x 3
## Treatment n_fathers n_mothers
## <fct> <int> <int>
## 1 Ambient 14 14
## 2 Moderate 11 12
## 3 Low 14 13
I used the dotplots to identify parents that contributed multiple offspring in our samples, and selected samples to remove to get rid of siblings.
# Count how many of each treatment remain after removing half and full sibs
`%!in%` = Negate(`%in%`) #function that is the opposite of "%in%"
# Generate a list of samples that should not contain full or half sibs
nosibs <- (sample.info %>% filter(Sample %!in% c("Tank_13_Crab_2", "Tank_7_Crab_4", "Tank_2_Crab_2",
"Tank_11_Crab_1", "Tank_20_Crab_2", "Tank_11_Crab_3",
"Tank_3_Crab_2", "Tank_5_Crab_3", "Tank_5_Crab_1",
"Tank_7_Crab_3", "Tank_18_Crab_3", "Tank_18_Crab_2",
"Tank_4_Crab_3", "Tank_15_Crab_1", "Tank_4_Crab_2",
"Tank_10_Crab_3", "Tank_13_Crab_3")))$Sample
# Now double check that we no longer have siblings
ggplot(colony.clusters %>% filter(offspring_id %in% nosibs), aes(x = father_id %>% as.character, fill = Treatment)) +
geom_dotplot(stackgroups = TRUE, binwidth = 1, binpositions = "all") +
theme_minimal() + scale_x_discrete(limits=father.order) +
scale_fill_manual(values = c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c")) +
xlab("Father ID") +
theme(axis.text.y = element_blank(), axis.title.y = element_blank())
ggplot(colony.clusters %>% filter(offspring_id %in% nosibs), aes(x = mother_id %>% as.character, fill = Treatment)) +
geom_dotplot(stackgroups = TRUE, binwidth = 1, binpositions = "all") +
theme_minimal() + scale_x_discrete(limits=mother.order) +
scale_fill_manual(values = c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c")) +
xlab("Mother ID") +
theme(axis.text.y = element_blank(), axis.title.y = element_blank())
# How many samples in each treatment remain?
colony.clusters %>% filter(offspring_id %in% nosibs) %>% group_by(Treatment) %>% tally()
## # A tibble: 3 x 2
## Treatment n
## <fct> <int>
## 1 Ambient 9
## 2 Moderate 9
## 3 Low 8
path_to_file <- "../results/genotype/rkc_rnaseq_genotypes-final_miss20.recode.vcf"
filename <- read.pcadapt(path_to_file, type = "vcf")
## Warning in file2other(input, type, match.arg(type.out), match.arg(allele.sep)):
## Converter vcf to pcadapt is deprecated. Please use PLINK for conversion to bed
## (and QC).
## 1 variant(s) have been discarded as they are not SNPs.
## Summary:
##
## - input file: ../results/genotype/rkc_rnaseq_genotypes-final_miss20.recode.vcf
## - output file: C:\Users\LAURA~1.SPE\AppData\Local\Temp\Rtmp82cYB0\file22f381f7179a8.pcadapt
##
## - number of individuals detected: 43
## - number of loci detected: 1429
##
## 1428 lines detected.
## 43 columns detected.
This is the order of samples in the vcf
Tank_10_Crab_1 Tank_10_Crab_2 Tank_10_Crab_3 Tank_11_Crab_1 Tank_11_Crab_2 Tank_11_Crab_3 Tank_13_Crab_1 Tank_13_Crab_2 Tank_13_Crab_3 Tank_15_Crab_1 Tank_15_Crab_2 Tank_15_Crab_3 Tank_16_Crab_1 Tank_16_Crab_2 Tank_16_Crab_4 Tank_18_Crab_1 Tank_18_Crab_2 Tank_18_Crab_3 Tank_1_Crab_1 Tank_1_Crab_2 Tank_1_Crab_3 Tank_20_Crab_1 Tank_20_Crab_2 Tank_20_Crab_3 Tank_2_Crab_1 Tank_2_Crab_2 Tank_2_Crab_3 Tank_3_Crab_1 Tank_3_Crab_2 Tank_3_Crab_3 Tank_4_Crab_1 Tank_4_Crab_2 Tank_4_Crab_3 Tank_5_Crab_1 Tank_5_Crab_2 Tank_5_Crab_3 Tank_7_Crab_1 Tank_7_Crab_3 Tank_7_Crab_4 Tank_9_Crab_1 Tank_9_Crab_2 Tank_9_Crab_3 Tank_9_Crab_4
tab.annot.gen$sample.id #good, this order (from the SNPRelate analysis) is the same as in the VCF. Can use this to annotate
## [1] "Tank_10_Crab_1" "Tank_10_Crab_2" "Tank_10_Crab_3" "Tank_11_Crab_1"
## [5] "Tank_11_Crab_2" "Tank_11_Crab_3" "Tank_13_Crab_1" "Tank_13_Crab_2"
## [9] "Tank_13_Crab_3" "Tank_15_Crab_1" "Tank_15_Crab_2" "Tank_15_Crab_3"
## [13] "Tank_16_Crab_1" "Tank_16_Crab_2" "Tank_16_Crab_4" "Tank_18_Crab_1"
## [17] "Tank_18_Crab_2" "Tank_18_Crab_3" "Tank_1_Crab_1" "Tank_1_Crab_2"
## [21] "Tank_1_Crab_3" "Tank_20_Crab_1" "Tank_20_Crab_2" "Tank_20_Crab_3"
## [25] "Tank_2_Crab_1" "Tank_2_Crab_2" "Tank_2_Crab_3" "Tank_3_Crab_1"
## [29] "Tank_3_Crab_2" "Tank_3_Crab_3" "Tank_4_Crab_1" "Tank_4_Crab_2"
## [33] "Tank_4_Crab_3" "Tank_5_Crab_1" "Tank_5_Crab_2" "Tank_5_Crab_3"
## [37] "Tank_7_Crab_1" "Tank_7_Crab_3" "Tank_7_Crab_4" "Tank_9_Crab_1"
## [41] "Tank_9_Crab_2" "Tank_9_Crab_3" "Tank_9_Crab_4"
To choose K, principal component analysis should first be performed with a large enough number of principal components
The ‘scree plot’ displays in decreasing order the percentage of variance explained by each PC. Up to a constant, it corresponds to the eigenvalues in decreasing order. The ideal pattern in a scree plot is a steep curve followed by a bend and a straight line. The eigenvalues that correspond to random variation lie on a straight line whereas the ones that correspond to population structure lie on a steep curve. We recommend to keep PCs that correspond to eigenvalues to the left of the straight line (Cattell’s rule).
The first 8 PC axes could be informative.
x <- pcadapt(input = filename, K = 30, min.maf=0.05)
plot(x, option = "screeplot") + theme_minimal() + scale_x_discrete(limits=seq(1:30))
## Warning: `guides(<scale> = FALSE)` is deprecated. Please use `guides(<scale> =
## "none")` instead.
## Warning: Continuous limits supplied to discrete scale.
## Did you mean `limits = factor(...)` or `scale_*_continuous()`?
Another option to choose the number of PCs is based on the ‘score plot’ that displays population structure. The score plot displays the projections of the individuals onto the specified principal components. Using the score plot, the choice of K can be limited to the values of K that correspond to a relevant level of population structure.
plot(x, option = "scores", i=1, j=2, pop=tab.annot.gen$Treatment)
## Warning: Use of `df$Pop` is discouraged. Use `Pop` instead.
plot(x, option = "scores", j=1, i=3, pop=tab.annot.gen$Treatment)
## Warning: Use of `df$Pop` is discouraged. Use `Pop` instead.
plot(x, option = "scores", j=1, i=4, pop=tab.annot.gen$Treatment)
## Warning: Use of `df$Pop` is discouraged. Use `Pop` instead.
plot(x, option = "scores", j=1, i=5, pop=tab.annot.gen$Treatment)
## Warning: Use of `df$Pop` is discouraged. Use `Pop` instead.
plot(x, option = "scores", j=1, i=6, pop=tab.annot.gen$Treatment)
## Warning: Use of `df$Pop` is discouraged. Use `Pop` instead.
plot(x, option = "scores", j=1, i=7, pop=tab.annot.gen$Treatment)
## Warning: Use of `df$Pop` is discouraged. Use `Pop` instead.
plot(x, option = "scores", j=1, i=8, pop=tab.annot.gen$Treatment)
## Warning: Use of `df$Pop` is discouraged. Use `Pop` instead.
plot(x, option = "scores", j=1, i=9, pop=tab.annot.gen$Treatment)
## Warning: Use of `df$Pop` is discouraged. Use `Pop` instead.
plot(x, option = "scores", j=1, i=10, pop=tab.annot.gen$Treatment)
## Warning: Use of `df$Pop` is discouraged. Use `Pop` instead.
plot(x, option = "scores", j=1, i=11, pop=tab.annot.gen$Treatment)
## Warning: Use of `df$Pop` is discouraged. Use `Pop` instead.
plot(x, option = "scores", j=1, i=12, pop=tab.annot.gen$Treatment)
## Warning: Use of `df$Pop` is discouraged. Use `Pop` instead.
plot(x, option = "scores", j=1, i=13, pop=tab.annot.gen$Treatment)
## Warning: Use of `df$Pop` is discouraged. Use `Pop` instead.
plot(x, option = "scores", j=1, i=14, pop=tab.annot.gen$Treatment)
## Warning: Use of `df$Pop` is discouraged. Use `Pop` instead.
Certainly looks like the first 5 PC axes result in clusters, and additional PC axes results in no clustering. PC5 does indicate some slight differences between low pH and the other treatments (despite existence of outlier)
x <- pcadapt(filename, K = 5)
summary(x)
## Length Class Mode
## scores 215 -none- numeric
## singular.values 5 -none- numeric
## loadings 7140 -none- numeric
## zscores 7140 -none- numeric
## af 1428 -none- numeric
## maf 1428 -none- numeric
## chi2.stat 1428 -none- numeric
## stat 1428 -none- numeric
## gif 1 -none- numeric
## pvalues 1428 -none- numeric
## pass 1199 -none- numeric
Identify the outlier on PC5 - is it Tank & Crab 4?
x$scores %>% data.frame() %>% mutate(id=row_number()) %>% arrange(X5)
## X1 X2 X3 X4 X5 id
## 1 0.0480173574 0.070513482 0.05831606 0.035451143 -0.8217070017 2
## 2 -0.0284995457 -0.006935602 -0.11406864 0.116510654 -0.1871652053 29
## 3 -0.0026658151 0.007998926 -0.23793244 0.145366266 -0.1237986721 25
## 4 0.0201971905 0.299632529 0.25825649 0.063285251 -0.0918344004 26
## 5 0.0097514754 0.008294110 -0.17429159 0.280063023 -0.0674766409 24
## 6 -0.2865907364 -0.157422413 0.16336212 -0.014716501 -0.0557496084 21
## 7 -0.0367947538 0.076752019 -0.22586493 -0.297861882 -0.0525191566 22
## 8 -0.1942682188 -0.145232861 0.05993271 -0.064875828 -0.0457046099 17
## 9 0.2476748966 -0.164953140 0.13787081 -0.040106327 -0.0418612215 43
## 10 -0.0359301495 0.057676781 -0.09806481 -0.050621791 -0.0276530764 5
## 11 0.0213966462 0.063330027 -0.19755454 0.255050817 -0.0272329796 39
## 12 0.0115013150 0.051240604 -0.12169669 0.072586246 -0.0217196343 16
## 13 -0.2320943072 -0.088102948 0.12742570 -0.034770510 -0.0200573742 20
## 14 -0.2238989892 -0.166295653 0.06223642 -0.055318243 -0.0101333292 10
## 15 0.0023357008 0.041242033 -0.18106253 0.228133060 -0.0066345694 41
## 16 -0.2064464341 -0.172119249 0.06827250 0.044002687 -0.0037591295 33
## 17 -0.0554756533 0.089745986 -0.19943837 -0.371889381 -0.0003135586 28
## 18 0.0074051493 0.149453383 -0.16397879 -0.308511346 0.0017218041 8
## 19 -0.2490983377 -0.159031259 0.11179553 -0.020661979 0.0039998440 32
## 20 -0.0197009510 0.087927923 -0.20634741 -0.416054075 0.0047011745 38
## 21 -0.0258774880 0.023172562 -0.02438733 0.164646811 0.0077390378 42
## 22 -0.0110573389 0.373284452 0.27179304 -0.011542324 0.0100439385 1
## 23 0.0255347533 0.109813057 -0.18868614 -0.284685995 0.0105580302 13
## 24 -0.0183845568 -0.015319286 -0.17774058 0.210920053 0.0116566735 11
## 25 0.2407971131 -0.187489871 0.09431895 -0.012817467 0.0154709053 3
## 26 0.2221676620 -0.139692685 0.01729600 -0.025161398 0.0163500894 15
## 27 0.2417489831 -0.169043429 0.07945793 -0.056162290 0.0205570765 9
## 28 0.2786154487 -0.112379696 0.10262905 -0.084928232 0.0212824552 4
## 29 0.0237631907 -0.004564000 -0.10815204 0.063031849 0.0245602268 37
## 30 0.2535740446 -0.192896241 0.10951555 -0.008600957 0.0280038091 30
## 31 -0.0087477866 0.014139872 -0.20997734 0.173734801 0.0386918741 35
## 32 -0.2230822089 -0.102086048 0.10339002 -0.032656042 0.0439392161 31
## 33 0.2732472990 -0.156166009 0.10761114 -0.035697313 0.0530028119 23
## 34 0.0108410427 0.324748639 0.28295508 0.027676482 0.0532539625 6
## 35 0.0201052904 0.296143847 0.17398331 0.048911711 0.0561725357 40
## 36 0.2302250362 -0.121951806 0.10706378 -0.079988055 0.0564911360 12
## 37 -0.2390699596 -0.160786167 0.10355145 -0.023488221 0.0626581028 27
## 38 -0.2266786108 -0.145672136 0.11919649 -0.013722537 0.0667938754 34
## 39 0.0091546026 -0.015943541 -0.10116267 0.031419650 0.1152368391 19
## 40 0.0456386202 0.028047024 -0.10702097 0.113145496 0.1250895438 14
## 41 -0.0003455465 0.319648261 0.21227814 0.013986013 0.1500382603 36
## 42 0.0058109236 0.063115394 -0.07708890 0.106852162 0.2559344309 7
## 43 -0.0299687379 0.058180697 -0.09836331 0.111760510 0.3244047748 18
tab.annot.gen$sample.id[2]
## [1] "Tank_10_Crab_2"
A Manhattan plot displays −log10 of the p-values.
plot(x , option = "manhattan")
Check the expected uniform distribution of the p-values using a Q-Q plot
plot(x, option = "qqplot")
## Warning: `guides(<scale> = FALSE)` is deprecated. Please use `guides(<scale> =
## "none")` instead.
Histogram of p-values confirms that most of the p-values follow an uniform distribution. The excess of small p-values indicates the presence of outliers.
hist(x$pvalues, xlab = "p-values", main = NULL, breaks = 50, col = "orange")
The presence of outliers is also visible when plotting a histogram of the test statistic Dj.
plot(x, option = "stat.distribution") + theme_minimal()
## Warning: Removed 12 rows containing non-finite values (stat_bin).
## Choosing a cutoff for outlier detection
qval <- qvalue(x$pvalues)$qvalues
alpha <- 0.1
outliers <- which(qval < alpha)
length(outliers)
## [1] 71
# padj <- p.adjust(x$pvalues,method="BH")
# alpha <- 0.1
# outliers <- which(padj < alpha)
# length(outliers)
# padj <- p.adjust(x$pvalues,method="bonferroni")
# alpha <- 0.1
# outliers <- which(padj < alpha)
# length(outliers)
It may be interesting to associate outliers with one of the K principal component to have indication about evolutionary pressure. The function get.pc allows to achieve that:
snp_pc <- get.pc(x, outliers)
x %>% str()
## List of 11
## $ scores : num [1:43, 1:5] -0.0111 0.048 0.2408 0.2786 -0.0359 ...
## $ singular.values: num [1:5] 0.372 0.349 0.309 0.3 0.277
## $ loadings : num [1:1428, 1:5] 0.00546 -0.03349 -0.03866 -0.00935 NA ...
## $ zscores : num [1:1428, 1:5] 0.353 -2.255 -2.531 -0.627 NA ...
## $ af : num [1:1428] 0.3919 0.3571 0.7703 0.1 0.0455 ...
## $ maf : num [1:1428] 0.3919 0.3571 0.2297 0.1 0.0455 ...
## $ chi2.stat : num [1:1428] 4.98 5.87 6 2.98 NA ...
## $ stat : num [1:1428] 6.48 7.64 7.81 3.88 NA ...
## $ gif : num 1.3
## $ pvalues : num [1:1428] 0.418 0.319 0.306 0.702 NA ...
## $ pass : int [1:1199] 1 2 3 4 7 8 9 10 13 14 ...
## - attr(*, "K")= num 5
## - attr(*, "method")= chr "mahalanobis"
## - attr(*, "min.maf")= num 0.05
## - attr(*, "class")= chr "pcadapt"
snps.outlier <- data.frame(locus=(extract.gt(vcf) %>% rownames())[outliers]) %>%
inner_join(snps.annot %>% mutate(locus=paste(chrom, start.snp+1, sep="_")),
by="locus")
snps.outlier %>%
filter(geneID.gene %in%
unique(c(rownames(diffex.AM), rownames(diffex.AL), rownames(diffex.ML)))) # 35 SNPs located in DEGs
## locus chrom start.gene end.gene
## 1 HiC_scaffold_21_22644667 HiC_scaffold_21 22642452 22668074
## 2 HiC_scaffold_21_22644673 HiC_scaffold_21 22642452 22668074
## 3 HiC_scaffold_5_2857283 HiC_scaffold_5 2840892 2901512
## geneID.gene start.snp end.snp .source .overlap
## 1 evm.TU.HiC_scaffold_21.266 22644666 22644668 1 2
## 2 evm.TU.HiC_scaffold_21.266 22644672 22644674 1 2
## 3 evm.TU.HiC_scaffold_5.188 2857282 2857284 1 2
## id blast_type seq_length hit_acc
## 1 evm.model.HiC_scaffold_21.266 BLASTX1 1597 XP_045112009.1
## 2 evm.model.HiC_scaffold_21.266 BLASTX1 1597 XP_045112009.1
## 3 evm.model.HiC_scaffold_5.188 BLASTX1 2768 XP_042870173.1
## hit_desc
## 1 nephrin-like [Portunus trituberculatus]
## 2 nephrin-like [Portunus trituberculatus]
## 3 BTB/POZ domain-containing protein 7-like isoform X2 [Penaeus japonicus]\001XP_042870174.1 BTB/POZ domain-containing protein 7-like isoform X2 [Penaeus japonicus]
## score e_value percent_ident percent_ident.num query_start query_end hit_start
## 1 844 3e-95 225/505 (44%) 0.44 242 1597 242
## 2 844 3e-95 225/505 (44%) 0.44 242 1597 242
## 3 2682 0e+00 579/699 (82%) 0.82 1 1968 4
## hit_end
## 1 732
## 2 732
## 3 696
snps.outlier %>%
left_join(geneInfo %>% select(id, moduleColor, GS.pH, p.GS.pH, match(modules.cor,names(geneInfo)), match(modules.p,names(geneInfo))), by=c("geneID.gene"="id")) %>%
filter(p.GS.pH < 0.05)
## locus chrom start.gene end.gene
## 1 HiC_scaffold_5_2857283 HiC_scaffold_5 2840892 2901512
## geneID.gene start.snp end.snp .source .overlap
## 1 evm.TU.HiC_scaffold_5.188 2857282 2857284 1 2
## id blast_type seq_length hit_acc
## 1 evm.model.HiC_scaffold_5.188 BLASTX1 2768 XP_042870173.1
## hit_desc
## 1 BTB/POZ domain-containing protein 7-like isoform X2 [Penaeus japonicus]\001XP_042870174.1 BTB/POZ domain-containing protein 7-like isoform X2 [Penaeus japonicus]
## score e_value percent_ident percent_ident.num query_start query_end hit_start
## 1 2682 0 579/699 (82%) 0.82 1 1968 4
## hit_end moduleColor GS.pH p.GS.pH MM.brown MM.pink MM.lightcyan1
## 1 696 cyan 0.5141655 0.0004955612 0.5817201 0.5423984 0.3426113
## MM.red MM.cyan MM.green MM.darkgreen p.MM.brown p.MM.pink
## 1 0.1693808 0.9487437 -0.5823082 -0.1372234 5.334082e-05 0.000206758
## p.MM.lightcyan1 p.MM.red p.MM.cyan p.MM.green p.MM.darkgreen
## 1 0.02634631 0.2835595 1.288083e-21 5.220111e-05 0.3861715
snps.outlier %>%
left_join(geneInfo %>% select(id, moduleColor, GS.pH, p.GS.pH, match(modules.cor,names(geneInfo)), match(modules.p,names(geneInfo))), by=c("geneID.gene"="id")) %>%
filter(moduleColor %in% modules)
## locus chrom start.gene end.gene
## 1 HiC_scaffold_18_22682683 HiC_scaffold_18 22678823 22688567
## 2 HiC_scaffold_32_4446859 HiC_scaffold_32 4398822 4459370
## 3 HiC_scaffold_33_47080180 HiC_scaffold_33 47070280 47131979
## 4 HiC_scaffold_33_51865876 HiC_scaffold_33 51857638 51883444
## 5 HiC_scaffold_5_2857283 HiC_scaffold_5 2840892 2901512
## geneID.gene start.snp end.snp .source .overlap
## 1 evm.TU.HiC_scaffold_18.25 22682682 22682684 1 2
## 2 evm.TU.HiC_scaffold_32.112 4446858 4446860 1 2
## 3 evm.TU.HiC_scaffold_33.166 47080179 47080181 1 2
## 4 evm.TU.HiC_scaffold_33.180 51865875 51865877 1 2
## 5 evm.TU.HiC_scaffold_5.188 2857282 2857284 1 2
## id blast_type seq_length hit_acc
## 1 evm.model.HiC_scaffold_18.25 BLASTX1 2820 XP_025108096.1
## 2 evm.model.HiC_scaffold_32.112 BLASTX1 3217 XP_042211416.1
## 3 evm.model.HiC_scaffold_33.166 BLASTX1 3016 XP_042212591.1
## 4 evm.model.HiC_scaffold_33.180 BLASTX1 1644 XP_042222493.1
## 5 evm.model.HiC_scaffold_5.188 BLASTX1 2768 XP_042870173.1
## hit_desc
## 1 uncharacterized protein LOC112572570 isoform X2 [Pomacea canaliculata]
## 2 insulin-like growth factor 1 receptor [Homarus americanus]
## 3 splicing factor, suppressor of white-apricot homolog isoform X2 [Homarus americanus]
## 4 plexin-B-like isoform X1 [Homarus americanus]\001XP_042222494.1 plexin-B-like isoform X1 [Homarus americanus]
## 5 BTB/POZ domain-containing protein 7-like isoform X2 [Penaeus japonicus]\001XP_042870174.1 BTB/POZ domain-containing protein 7-like isoform X2 [Penaeus japonicus]
## score e_value percent_ident percent_ident.num query_start query_end hit_start
## 1 297 2e-23 75/209 (35%) 0.35 1149 1745 71
## 2 396 2e-34 93/239 (38%) 0.38 115 828 82
## 3 783 7e-84 174/278 (62%) 0.62 2 703 63
## 4 2151 0e+00 441/541 (81%) 0.81 1 1617 971
## 5 2682 0e+00 579/699 (82%) 0.82 1 1968 4
## hit_end moduleColor GS.pH p.GS.pH MM.brown MM.pink
## 1 268 red 0.02515869 0.8743375492 0.21341345 0.2881607
## 2 318 pink 0.12110475 0.4448784310 0.06333518 0.2159117
## 3 335 cyan 0.20553934 0.1916064570 0.37782302 0.2098029
## 4 1511 green -0.13062883 0.4096185919 -0.13785539 -0.2303037
## 5 696 cyan 0.51416552 0.0004955612 0.58172012 0.5423984
## MM.lightcyan1 MM.red MM.cyan MM.green MM.darkgreen p.MM.brown
## 1 0.39371294 0.39440370 0.1716011 0.01262702 -0.32159456 1.747712e-01
## 2 -0.13895654 0.04509928 0.1646446 -0.09128563 0.02349860 6.902821e-01
## 3 0.10474453 -0.16446602 0.5768166 -0.44202372 0.03924483 1.362958e-02
## 4 -0.01105659 0.01519151 -0.3742276 0.37009968 -0.11074849 3.839668e-01
## 5 0.34261128 0.16938078 0.9487437 -0.58230824 -0.13722343 5.334082e-05
## p.MM.pink p.MM.lightcyan1 p.MM.red p.MM.cyan p.MM.green
## 1 0.064225929 0.009889392 0.009749076 2.772024e-01 9.367416e-01
## 2 0.169658893 0.380142977 0.776716511 2.974352e-01 5.653268e-01
## 3 0.182353765 0.509153801 0.297966625 6.376292e-05 3.380859e-03
## 4 0.142293902 0.944596014 0.923928420 1.462528e-02 1.584384e-02
## 5 0.000206758 0.026346310 0.283559497 1.288083e-21 5.220111e-05
## p.MM.darkgreen
## 1 0.03781992
## 2 0.88256945
## 3 0.80509779
## 4 0.48503678
## 5 0.38617153
snps.all <- data.frame(locus=extract.gt(vcf) %>% rownames()) %>%
separate(locus, sep = "_", into = c("x", "y,", "chrom", "pos"), remove = FALSE) %>%
select(locus, chrom, pos) %>% mutate(chrom=as.numeric(chrom), pos=as.numeric(pos))
#manhattan_plot(x, chr.info = snps.all$chrom, snp.info = snps.all$locus) + theme_minimal()
# install.packages("qqman")
# require(qqman)
#
# snps.all %>% cbind(x$pvalues)
# nrow(snps.all)
# length(x$pvalues)
OutFLANK’s code to use a VCF as input didn’t work for me (resulted in all NA values instead of genotypes), so here I will manually generate the genotype matrix
SNPRelate codes alleles this way: “There are four possible values stored in the variable genotype: 0, 1, 2 and 3. For bi-allelic SNP sites, “0” indicates two B alleles, “1” indicates one A allele and one B allele, “2” indicates two A alleles, and “3” is a missing genotype. (When you) take out genotype data with sample and SNP IDs, and four possible values are returned 0, 1, 2 and NA (3 is replaced by NA).
OutFLANK codes alleles this way: “SNPmat (the input matrix) is an array with a row for each individual in the data set and a column for each locus. This function assumes biallelic (i.e. SNP) data, and the value in each column is either 0, 1 or 2, showing the number of the focal alleles that the individual carries at that locus. (i.e., 2 means that the individual is a homozygote for the focal allele, 0, means that the individual has no copies of that focal allele, and 1 indicates a heterozygote.) For any locus that is unknown for an individual, SNPmat should have a 9 for that locus on that row.”
{r} # # Extract genotype matrix # geno.matrix4outflank <- snpgdsGetGeno(gdsobj="../results/genotype/genotypes.gds", snp.id = snpset.id, with.id=TRUE) # # paste("No. of SNPs for OutFlank analysis: ", ncol(geno.matrix4outflank$genotype), sep="") # paste("No. of samples for OutFlank analysis: ", nrow(geno.matrix4outflank$genotype), sep="") # # # Replace SNPRelate numeric allele coding with character allele coding # # #SNPRelate: # ### 0 = Homozygous for B # ### 1 = Heterozygous # ### 2 = Homozygous for A # ### 3 = Missing data # # #OutFLANK: # ### 0 = No copies of focal allele # ### 1 = Heterozygous # ### 2 = Homozygous # ### 9 = Missing data # # geno.matrix4outflank.recode <- geno.matrix4outflank$genotype %>% as_data_frame() %>% # mutate_all(function(x) { # case_when( # x == 0 ~ 2, # x == 1 ~ 1, # x == 2 ~ 2, # is.na(x) ~ 9)}) %>% # as.matrix() %>% unname() # # # Spot check that recode worked # data.frame(geno.matrix4outflank$genotype %>% as_data_frame() %>% select(V1) %>% as.vector(), # geno.matrix4outflank.recode %>% as_data_frame() %>% select(V1) %>% as.vector) %>% # rename("V1"="snprelate", "V1.1"="outflank") # # looks good # # rownames(geno.matrix4outflank.recode) <- rownames(geno.matrix4outflank) #The VCF specification allows for genotypes to be delimited with a ‘|’ when they are phased and a ‘/’ when unphased. Phased data has identified which one of the pair of chromosomes holds each allele, whereas unphased doesn’t identify the chromosomes.
Since OutFLANK doesn’t use phasing information, I will treat the genotype info with “|” and “" delimiter as the same.
2 = homozygote for the focal allele (i.e. reference allele) 0 = no copies of that focal allele 1 = heterozygote 9 = locus is unknown for an individual
# Load the data
vcf <- read.vcfR("../results/genotype/rkc_rnaseq_genotypes-final_miss20.recode.vcf", verbose = FALSE )
# Extract genotype matrix
geno.matrix4outflank <- extract.gt(vcf) %>% as.data.frame()
paste("No. of SNPs for OutFlank analysis: ", nrow(geno.matrix4outflank), sep="")
## [1] "No. of SNPs for OutFlank analysis: 1429"
paste("No. of samples for OutFlank analysis: ", ncol(geno.matrix4outflank), sep="")
## [1] "No. of samples for OutFlank analysis: 43"
Here are all the genotype codes in my SNP set
as.matrix(geno.matrix4outflank) %>% table()
## .
## 0/0 0/1 0/2 0|0 0|1 0|2 1/1 1/2 1|1 1|2 2/2 2|2 3|3
## 21009 6705 85 87 2371 73 13009 22 7819 12 93 124 2
# Replace allele coding with:
#OutFLANK:
### 0 = No copies of focal allele
### 1 = Heterozygous
### 2 = Homozygous
### 9 = Missing data
geno.matrix4outflank.recode <- geno.matrix4outflank %>%
mutate_all(function(x) {
case_when(
x == "0/0" ~ 2, # homozygous
x == "0/1" ~ 1, # heterozygous
x == "0/2" ~ 1, # heterozygous
x == "0|0" ~ 2, # homozygous
x == "0|1" ~ 1, # heterozygous
x == "0|2" ~ 1, # heterozygous
x == "1/1" ~ 0, # no copies
x == "1/2" ~ 0, # no copies
x == "1|1" ~ 0, # no copies
x == "1|2" ~ 0, # no copies
x == "2/2" ~ 0, # no copies
x == "2|2" ~ 0, # no copies
x == "3|3" ~ 0, # no copies
is.na(x) ~ 9)}) %>% t() %>% as.data.frame() %>%
mutate_if(is.numeric,as.integer)
# And I now only have 0, 1, 2, and 9 in the new matrix
table(as.matrix(geno.matrix4outflank.recode))
##
## 0 1 2 9
## 21081 9234 21096 10036
# I reviewed the new dataframe visually, and still saw some NA's!
geno.matrix4outflank.recode[is.na(geno.matrix4outflank.recode)]
## integer(0)
colnames(geno.matrix4outflank.recode) %>% head()
## [1] "HiC_scaffold_1_2523394" "HiC_scaffold_1_2542157" "HiC_scaffold_1_2647806"
## [4] "HiC_scaffold_1_2970226" "HiC_scaffold_1_3329447" "HiC_scaffold_1_3795100"
# check to make sure samples are in the same order in my genotype matrix and the annotation object
all(rownames(geno.matrix4outflank.recode) == tab.annot.gen$sample.id) #yes, all=TRUE
## [1] TRUE
# this will be my popNames vector
as.vector(tab.annot.gen$Treatment)
## [1] "Ambient" "Ambient" "Ambient" "Ambient" "Ambient" "Ambient"
## [7] "Low" "Low" "Low" "Low" "Low" "Low"
## [13] "Low" "Low" "Low" "Low" "Low" "Low"
## [19] "Ambient" "Ambient" "Ambient" "Moderate" "Moderate" "Moderate"
## [25] "Ambient" "Ambient" "Ambient" "Moderate" "Moderate" "Moderate"
## [31] "Moderate" "Moderate" "Moderate" "Low" "Low" "Low"
## [37] "Ambient" "Ambient" "Ambient" "Moderate" "Moderate" "Moderate"
## [43] "Moderate"
outflank.loci <- colnames(geno.matrix4outflank.recode)
outflank.pops <- as.vector(tab.annot.gen$Treatment)
ncol(geno.matrix4outflank.recode) == length(outflank.loci)
## [1] TRUE
nrow(geno.matrix4outflank.recode) == length(outflank.pops)
## [1] TRUE
FstDataFrame <- MakeDiploidFSTMat(SNPmat = geno.matrix4outflank.recode,
locusNames = outflank.loci,
popNames = outflank.pops)
## Calculating FSTs, may take a few minutes...
Check for loci with low sample sizes or unusual values of uncorrected FST
I’m unsure what to do here - I have lots of missing data, indicated by higher uncorrected Fst relative to corrected Fst
plot(FstDataFrame$FST, FstDataFrame$FSTNoCorr,
xlim=c(-0.01,0.3), ylim=c(-0.01,0.3),
pch=20)
abline(0,1)
Check if FST distribution looks chi-squared distributed
plot(FstDataFrame$He, FstDataFrame$FSTNoCorr, pch=20, col="grey")
Note how, when all loci are included, this doesn’t look chi-square distributed
hist(FstDataFrame$FSTNoCorr, breaks=200)
Removing low Heterozygosity variants results in a more chi-square looking FST distribution
Not for my data!
hist(FstDataFrame$FSTNoCorr[FstDataFrame$He>0.1], breaks=200)
summary(FstDataFrame$He) #He is very high
## Min. 1st Qu. Median Mean 3rd Qu. Max.
## 0.0000 0.4200 0.4533 0.4219 0.4869 0.5000
hist(FstDataFrame$FST, breaks=200)
summary(FstDataFrame$FST)
## Min. 1st Qu. Median Mean 3rd Qu. Max.
## -0.09247 -0.05088 -0.02280 -0.00504 0.02591 0.37526
# Run outflank
out1 <- OutFLANK(FstDataFrame, NumberOfSamples=43)
# Visualize results
OutFLANKResultsPlotter(out1, withOutliers = TRUE,
NoCorr = TRUE, Hmin = 0.1, binwidth = 0.001, Zoom =
FALSE, RightZoomFraction = 0.05, titletext = NULL)
hist(out1$results$pvaluesRightTail)
sum(out1$results$qvalues<0.1, na.rm=TRUE) # how many outliers?
## [1] 0
summary(out1$results$qvalues) #none!
## Min. 1st Qu. Median Mean 3rd Qu. Max. NA's
## 0.8375 0.9349 0.9763 0.9652 0.9886 0.9906 5
# PCA using SNPRelate
pca.fst <- snpgdsPCA(genofile, num.thread=2, autosome.only=FALSE, verbose = TRUE,
need.genmat = TRUE, snp.id =snps.fst)
## Principal Component Analysis (PCA) on genotypes:
## Excluding 0 SNP (monomorphic: TRUE, MAF: NaN, missing rate: NaN)
## # of samples: 43
## # of SNPs: 150
## using 2 threads
## # of principal components: 32
## PCA: the sum of all selected genotypes (0,1,2) = 5610
## CPU capabilities: Double-Precision SSE2
## Mon Apr 04 11:45:30 2022 (internal increment: 50960)
##
[..................................................] 0%, ETC: ---
[==================================================] 100%, completed, 0s
## Mon Apr 04 11:45:30 2022 Begin (eigenvalues and eigenvectors)
## Mon Apr 04 11:45:30 2022 Done.
pc.percent <- pca.fst$varprop*100
head(round(pc.percent, 2)) #This is the proportion variance explained by each PC
## [1] 8.02 7.13 6.52 5.74 4.90 4.27
tab <- data.frame(sample.id = pca.fst$sample.id,
PC1.gen = pca.fst$eigenvect[,1], # the first eigenvector
PC2.gen = pca.fst$eigenvect[,2], # the second eigenvector
PC3.gen = pca.fst$eigenvect[,3], # the third eigenvector
PC4.gen = pca.fst$eigenvect[,4], # the fourth eigenvector
PC5.gen = pca.fst$eigenvect[,5], # the fifth eigenvector
stringsAsFactors = FALSE)
# PCA using prcomp etc., but NOTE that I pull the covariance matrix from the SNPRelate PCA command
pca.fst.princomp.gen <- princomp(covmat=pca.fst$genmat, scores=T, cor = F) #specify "covmat" because input is a covariance matrix (not raw data!)
summary(pca.fst.princomp.gen)
## Importance of components:
## Comp.1 Comp.2 Comp.3 Comp.4 Comp.5
## Standard deviation 1.83541611 1.7304864 1.65448919 1.55329469 1.4341119
## Proportion of Variance 0.08020839 0.0712996 0.06517463 0.05744582 0.0489685
## Cumulative Proportion 0.08020839 0.1515080 0.21668262 0.27412844 0.3230969
## Comp.6 Comp.7 Comp.8 Comp.9 Comp.10
## Standard deviation 1.33964907 1.28665430 1.23467518 1.18270625 1.16225878
## Proportion of Variance 0.04272999 0.03941617 0.03629578 0.03330462 0.03216299
## Cumulative Proportion 0.36582693 0.40524311 0.44153889 0.47484351 0.50700649
## Comp.11 Comp.12 Comp.13 Comp.14 Comp.15
## Standard deviation 1.14782402 1.11283425 1.07593331 1.04080895 0.99706051
## Proportion of Variance 0.03136905 0.02948572 0.02756268 0.02579246 0.02366975
## Cumulative Proportion 0.53837554 0.56786126 0.59542394 0.62121639 0.64488615
## Comp.16 Comp.17 Comp.18 Comp.19 Comp.20
## Standard deviation 0.97818455 0.97165798 0.94934006 0.92763719 0.92065326
## Proportion of Variance 0.02278202 0.02247903 0.02145825 0.02048835 0.02018101
## Cumulative Proportion 0.66766817 0.69014720 0.71160545 0.73209380 0.75227481
## Comp.21 Comp.22 Comp.23 Comp.24 Comp.25
## Standard deviation 0.87143110 0.8607683 0.84065623 0.82993524 0.80521152
## Proportion of Variance 0.01808077 0.0176410 0.01682626 0.01639982 0.01543728
## Cumulative Proportion 0.77035558 0.7879966 0.80482284 0.82122266 0.83665994
## Comp.26 Comp.27 Comp.28 Comp.29 Comp.30
## Standard deviation 0.78312340 0.76873256 0.74499054 0.72798200 0.70480935
## Proportion of Variance 0.01460196 0.01407023 0.01321455 0.01261804 0.01182753
## Cumulative Proportion 0.85126190 0.86533213 0.87854668 0.89116472 0.90299225
## Comp.31 Comp.32 Comp.33 Comp.34
## Standard deviation 0.67563509 0.65116647 0.645294760 0.623735433
## Proportion of Variance 0.01086864 0.01009566 0.009914413 0.009262997
## Cumulative Proportion 0.91386088 0.92395655 0.933870958 0.943133956
## Comp.35 Comp.36 Comp.37 Comp.38
## Standard deviation 0.598288059 0.594366864 0.588195042 0.563834796
## Proportion of Variance 0.008522586 0.008411237 0.008237462 0.007569278
## Cumulative Proportion 0.951656541 0.960067779 0.968305241 0.975874519
## Comp.39 Comp.40 Comp.41 Comp.42 Comp.43
## Standard deviation 0.528504252 0.513263469 0.489604738 0.480417817 0
## Proportion of Variance 0.006650399 0.006272366 0.005707448 0.005495269 0
## Cumulative Proportion 0.982524917 0.988797284 0.994504731 1.000000000 1
pca.eigenval(pca.fst.princomp.gen)[2,1:5] #The Proporation of Variance (aka %variance)
## Importance of components:
## [1] 0.0802084 0.0712996 0.0651746 0.0574458 0.0489685
screeplot(pca.fst.princomp.gen, bstick=TRUE) #PC axes aren't super sign. - just look at PC1
tab <- data.frame(sample.id = pca.fst$sample.id,
PC1.gen = pca.fst.princomp.gen$loadings[,1], # the first eigenvector
PC2.gen = pca.fst.princomp.gen$loadings[,2], # the second eigenvector
PC3.gen = pca.fst.princomp.gen$loadings[,3], # the third eigenvector
PC4.gen = pca.fst.princomp.gen$loadings[,4], # the fourth eigenvector
stringsAsFactors = FALSE)
shapiro.test(pca.fst.princomp.gen$loadings) #Multivariate normality assumption met
##
## Shapiro-Wilk normality test
##
## data: pca.fst.princomp.gen$loadings
## W = 0.99827, p-value = 0.05064
tab.annot.gen.fst <- left_join(tab, sample.info, by=c("sample.id"="Sample")) %>% droplevels() %>%
mutate(Treatment=as.factor(Treatment))
group.fst <- as.factor(tab.annot.gen$Treatment)
# PC1 X PC2
ggplot(tab.annot.gen.fst, aes(x=PC1.gen, y=PC2.gen)) +
geom_point(aes(col=Treatment), size=3.5, alpha=0.75) +
theme_minimal() + ggtitle("Genetic Structure, PC1xPC2") +
xlab(paste("PC1 (", round(pc.percent[1], digits = 2), "%)", sep="")) +
ylab(paste("PC2 (", round(pc.percent[2], digits = 2), "%)", sep="")) +
theme(legend.position = "right") +
scale_color_manual(values=c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"), name="pH Treatment") +
guides(colour = guide_legend(override.aes = list(size=3.5))) +
stat_ellipse(aes(col=Treatment), size=0.3)
# PC1 X PC3
ggplot(tab.annot.gen.fst, aes(x=PC1.gen, y=PC3.gen)) +
geom_point(aes(col=Treatment), size=3.5, alpha=0.75) +
theme_minimal() + ggtitle("Genetic Structure, PC1xPC3") +
xlab(paste("PC1 (", round(pc.percent[1], digits = 2), "%)", sep="")) +
ylab(paste("PC3 (", round(pc.percent[3], digits = 2), "%)", sep="")) +
theme(legend.position = "right") +
scale_color_manual(values=c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"), name="pH Treatment") +
guides(colour = guide_legend(override.aes = list(size=3.5))) +
stat_ellipse(aes(col=Treatment), size=0.3)
# PC1 X PC4
ggplot(tab.annot.gen.fst, aes(x=PC1.gen, y=PC4.gen)) +
geom_point(aes(col=Treatment), size=3.5, alpha=0.75) +
theme_minimal() + ggtitle("Genetic Structure, PC1xPC4") +
xlab(paste("PC1 (", round(pc.percent[1], digits = 2), "%)", sep="")) +
ylab(paste("PC4 (", round(pc.percent[4], digits = 2), "%)", sep="")) +
theme(legend.position = "right") +
scale_color_manual(values=c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"), name="pH Treatment") +
guides(colour = guide_legend(override.aes = list(size=3.5))) +
stat_ellipse(aes(col=Treatment), size=0.3)
# PC2 X PC3
ggplot(tab.annot.gen.fst, aes(x=PC2.gen, y=PC3.gen)) +
geom_point(aes(col=Treatment), size=3.5, alpha=0.75) +
theme_minimal() + ggtitle("Genetic Structure, PC2xPC3") +
xlab(paste("PC2 (", round(pc.percent[2], digits = 2), "%)", sep="")) +
ylab(paste("PC3 (", round(pc.percent[3], digits = 2), "%)", sep="")) +
theme(legend.position = "right") +
scale_color_manual(values=c(Ambient="#2c7bb6", Moderate="#fdae61", Low="#d7191c"), name="pH Treatment") +
guides(colour = guide_legend(override.aes = list(size=3.5))) +
stat_ellipse(aes(col=Treatment), size=0.3)
# PC1 X PC2 color coded by tank
ggplot(tab.annot.gen.fst, aes(x=PC1.gen, y=PC2.gen)) +
geom_point(aes(col=as.factor(Tank)), size=3.5, alpha=0.75) +
theme_minimal() + ggtitle("Genetic Structure, PC1xPC2 (showing tank no.)") +
xlab(paste("PC1 (", round(pc.percent[1], digits = 2), "%)", sep="")) +
ylab(paste("PC2 (", round(pc.percent[2], digits = 2), "%)", sep="")) +
theme(legend.position = "right") +
guides(colour = guide_legend(override.aes = list(size=3.5)))
save(tab.annot.gen.fst, file="../results/genotype/tab.annot.gen.fst")